Query psy1294
Match_columns 105
No_of_seqs 149 out of 1213
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 23:37:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fyj_A Low-density lipoprotein 99.9 3.2E-25 1.1E-29 137.8 9.1 77 24-105 3-80 (82)
2 2fcw_B LDL receptor, low-densi 99.9 1.9E-25 6.4E-30 138.3 4.0 75 25-105 2-78 (80)
3 1n7d_A LDL receptor, low-densi 99.9 3.6E-23 1.2E-27 167.5 8.4 96 2-105 64-163 (699)
4 1n7d_A LDL receptor, low-densi 99.9 4.1E-22 1.4E-26 161.3 9.3 96 2-105 142-249 (699)
5 3m0c_C LDL receptor, low-densi 99.9 1.1E-23 3.8E-28 173.1 0.0 98 2-105 39-140 (791)
6 3m0c_C LDL receptor, low-densi 99.8 1.2E-22 4.1E-27 167.0 0.0 94 2-103 82-177 (791)
7 2fyj_A Low-density lipoprotein 99.7 2.7E-17 9.1E-22 101.9 6.4 59 2-66 20-81 (82)
8 2xrc_A Human complement factor 99.7 3.7E-17 1.3E-21 130.1 6.7 89 3-105 187-275 (565)
9 2fcw_B LDL receptor, low-densi 99.6 4E-16 1.4E-20 96.2 4.8 58 2-66 18-79 (80)
10 2kny_A LRP-1, linker, APO-E; l 99.3 2.1E-13 7.2E-18 84.0 1.1 64 23-91 6-75 (80)
11 1ajj_A LR5, low-density lipopr 99.3 8.9E-13 3E-17 70.0 3.3 36 26-66 2-37 (37)
12 2jm4_A Relaxin receptor 1; LDL 99.3 1.8E-12 6.2E-17 71.0 4.3 39 23-66 4-43 (43)
13 1ajj_A LR5, low-density lipopr 99.3 7.8E-13 2.7E-17 70.3 2.7 35 70-105 2-36 (37)
14 2gtl_O Extracellular hemoglobi 99.3 1.2E-13 4.1E-18 98.8 -1.0 65 8-78 39-103 (215)
15 2knx_A Prolow-density lipoprot 99.3 4.8E-12 1.6E-16 71.5 5.6 44 23-72 4-47 (50)
16 1cr8_A Protein (LOW density li 99.3 2.2E-12 7.5E-17 70.3 4.0 38 25-66 3-40 (42)
17 2jm4_A Relaxin receptor 1; LDL 99.3 2.4E-12 8.2E-17 70.5 3.8 36 69-105 6-42 (43)
18 3a7q_B Low-density lipoprotein 99.3 2.7E-12 9.3E-17 70.6 3.7 38 24-66 6-43 (44)
19 3a7q_B Low-density lipoprotein 99.3 2.7E-12 9.4E-17 70.6 3.6 36 69-105 7-42 (44)
20 1k7b_A Subgroup A ROUS sarcoma 99.3 2.5E-12 8.6E-17 71.6 3.0 42 23-66 4-47 (47)
21 1d2l_A Lipoprotein receptor re 99.3 4.1E-12 1.4E-16 70.3 3.8 38 23-65 3-40 (45)
22 1d2l_A Lipoprotein receptor re 99.3 3.2E-12 1.1E-16 70.7 3.2 36 69-105 5-40 (45)
23 3dpr_E LDL-receptor class A 3; 99.3 2.9E-12 9.8E-17 68.8 2.9 35 30-66 4-38 (39)
24 1cr8_A Protein (LOW density li 99.3 4.8E-12 1.6E-16 69.0 3.7 36 69-105 3-39 (42)
25 2m0p_A Low-density lipoprotein 99.2 4E-12 1.4E-16 72.3 2.7 39 23-66 4-42 (52)
26 1j8e_A Low-density lipoprotein 99.2 4.8E-12 1.6E-16 69.6 3.0 38 23-65 2-39 (44)
27 1k7b_A Subgroup A ROUS sarcoma 99.2 4.2E-12 1.4E-16 70.7 2.4 36 69-105 6-46 (47)
28 1jrf_A TVA LDL-A module, subgr 99.2 1.9E-12 6.5E-17 72.1 0.8 41 24-66 3-45 (47)
29 2m0p_A Low-density lipoprotein 99.2 2.9E-12 9.9E-17 72.9 1.6 37 68-105 5-41 (52)
30 3dpr_E LDL-receptor class A 3; 99.2 6.6E-12 2.3E-16 67.4 2.9 35 70-105 1-37 (39)
31 2i1p_A Low-density lipoprotein 99.2 4.6E-12 1.6E-16 70.9 1.0 36 69-105 6-42 (48)
32 2i1p_A Low-density lipoprotein 99.2 7.6E-12 2.6E-16 70.0 1.7 38 24-66 5-43 (48)
33 1j8e_A Low-density lipoprotein 99.1 8.6E-12 3E-16 68.6 1.4 35 69-104 4-38 (44)
34 2knx_A Prolow-density lipoprot 99.1 1.6E-11 5.5E-16 69.3 2.3 36 69-105 6-42 (50)
35 2gtl_O Extracellular hemoglobi 99.1 1.1E-12 3.9E-17 93.7 -3.3 51 52-105 39-91 (215)
36 1jrf_A TVA LDL-A module, subgr 99.1 6.4E-12 2.2E-16 69.9 0.2 36 69-105 4-44 (47)
37 2kny_A LRP-1, linker, APO-E; l 99.1 5.5E-11 1.9E-15 73.1 2.7 40 64-104 3-43 (80)
38 2xrc_A Human complement factor 99.0 2E-10 6.9E-15 91.3 5.9 59 2-67 219-277 (565)
39 2gtl_N Extracellular hemoglobi 99.0 2E-10 6.7E-15 82.1 4.6 60 23-86 50-114 (220)
40 2gtl_M Hemoglobin linker chain 98.8 2.6E-09 8.7E-14 76.5 4.3 42 22-67 50-94 (217)
41 2gtl_M Hemoglobin linker chain 98.6 1.6E-08 5.4E-13 72.3 2.4 35 68-103 52-88 (217)
42 2gtl_N Extracellular hemoglobi 98.5 5E-08 1.7E-12 69.7 3.7 35 68-103 51-87 (220)
43 3ojy_B Complement component C8 98.5 1E-07 3.6E-12 75.7 5.4 47 30-85 69-115 (537)
44 3ojy_B Complement component C8 98.4 2.5E-07 8.6E-12 73.5 4.7 62 42-105 34-101 (537)
45 3ojy_A Complement component C8 98.3 5.8E-07 2E-11 71.7 5.9 72 25-105 22-100 (554)
46 3ojy_A Complement component C8 98.3 7.8E-07 2.7E-11 71.0 5.3 35 30-67 68-102 (554)
47 3t5o_A Complement component C6 97.8 1.2E-05 4E-10 67.3 4.1 32 74-105 121-152 (913)
48 3t5o_A Complement component C6 97.8 2.2E-05 7.4E-10 65.6 4.7 34 30-67 121-154 (913)
No 1
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.92 E-value=3.2e-25 Score=137.78 Aligned_cols=77 Identities=27% Similarity=0.570 Sum_probs=70.1
Q ss_pred CCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcC-CcccCCCcCCCCceecCCCCeEeCCcccCCCCCCCCCCCC
Q psy1294 24 EWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDE-KHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDE 102 (105)
Q Consensus 24 ~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE-~~C~~~~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE 102 (105)
..|.. .+|+|. +++|||. .|+|||+.||.||||| .+|....|.+..+|+|.+|+||++.++|||+.||.|||||
T Consensus 3 ~~C~~-~~f~C~---~g~Ci~~-~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~g~CI~~~~~CDG~~DC~DgSDE 77 (82)
T 2fyj_A 3 RTCPP-NQFSCA---SGRCIPI-SWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDE 77 (82)
T ss_dssp SSSCT-TEEETT---SSCEEET-TSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTTSCEEETTCBSSSSBCCSSSSSC
T ss_pred CCCCC-CceEeC---CCCEEec-cccCCCcccCCCccccccccccccCCCCCceECCCCCeEcHHHccCCCCcCCCCccc
Confidence 45776 899998 8899999 9999999999999999 8997777853389999999999999999999999999999
Q ss_pred CCC
Q psy1294 103 MHC 105 (105)
Q Consensus 103 ~~C 105 (105)
.+|
T Consensus 78 ~~C 80 (82)
T 2fyj_A 78 AGC 80 (82)
T ss_dssp SCC
T ss_pred cCC
Confidence 987
No 2
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.91 E-value=1.9e-25 Score=138.32 Aligned_cols=75 Identities=35% Similarity=0.628 Sum_probs=68.9
Q ss_pred CCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCceecCCCCeEeCCcccCCCCCCCCCCCC--
Q psy1294 25 WCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDE-- 102 (105)
Q Consensus 25 ~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE-- 102 (105)
.|.+ .+|+|. +++||+. .|+|||+.||.|||||.+|....|++ .+|+|.+|+||+..++|||+.||.|||||
T Consensus 2 ~C~~-~~F~C~---~g~CI~~-~~~CDg~~DC~DgSDE~~C~~~~C~~-~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~ 75 (80)
T 2fcw_B 2 TCSQ-AEFRCH---DGKCISR-QFVCDSDRDCLDGSDEASCPVLTCGP-ASFQCNSSTCIPQLWACDNDPDCEDGSDEWP 75 (80)
T ss_dssp CCCT-TEEECT---TSCEEEG-GGTTSSSCCSTTCTTTTTHHHHHCCT-TEEECTTSCEEEGGGTTSSSCCSTTCGGGCG
T ss_pred CCCC-CccCCC---CCCEEee-ecccCCcccCCCcccccccccccCCc-eeeECCCCCEEecccccCCCcCCCCCCCcCc
Confidence 4665 899998 8999999 99999999999999999997556888 99999999999999999999999999999
Q ss_pred CCC
Q psy1294 103 MHC 105 (105)
Q Consensus 103 ~~C 105 (105)
.+|
T Consensus 76 ~~C 78 (80)
T 2fcw_B 76 QRC 78 (80)
T ss_dssp GGC
T ss_pred ccC
Confidence 555
No 3
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.88 E-value=3.6e-23 Score=167.48 Aligned_cols=96 Identities=31% Similarity=0.556 Sum_probs=81.2
Q ss_pred CcccCCCcccCCCCCCCCCcCC--CCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCceecC
Q psy1294 2 KVMKCDLFNDSKSASTFATTGV--EWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCG 79 (105)
Q Consensus 2 ~~~~CDg~~dC~~~d~sd~~~e--~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~C~ 79 (105)
..|+|||+.|| .++|||.+. ..|.. .+|+|. +++||+. .|+|||+.||.|||||.+|....|++ .+|+|.
T Consensus 64 ~~~~Cdg~~dC--~dgsDE~~C~~~~C~~-~~f~C~---~g~Ci~~-~~~Cdg~~dC~dgsDE~~C~~~~C~~-~~f~C~ 135 (699)
T 1n7d_A 64 QFWRCDGQVDC--DNGSDEQGCPPKTCSQ-DEFRCH---DGKCISR-QFVCDSDRDCLDGSDEASCPVLTCGP-ASFQCN 135 (699)
T ss_dssp SSSTTSSSCCC---CCCTTTSCSSCCCCS-SCCCSS---CC----C-CCTTCSSCCSSSSCSSSSCCCCCCCS-SCCCCS
T ss_pred cceecCCcccC--CCCcccCccccccccc-CcEEcC---CCCEecH-HHcCCCcCcCCCCCccCCcCccccCc-cccCCC
Confidence 57999999999 888884322 24655 899998 8999999 99999999999999999998778999 999999
Q ss_pred CCCeEeCCcccCCCCCCCCCCCC--CCC
Q psy1294 80 SGETYTKEQHCNGVLDCKDGSDE--MHC 105 (105)
Q Consensus 80 ~g~ci~~~~~CDg~~dC~dgsDE--~~C 105 (105)
+++||+..|+|||+.||.|+||| .+|
T Consensus 136 ~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C 163 (699)
T 1n7d_A 136 SSTCIPQLWACDNDPDCEDGSDEWPQRC 163 (699)
T ss_dssp SSCCCCTTSTTCSSCCSSSSSSSSCSSS
T ss_pred CCcccchhcccCCCCcCCCCcccccccC
Confidence 99999999999999999999999 665
No 4
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.86 E-value=4.1e-22 Score=161.31 Aligned_cols=96 Identities=27% Similarity=0.539 Sum_probs=85.6
Q ss_pred CcccCCCcccCCCCCCCCC--cCC----------CCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCC
Q psy1294 2 KVMKCDLFNDSKSASTFAT--TGV----------EWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGT 69 (105)
Q Consensus 2 ~~~~CDg~~dC~~~d~sd~--~~e----------~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~ 69 (105)
+.|+|||+.|| .++||| ... ..|.. .+|+|. +++||+. .|+|||+.||.|||||.+|....
T Consensus 142 ~~~~Cdg~~dC--~dgsDE~~~~C~~~~~~~~~~~~C~~-~~f~C~---~g~Ci~~-~~~CDg~~dC~dgsDE~~C~~~~ 214 (699)
T 1n7d_A 142 QLWACDNDPDC--EDGSDEWPQRCRGLYVFQGDSSPCSA-FEFHCL---SGECIHS-SWRCDGGPDCKDKSDEENCAVAT 214 (699)
T ss_dssp TTSTTCSSCCS--SSSSSSSCSSSSCCCCCSSCCCCSCS-SSCCCS---SSCCCST-TCTTSSSCCSTTSCSSCSCCCCC
T ss_pred hhcccCCCCcC--CCCcccccccCCCcccccCCCCCCCC-cceecC---CCceEec-hhccCCCCCCCCCcccccCCCcc
Confidence 57999999999 888885 211 24654 899998 7899999 99999999999999999998778
Q ss_pred cCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 70 LPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 70 C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
|.+ .+|+|.+|.||+..++|||+.||.|++||.+|
T Consensus 215 C~~-~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~C 249 (699)
T 1n7d_A 215 CRP-DEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 249 (699)
T ss_dssp CCS-SEEESSSSCEEETTCCSSSCCCSSSSCSSSST
T ss_pred cCC-CcEecCCCceeeeecccCCCCCCCCCCccCCC
Confidence 998 99999999999999999999999999999876
No 5
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.86 E-value=1.1e-23 Score=173.09 Aligned_cols=98 Identities=30% Similarity=0.540 Sum_probs=0.0
Q ss_pred CcccCCCcccCCCCCCCCCcC----CCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCcee
Q psy1294 2 KVMKCDLFNDSKSASTFATTG----VEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQ 77 (105)
Q Consensus 2 ~~~~CDg~~dC~~~d~sd~~~----e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~ 77 (105)
..|+|||+.|| .|+|||.. ...|.+ .+|+|.. ++++|||. .|+|||+.||.|||||.+|....|.+ .+|+
T Consensus 39 ~~~~CDg~~dC--~D~sDE~~~~C~~~~C~~-~~f~C~~-~~~~Ci~~-~~~CDg~~dC~dgsDE~~C~~~~C~~-~~f~ 112 (791)
T 3m0c_C 39 YKWVCDGSAEC--QDGSDESQETCLSVTCKS-GDFSCGG-RVNRCIPQ-FWRCDGQVDCDNGSDEQGCPPKTCSQ-DEFR 112 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcCCCCccC--CCCCcccccccccCccCc-CccccCC-CCCCEeec-cccCCCCcCcCCCcccCCccCccccC-CeEE
Confidence 57999999999 88998543 235665 8999981 12899999 99999999999999999998777988 9999
Q ss_pred cCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 78 CGSGETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 78 C~~g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
|.+|+||+..++|||+.||.|+|||.+|
T Consensus 113 C~~g~Ci~~~~~CDg~~dC~dgsDE~~C 140 (791)
T 3m0c_C 113 CHDGKCISRQFVCDSDRDCLDGSDEASC 140 (791)
T ss_dssp ----------------------------
T ss_pred CCCCCEECHHHcCCCcccCCCCcccccc
Confidence 9999999999999999999999999876
No 6
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.84 E-value=1.2e-22 Score=167.00 Aligned_cols=94 Identities=31% Similarity=0.525 Sum_probs=0.0
Q ss_pred CcccCCCcccCCCCCCCCCcCC--CCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCceecC
Q psy1294 2 KVMKCDLFNDSKSASTFATTGV--EWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCG 79 (105)
Q Consensus 2 ~~~~CDg~~dC~~~d~sd~~~e--~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~C~ 79 (105)
..|+|||+.|| .+++||... ..|.. .+|+|. +++||+. .|+|||+.||.|||||.+|....|.+ .+|+|.
T Consensus 82 ~~~~CDg~~dC--~dgsDE~~C~~~~C~~-~~f~C~---~g~Ci~~-~~~CDg~~dC~dgsDE~~C~~~~C~~-~~f~C~ 153 (791)
T 3m0c_C 82 QFWRCDGQVDC--DNGSDEQGCPPKTCSQ-DEFRCH---DGKCISR-QFVCDSDRDCLDGSDEASCPVLTCGP-ASFQCN 153 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCCcCc--CCCcccCCccCccccC-CeEECC---CCCEECH-HHcCCCcccCCCCccccccccccccc-ceeccC
Confidence 57999999999 899994321 23444 899998 8999999 99999999999999999998778998 999999
Q ss_pred CCCeEeCCcccCCCCCCCCCCCCC
Q psy1294 80 SGETYTKEQHCNGVLDCKDGSDEM 103 (105)
Q Consensus 80 ~g~ci~~~~~CDg~~dC~dgsDE~ 103 (105)
+++||+..|+|||..||.|||||.
T Consensus 154 ~~~Ci~~~~~Cdg~~dC~dgsDE~ 177 (791)
T 3m0c_C 154 SSTCIPQLWACDNDPDCEDGSDEW 177 (791)
T ss_dssp ------------------------
T ss_pred CCccccccccCCCCCcCCCCCCcc
Confidence 999999999999999999999996
No 7
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.70 E-value=2.7e-17 Score=101.88 Aligned_cols=59 Identities=24% Similarity=0.496 Sum_probs=50.0
Q ss_pred CcccCCCcccCCCCCCCCC-c--CCCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294 2 KVMKCDLFNDSKSASTFAT-T--GVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH 66 (105)
Q Consensus 2 ~~~~CDg~~dC~~~d~sd~-~--~e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~ 66 (105)
+.|+|||+.|| .++||| . ....|.+..+|+|. +++||+. .|+|||+.||.|||||.+|.
T Consensus 20 ~~~~CDg~~DC--~DgsDE~~~C~~~~C~~~~~f~C~---~g~CI~~-~~~CDG~~DC~DgSDE~~C~ 81 (82)
T 2fyj_A 20 ISWTCDLDDDC--GDRSDESASCAYPTCFPLTQFTCN---NGRCINI-NWRCDNDNDCGDNSDEAGCS 81 (82)
T ss_dssp TTSSSSCSSSS--CSTTTTTSSCCCSSSCSSSEEECT---TSCEEET-TCBSSSSBCCSSSSSCSCCC
T ss_pred ccccCCCcccC--CCccccccccccccCCCCCceECC---CCCeEcH-HHccCCCCcCCCCccccCCC
Confidence 57999999999 899995 2 12346444899998 8999999 99999999999999999984
No 8
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=99.68 E-value=3.7e-17 Score=130.06 Aligned_cols=89 Identities=25% Similarity=0.418 Sum_probs=71.9
Q ss_pred cccCCCcccCCCCCCCCCcCCCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCceecCCCC
Q psy1294 3 VMKCDLFNDSKSASTFATTGVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGE 82 (105)
Q Consensus 3 ~~~CDg~~dC~~~d~sd~~~e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~C~~g~ 82 (105)
.+.+|+..+| .+.++ .|....+|+|. +++||+. .|+|||+.||.|+|||.+|.. |++ .+|+|.++.
T Consensus 187 ~h~~DagV~C--~~~~~-----~c~~~~~~~C~---~~~ci~~-~~~Cdg~~dC~d~sDE~~C~~--c~~-~~~~C~~~~ 252 (565)
T 2xrc_A 187 GYQDFADVVC--YTQKA-----DSPMDDFFQCV---NGKYISQ-MKACDGINDCGDQSDELCCKA--CQG-KGFHCKSGV 252 (565)
T ss_dssp SSCCCCEEEB--CCC--------------CBCT---TSCBCCT-TSTTSSSCCSSSSSSSSSBSS--CSS-SCEEETTTE
T ss_pred ccccCCceec--ccccc-----CCCCcCeeECC---CCCccCH-HHcCCCcccCCCCcccccccc--cCC-CceecCCCc
Confidence 3567777777 43333 45544679998 8999999 999999999999999999974 888 899999999
Q ss_pred eEeCCcccCCCCCCCCCCCCCCC
Q psy1294 83 TYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 83 ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
||+..++|||..||.+++||.+|
T Consensus 253 C~~~~~~cdG~~dC~~gsDE~~C 275 (565)
T 2xrc_A 253 CIPSQYQCNGEVDCITGEDEVGC 275 (565)
T ss_dssp EECGGGTTSSSCCSSSCTTSSSC
T ss_pred ccCccccCCCcccCCCCccccCc
Confidence 99999999999999999999887
No 9
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.62 E-value=4e-16 Score=96.21 Aligned_cols=58 Identities=24% Similarity=0.526 Sum_probs=48.5
Q ss_pred CcccCCCcccCCCCCCCCCcCC--CCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcC--Cccc
Q psy1294 2 KVMKCDLFNDSKSASTFATTGV--EWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDE--KHCH 66 (105)
Q Consensus 2 ~~~~CDg~~dC~~~d~sd~~~e--~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE--~~C~ 66 (105)
+.|+|||+.|| .++|||... ..|.+ .+|+|. +++|||. .|+|||+.||.||||| .+|.
T Consensus 18 ~~~~CDg~~DC--~DgSDE~~C~~~~C~~-~~f~C~---~g~Ci~~-~~~CDg~~DC~dgsDE~~~~C~ 79 (80)
T 2fcw_B 18 RQFVCDSDRDC--LDGSDEASCPVLTCGP-ASFQCN---SSTCIPQ-LWACDNDPDCEDGSDEWPQRCR 79 (80)
T ss_dssp GGGTTSSSCCS--TTCTTTTTHHHHHCCT-TEEECT---TSCEEEG-GGTTSSSCCSTTCGGGCGGGC-
T ss_pred eecccCCcccC--CCcccccccccccCCc-eeeECC---CCCEEec-ccccCCCcCCCCCCCcCcccCC
Confidence 57999999999 999994321 13555 899998 8999999 9999999999999999 6663
No 10
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=99.33 E-value=2.1e-13 Score=83.98 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=51.8
Q ss_pred CCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCc---ccC-CCcCCCCceecCC--CCeEeCCcccC
Q psy1294 23 VEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKH---CHT-GTLPVVLSLQCGS--GETYTKEQHCN 91 (105)
Q Consensus 23 e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~---C~~-~~C~~~~~f~C~~--g~ci~~~~~CD 91 (105)
...|.+ .+|+|. .+++|||. .|+|||+.||.|||||.+ |.. .+|.+ .+|+|.+ +.||+..+...
T Consensus 6 ~~~C~~-~~f~C~--~~g~CIp~-~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~-~~f~c~~~~~~ci~~~~~gL 75 (80)
T 2kny_A 6 GKTCGP-SSFSCP--GTHVCVPE-RWLCDGDKDCADGADESIAAGCLYNSTGSG-SGSGSTEELRVRLASHLRKL 75 (80)
T ss_dssp SCCCSS-SEEECT--TSSCEEEH-HHHTTSSCCSSSSTTTSGGGTCSSSSTTTT-CSSCHHHHHHHHTTTTTTTT
T ss_pred CCCCCC-CceecC--CCCeEcCh-hhcCCCCCCCCCCCccccccCCCCCcccCc-ccchhhhHHHHHHHHHHHHH
Confidence 456876 899997 36899999 999999999999999985 652 57888 8999987 56887665443
No 11
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=99.32 E-value=8.9e-13 Score=70.04 Aligned_cols=36 Identities=28% Similarity=0.708 Sum_probs=32.6
Q ss_pred CCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294 26 CQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH 66 (105)
Q Consensus 26 C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~ 66 (105)
|.. .+|+|. +++||+. .|+|||+.||.|||||.+|+
T Consensus 2 C~~-~~f~C~---~g~Ci~~-~~~CDg~~DC~DgsDE~~C~ 37 (37)
T 1ajj_A 2 CSA-FEFHCL---SGECIHS-SWRCDGGPDCKDKSDEENCA 37 (37)
T ss_dssp CCT-TCEECT---TSCEECG-GGTTSSSCCSTTCGGGTTCC
T ss_pred CCC-CceEcC---CCCeech-hhccCCCCCCCCCccccCCC
Confidence 554 799998 8899999 99999999999999999883
No 12
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=99.31 E-value=1.8e-12 Score=70.98 Aligned_cols=39 Identities=33% Similarity=0.761 Sum_probs=34.9
Q ss_pred CCCCCCCCeEEecCCCC-CeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294 23 VEWCQSQGKVMCGIYPD-VQCYDNRTQACDSVADCDNMKDEKHCH 66 (105)
Q Consensus 23 e~~C~~~~~f~C~~~~~-~~Ci~~~~~~CDg~~DC~dgsDE~~C~ 66 (105)
...|.. .+|+|. + ++|||. .|+|||+.||.|||||.+|.
T Consensus 4 ~~~C~~-~~f~C~---~~g~CI~~-~~~CDg~~DC~DgSDE~~C~ 43 (43)
T 2jm4_A 4 DVKCSL-GYFPCG---NITKCLPQ-LLHCNGVDDCGNQADEDNCG 43 (43)
T ss_dssp SCSCCT-TEEECS---SSSCEEEG-GGTTSSCCCSSSCCTTSSCC
T ss_pred CCCCCC-CeeECC---CCCeEcCH-hhccCCCCCCCCCcccCCCC
Confidence 456876 899998 5 899999 99999999999999999883
No 13
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=99.31 E-value=7.8e-13 Score=70.27 Aligned_cols=35 Identities=40% Similarity=0.757 Sum_probs=32.9
Q ss_pred cCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 70 LPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 70 C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
|++ .+|+|.+|+||++.++|||+.||.|||||.+|
T Consensus 2 C~~-~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 36 (37)
T 1ajj_A 2 CSA-FEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36 (37)
T ss_dssp CCT-TCEECTTSCEECGGGTTSSSCCSTTCGGGTTC
T ss_pred CCC-CceEcCCCCeechhhccCCCCCCCCCccccCC
Confidence 566 89999999999999999999999999999987
No 14
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.30 E-value=1.2e-13 Score=98.80 Aligned_cols=65 Identities=25% Similarity=0.331 Sum_probs=53.4
Q ss_pred CcccCCCCCCCCCcCCCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCceec
Q psy1294 8 LFNDSKSASTFATTGVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQC 78 (105)
Q Consensus 8 g~~dC~~~d~sd~~~e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~C 78 (105)
++.+| .+++||.....|.+ .+|+|.. .+++|||. .|+|||..||.|||||.+|+..+|.+ .+|+|
T Consensus 39 ~~~~c--~d~sDE~~C~~C~~-~~F~C~~-~~g~CIp~-~~~CDG~~DC~DgSDE~~C~~~~C~~-~~F~c 103 (215)
T 2gtl_O 39 KAGSL--RHRVEELEDPSCDE-HEHQCGG-DDPQCISK-LFVCDGHNDCRNGEDEKDCTLPTKAG-DKFIG 103 (215)
T ss_dssp HHHHH--HHHHHHHSCCSSCT-TEEECCS-SSCCEEEG-GGTTSSSCCSSSCHHHHCCCCSSCTT-CEEEE
T ss_pred ccccC--CcchhhccCCCCCC-cceeeCC-CCCcCccc-cccCCCCCcCCCcccccCCCCCCcCC-Cceee
Confidence 35678 78888665566775 8999930 18999999 99999999999999999998777877 78876
No 15
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=99.30 E-value=4.8e-12 Score=71.47 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=37.4
Q ss_pred CCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCC
Q psy1294 23 VEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPV 72 (105)
Q Consensus 23 e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~ 72 (105)
...|.+ .+|+|. .+++||+. .|+|||+.||.|||||.+|. .|.+
T Consensus 4 ~~~C~~-~~F~C~--~~g~CI~~-~~~CDG~~DC~DgSDE~~C~--~C~~ 47 (50)
T 2knx_A 4 GKTCGP-SSFSCP--GTHVCVPE-RWLCDGDKDCADGADESIAA--GCLY 47 (50)
T ss_dssp TCTTCT-TEEEET--TTTEEEET-TTTTSSSCCSTTCGGGSGGG--TCCC
T ss_pred CCCCCC-CcEEcC--CCCeEcCh-hhcCCCCCCCCCCCcccccc--CCCC
Confidence 456876 899995 38999999 99999999999999999985 3553
No 16
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.30 E-value=2.2e-12 Score=70.30 Aligned_cols=38 Identities=32% Similarity=0.648 Sum_probs=33.9
Q ss_pred CCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294 25 WCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH 66 (105)
Q Consensus 25 ~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~ 66 (105)
.|.. .+|+|. .+++|||. .|+|||+.||.|||||.+|.
T Consensus 3 ~C~~-~~F~C~--~~g~CI~~-~~~CDg~~DC~DgSDE~~C~ 40 (42)
T 1cr8_A 3 GCHT-DEFQCR--LDGLCIPL-RWRCDGDTDCMDSSDEKSCE 40 (42)
T ss_dssp CSST-TCEECT--TTCCEECG-GGSSSSSCCSSSSTTTTTCC
T ss_pred CCCC-CceEeC--CCCeEcCh-hhcCCCCcCCCCCCcccCCC
Confidence 4765 899997 36899999 99999999999999999885
No 17
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=99.29 E-value=2.4e-12 Score=70.49 Aligned_cols=36 Identities=33% Similarity=0.693 Sum_probs=33.5
Q ss_pred CcCCCCceecCC-CCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 69 TLPVVLSLQCGS-GETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 69 ~C~~~~~f~C~~-g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
.|++ .+|+|.+ ++||++.++|||+.||.|||||.+|
T Consensus 6 ~C~~-~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C 42 (43)
T 2jm4_A 6 KCSL-GYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42 (43)
T ss_dssp SCCT-TEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSC
T ss_pred CCCC-CeeECCCCCeEcCHhhccCCCCCCCCCcccCCC
Confidence 5677 8999999 8999999999999999999999987
No 18
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=99.28 E-value=2.7e-12 Score=70.60 Aligned_cols=38 Identities=26% Similarity=0.675 Sum_probs=33.1
Q ss_pred CCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294 24 EWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH 66 (105)
Q Consensus 24 ~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~ 66 (105)
..|.. .+|+|. +++||+. .|+|||+.||.|||||.+|.
T Consensus 6 ~~C~~-~~f~C~---~g~CI~~-~~~CDg~~DC~DgSDE~~C~ 43 (44)
T 3a7q_B 6 KECEK-DQFQCR---NERCIPS-VWRCDEDDDCLDHSDEDDCP 43 (44)
T ss_dssp --CCT-TEEECT---TSCEEEG-GGTTSSSCCSSSSTTTSCC-
T ss_pred CCCCC-CceEcC---CCCEeCh-hhccCCCCCCCCCccccCCC
Confidence 45776 899998 8999999 99999999999999999884
No 19
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=99.27 E-value=2.7e-12 Score=70.58 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=33.2
Q ss_pred CcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 69 TLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 69 ~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
.|.. .+|+|.+++||+..++|||+.||.|+|||.+|
T Consensus 7 ~C~~-~~f~C~~g~CI~~~~~CDg~~DC~DgSDE~~C 42 (44)
T 3a7q_B 7 ECEK-DQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42 (44)
T ss_dssp -CCT-TEEECTTSCEEEGGGTTSSSCCSSSSTTTSCC
T ss_pred CCCC-CceEcCCCCEeChhhccCCCCCCCCCccccCC
Confidence 4677 89999999999999999999999999999987
No 20
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=99.26 E-value=2.5e-12 Score=71.61 Aligned_cols=42 Identities=31% Similarity=0.679 Sum_probs=33.9
Q ss_pred CCCCCCCCeEEecCC--CCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294 23 VEWCQSQGKVMCGIY--PDVQCYDNRTQACDSVADCDNMKDEKHCH 66 (105)
Q Consensus 23 e~~C~~~~~f~C~~~--~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~ 66 (105)
...|.+ .+|+|..+ .+++|||. .|+|||+.||.|||||.+|+
T Consensus 4 ~~~C~~-~~F~C~~~~~~~g~CIp~-~~~CDG~~DC~DgSDE~~C~ 47 (47)
T 1k7b_A 4 FGSCPP-GQFRCSEPPGAHGECYPQ-DWLCDGHPDCDDGRDEWGCG 47 (47)
T ss_dssp --CCST-TEECCSSCTTSCCCCEEG-GGSSCSSCCSSSSTTTGGGC
T ss_pred CCCCCC-CceEcCCCCCCCCcCCCc-cccCCCcCCCCCCcccCCCC
Confidence 345875 89999710 16899999 99999999999999999883
No 21
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.26 E-value=4.1e-12 Score=70.27 Aligned_cols=38 Identities=29% Similarity=0.648 Sum_probs=34.3
Q ss_pred CCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcc
Q psy1294 23 VEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHC 65 (105)
Q Consensus 23 e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C 65 (105)
+..|.. .+|+|. +++||+. .|+|||+.||.|||||.+|
T Consensus 3 ~~~C~~-~~F~C~---~g~CI~~-~~~CDG~~DC~DgSDE~~c 40 (45)
T 1d2l_A 3 PPQCQP-GEFACA---NSRCIQE-RWKCDGDNDCLDNSDEAPA 40 (45)
T ss_dssp CCBTTB-TCEEET---TTEEECG-GGTTTSSCTTTTCSTTSTT
T ss_pred CCcCCC-CceEcC---CCCeEeh-hhccCCCCCCCCCCCCCCC
Confidence 346865 899998 8999999 9999999999999999987
No 22
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.26 E-value=3.2e-12 Score=70.70 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=33.3
Q ss_pred CcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 69 TLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 69 ~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
.|++ .+|+|.+|+||++.++|||+.||.|||||.+|
T Consensus 5 ~C~~-~~F~C~~g~CI~~~~~CDG~~DC~DgSDE~~c 40 (45)
T 1d2l_A 5 QCQP-GEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40 (45)
T ss_dssp BTTB-TCEEETTTEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred cCCC-CceEcCCCCeEehhhccCCCCCCCCCCCCCCC
Confidence 5676 89999999999999999999999999999875
No 23
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=99.25 E-value=2.9e-12 Score=68.80 Aligned_cols=35 Identities=34% Similarity=0.778 Sum_probs=31.0
Q ss_pred CeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294 30 GKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH 66 (105)
Q Consensus 30 ~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~ 66 (105)
.+|+|.. ++++|||. .|+|||+.||.|||||.+|+
T Consensus 4 ~~f~C~~-~~g~Cip~-~~~CDg~~DC~dgsDE~~C~ 38 (39)
T 3dpr_E 4 HEISCGA-HSTQCIPV-SWRCDGENDCDSGEDEENCG 38 (39)
T ss_dssp TTCCCSS-SSSCCCCT-TSSSSSSCCSTTTTTSTTCC
T ss_pred CceecCC-CCCCEeCc-cccCCCcccCcCCcccccCC
Confidence 7899981 13899999 99999999999999999885
No 24
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.25 E-value=4.8e-12 Score=68.95 Aligned_cols=36 Identities=33% Similarity=0.588 Sum_probs=32.9
Q ss_pred CcCCCCceecC-CCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 69 TLPVVLSLQCG-SGETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 69 ~C~~~~~f~C~-~g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
.|.+ .+|+|. +++||++.++|||+.||.|||||.+|
T Consensus 3 ~C~~-~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C 39 (42)
T 1cr8_A 3 GCHT-DEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39 (42)
T ss_dssp CSST-TCEECTTTCCEECGGGSSSSSCCSSSSTTTTTC
T ss_pred CCCC-CceEeCCCCeEcChhhcCCCCcCCCCCCcccCC
Confidence 5677 899998 48999999999999999999999987
No 25
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=99.23 E-value=4e-12 Score=72.34 Aligned_cols=39 Identities=31% Similarity=0.714 Sum_probs=35.3
Q ss_pred CCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294 23 VEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH 66 (105)
Q Consensus 23 e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~ 66 (105)
...|.. .+|+|. +++||+. .|+|||+.||.|||||.++.
T Consensus 4 p~~C~~-~~F~C~---nG~CIp~-~~~CDG~~DC~DgSDE~~~~ 42 (52)
T 2m0p_A 4 PASCLD-TQYTCD---NHQCISK-NWVCDTDNDCGDGSDEKNCN 42 (52)
T ss_dssp CCSSCS-SEEECT---TCCEEET-TSTTSSSCSSSSCHHHHSCC
T ss_pred CCCCCC-CceECC---CCCEEec-CccCCCCCCCCCCCccccch
Confidence 456876 899998 8999999 99999999999999999884
No 26
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=99.23 E-value=4.8e-12 Score=69.60 Aligned_cols=38 Identities=29% Similarity=0.658 Sum_probs=34.1
Q ss_pred CCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcc
Q psy1294 23 VEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHC 65 (105)
Q Consensus 23 e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C 65 (105)
...|.. .+|+|. +++|||. .|+|||+.||.|||||.+|
T Consensus 2 ~~~C~~-~~F~C~---~g~CI~~-~~~CDg~~DC~DgSDE~~~ 39 (44)
T 1j8e_A 2 SHSCSS-TQFKCN---SGRCIPE-HWTCDGDNDCGDYSDETHA 39 (44)
T ss_dssp CSSSCT-TEEECT---TSCEEEG-GGTTSSSCCSSSSGGGSHH
T ss_pred CCCCCC-CceEeC---CCCeEec-CcccCCCCCCCCCCCCCCc
Confidence 346776 899998 8999999 9999999999999999876
No 27
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=99.22 E-value=4.2e-12 Score=70.71 Aligned_cols=36 Identities=39% Similarity=0.881 Sum_probs=33.0
Q ss_pred CcCCCCceecC-----CCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 69 TLPVVLSLQCG-----SGETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 69 ~C~~~~~f~C~-----~g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
.|++ .+|+|. +++||+..|+|||+.||.|||||.+|
T Consensus 6 ~C~~-~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~C 46 (47)
T 1k7b_A 6 SCPP-GQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46 (47)
T ss_dssp CCST-TEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred CCCC-CceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCCC
Confidence 5677 899998 78999999999999999999999886
No 28
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=99.21 E-value=1.9e-12 Score=72.09 Aligned_cols=41 Identities=32% Similarity=0.709 Sum_probs=34.4
Q ss_pred CCCCCCCeEEecC--CCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294 24 EWCQSQGKVMCGI--YPDVQCYDNRTQACDSVADCDNMKDEKHCH 66 (105)
Q Consensus 24 ~~C~~~~~f~C~~--~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~ 66 (105)
..|.. .+|+|.. ..+++|||. .|+|||+.||.|||||.+|.
T Consensus 3 ~~C~~-~~F~C~~~~~~~~~CIp~-~~~CDG~~DC~DgSDE~~C~ 45 (47)
T 1jrf_A 3 SRCPP-GQFRCSEPPGAHGECYPQ-DWLCDGHPDCDDGRDEWGCG 45 (47)
T ss_dssp CCCCC-CCSCSSSCSCCCTTTSGG-GGSSSSSCCSSSSCTTHHHH
T ss_pred CCCCC-CeeECCCCCCCCCeEcCH-hhcCCCCcCCCCCcccccCC
Confidence 45775 8999971 016899999 99999999999999999885
No 29
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=2.9e-12 Score=72.90 Aligned_cols=37 Identities=30% Similarity=0.556 Sum_probs=33.8
Q ss_pred CCcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 68 GTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 68 ~~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
..|++ .+|+|.+|+||++.|+|||..||.|||||.+|
T Consensus 5 ~~C~~-~~F~C~nG~CIp~~~~CDG~~DC~DgSDE~~~ 41 (52)
T 2m0p_A 5 ASCLD-TQYTCDNHQCISKNWVCDTDNDCGDGSDEKNC 41 (52)
T ss_dssp CSSCS-SEEECTTCCEEETTSTTSSSCSSSSCHHHHSC
T ss_pred CCCCC-CceECCCCCEEecCccCCCCCCCCCCCccccc
Confidence 35777 99999999999999999999999999999764
No 30
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=99.21 E-value=6.6e-12 Score=67.35 Aligned_cols=35 Identities=29% Similarity=0.719 Sum_probs=31.8
Q ss_pred cCCCCceecCC--CCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 70 LPVVLSLQCGS--GETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 70 C~~~~~f~C~~--g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
|++ .+|+|.+ ++||+.+|+|||+.||.|+|||.+|
T Consensus 1 C~~-~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C 37 (39)
T 3dpr_E 1 CRI-HEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37 (39)
T ss_dssp CCT-TTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTC
T ss_pred CCC-CceecCCCCCCEeCccccCCCcccCcCCcccccC
Confidence 345 8999997 7999999999999999999999987
No 31
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=99.17 E-value=4.6e-12 Score=70.88 Aligned_cols=36 Identities=33% Similarity=0.798 Sum_probs=33.5
Q ss_pred CcCCCCceecCCC-CeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 69 TLPVVLSLQCGSG-ETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 69 ~C~~~~~f~C~~g-~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
.|.+ .+|+|.++ +||++.++|||+.||.|||||.+|
T Consensus 6 ~C~~-~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C 42 (48)
T 2i1p_A 6 NCTS-AQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42 (48)
T ss_dssp CCCS-SSEECSSSSCEECGGGSSSSSCCSSSSHHHHSS
T ss_pred CCCC-CeeECCCCCEeCCHhhcCCCCCCCCCCcccccC
Confidence 5777 89999999 899999999999999999999876
No 32
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=99.16 E-value=7.6e-12 Score=69.96 Aligned_cols=38 Identities=34% Similarity=0.734 Sum_probs=34.1
Q ss_pred CCCCCCCeEEecCCCCC-eeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294 24 EWCQSQGKVMCGIYPDV-QCYDNRTQACDSVADCDNMKDEKHCH 66 (105)
Q Consensus 24 ~~C~~~~~f~C~~~~~~-~Ci~~~~~~CDg~~DC~dgsDE~~C~ 66 (105)
..|.+ .+|+|. ++ +||+. .|+|||+.||.|||||.+|.
T Consensus 5 ~~C~~-~~F~C~---~g~~CI~~-~~~CDG~~DC~DgSDE~~C~ 43 (48)
T 2i1p_A 5 LNCTS-AQFKCA---DGSSCINS-RYRCDGVYDCRDNSDEAGCP 43 (48)
T ss_dssp CCCCS-SSEECS---SSSCEECG-GGSSSSSCCSSSSHHHHSSC
T ss_pred CCCCC-CeeECC---CCCEeCCH-hhcCCCCCCCCCCcccccCC
Confidence 45775 899998 66 89999 99999999999999999996
No 33
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=99.14 E-value=8.6e-12 Score=68.56 Aligned_cols=35 Identities=34% Similarity=0.634 Sum_probs=32.6
Q ss_pred CcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCC
Q psy1294 69 TLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMH 104 (105)
Q Consensus 69 ~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~ 104 (105)
.|++ .+|+|.+++||+..++|||+.||.|+|||.+
T Consensus 4 ~C~~-~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~ 38 (44)
T 1j8e_A 4 SCSS-TQFKCNSGRCIPEHWTCDGDNDCGDYSDETH 38 (44)
T ss_dssp SSCT-TEEECTTSCEEEGGGTTSSSCCSSSSGGGSH
T ss_pred CCCC-CceEeCCCCeEecCcccCCCCCCCCCCCCCC
Confidence 5777 8999999999999999999999999999975
No 34
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=99.14 E-value=1.6e-11 Score=69.27 Aligned_cols=36 Identities=31% Similarity=0.484 Sum_probs=32.4
Q ss_pred CcCCCCceecC-CCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 69 TLPVVLSLQCG-SGETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 69 ~C~~~~~f~C~-~g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
.|.+ .+|+|. +++||++.|+|||+.||.|||||.+|
T Consensus 6 ~C~~-~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~C 42 (50)
T 2knx_A 6 TCGP-SSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42 (50)
T ss_dssp TTCT-TEEEETTTTEEEETTTTTSSSCCSTTCGGGSGG
T ss_pred CCCC-CcEEcCCCCeEcChhhcCCCCCCCCCCCccccc
Confidence 4667 899995 88999999999999999999999864
No 35
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.13 E-value=1.1e-12 Score=93.73 Aligned_cols=51 Identities=24% Similarity=0.421 Sum_probs=46.2
Q ss_pred CCCCCCCCCcCCcccCCCcCCCCceec--CCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 52 SVADCDNMKDEKHCHTGTLPVVLSLQC--GSGETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 52 g~~DC~dgsDE~~C~~~~C~~~~~f~C--~~g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
...+|.+++||.+|. .|++ .+|+| .+|+|||..|+|||..||.|||||.+|
T Consensus 39 ~~~~c~d~sDE~~C~--~C~~-~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~C 91 (215)
T 2gtl_O 39 KAGSLRHRVEELEDP--SCDE-HEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 91 (215)
T ss_dssp HHHHHHHHHHHHSCC--SSCT-TEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCC
T ss_pred ccccCCcchhhccCC--CCCC-cceeeCCCCCcCccccccCCCCCcCCCcccccCC
Confidence 345899999999995 5998 99999 789999999999999999999999876
No 36
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=99.12 E-value=6.4e-12 Score=69.90 Aligned_cols=36 Identities=39% Similarity=0.865 Sum_probs=32.5
Q ss_pred CcCCCCceecC-----CCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 69 TLPVVLSLQCG-----SGETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 69 ~C~~~~~f~C~-----~g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
.|++ .+|+|. +++||+..|+|||+.||.|||||.+|
T Consensus 4 ~C~~-~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C 44 (47)
T 1jrf_A 4 RCPP-GQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44 (47)
T ss_dssp CCCC-CCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHH
T ss_pred CCCC-CeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccC
Confidence 5777 899998 67899999999999999999999765
No 37
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=99.07 E-value=5.5e-11 Score=73.09 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=35.2
Q ss_pred cccCCCcCCCCceecC-CCCeEeCCcccCCCCCCCCCCCCCC
Q psy1294 64 HCHTGTLPVVLSLQCG-SGETYTKEQHCNGVLDCKDGSDEMH 104 (105)
Q Consensus 64 ~C~~~~C~~~~~f~C~-~g~ci~~~~~CDg~~dC~dgsDE~~ 104 (105)
+|+...|++ .+|+|. +++|||..|+|||+.||.|||||.+
T Consensus 3 ~C~~~~C~~-~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~ 43 (80)
T 2kny_A 3 KLEGKTCGP-SSFSCPGTHVCVPERWLCDGDKDCADGADESI 43 (80)
T ss_dssp SCSSCCCSS-SEEECTTSSCEEEHHHHTTSSCCSSSSTTTSG
T ss_pred CCCCCCCCC-CceecCCCCeEcChhhcCCCCCCCCCCCcccc
Confidence 465567888 999998 6799999999999999999999973
No 38
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=99.05 E-value=2e-10 Score=91.33 Aligned_cols=59 Identities=24% Similarity=0.447 Sum_probs=51.1
Q ss_pred CcccCCCcccCCCCCCCCCcCCCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccC
Q psy1294 2 KVMKCDLFNDSKSASTFATTGVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHT 67 (105)
Q Consensus 2 ~~~~CDg~~dC~~~d~sd~~~e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~ 67 (105)
+.|+|||+.|| .|+|||.....|.+ .+|+|. ++.||+. .++|||..||.+|+||.+|..
T Consensus 219 ~~~~Cdg~~dC--~d~sDE~~C~~c~~-~~~~C~---~~~C~~~-~~~cdG~~dC~~gsDE~~C~~ 277 (565)
T 2xrc_A 219 QMKACDGINDC--GDQSDELCCKACQG-KGFHCK---SGVCIPS-QYQCNGEVDCITGEDEVGCAG 277 (565)
T ss_dssp TTSTTSSSCCS--SSSSSSSSBSSCSS-SCEEET---TTEEECG-GGTTSSSCCSSSCTTSSSCC-
T ss_pred HHHcCCCcccC--CCCcccccccccCC-CceecC---CCcccCc-cccCCCcccCCCCccccCcCC
Confidence 57999999999 99999655545665 799998 8889999 999999999999999999853
No 39
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.03 E-value=2e-10 Score=82.12 Aligned_cols=60 Identities=22% Similarity=0.439 Sum_probs=47.7
Q ss_pred CCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCC--cccCC-CcCCCCce--ecCCCCeEeC
Q psy1294 23 VEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEK--HCHTG-TLPVVLSL--QCGSGETYTK 86 (105)
Q Consensus 23 e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~--~C~~~-~C~~~~~f--~C~~g~ci~~ 86 (105)
+..|.. .+|+|.. .+++|||. .|+|||..||.|||||. +|... +|.+ .+| +|.++.|+..
T Consensus 50 ~~~C~~-~eFqC~~-~~g~CIp~-~wvCDG~~DC~DGSDE~~~~C~~~~tc~~-~qF~g~~~~d~C~kr 114 (220)
T 2gtl_N 50 GTHCEK-RTFQCGG-NEQECISD-LLVCDGHKDCHNAHDEDPDVCDTSVVKAG-NVFSGTSTWHGCLAR 114 (220)
T ss_dssp CCSSCT-TEEECCS-SSCCEEET-TTTTSSSCCSTTCTTSCGGGGCGGGGCTT-CEEEEEEEECSSCCC
T ss_pred CCCCCC-CccCcCC-CCCcEeCc-ceecCCCCCCCCCCccCcccCCCCCccCC-cceeeEecCChhhcC
Confidence 567987 8999951 26899999 99999999999999996 89776 6766 565 4666666654
No 40
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.83 E-value=2.6e-09 Score=76.46 Aligned_cols=42 Identities=24% Similarity=0.540 Sum_probs=36.1
Q ss_pred CCCCCCCCCeEEecCCC-CCeeeeCCCCCcCCCCCCCCCCcCC--cccC
Q psy1294 22 GVEWCQSQGKVMCGIYP-DVQCYDNRTQACDSVADCDNMKDEK--HCHT 67 (105)
Q Consensus 22 ~e~~C~~~~~f~C~~~~-~~~Ci~~~~~~CDg~~DC~dgsDE~--~C~~ 67 (105)
....|.+ .+|+|. + +++|||. .|+|||..||.|||||. +|..
T Consensus 50 ~~~~C~~-~~F~C~--~~~g~CI~~-~~~CDG~~DC~DgSDE~~~~C~~ 94 (217)
T 2gtl_M 50 EEHHCDE-HESECR--GDVPECIHD-LLFCDGEKDCRDGSDEDPETCSL 94 (217)
T ss_dssp SCCCCCT-TEEECS--SSSCCEEEG-GGTTSSSCCSSSSTTTSHHHHCC
T ss_pred CCCCCCC-CceecC--CCCCcEech-hhccCCCCCCCCCCccccCcCCC
Confidence 3557886 899996 2 5899999 99999999999999998 7864
No 41
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.59 E-value=1.6e-08 Score=72.34 Aligned_cols=35 Identities=31% Similarity=0.510 Sum_probs=31.7
Q ss_pred CCcCCCCceecCC--CCeEeCCcccCCCCCCCCCCCCC
Q psy1294 68 GTLPVVLSLQCGS--GETYTKEQHCNGVLDCKDGSDEM 103 (105)
Q Consensus 68 ~~C~~~~~f~C~~--g~ci~~~~~CDg~~dC~dgsDE~ 103 (105)
..|++ .+|+|.+ |+||+..|+|||..||.|||||.
T Consensus 52 ~~C~~-~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~ 88 (217)
T 2gtl_M 52 HHCDE-HESECRGDVPECIHDLLFCDGEKDCRDGSDED 88 (217)
T ss_dssp CCCCT-TEEECSSSSCCEEEGGGTTSSSCCSSSSTTTS
T ss_pred CCCCC-CceecCCCCCcEechhhccCCCCCCCCCCccc
Confidence 35777 8999965 89999999999999999999996
No 42
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.54 E-value=5e-08 Score=69.71 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=31.1
Q ss_pred CCcCCCCceecC--CCCeEeCCcccCCCCCCCCCCCCC
Q psy1294 68 GTLPVVLSLQCG--SGETYTKEQHCNGVLDCKDGSDEM 103 (105)
Q Consensus 68 ~~C~~~~~f~C~--~g~ci~~~~~CDg~~dC~dgsDE~ 103 (105)
..|++ .+|+|. +|+||+..|+|||..||.|||||.
T Consensus 51 ~~C~~-~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~ 87 (220)
T 2gtl_N 51 THCEK-RTFQCGGNEQECISDLLVCDGHKDCHNAHDED 87 (220)
T ss_dssp CSSCT-TEEECCSSSCCEEETTTTTSSSCCSTTCTTSC
T ss_pred CCCCC-CccCcCCCCCcEeCcceecCCCCCCCCCCccC
Confidence 35677 899995 579999999999999999999996
No 43
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.51 E-value=1e-07 Score=75.66 Aligned_cols=47 Identities=19% Similarity=0.521 Sum_probs=38.3
Q ss_pred CeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCceecCCCCeEe
Q psy1294 30 GKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYT 85 (105)
Q Consensus 30 ~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~C~~g~ci~ 85 (105)
.+|+|. .+|+||+. .|+|||..||.|+|||.+|.. ..+.|....+++
T Consensus 69 ~~f~C~--~~g~Ci~~-~~~Cdg~~dC~d~sdE~~c~~------~~~~C~~~~~~~ 115 (537)
T 3ojy_B 69 EGFVCA--QTGRCVNR-RLLCNGDNDCGDQSDEANCRR------IYKKCQHEMDQY 115 (537)
T ss_dssp SSEECT--TTCCEECG-GGTTSSSCCSSSSCTTSSCSS------CSSCCSSCCBCC
T ss_pred CccCcC--CCCcEeec-cccCCCCCCCCCccccccCCC------CCCccccCcCCC
Confidence 589996 37999999 999999999999999999863 345666555555
No 44
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.39 E-value=2.5e-07 Score=73.47 Aligned_cols=62 Identities=26% Similarity=0.503 Sum_probs=43.6
Q ss_pred eeeCCCCCcCCCCCCC-CCCcCCcccC-CCcCCC---CceecC-CCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 42 CYDNRTQACDSVADCD-NMKDEKHCHT-GTLPVV---LSLQCG-SGETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 42 Ci~~~~~~CDg~~DC~-dgsDE~~C~~-~~C~~~---~~f~C~-~g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
.|.. .....| ..|. ...|+..|.. ..|+.+ .+|+|. +|+||+..|+|||..||.|+|||.+|
T Consensus 34 ~v~~-p~q~gG-~~C~~~l~d~~~C~~~~~C~~~~~c~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sdE~~c 101 (537)
T 3ojy_B 34 YLLQ-PSQFHG-EPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANC 101 (537)
T ss_dssp CEEE-CEETTC-CCCCSCSEEEEECCCCCCCCCCSCCSSEECTTTCCEECGGGTTSSSCCSSSSCTTSSC
T ss_pred eecc-ccccCC-CcCccchhhhccCCCccccccCCCCCccCcCCCCcEeeccccCCCCCCCCCccccccC
Confidence 4444 334333 4455 3466666743 334221 479999 89999999999999999999999987
No 45
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.35 E-value=5.8e-07 Score=71.70 Aligned_cols=72 Identities=29% Similarity=0.479 Sum_probs=49.4
Q ss_pred CCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCC-CcCCcccC-CCcCCC----CceecC-CCCeEeCCcccCCCCCCC
Q psy1294 25 WCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNM-KDEKHCHT-GTLPVV----LSLQCG-SGETYTKEQHCNGVLDCK 97 (105)
Q Consensus 25 ~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dg-sDE~~C~~-~~C~~~----~~f~C~-~g~ci~~~~~CDg~~dC~ 97 (105)
.|.. .+++-. .|.. .....| ..|... .|+..|.. ..|+.+ .+|+|. +|+||+..++|||..||.
T Consensus 22 ~C~~-~~~R~R------~v~~-p~q~gG-~~C~~~l~d~~~C~~~~~c~~~~~c~~~f~C~~~g~Ci~~~~~Cdg~~dC~ 92 (554)
T 3ojy_A 22 PCQD-KKYRHR------SLLQ-PNKFGG-TICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCL 92 (554)
T ss_dssp TTTC-EEEEEC------CEEE-CBCSSC-CCCCSCSEEEEECCCCCCC--CCCCSSSEECSSSCCEECGGGTTSSSCCSS
T ss_pred CCCC-ccEeeE------eecc-ccccCC-CCCCCccccccCCCCCCCCcccCCCCCcCccCCCCEEcccccccCCcccCC
Confidence 4553 455543 4554 445444 447654 56666743 233321 589999 899999999999999999
Q ss_pred CCCCCCCC
Q psy1294 98 DGSDEMHC 105 (105)
Q Consensus 98 dgsDE~~C 105 (105)
|+|||.+|
T Consensus 93 d~sDE~~C 100 (554)
T 3ojy_A 93 DGSDEDDC 100 (554)
T ss_dssp SCTTSSSC
T ss_pred CccccccC
Confidence 99999887
No 46
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.28 E-value=7.8e-07 Score=70.95 Aligned_cols=35 Identities=23% Similarity=0.575 Sum_probs=32.0
Q ss_pred CeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccC
Q psy1294 30 GKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHT 67 (105)
Q Consensus 30 ~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~ 67 (105)
.+|+|. .+++||+. .|+|||..||.|+|||.+|..
T Consensus 68 ~~f~C~--~~g~Ci~~-~~~Cdg~~dC~d~sDE~~C~~ 102 (554)
T 3ojy_A 68 QDFQCK--ETGRCLKR-HLVCNGDQDCLDGSDEDDCED 102 (554)
T ss_dssp SSEECS--SSCCEECG-GGTTSSSCCSSSCTTSSSCCS
T ss_pred CcCccC--CCCEEccc-ccccCCcccCCCccccccCCC
Confidence 689996 37999999 999999999999999999964
No 47
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=97.83 E-value=1.2e-05 Score=67.27 Aligned_cols=32 Identities=41% Similarity=0.848 Sum_probs=30.3
Q ss_pred CceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294 74 LSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105 (105)
Q Consensus 74 ~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C 105 (105)
..|+|.+|+||+..++|||..||.|+|||.+|
T Consensus 121 ~~F~C~~g~ci~~~~~c~g~~dC~d~sde~~C 152 (913)
T 3t5o_A 121 NKFRCDSGRCIARKLECNGENDCGDNSDERDC 152 (913)
T ss_dssp SEEECTTSCEEEGGGSSSSSCCSSSSGGGTTC
T ss_pred cccccCCCceEccceecCCcccCCCccccccC
Confidence 46999999999999999999999999999887
No 48
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=97.76 E-value=2.2e-05 Score=65.62 Aligned_cols=34 Identities=26% Similarity=0.698 Sum_probs=31.7
Q ss_pred CeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccC
Q psy1294 30 GKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHT 67 (105)
Q Consensus 30 ~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~ 67 (105)
..|+|. +|+||+. .|+|||..||.|+|||.+|..
T Consensus 121 ~~F~C~---~g~ci~~-~~~c~g~~dC~d~sde~~C~~ 154 (913)
T 3t5o_A 121 NKFRCD---SGRCIAR-KLECNGENDCGDNSDERDCGR 154 (913)
T ss_dssp SEEECT---TSCEEEG-GGSSSSSCCSSSSGGGTTCSS
T ss_pred cccccC---CCceEcc-ceecCCcccCCCccccccCCC
Confidence 579998 8999999 999999999999999999964
Done!