RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1294
(105 letters)
>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 34.7 bits (80), Expect = 1e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 77 QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
+C G+ +++ C+ DC DGSDE C
Sbjct: 9 RCHDGKCISRQFVCDSDRDCLDGSDEASC 37
>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 34.3 bits (79), Expect = 2e-04
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 77 QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
QC G + C+ DCKD SDE+ C
Sbjct: 9 QCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 37
Score = 33.9 bits (78), Expect = 2e-04
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 77 QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
C SGE C+G DCKD SDE +C
Sbjct: 8 HCLSGECIHSSWRCDGGPDCKDKSDEENC 36
>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 33.2 bits (76), Expect = 4e-04
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 77 QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
+C SG + C+G DC D SDE H
Sbjct: 11 KCNSGRCIPEHWTCDGDNDCGDYSDETHA 39
>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 32.8 bits (75), Expect = 6e-04
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 77 QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
C + + C+G DC D SDE
Sbjct: 12 ACANSRCIQERWKCDGDNDCLDNSDEAPA 40
>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 32.9 bits (75), Expect = 7e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 77 QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
QC G+ + + C+G +C+DGSDE
Sbjct: 14 QCQDGKCISYKWVCDGSAECQDGSDESQE 42
>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 31.7 bits (72), Expect = 0.002
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 77 QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
+C SGE T ++ CN DC+D SDE
Sbjct: 13 KCHSGECITLDKVCNMARDCRDWSDEPIK 41
>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 31.3 bits (71), Expect = 0.002
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 77 QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
QC S + C+ DC+DGSDE
Sbjct: 9 QCNSSTCIPQLWACDNDPDCEDGSDEWPQ 37
>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 42
Score = 29.4 bits (66), Expect = 0.012
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 78 CGSGETYTKEQHCNGVLDCKDGSDEMHC 105
G C+G DC D SDE C
Sbjct: 12 RLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail
(Coturnix coturnix) [TaxId: 9091]}
Length = 42
Score = 29.5 bits (66), Expect = 0.012
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 75 SLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
GE Y ++ C+G DC DG DE C
Sbjct: 11 EPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41
>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 29.0 bits (65), Expect = 0.016
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 79 GSGETYTKEQHCNGVLDCKDGSDEMHC 105
+ C+G +DC +GSDE C
Sbjct: 15 RVNRCIPQFWRCDGQVDCDNGSDEQGC 41
>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3
subunit {Common earthworm (Lumbricus terrestris) [TaxId:
6398]}
Length = 41
Score = 29.0 bits (65), Expect = 0.019
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 79 GSGETYTKEQHCNGVLDCKDGSDEMHC 105
+ +K C+G DC++G DE C
Sbjct: 13 DDPQCISKLFVCDGHNDCRNGEDEKDC 39
>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 28.3 bits (63), Expect = 0.033
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 77 QCGSGETY--TKEQHCNGVLDCKDGSDEMHC 105
CG+ T C+G DC G DE +C
Sbjct: 7 SCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2
subunit {Common earthworm (Lumbricus terrestris) [TaxId:
6398]}
Length = 41
Score = 26.4 bits (58), Expect = 0.19
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 79 GSGETYTKEQHCNGVLDCKDGSDEMHC 105
E + C+G DC + DE
Sbjct: 12 NEQECISDLLVCDGHKDCHNAHDEDPD 38
>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common
earthworm (Lumbricus terrestris) [TaxId: 6398]}
Length = 42
Score = 25.2 bits (55), Expect = 0.42
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 79 GSGETYTKEQHCNGVLDCKDGSDEMHC 105
E C+G DC+DGSDE
Sbjct: 13 DVPECIHDLLFCDGEKDCRDGSDEDPE 39
>d1xe0a_ b.121.3.1 (A:) Nucleophosmin (NO38) {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 108
Score = 25.5 bits (56), Expect = 0.87
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 69 TLPVVLSLQCGSGETYTKEQH 89
T PV+L L+ GSG Y QH
Sbjct: 85 TPPVILRLKSGSGPVYVSGQH 105
>d1k5ja_ b.121.3.1 (A:) Nucleoplasmin core {Xenopus laevis [TaxId:
8355]}
Length = 105
Score = 25.1 bits (55), Expect = 1.4
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 69 TLPVVLSLQCGSGETYTKEQH 89
T PV L+ GSG Y QH
Sbjct: 83 TPPVTFRLKAGSGPLYISGQH 103
>g1n13.1 d.155.1.2 (A:,B:) Arginine decarboxylase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 159
Score = 24.0 bits (52), Expect = 4.2
Identities = 4/31 (12%), Positives = 14/31 (45%)
Query: 19 ATTGVEWCQSQGKVMCGIYPDVQCYDNRTQA 49
+ + + K +CG+ + + ++ +A
Sbjct: 83 ISAAISVAIPKDKSLCGLIMEYEGKCSKKEA 113
>d1odza_ c.1.8.3 (A:) Mannanase A, ManA {Pseudomonas cellulosa
(Cellvibrio japonicus) [TaxId: 155077]}
Length = 381
Score = 24.3 bits (52), Expect = 4.4
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 21 TGVEWCQSQGKVMCGIYPDVQCYD 44
T + QS G + V +D
Sbjct: 47 TRTDGTQSDTFNAVGDFAAVYGWD 70
>d1agxa_ c.88.1.1 (A:) Glutaminase-asparaginase {Acinetobacter
glutaminasificans [TaxId: 474]}
Length = 331
Score = 23.6 bits (50), Expect = 7.4
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 62 EKHCHTGTLPVVLSLQCGSGETY 84
K L +V S + G
Sbjct: 262 RKLHDEQGLQIVRSSRVAQGFVL 284
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.436
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 397,898
Number of extensions: 16603
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 40
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)