RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1294
(105 letters)
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 45.0 bits (107), Expect = 8e-08
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 45 NRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMH 104
+R CDS DC + DE C T S QC S + C+ DC+DGSDE
Sbjct: 17 SRQFVCDSDRDCLDGSDEASCPVLTCGP-ASFQCNSSTCIPQLWACDNDPDCEDGSDEWP 75
Query: 105 C 105
Sbjct: 76 Q 76
Score = 35.3 bits (82), Expect = 4e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 77 QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
+C G+ +++ C+ DC DGSDE C
Sbjct: 9 RCHDGKCISRQFVCDSDRDCLDGSDEASC 37
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module,
complement type repeat, calcium, beta-2 hairpin,
loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Length = 82
Score = 43.0 bits (102), Expect = 4e-07
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 50 CDSVADCDNMKDEKHCHTG-TLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
CD DC + DE T + C +G C+ DC D SDE C
Sbjct: 24 CDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDEAGC 80
Score = 33.0 bits (76), Expect = 0.003
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 77 QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
C SG C+ DC D SDE
Sbjct: 11 SCASGRCIPISWTCDLDDDCGDRSDESAS 39
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 44.5 bits (105), Expect = 1e-06
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 50 CDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
D ++ + QC +G+ ++ + C+G+ DC D SDE+ C
Sbjct: 185 TMGYQDFADVVCYTQKADSPMD--DFFQCVNGKYISQMKACDGINDCGDQSDELCC 238
Score = 41.8 bits (98), Expect = 8e-06
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 46 RTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
+ +ACD + DC + DE C C SG + CNG +DC G DE+ C
Sbjct: 219 QMKACDGINDCGDQSDELCCKA---CQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGC 275
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 42.9 bits (100), Expect = 3e-06
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 45 NRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMH 104
+ CD DCDN DE+ C T +C G+ +++ C+ DC DGSDE
Sbjct: 63 PQFWRCDGQVDCDNGSDEQGCPPKTCSQ-DEFRCHDGKCISRQFVCDSDRDCLDGSDEAS 121
Query: 105 C 105
C
Sbjct: 122 C 122
Score = 39.4 bits (91), Expect = 6e-05
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 45 NRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMH 104
+ + CD DC + DE++C T QC G + C+ DCKD SDE+
Sbjct: 190 HSSWRCDGGPDCKDKSDEENCAVATCRP-DEFQCSDGNCIHGSRQCDREYDCKDMSDEVG 248
Query: 105 C 105
C
Sbjct: 249 C 249
Score = 39.0 bits (90), Expect = 7e-05
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 46 RTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
R CDS DC + DE C T S QC S + C+ DC+DGSDE
Sbjct: 103 RQFVCDSDRDCLDGSDEASCPVLTCGPA-SFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 161
Score = 39.0 bits (90), Expect = 8e-05
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 46 RTQACDSVADCDNMKDEKHCHTGTLPVVLSL-QCGSGETYTKEQHCNGVLDCKDGSDEMH 104
++ CD DC +M DE C TL + +C SGE T ++ CN DC+D SDE
Sbjct: 230 GSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPI 289
Query: 105 C 105
Sbjct: 290 K 290
Score = 34.4 bits (78), Expect = 0.004
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 45 NRTQACDSVADCDNMKDEKHCHTGTLPVVLS---------LQCGSGETYTKEQHCNGVLD 95
+ ACD+ DC++ DE L V C SGE C+G D
Sbjct: 141 PQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPD 200
Query: 96 CKDGSDEMHC 105
CKD SDE +C
Sbjct: 201 CKDKSDEENC 210
Score = 30.5 bits (68), Expect = 0.087
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 77 QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
QC G+ + + C+G +C+DGSDE
Sbjct: 12 QCQDGKCISYKWVCDGSAECQDGSDESQE 40
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 42.9 bits (100), Expect = 4e-06
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 50 CDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
CD DCDN DE+ C T +C G+ +++ C+ DC DGSDE C
Sbjct: 86 CDGQVDCDNGSDEQGCPPKTCSQ-DEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 140
Score = 40.6 bits (94), Expect = 2e-05
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 46 RTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
R CDS DC + DE C T S QC S + C+ DC+DGSDE
Sbjct: 121 RQFVCDSDRDCLDGSDEASCPVLTCGPA-SFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 179
Score = 39.4 bits (91), Expect = 6e-05
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 45 NRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMH 104
+ + CD DC + DE++C T QC G + C+ DCKD SDE+
Sbjct: 208 HSSWRCDGGPDCKDKSDEENCAVATCRP-DEFQCSDGNCIHGSRQCDREYDCKDMSDEVG 266
Query: 105 C 105
C
Sbjct: 267 C 267
Score = 39.4 bits (91), Expect = 6e-05
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 45 NRTQACDSVADCDNMKDEKHCHTGTLPVVLS---------LQCGSGETYTKEQHCNGVLD 95
+ ACD+ DC++ DE L V C SGE C+G D
Sbjct: 159 PQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPD 218
Query: 96 CKDGSDEMHC 105
CKD SDE +C
Sbjct: 219 CKDKSDEENC 228
Score = 39.0 bits (90), Expect = 7e-05
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 45 NRTQACDSVADCDNMKDEKHCHTGTLPVVLSL-QCGSGETYTKEQHCNGVLDCKDGSDEM 103
+ ++ CD DC +M DE C TL + +C SGE T ++ CN DC+D SDE
Sbjct: 247 HGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEP 306
Query: 104 HC 105
Sbjct: 307 IK 308
Score = 31.0 bits (69), Expect = 0.063
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 77 QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
QC G+ + + C+G +C+DGSDE
Sbjct: 30 QCQDGKCISYKWVCDGSAECQDGSDESQE 58
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich
module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Length = 37
Score = 34.5 bits (80), Expect = 3e-04
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 77 QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
C SGE C+G DCKD SDE +C
Sbjct: 8 HCLSGECIHSSWRCDGGPDCKDKSDEENC 36
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 34.2 bits (79), Expect = 6e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 77 QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
QC + C+ DC D SDE C
Sbjct: 14 QCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 33.1 bits (76), Expect = 0.001
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 77 QCGSGET-YTKEQHCNGVLDCKDGSDEMHC 105
+C G + C+GV DC+D SDE C
Sbjct: 13 KCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding,
calcium binding, complement-like repeat, LRP receptor,
signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Length = 44
Score = 31.5 bits (72), Expect = 0.005
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 77 QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
+C SG + C+G DC D SDE H
Sbjct: 11 KCNSGRCIPEHWTCDGDNDCGDYSDETHA 39
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 31.1 bits (71), Expect = 0.007
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 77 QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
C + + C+G DC D SDE
Sbjct: 12 ACANSRCIQERWKCDGDNDCLDNSDEAPA 40
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 30.8 bits (70), Expect = 0.008
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 77 QCGSGET-YTKEQHCNGVLDCKDGSDEMHC 105
CG+ + HCNGV DC + +DE +C
Sbjct: 13 PCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 29.8 bits (67), Expect = 0.027
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 75 SLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
GE Y ++ C+G DC DG DE C
Sbjct: 16 EPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 23.6 bits (51), Expect = 4.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 50 CDSVADCDNMKDEKHC 65
CD DCD+ +DE C
Sbjct: 31 CDGHPDCDDGRDEWGC 46
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand
binding, calcium binding, LDLR, LRP, lipid binding
protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 29.5 bits (67), Expect = 0.028
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 86 KEQHCNGVLDCKDGSDEMHC 105
C+G DC D SDE C
Sbjct: 20 LRWRCDGDTDCMDSSDEKSC 39
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 29.2 bits (66), Expect = 0.035
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 77 QCGSGETY--TKEQHCNGVLDCKDGSDEMHC 105
CG+ T C+G DC G DE +C
Sbjct: 7 SCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 22.7 bits (49), Expect = 9.9
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 50 CDSVADCDNMKDEKHC 65
CD DCD+ +DE++C
Sbjct: 22 CDGENDCDSGEDEENC 37
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and
PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 29.0 bits (65), Expect = 0.045
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 75 SLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
GE Y ++ C+G DC DG DE C
Sbjct: 14 EPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 23.6 bits (51), Expect = 5.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 50 CDSVADCDNMKDEKHCHT 67
CD DCD+ +DE C T
Sbjct: 29 CDGHPDCDDGRDEWGCGT 46
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 28.1 bits (63), Expect = 0.12
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 86 KEQHCNGVLDCKDGSDEMHC 105
+ C+G DC DG+DE
Sbjct: 23 ERWLCDGDKDCADGADESIA 42
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 28.4 bits (62), Expect = 0.43
Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 48 QACD-SVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
C + D + C +G + CNG DC DGSDE C
Sbjct: 42 TICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDC 100
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module,
COMP repeat, calcium, cell membrane, coated PIT,
cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 27.1 bits (60), Expect = 0.53
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 79 GSGETYTKEQHCNGVLDCKDGSDEMHC 105
G+ + C+G DC DG+DE
Sbjct: 18 GTHVCVPERWLCDGDKDCADGADESIA 44
>1xe0_A Nucleophosmin; drosophila nucleoplasmin-like protein (DNLP),
nucleoplasmin (NP), histone binding, X-RAY
crystallography, chaperone; 1.70A {Xenopus laevis} SCOP:
b.121.3.1 PDB: 1xb9_A 2p1b_A
Length = 114
Score = 26.5 bits (58), Expect = 1.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 69 TLPVVLSLQCGSGETYTKEQHCNGVLD 95
T PV+L L+ GSG Y QH + D
Sbjct: 87 TPPVILRLKSGSGPVYVSGQHLVALED 113
>3t30_B Nucleoplasmin-2; beta-barrel jelly roll topology, histone
chaperone, H2A-H2B H3-H4 tetramer, oocytes and early
embryos, chaperone; 1.90A {Homo sapiens}
Length = 110
Score = 26.5 bits (58), Expect = 1.2
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 69 TLPVVLSLQCGSGETYTKEQHC 90
+ PV L+ GSG + Q
Sbjct: 87 SPPVTFQLRAGSGPVFLSGQER 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 1.5
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 13/46 (28%)
Query: 58 NMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEM 103
+ ++ + L V + + DCKD D
Sbjct: 10 ETGEHQYQYKDILSVFE-------DAFVDN------FDCKDVQDMP 42
>1k5j_A Nucleoplasmin core; beta-barrel, jellyroll, beta-bulge, pentamer,
chaperone; 2.30A {Xenopus laevis} SCOP: b.121.3.1 PDB:
2vtx_A 2vtx_J
Length = 124
Score = 25.8 bits (56), Expect = 2.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 69 TLPVVLSLQCGSGETYTKEQHC 90
T PV L+ GSG Y QH
Sbjct: 97 TPPVTFRLKAGSGPLYISGQHV 118
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 25.9 bits (57), Expect = 2.7
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 9 FNDSKSASTFATTGVEWCQSQGKVMCGIYPDV 40
F++ +T V W +P +
Sbjct: 399 FSEPVVQNTLRVVKVFWALDADLARRRHFPAI 430
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 26.0 bits (56), Expect = 3.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 86 KEQHCNGVLDCKDGSDEMHC 105
K C+G DC++G DE C
Sbjct: 72 KLFVCDGHNDCRNGEDEKDC 91
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 25.8 bits (57), Expect = 3.4
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 9 FNDSKSASTFATTGVEWCQSQGKVMCGIYPDV 40
++ + ST G W +P +
Sbjct: 391 MSEPVTQSTLRIVGAFWRLDASLAFRRHFPAI 422
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 25.2 bits (54), Expect = 4.9
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 44 DNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDE 102
D + + + +E HC + E C+G DC+DGSDE
Sbjct: 33 DVDKKTIRQLKARISNLEEHHCDEHES----ECRGDVPECIHDLLFCDGEKDCRDGSDE 87
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A
{Acinetobacter glutaminasificans} SCOP: c.88.1.1
Length = 331
Score = 24.9 bits (55), Expect = 5.2
Identities = 3/14 (21%), Positives = 5/14 (35%)
Query: 71 PVVLSLQCGSGETY 84
+V S + G
Sbjct: 271 QIVRSSRVAQGFVL 284
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison
hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB:
3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Length = 326
Score = 24.8 bits (55), Expect = 7.2
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 71 PVVLSLQCGSGETY 84
VV S + +G T
Sbjct: 266 AVVRSSRVPTGATT 279
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 24.5 bits (52), Expect = 9.3
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 63 KHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
K C +C SG ++ CNG DC D SDE C
Sbjct: 110 KLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDC 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.436
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,533,201
Number of extensions: 76066
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 83
Length of query: 105
Length of database: 6,701,793
Length adjustment: 70
Effective length of query: 35
Effective length of database: 4,747,323
Effective search space: 166156305
Effective search space used: 166156305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)