Query psy1294
Match_columns 105
No_of_seqs 149 out of 1213
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 23:36:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00057 Ldl_recept_a: Low-den 99.3 1.4E-12 3E-17 70.2 3.0 36 69-105 2-37 (37)
2 PF00057 Ldl_recept_a: Low-den 99.3 2.4E-12 5.2E-17 69.2 3.6 36 25-65 2-37 (37)
3 cd00112 LDLa Low Density Lipop 99.2 4.1E-12 8.9E-17 67.5 2.5 35 26-65 1-35 (35)
4 cd00112 LDLa Low Density Lipop 99.2 4.3E-12 9.2E-17 67.4 2.5 35 70-105 1-35 (35)
5 PF12999 PRKCSH-like: Glucosid 99.1 5E-11 1.1E-15 83.8 4.5 67 30-102 36-110 (176)
6 smart00192 LDLa Low-density li 99.0 4.8E-10 1E-14 58.7 2.9 32 70-102 2-33 (33)
7 smart00192 LDLa Low-density li 99.0 5.7E-10 1.2E-14 58.4 2.9 32 26-62 2-33 (33)
8 KOG1215|consensus 98.8 7.5E-09 1.6E-13 86.9 5.8 72 30-105 221-294 (877)
9 PF12999 PRKCSH-like: Glucosid 98.4 4.4E-07 9.6E-12 63.9 4.6 56 3-62 51-110 (176)
10 KOG1215|consensus 98.2 1.7E-06 3.8E-11 72.8 5.4 94 3-102 114-250 (877)
11 KOG2397|consensus 97.9 1.5E-05 3.2E-10 63.4 3.9 68 30-103 43-114 (480)
12 KOG2397|consensus 96.1 0.009 2E-07 47.9 4.4 56 5-64 59-115 (480)
13 KOG3509|consensus 95.6 0.011 2.3E-07 51.1 3.1 94 3-104 7-109 (964)
14 KOG3509|consensus 76.8 1.5 3.3E-05 38.4 1.6 63 41-105 2-66 (964)
15 PF10645 Carb_bind: Carbohydra 22.0 53 0.0011 18.7 1.0 40 41-82 7-48 (52)
No 1
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=99.32 E-value=1.4e-12 Score=70.18 Aligned_cols=36 Identities=44% Similarity=0.936 Sum_probs=33.7
Q ss_pred CcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 69 TLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 69 ~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
.|++ .+|+|.++.||+..++|||+.||.||+||.+|
T Consensus 2 ~C~~-~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~C 37 (37)
T PF00057_consen 2 TCPP-GEFRCGNGQCIPKSWVCDGIPDCPDGSDEQNC 37 (37)
T ss_dssp SSST-TEEEETTSSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred cCcC-CeeEcCCCCEEChHHcCCCCCCCCCCcccccC
Confidence 5777 99999999999999999999999999999886
No 2
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=99.31 E-value=2.4e-12 Score=69.25 Aligned_cols=36 Identities=36% Similarity=0.932 Sum_probs=32.7
Q ss_pred CCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcc
Q psy1294 25 WCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHC 65 (105)
Q Consensus 25 ~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C 65 (105)
.|.. .+|+|. ++.||+. .|+|||+.||.|||||.+|
T Consensus 2 ~C~~-~~f~C~---~~~CI~~-~~~CDg~~DC~dgsDE~~C 37 (37)
T PF00057_consen 2 TCPP-GEFRCG---NGQCIPK-SWVCDGIPDCPDGSDEQNC 37 (37)
T ss_dssp SSST-TEEEET---TSSEEEG-GGTTSSSCSSSSSTTTSSH
T ss_pred cCcC-CeeEcC---CCCEECh-HHcCCCCCCCCCCcccccC
Confidence 4765 899998 7789999 9999999999999999876
No 3
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=99.25 E-value=4.1e-12 Score=67.47 Aligned_cols=35 Identities=29% Similarity=0.816 Sum_probs=31.6
Q ss_pred CCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcc
Q psy1294 26 CQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHC 65 (105)
Q Consensus 26 C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C 65 (105)
|.+ .+|+|. +++||+. .++|||+.||.|||||.+|
T Consensus 1 C~~-~~f~C~---~~~Ci~~-~~~CDg~~DC~dgsDE~~C 35 (35)
T cd00112 1 CPP-NEFRCA---NGRCIPS-SWVCDGEDDCGDGSDEENC 35 (35)
T ss_pred CCC-CeEEcC---CCCeeCH-HHcCCCccCCCCCcccccC
Confidence 444 799998 7999999 9999999999999999876
No 4
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=99.25 E-value=4.3e-12 Score=67.42 Aligned_cols=35 Identities=37% Similarity=0.775 Sum_probs=32.3
Q ss_pred cCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 70 LPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 70 C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
|++ .+|+|.+++||+..++|||+.||.|+|||.+|
T Consensus 1 C~~-~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~C 35 (35)
T cd00112 1 CPP-NEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35 (35)
T ss_pred CCC-CeEEcCCCCeeCHHHcCCCccCCCCCcccccC
Confidence 345 89999999999999999999999999999887
No 5
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=99.14 E-value=5e-11 Score=83.79 Aligned_cols=67 Identities=27% Similarity=0.394 Sum_probs=57.9
Q ss_pred CeEEecCCCCCee-eeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCceecCCC----CeEeCCcccCCCCC---CCCCCC
Q psy1294 30 GKVMCGIYPDVQC-YDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSG----ETYTKEQHCNGVLD---CKDGSD 101 (105)
Q Consensus 30 ~~f~C~~~~~~~C-i~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~C~~g----~ci~~~~~CDg~~d---C~dgsD 101 (105)
+.|.|.. +..- |+. .++.|++-||+|||||.+-. .|+. ..|+|.+. ..|+.++|=||+-| |-||||
T Consensus 36 ~~f~Cl~--~~~~~I~~-~~iNDdyCDC~DGSDEPGTs--AC~~-~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSD 109 (176)
T PF12999_consen 36 GKFTCLD--GSKIVIPF-SQINDDYCDCPDGSDEPGTS--ACSN-GKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSD 109 (176)
T ss_pred CceEecC--CCCceecH-HHccCcceeCCCCCCccccc--cCcC-ceEeeccCCCCCceeehhhhcCCcCcccccCCCCC
Confidence 5799983 4444 999 99999999999999998644 4777 89999874 58999999999999 999999
Q ss_pred C
Q psy1294 102 E 102 (105)
Q Consensus 102 E 102 (105)
|
T Consensus 110 E 110 (176)
T PF12999_consen 110 E 110 (176)
T ss_pred C
Confidence 9
No 6
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.98 E-value=4.8e-10 Score=58.67 Aligned_cols=32 Identities=44% Similarity=0.775 Sum_probs=29.6
Q ss_pred cCCCCceecCCCCeEeCCcccCCCCCCCCCCCC
Q psy1294 70 LPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDE 102 (105)
Q Consensus 70 C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE 102 (105)
|+. .+|+|.++.||+..++|||+.||.|++||
T Consensus 2 C~~-~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPP-GEFQCDNGRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCC-CeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence 455 68999999999999999999999999998
No 7
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.96 E-value=5.7e-10 Score=58.39 Aligned_cols=32 Identities=34% Similarity=0.834 Sum_probs=29.0
Q ss_pred CCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcC
Q psy1294 26 CQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDE 62 (105)
Q Consensus 26 C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE 62 (105)
|.. .+|+|. ++.||+. .++|||+.||.|+|||
T Consensus 2 C~~-~~f~C~---~~~Ci~~-~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPP-GEFQCD---NGRCIPL-SWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCC-CeEECC---CCCEECc-hhhCCCcCcCcCCCCC
Confidence 555 589998 7889999 9999999999999998
No 8
>KOG1215|consensus
Probab=98.80 E-value=7.5e-09 Score=86.95 Aligned_cols=72 Identities=31% Similarity=0.680 Sum_probs=63.0
Q ss_pred CeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcC--CcccCCCcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 30 GKVMCGIYPDVQCYDNRTQACDSVADCDNMKDE--KHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 30 ~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE--~~C~~~~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
..++|. +..+||.. .++|||..+|.+++|| .++....|.. .++.|.++.|++...+|+|..+|++|+||.+|
T Consensus 221 ~~~~c~--g~~~~i~~-~~~~Dg~~dc~~~~de~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~g~~d~pdg~de~~~ 294 (877)
T KOG1215|consen 221 EVTRCD--GSSRCILI-SEVCDGPRDCVDGPDEGVMNCSDATCEA-PEIECADGDCSDRQKLCDGDLDCPDGLDEDYC 294 (877)
T ss_pred eEEEec--CCCcEEee-hhccCCCcccccCCcCceeEeeccccCC-cceeecCCCCccceEEecCccCCCCccccccc
Confidence 678887 35699999 9999999999999999 4666566776 78999999999999999999999999999754
No 9
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=98.40 E-value=4.4e-07 Score=63.92 Aligned_cols=56 Identities=21% Similarity=0.324 Sum_probs=47.9
Q ss_pred cccCCCcccCCCCCCCCCcCCCCCCCCCeEEecCCC-CCeeeeCCCCCcCCCCC---CCCCCcC
Q psy1294 3 VMKCDLFNDSKSASTFATTGVEWCQSQGKVMCGIYP-DVQCYDNRTQACDSVAD---CDNMKDE 62 (105)
Q Consensus 3 ~~~CDg~~dC~~~d~sd~~~e~~C~~~~~f~C~~~~-~~~Ci~~~~~~CDg~~D---C~dgsDE 62 (105)
+.+.|++=|| +|||||.|...|.. +.|+|.+.+ -.+-||. ++|=||+-| |=|||||
T Consensus 51 ~~iNDdyCDC--~DGSDEPGTsAC~~-~~FyC~N~g~~p~~i~~-s~VnDGICDy~~CCDGSDE 110 (176)
T PF12999_consen 51 SQINDDYCDC--PDGSDEPGTSACSN-GKFYCENKGHIPRYIPS-SRVNDGICDYDICCDGSDE 110 (176)
T ss_pred HHccCcceeC--CCCCCccccccCcC-ceEeeccCCCCCceeeh-hhhcCCcCcccccCCCCCC
Confidence 4678999999 99999888889976 799998311 1368999 999999999 9999999
No 10
>KOG1215|consensus
Probab=98.23 E-value=1.7e-06 Score=72.83 Aligned_cols=94 Identities=23% Similarity=0.431 Sum_probs=70.1
Q ss_pred cccCCCcccCCCCCCCCCc---CCCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCc---------
Q psy1294 3 VMKCDLFNDSKSASTFATT---GVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTL--------- 70 (105)
Q Consensus 3 ~~~CDg~~dC~~~d~sd~~---~e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C--------- 70 (105)
.|+..+.+.. .+..+.. ++..|.. .+|+|.. ++.+|||. .|+||+..+|.+|+||.+|....+
T Consensus 114 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~c~~-~~~~Cip~-~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~~~ 188 (877)
T KOG1215|consen 114 AYHPSSQPLA--PDPCAESGNGPCSHCCL-DKFSCRT-GSCKCIPG-DWLCDGEADCPDGSDELNCAVRRCEPRGASLDC 188 (877)
T ss_pred EEecCCCCCC--CCcccccCCCCCccccC-CCCCCcC-ccccCCCC-ceeCCCCCccccchhhhcccccccCcccccccc
Confidence 4566666667 5555533 3345554 7899972 26899999 999999999999999999852111
Q ss_pred ------------------------------CCCCceecCCC-CeEeCCcccCCCCCCCCCCCC
Q psy1294 71 ------------------------------PVVLSLQCGSG-ETYTKEQHCNGVLDCKDGSDE 102 (105)
Q Consensus 71 ------------------------------~~~~~f~C~~g-~ci~~~~~CDg~~dC~dgsDE 102 (105)
.. ..++|..+ +||...++|||..+|.+++||
T Consensus 189 ~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~-~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de 250 (877)
T KOG1215|consen 189 IVAIKVCDIQHDCADDYDESEGRIYWTDDSRI-EVTRCDGSSRCILISEVCDGPRDCVDGPDE 250 (877)
T ss_pred ceeeeecCcccccccccccccCcccccCCcce-eEEEecCCCcEEeehhccCCCcccccCCcC
Confidence 12 45677664 799999999999999999998
No 11
>KOG2397|consensus
Probab=97.87 E-value=1.5e-05 Score=63.37 Aligned_cols=68 Identities=25% Similarity=0.365 Sum_probs=58.9
Q ss_pred CeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCceecCCC----CeEeCCcccCCCCCCCCCCCCC
Q psy1294 30 GKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSG----ETYTKEQHCNGVLDCKDGSDEM 103 (105)
Q Consensus 30 ~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~C~~g----~ci~~~~~CDg~~dC~dgsDE~ 103 (105)
..|.|. +...-|+. .++-|..-||.||+||..-. -|+. ..|+|.+. .-|+++.|=||+-||-|||||.
T Consensus 43 ~~~~CL--dgs~~i~f-~qlNDd~CDC~DGsDEPGts--ACpn-gkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~ 114 (480)
T KOG2397|consen 43 SMFKCL--DGSKTISF-SQLNDDSCDCLDGSDEPGTS--ACPN-GKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEY 114 (480)
T ss_pred cceeec--cCCcccCH-HHhccccccCCCCCCCCccc--cCCC-CceeeeecCCCceeeechhccCcccccccCCCCc
Confidence 579998 46788998 99999999999999996543 5888 99999864 4899999999999999999995
No 12
>KOG2397|consensus
Probab=96.10 E-value=0.009 Score=47.86 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=46.0
Q ss_pred cCCCcccCCCCCCCCCcCCCCCCCCCeEEecCC-CCCeeeeCCCCCcCCCCCCCCCCcCCc
Q psy1294 5 KCDLFNDSKSASTFATTGVEWCQSQGKVMCGIY-PDVQCYDNRTQACDSVADCDNMKDEKH 64 (105)
Q Consensus 5 ~CDg~~dC~~~d~sd~~~e~~C~~~~~f~C~~~-~~~~Ci~~~~~~CDg~~DC~dgsDE~~ 64 (105)
+=|.+=|| .+|+|+-+-..|+. ++|+|.+. ....-|+. +.+=||+.||=|||||..
T Consensus 59 lNDd~CDC--~DGsDEPGtsACpn-gkF~C~N~G~~p~~i~s-srV~DGICDCCDgSDE~~ 115 (480)
T KOG2397|consen 59 LNDDSCDC--LDGSDEPGTSACPN-GKFYCVNQGHQPKYIPS-SRVNDGICDCCDGSDEYL 115 (480)
T ss_pred hccccccC--CCCCCCCccccCCC-CceeeeecCCCceeeec-hhccCcccccccCCCCcc
Confidence 33677899 99999888888997 89999631 23468999 999999999999999964
No 13
>KOG3509|consensus
Probab=95.62 E-value=0.011 Score=51.10 Aligned_cols=94 Identities=22% Similarity=0.446 Sum_probs=73.5
Q ss_pred cccCCCcccCCCCCCCCCcCC----CCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccC----CCcCCCC
Q psy1294 3 VMKCDLFNDSKSASTFATTGV----EWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHT----GTLPVVL 74 (105)
Q Consensus 3 ~~~CDg~~dC~~~d~sd~~~e----~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~----~~C~~~~ 74 (105)
.+.|++..|+ .+.++.... ..+. +.+|.|. ++++... .+.||....+..++.+.+|.. ..|.+ .
T Consensus 7 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~-p~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~ 78 (964)
T KOG3509|consen 7 RYACDRQPDC--RDRSDVANDPAIGSACS-PNEFKCN---NPRCVQP-EALLDADSTCGPNSTPSGCNAKPSASDCKP-T 78 (964)
T ss_pred hhhhccchhh--HhhcccCCCccccccCC-cchhccC---CccccCc-hhhhccccccCCCCCcCCccccccccccCC-c
Confidence 4678999999 777772211 1233 3788887 8999999 999999999999998888754 34566 7
Q ss_pred ceecCCC-CeEeCCcccCCCCCCCCCCCCCC
Q psy1294 75 SLQCGSG-ETYTKEQHCNGVLDCKDGSDEMH 104 (105)
Q Consensus 75 ~f~C~~g-~ci~~~~~CDg~~dC~dgsDE~~ 104 (105)
.+.|.+. ++.+....|+|.++|.++++|..
T Consensus 79 ~~~c~~~~~~~~~~~~~~g~~~~~~~~~~~~ 109 (964)
T KOG3509|consen 79 ETQCRDRLRCNPQSFQCDGTNDCKDGSDEVG 109 (964)
T ss_pred ccccccchhcCCccccccCCCCCCccchhcc
Confidence 7788776 57788999999999999999854
No 14
>KOG3509|consensus
Probab=76.79 E-value=1.5 Score=38.36 Aligned_cols=63 Identities=21% Similarity=0.395 Sum_probs=52.6
Q ss_pred eeeeCCCCCcCCCCCCCCCCcCCcccC--CCcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 41 QCYDNRTQACDSVADCDNMKDEKHCHT--GTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 41 ~Ci~~~~~~CDg~~DC~dgsDE~~C~~--~~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
.|... .+.|++..++.+.+|+.+.+. ..+.+ +.+.|.++++....+.+|....+..++.+.+|
T Consensus 2 ~c~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (964)
T KOG3509|consen 2 ECVKN-RYACDRQPDCRDRSDVANDPAIGSACSP-NEFKCNNPRCVQPEALLDADSTCGPNSTPSGC 66 (964)
T ss_pred chhhh-hhhhccchhhHhhcccCCCccccccCCc-chhccCCccccCchhhhccccccCCCCCcCCc
Confidence 35556 789999999999999998755 45666 89999999999999999999999988866543
No 15
>PF10645 Carb_bind: Carbohydrate binding; InterPro: IPR018909 This is a carbohydrate binding domain which has been shown in Schizosaccharomyces pombe (Fission yeast) to be required for septum localisation [].
Probab=22.04 E-value=53 Score=18.70 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=23.9
Q ss_pred eeeeCCCCCcCCCCCCC--CCCcCCcccCCCcCCCCceecCCCC
Q psy1294 41 QCYDNRTQACDSVADCD--NMKDEKHCHTGTLPVVLSLQCGSGE 82 (105)
Q Consensus 41 ~Ci~~~~~~CDg~~DC~--dgsDE~~C~~~~C~~~~~f~C~~g~ 82 (105)
.--|. .++|++..-|+ +|..=..|.. .|-.+.++.|.+++
T Consensus 7 ~Ydps-~Y~C~~~~LCPI~~g~~l~~C~g-aCY~~~~Y~C~n~~ 48 (52)
T PF10645_consen 7 PYDPS-SYVCDNNFLCPITNGVPLSYCGG-ACYSPSQYSCNNGV 48 (52)
T ss_pred ccChh-hcEecCCEECCeECCcccccccc-ccCCHHHceecCCe
Confidence 34455 77888777777 4444455643 45543667777664
Done!