BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12947
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZL0|A Chain A, Structure Of Protein Of Unknown Function Pa5198 From
Pseudomonas Aeruginosa
pdb|1ZL0|B Chain B, Structure Of Protein Of Unknown Function Pa5198 From
Pseudomonas Aeruginosa
Length = 311
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 17 SCQVELPQKEWWQTAIMYQIYPRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDP 76
C LP +W + + PR LI ++DI + F +G PA H P L + P
Sbjct: 92 GCGQLLPGLDWGR---LQAASPRPLI--GFSDISVLLSAFHRHGLPAIHGPVATGLGLSP 146
Query: 77 --------DRNSNATTISRLLHNWLDNLPAEDI 101
+R ++ ++SRLL LP + +
Sbjct: 147 LSAPREQQERLASLASVSRLLAGIDHELPVQHL 179
>pdb|2AUN|A Chain A, Active Site His285ala Mutant Of Ld-Carboxypeptidase
pdb|2AUN|B Chain B, Active Site His285ala Mutant Of Ld-Carboxypeptidase
Length = 317
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 17 SCQVELPQKEWWQTAIMYQIYPRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDP 76
C LP +W + + PR LI ++DI + F +G PA H P L + P
Sbjct: 100 GCGQLLPGLDWGR---LEAASPRPLI--GFSDISVLLSAFHRHGLPAIHGPVATGLGLSP 154
Query: 77 --------DRNSNATTISRLLHNWLDNLPAEDI 101
+R ++ ++SRLL LP + +
Sbjct: 155 LSAPREQQERLASLASVSRLLAGIDHELPVQHL 187
>pdb|1ZRS|A Chain A, Wild-Type Ld-Carboxypeptidase
pdb|1ZRS|B Chain B, Wild-Type Ld-Carboxypeptidase
Length = 317
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 17 SCQVELPQKEWWQTAIMYQIYPRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDP 76
C LP +W + + PR LI ++DI + F +G PA H P L + P
Sbjct: 100 GCGQLLPGLDWGR---LEAASPRPLI--GFSDISVLLSAFHRHGLPAIHGPVATGLGLSP 154
Query: 77 --------DRNSNATTISRLLHNWLDNLPAEDI 101
+R ++ ++SRLL LP + +
Sbjct: 155 LSAPREQQERLASLASVSRLLAGIDHELPVQHL 187
>pdb|2AUM|A Chain A, Active Site Ser115ala Mutant Of Ld-Carboxypeptidase
pdb|2AUM|B Chain B, Active Site Ser115ala Mutant Of Ld-Carboxypeptidase
Length = 317
Score = 33.5 bits (75), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 17 SCQVELPQKEWWQTAIMYQIYPRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDP 76
C LP +W + + PR LI + DI + F +G PA H P L + P
Sbjct: 100 GCGQLLPGLDWGR---LEAASPRPLI--GFADISVLLSAFHRHGLPAIHGPVATGLGLSP 154
Query: 77 --------DRNSNATTISRLLHNWLDNLPAEDI 101
+R ++ ++SRLL LP + +
Sbjct: 155 LSAPREQQERLASLASVSRLLAGIDHELPVQHL 187
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 1 MLSRICLA--VFGFLSLVSCQVE---LPQKEWWQTAIMYQIYPR 39
++ R+ A + F S+ S + E P WW++A+ YQ+YPR
Sbjct: 2 LMKRLFAASLMLAFSSVSSVRAEEAVKPGAPWWKSAVFYQVYPR 45
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 32.7 bits (73), Expect = 0.074, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 15/16 (93%)
Query: 24 QKEWWQTAIMYQIYPR 39
+K+WW+ +++YQIYPR
Sbjct: 2 EKQWWKESVVYQIYPR 17
>pdb|3IGF|A Chain A, Crystal Structure Of The All4481 Protein From Nostoc Sp.
Pcc 7120, Northeast Structural Genomics Consortium
Target Nsr300
pdb|3IGF|B Chain B, Crystal Structure Of The All4481 Protein From Nostoc Sp.
Pcc 7120, Northeast Structural Genomics Consortium
Target Nsr300
Length = 374
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 114 TEGTVTATFTKISSLVVPDIVCGGW 138
TEG ++A FT +S VVPD+ G W
Sbjct: 255 TEGDLSAEFTPLSVTVVPDVTKGDW 279
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 23 PQKEWWQTAIMYQIYPR 39
P WW++A+ YQ+YPR
Sbjct: 2 PGAPWWKSAVFYQVYPR 18
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 23 PQKEWWQTAIMYQIYPR 39
P WW++A+ YQ+YPR
Sbjct: 2 PGAPWWKSAVFYQVYPR 18
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex
With Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex
With Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 23 PQKEWWQTAIMYQIYPR 39
P WW++A+ YQ+YPR
Sbjct: 2 PGAPWWKSAVFYQVYPR 18
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 23 PQKEWWQTAIMYQIYPR 39
P WW++A+ YQ+YPR
Sbjct: 1 PGAPWWKSAVFYQVYPR 17
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex
With Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex
With Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex
With Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex
With Glucose
Length = 556
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 23 PQKEWWQTAIMYQIYPR 39
P WW++A+ YQ+YPR
Sbjct: 1 PGAPWWKSAVFYQVYPR 17
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex
With The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex
With The Substrate Sucrose
Length = 556
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 23 PQKEWWQTAIMYQIYPR 39
P WW++A+ YQ+YPR
Sbjct: 1 PGAPWWKSAVFYQVYPR 17
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 16 VSCQVELPQKEWWQTAIMYQIYPR 39
+ Q E WW+ A+ YQIYPR
Sbjct: 8 IHVQKESEYPAWWKEAVFYQIYPR 31
>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran
Glucosidase
Length = 543
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 24 QKEWWQTAIMYQIYPR 39
QK WW A +YQIYP+
Sbjct: 2 QKHWWHKATVYQIYPK 17
>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex
With Isomaltotriose
Length = 543
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 24 QKEWWQTAIMYQIYPR 39
QK WW A +YQIYP+
Sbjct: 2 QKHWWHKATVYQIYPK 17
>pdb|1IZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase 1 Mutant
Enzyme W398v
Length = 637
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 26 EWWQTAIMYQIYP-RILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDP 76
+W + +MYQI+P R +S D++ + YNG P + + DP
Sbjct: 128 DWLKNGVMYQIFPDRFYNGDSSNDVQ--TGSYTYNGTPTEKKAWGSSVYADP 177
>pdb|1IZJ|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1 Mutant
Enzyme F313a
Length = 637
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 26 EWWQTAIMYQIYP-RILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDP 76
+W + +MYQI+P R +S D++ + YNG P + + DP
Sbjct: 128 DWLKNGVMYQIFPDRFYNGDSSNDVQ--TGSYTYNGTPTEKKAWGSSVYADP 177
>pdb|1UH2|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseMALTO-Hexaose
Complex
pdb|1UH4|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1MALTO-
Tridecaose Complex
pdb|2D0G|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
P5, A Pullulan Model Oligosaccharide
pdb|2D0H|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
P2, A Pullulan Model Oligosaccharide
Length = 637
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 26 EWWQTAIMYQIYP-RILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDP 76
+W + +MYQI+P R +S D++ + YNG P + + DP
Sbjct: 128 DWLKNGVMYQIFPDRFYNGDSSNDVQ--TGSYTYNGTPTEKKAWGSSVYADP 177
>pdb|1JI1|A Chain A, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1JI1|B Chain B, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1UH3|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseACARBOSE
Complex
Length = 637
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 26 EWWQTAIMYQIYP-RILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDP 76
+W + +MYQI+P R +S D++ + YNG P + + DP
Sbjct: 128 DWLKNGVMYQIFPDRFYNGDSSNDVQ--TGSYTYNGTPTEKKAWGSSVYADP 177
>pdb|2D0F|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356n Complexed With P2,
A Pullulan Model Oligosaccharide
Length = 637
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 26 EWWQTAIMYQIYP-RILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDP 76
+W + +MYQI+P R +S D++ + YNG P + + DP
Sbjct: 128 DWLKNGVMYQIFPDRFYNGDSSNDVQ--TGSYTYNGTPTEKKAWGSSVYADP 177
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 96 LPAEDIERGLIVSKSKGLTEGTVTATFTKISSLVVP 131
LPA+D++R ++K+ G+ T T SL VP
Sbjct: 432 LPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVP 467
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 96 LPAEDIERGLIVSKSKGLTEGTVTATFTKISSLVVP 131
LPA+D++R ++K+ G+ T T SL VP
Sbjct: 432 LPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVP 467
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 24 QKEWWQTAIMYQIYPRILI 42
+K WW+ + YQIYPR +
Sbjct: 2 KKTWWKEGVAYQIYPRSFM 20
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 26 EWWQTAIMYQIYPR 39
+WW+ A+ YQ+YPR
Sbjct: 4 KWWKEAVFYQVYPR 17
>pdb|1FLP|A Chain A, Structure Of The Sulfide-Reactive Hemoglobin From The Clam
Lucina Pectinata: Crystallographic Analysis At 1.5
Angstroms Resolution
pdb|1MOH|A Chain A, Ferric Monomeric Hemoglobin I (Hb I)
Length = 142
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 76 PDRNSNATTISRLLHNWLDNLPAEDIERGLIVS-----KSKGLTEGTVTATFTKISSLV 129
P+ + A + L+ NW+DNL G + K++G++ G + A F +S +
Sbjct: 59 PEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLEAAFKVLSGFM 117
>pdb|1EBT|A Chain A, Hemoglobin I From The Clam Lucina Pectinata Bound With
Cyanide
Length = 142
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 76 PDRNSNATTISRLLHNWLDNLPAEDIERGLIVS-----KSKGLTEGTVTATFTKISSLV 129
P+ + A + L+ NW+DNL G + K++G++ G + A F +S +
Sbjct: 59 PEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLEAAFKVLSGFM 117
>pdb|1B0B|A Chain A, Hemoglobin I From The Clam Lucina Pectinata, Cyanide
Complex At 100 Kelvin
Length = 142
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 76 PDRNSNATTISRLLHNWLDNLPAEDIERGLIVS-----KSKGLTEGTVTATFTKISSLV 129
P+ + A + L+ NW+DNL G + K++G++ G + A F ++ +
Sbjct: 59 PEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLEAAFKVLAGFM 117
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 27 WWQTAIMYQIYPR 39
WW+ A++YQ+YP+
Sbjct: 6 WWKNAVVYQVYPK 18
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 27 WWQTAIMYQIYP-RILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVID 75
W + AI YQI+P R ++ D E T+ + + P+ + + Q VID
Sbjct: 127 WVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVID 176
>pdb|3N54|B Chain B, Crystal Structure Of The Gerbc Protein
Length = 350
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 59 NGRPAAHYPFNFQLVIDPDRNSNATTISRLLHNWLDNLPAEDIERGL 105
NG+P H + ++ D+N N + S+ + L+N+ + +ER +
Sbjct: 242 NGKPVFHISVKTKGILTEDQNPNENSFSKSYLHRLENIFEKKLERDV 288
>pdb|2ELF|A Chain A, Crystal Structure Of The Selb-Like Elongation Factor
Ef-Pyl From Methanosarcina Mazei
Length = 370
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 93 LDNLPAEDIERGLIVSKSKGL-TEGTVTATFTKISSLVVP 131
L N+ A+DIERG I+S + + T+ T+ T +K + + P
Sbjct: 259 LKNVQAKDIERGFIISDKEIVTTDYTLECTVSKFTKKIEP 298
>pdb|2DH2|A Chain A, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 21 ELPQKEWWQTAIMYQI 36
ELP ++WW T +Y+I
Sbjct: 6 ELPAQKWWHTGALYRI 21
>pdb|2DH3|A Chain A, Crystal Structure Of Human Ed-4f2hc
pdb|2DH3|B Chain B, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 21 ELPQKEWWQTAIMYQI 36
ELP ++WW T +Y+I
Sbjct: 6 ELPAQKWWHTGALYRI 21
>pdb|3TP4|A Chain A, Crystal Structure Of Engineered Protein At The Resolution
1.98a, Northeast Structural Genomics Consortium Target
Or128
pdb|3TP4|B Chain B, Crystal Structure Of Engineered Protein At The Resolution
1.98a, Northeast Structural Genomics Consortium Target
Or128
Length = 475
Score = 26.6 bits (57), Expect = 6.5, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 79 NSNATTISRLLHNWLDNLPAEDIERGLIVSKSKGLTEGTVTATFTKISSLVVPDIVCGGW 138
+++AT +R L ++LD + E I G + S GLT G T + + ++ GW
Sbjct: 10 DADATAETRSLLSYLDGVRGEGILFGHHGTTSSGLTTGPTDGTTSDVKNVTGDFPAVFGW 69
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 13 LSLVSCQVELPQKEWWQTAIMYQIYP 38
+++ S E K WW+ A YQIYP
Sbjct: 1 MTISSAHPETEPK-WWKEATFYQIYP 25
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With
Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 13 LSLVSCQVELPQKEWWQTAIMYQIYP 38
+++ S E K WW+ A YQIYP
Sbjct: 1 MTISSAHPETEPK-WWKEATFYQIYP 25
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,687,871
Number of Sequences: 62578
Number of extensions: 179584
Number of successful extensions: 445
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 41
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)