Query psy12947
Match_columns 154
No_of_seqs 106 out of 918
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 23:46:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10933 trehalose-6-phosphate 99.9 3.8E-23 8.2E-28 185.5 9.4 108 38-146 245-370 (551)
2 TIGR02403 trehalose_treC alpha 99.9 2.1E-22 4.5E-27 180.4 10.4 120 24-146 226-364 (543)
3 TIGR02456 treS_nterm trehalose 99.7 9.3E-18 2E-22 150.1 11.4 124 23-148 219-381 (539)
4 KOG0471|consensus 99.7 8.3E-17 1.8E-21 144.6 6.7 124 23-147 262-395 (545)
5 PRK09505 malS alpha-amylase; R 99.6 4.6E-16 9.9E-21 142.9 5.7 101 38-146 498-606 (683)
6 PF00128 Alpha-amylase: Alpha 99.6 9.7E-16 2.1E-20 123.6 6.6 123 23-147 177-313 (316)
7 PRK10785 maltodextrin glucosid 99.5 3.9E-14 8.4E-19 128.5 9.1 117 23-146 352-488 (598)
8 PRK09441 cytoplasmic alpha-amy 99.3 9E-13 2E-17 116.5 5.2 120 24-145 243-372 (479)
9 COG0366 AmyA Glycosidases [Car 99.1 1.3E-10 2.9E-15 100.7 6.6 111 37-148 238-362 (505)
10 TIGR03852 sucrose_gtfA sucrose 99.1 9.3E-11 2E-15 104.1 3.8 122 15-150 199-380 (470)
11 TIGR02402 trehalose_TreZ malto 98.9 1.4E-09 3.1E-14 98.0 4.0 46 103-148 368-423 (542)
12 PLN00196 alpha-amylase; Provis 98.7 2.1E-08 4.6E-13 88.2 6.7 37 104-140 308-349 (428)
13 PLN02361 alpha-amylase 98.7 5.7E-08 1.2E-12 84.9 6.8 37 104-140 282-323 (401)
14 TIGR02104 pulA_typeI pullulana 98.6 2.2E-08 4.8E-13 91.2 4.3 43 104-146 432-488 (605)
15 TIGR02455 TreS_stutzeri trehal 98.5 4.4E-07 9.4E-12 83.3 8.2 83 24-111 317-404 (688)
16 TIGR01515 branching_enzym alph 98.4 1.5E-07 3.4E-12 85.9 2.5 118 23-146 328-466 (613)
17 PRK13840 sucrose phosphorylase 98.4 7.5E-07 1.6E-11 79.8 6.1 115 23-150 215-390 (495)
18 PRK12313 glycogen branching en 98.2 1.2E-06 2.6E-11 80.3 4.7 42 105-146 424-479 (633)
19 PRK05402 glycogen branching en 98.1 2.5E-06 5.4E-11 79.4 4.6 43 105-147 520-576 (726)
20 PRK14510 putative bifunctional 98.1 2.6E-06 5.7E-11 83.3 4.3 117 23-143 354-527 (1221)
21 PRK14706 glycogen branching en 97.9 1.3E-05 2.9E-10 73.9 5.0 116 23-144 337-472 (639)
22 TIGR02401 trehalose_TreY malto 97.8 1E-05 2.3E-10 76.3 1.9 42 105-146 619-673 (825)
23 PLN02784 alpha-amylase 97.5 0.00027 5.8E-09 67.1 6.8 37 104-140 775-816 (894)
24 PRK14511 maltooligosyl trehalo 96.7 0.00077 1.7E-08 64.3 1.6 22 124-145 707-728 (879)
25 TIGR02100 glgX_debranch glycog 96.4 0.0019 4.1E-08 60.3 2.5 24 122-145 504-527 (688)
26 PRK12568 glycogen branching en 96.1 0.019 4.1E-07 54.1 7.3 120 23-148 441-581 (730)
27 PRK03705 glycogen debranching 95.3 0.0073 1.6E-07 56.2 1.2 24 122-145 498-521 (658)
28 PRK14705 glycogen branching en 94.3 0.11 2.3E-06 51.7 6.5 26 121-146 1050-1075(1224)
29 TIGR02102 pullulan_Gpos pullul 93.9 0.028 6.1E-07 55.1 1.6 45 103-147 752-815 (1111)
30 PLN02960 alpha-amylase 93.1 0.37 8E-06 46.5 7.5 14 131-144 727-740 (897)
31 COG0296 GlgB 1,4-alpha-glucan 81.8 1.1 2.4E-05 41.8 2.6 27 121-147 449-475 (628)
32 PLN02447 1,4-alpha-glucan-bran 74.6 8.1 0.00018 37.0 6.0 24 121-144 554-578 (758)
33 COG3280 TreY Maltooligosyl tre 63.3 4.2 9.1E-05 39.0 1.6 60 83-142 639-730 (889)
34 COG0420 SbcD DNA repair exonuc 45.1 24 0.00053 30.2 3.3 38 81-119 57-95 (390)
35 KOG2212|consensus 43.4 15 0.00032 32.6 1.7 34 102-135 308-353 (504)
36 PRK14507 putative bifunctional 42.2 13 0.00028 38.7 1.3 19 124-142 1500-1518(1693)
37 cd08165 MPP_MPPE1 human MPPE1 40.3 36 0.00078 25.5 3.2 32 82-113 57-90 (156)
38 KOG1432|consensus 38.2 17 0.00036 32.0 1.2 62 82-143 113-183 (379)
39 PRK11627 hypothetical protein; 36.6 28 0.00061 27.7 2.2 21 1-21 1-21 (192)
40 PF08139 LPAM_1: Prokaryotic m 31.6 42 0.00092 18.2 1.7 19 1-19 6-24 (25)
41 PF13258 DUF4049: Domain of un 28.6 37 0.00081 28.6 1.7 33 100-132 85-117 (318)
42 PF02470 MCE: mce related prot 27.7 25 0.00055 23.2 0.5 22 130-151 16-37 (81)
43 cd07379 MPP_239FB Homo sapiens 27.4 54 0.0012 23.4 2.3 31 82-114 35-65 (135)
44 PF10632 He_PIG_assoc: He_PIG 26.2 35 0.00076 19.2 0.8 9 130-138 12-20 (29)
45 TIGR00619 sbcd exonuclease Sbc 25.8 54 0.0012 26.6 2.2 25 89-113 63-89 (253)
46 cd07384 MPP_Cdc1_like Saccharo 25.8 80 0.0017 24.1 3.0 32 83-114 65-102 (171)
47 cd08163 MPP_Cdc1 Saccharomyces 24.9 86 0.0019 25.7 3.3 33 80-112 62-97 (257)
48 PF00149 Metallophos: Calcineu 23.5 37 0.00081 23.0 0.7 17 101-117 67-83 (200)
49 KOG3662|consensus 21.8 1.2E+02 0.0026 27.1 3.7 35 78-112 108-144 (410)
50 PF03711 OKR_DC_1_C: Orn/Lys/A 21.2 42 0.00091 25.2 0.7 22 126-147 82-103 (136)
51 cd07398 MPP_YbbF-LpxH Escheric 20.4 68 0.0015 24.5 1.7 23 90-112 60-82 (217)
52 cd07392 MPP_PAE1087 Pyrobaculu 20.1 47 0.001 24.5 0.7 21 91-113 46-66 (188)
No 1
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=99.89 E-value=3.8e-23 Score=185.51 Aligned_cols=108 Identities=10% Similarity=0.069 Sum_probs=89.1
Q ss_pred CceEEEEeec-CHHHHHHhhhcCCCCCccccccccCCcCC---C-----CCCCHHHHHHHHHHHHHhCCCCCCcceeccC
Q psy12947 38 PRILIVESYT-DIENTMKYFKYNGRPAAHYPFNFQLVIDP---D-----RNSNATTISRLLHNWLDNLPAEDIERGLIVS 108 (154)
Q Consensus 38 ~r~lVGE~~~-~~~~~~~yyg~~~~~el~~~FNF~ll~~~---~-----~~~~~~~~~~~i~~w~~~l~~~~wp~wvlgN 108 (154)
+.++|||++. +.+.+..|... ..++++++|||..+... . ..++...+++++..|+..++..+|++|+++|
T Consensus 245 ~~~~vgE~~~~~~~~~~~y~~~-~~~~~~~~fnf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~N 323 (551)
T PRK10933 245 GLMTVGEMSSTSLEHCQRYAAL-TGSELSMTFNFHHLKVDYPNGEKWTLAKPDFVALKTLFRHWQQGMHNVAWNALFWCN 323 (551)
T ss_pred CcEEEEeecCCCHHHHHHhhcc-cCCeeeeEecHHHhhhhhccCCcccccccCHHHHHHHHHHHHHhhcccCeeccccCC
Confidence 6789999987 56677777653 34689999999864310 0 1235678999999999998888899999999
Q ss_pred CCccccccchh---------HHHHHHHHhhCCCceeeecccccccCC
Q psy12947 109 KSKGLTEGTVT---------ATFTKISSLVVPDIVCGGWWFESGPQT 146 (154)
Q Consensus 109 HD~pR~vSR~g---------~~~l~~LlLtLpGt~~~y~geElG~~~ 146 (154)
||++|++||+| +++++++++||||+||+|||||+||..
T Consensus 324 HD~~R~~sr~g~~~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~ 370 (551)
T PRK10933 324 HDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTN 370 (551)
T ss_pred CCcccHHHHcCCchhHHHHHHHHHHHHHHhCCCceEEEeecccCCCC
Confidence 99999999997 346788999999999999999999987
No 2
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=99.88 E-value=2.1e-22 Score=180.36 Aligned_cols=120 Identities=10% Similarity=0.055 Sum_probs=95.7
Q ss_pred hHHHHHHHHhhcCCCceEEEEeec-CHHHHHHhhhcCCCCCccccccccCCcCC---C-----CCCCHHHHHHHHHHHHH
Q psy12947 24 QKEWWQTAIMYQIYPRILIVESYT-DIENTMKYFKYNGRPAAHYPFNFQLVIDP---D-----RNSNATTISRLLHNWLD 94 (154)
Q Consensus 24 ~re~R~vld~Y~g~~r~lVGE~~~-~~~~~~~yyg~~~~~el~~~FNF~ll~~~---~-----~~~~~~~~~~~i~~w~~ 94 (154)
.+++|+.+... ++.++|||++. +.+.+.+|.+ ...+++++.|||.++..- . ...++..++..+..|+.
T Consensus 226 ~~~~~~~~~~~--~~~~lvgE~~~~~~~~~~~y~~-~~~~~~d~~~nf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 302 (543)
T TIGR02403 226 LQEMNQEVFGD--NDSVTVGEMSSTTIENCIRYSN-PENKELSMVFTFHHLKVDYPNGEKWTLAKFDFAKLKEIFSTWQT 302 (543)
T ss_pred HHHHHHHhhcc--CCeEEEEEeCCCCHHHHHhhhC-CCCCeeCeEEChhhhhchhccccccccCCCCHHHHHHHHHHHHH
Confidence 56666666553 37999999987 5666777765 335789999999865310 0 12467889999999998
Q ss_pred hCC-CCCCcceeccCCCccccccchhH---------HHHHHHHhhCCCceeeecccccccCC
Q psy12947 95 NLP-AEDIERGLIVSKSKGLTEGTVTA---------TFTKISSLVVPDIVCGGWWFESGPQT 146 (154)
Q Consensus 95 ~l~-~~~wp~wvlgNHD~pR~vSR~g~---------~~l~~LlLtLpGt~~~y~geElG~~~ 146 (154)
.++ ...|..++++|||++|++||+|+ ++++++++||||+||+|||||+||..
T Consensus 303 ~~~~~~~~~~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~ 364 (543)
T TIGR02403 303 GMQAGGGWNALFWNNHDQPRAVSRFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTN 364 (543)
T ss_pred hccccCcceeeecCCCChhhHHHhcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCC
Confidence 887 56788999999999999999973 46788999999999999999999986
No 3
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=99.74 E-value=9.3e-18 Score=150.13 Aligned_cols=124 Identities=16% Similarity=0.103 Sum_probs=90.7
Q ss_pred hhHHHHHHHHhhcCCCceEEEEeecCHHHHHHhhhcCCCCCccccccccCCcCCCC---CCCHHHHHHHHHHHHHhCCCC
Q psy12947 23 PQKEWWQTAIMYQIYPRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDPDR---NSNATTISRLLHNWLDNLPAE 99 (154)
Q Consensus 23 ~~re~R~vld~Y~g~~r~lVGE~~~~~~~~~~yyg~~~~~el~~~FNF~ll~~~~~---~~~~~~~~~~i~~w~~~l~~~ 99 (154)
-.++||+.+.+.. ++.+++||++...+.+..|++...+.++|+.|||.+...+.. ..++..+++.++.+. ..+..
T Consensus 219 f~~~~~~~v~~~~-p~~~~iaE~~~~~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~~-~~~~~ 296 (539)
T TIGR02456 219 FLKRLRKMVDREY-PGRMLLAEANQWPEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKETP-DIPDS 296 (539)
T ss_pred HHHHHHHHHHHhC-CCeEEEEEeCCCHHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHhh-hccCC
Confidence 4678888886543 388999999777778889997533348999999998632111 135666777766544 34445
Q ss_pred CCcceeccCCCcc-------------------------------ccccchh-----HHHHHHHHhhCCCceeeecccccc
Q psy12947 100 DIERGLIVSKSKG-------------------------------LTEGTVT-----ATFTKISSLVVPDIVCGGWWFESG 143 (154)
Q Consensus 100 ~wp~wvlgNHD~p-------------------------------R~vSR~g-----~~~l~~LlLtLpGt~~~y~geElG 143 (154)
...+++++|||.+ |.+|+.+ .++++++++|+||+|++|||||+|
T Consensus 297 ~~~~~fl~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiG 376 (539)
T TIGR02456 297 CQWCIFLRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIG 376 (539)
T ss_pred CceeeecCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhc
Confidence 5567899999984 5556653 356889999999999999999999
Q ss_pred cCCCc
Q psy12947 144 PQTKF 148 (154)
Q Consensus 144 ~~~~~ 148 (154)
|.++.
T Consensus 377 m~~~~ 381 (539)
T TIGR02456 377 MGDNI 381 (539)
T ss_pred CcCCC
Confidence 98643
No 4
>KOG0471|consensus
Probab=99.67 E-value=8.3e-17 Score=144.62 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=104.4
Q ss_pred hhHHHHHHHHhhc-----CCCceEEEEeecCHHHHHHhhhcCC-CCCccccccccCCcCCCCCCCHHHHHHHHHHHHHhC
Q psy12947 23 PQKEWWQTAIMYQ-----IYPRILIVESYTDIENTMKYFKYNG-RPAAHYPFNFQLVIDPDRNSNATTISRLLHNWLDNL 96 (154)
Q Consensus 23 ~~re~R~vld~Y~-----g~~r~lVGE~~~~~~~~~~yyg~~~-~~el~~~FNF~ll~~~~~~~~~~~~~~~i~~w~~~l 96 (154)
-.+.+|..++.+. +..|++..|++...+.++.|+++.+ .+..+.|++|+.+...... .+..++..+..|+..+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~-~~~~~~~~~~~~~~~~ 340 (545)
T KOG0471|consen 262 LIRAERFLLDDYSAAFGFGDKRILQTEAYSSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLT-VASIYKEVEVDWLSNH 340 (545)
T ss_pred HHHHHHhhhhhhhhcccccchhhhhhhhhccHHHHHhhhccCCCCccccccchhhhhhhhhcc-chHHHHHHHHHHHhcC
Confidence 5667788887775 4567888888888888999999765 4457899999998744322 6788999999999999
Q ss_pred C-CCCCcceeccCCCccccccchhH---HHHHHHHhhCCCceeeecccccccCCC
Q psy12947 97 P-AEDIERGLIVSKSKGLTEGTVTA---TFTKISSLVVPDIVCGGWWFESGPQTK 147 (154)
Q Consensus 97 ~-~~~wp~wvlgNHD~pR~vSR~g~---~~l~~LlLtLpGt~~~y~geElG~~~~ 147 (154)
+ ++.|++|+++|||++|.+||+|. +++++++++||||+++|||+|+||.+-
T Consensus 341 ~~~~~~a~W~~~~~~~~r~~sr~~~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~ 395 (545)
T KOG0471|consen 341 DTENRWAHWVLGNHDQARLASRFGSDSVDLLNVLLLTLPGTPVTYYGEEIGMDDV 395 (545)
T ss_pred CccCCceeeeecCccchhhHHHhcchhHHHHhHHhcccCCCceEEEeEEeeccce
Confidence 9 57899999999999999999984 568999999999999999999999864
No 5
>PRK09505 malS alpha-amylase; Reviewed
Probab=99.61 E-value=4.6e-16 Score=142.94 Aligned_cols=101 Identities=14% Similarity=0.086 Sum_probs=69.0
Q ss_pred CceEEEEeecCHHHHHHhhhcCCCCCccccccccCCcCCCCCCCH-HHHHHHHHHHHHhCCC--CCCcce-eccCCCccc
Q psy12947 38 PRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDPDRNSNA-TTISRLLHNWLDNLPA--EDIERG-LIVSKSKGL 113 (154)
Q Consensus 38 ~r~lVGE~~~~~~~~~~yyg~~~~~el~~~FNF~ll~~~~~~~~~-~~~~~~i~~w~~~l~~--~~wp~w-vlgNHD~pR 113 (154)
+.++|||+++.......||+ ++++..|||.+... ..++ ..+..+...+.. +.. ..+..+ +++|||++|
T Consensus 498 ~~~~vGEvw~~~~~~~~y~~----~~fDsv~NF~~~~~---~~~~~~~~~~l~~~~~~-~~~~~~~~~~l~FLdNHDt~R 569 (683)
T PRK09505 498 PFWMTGEAWGHGVMKSDYYR----HGFDAMINFDYQEQ---AAKAVDCLAQMDPTYQQ-MAEKLQDFNVLSYLSSHDTRL 569 (683)
T ss_pred CeEEEEEecCCchhhHHHHh----hcCccccCchHHHH---HHHHHHHHHHHHHHHHH-HhhhcCccceeecccCCChhh
Confidence 57899999974433456765 47999999987531 0111 222222222222 221 234444 889999999
Q ss_pred cccchhH----HHHHHHHhhCCCceeeecccccccCC
Q psy12947 114 TEGTVTA----TFTKISSLVVPDIVCGGWWFESGPQT 146 (154)
Q Consensus 114 ~vSR~g~----~~l~~LlLtLpGt~~~y~geElG~~~ 146 (154)
..|+.+. ++++++++++||+|++|||+|+||.-
T Consensus 570 f~s~~~~~~~~klAaall~tlpGiP~IYYGdEiGm~g 606 (683)
T PRK09505 570 FFEGGQSYAKQRRAAELLLLAPGAVQIYYGDESARPF 606 (683)
T ss_pred hhhhcCchHHHHHHHHHHHhCCCCcEEEechhhCccC
Confidence 9999853 46788999999999999999999964
No 6
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=99.61 E-value=9.7e-16 Score=123.58 Aligned_cols=123 Identities=15% Similarity=0.082 Sum_probs=87.4
Q ss_pred hhHHHHHHHHhhcCCCceEEEEeecC-HHHHHHhhhcCCCCCccccccccCCcC--------CCCCCCHHHHHHHHHHHH
Q psy12947 23 PQKEWWQTAIMYQIYPRILIVESYTD-IENTMKYFKYNGRPAAHYPFNFQLVID--------PDRNSNATTISRLLHNWL 93 (154)
Q Consensus 23 ~~re~R~vld~Y~g~~r~lVGE~~~~-~~~~~~yyg~~~~~el~~~FNF~ll~~--------~~~~~~~~~~~~~i~~w~ 93 (154)
..++|++-+.++. ++.++|||++.. .+.+..+... ........++|..... ...+.+...+++.+..+.
T Consensus 177 ~~~~~~~~~~~~~-~~~~~i~E~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (316)
T PF00128_consen 177 FWKEFRDEVKEEK-PDFFLIGEVWGGDNEDLRQYAYD-GYFDLDSVFDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQ 254 (316)
T ss_dssp HHHHHHHHHHHHH-TTSEEEEEESSSSHHHHHHHHHH-GTTSHSEEEHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHH
T ss_pred hHHHHhhhhhhhc-cccceeeeeccCCccccchhhhc-cccccchhhcccccccccchhhhhccccchhhhhhhhhhhhh
Confidence 5567776665543 378999999984 4433333221 1123333444433110 012345788899999999
Q ss_pred HhCCCCCCcceeccCCCccccccchhH-----HHHHHHHhhCCCceeeecccccccCCC
Q psy12947 94 DNLPAEDIERGLIVSKSKGLTEGTVTA-----TFTKISSLVVPDIVCGGWWFESGPQTK 147 (154)
Q Consensus 94 ~~l~~~~wp~wvlgNHD~pR~vSR~g~-----~~l~~LlLtLpGt~~~y~geElG~~~~ 147 (154)
...+...+..++++|||++|..++++. +++.++++++||+|++|||+|+|+...
T Consensus 255 ~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~ll~~pG~P~iy~G~E~g~~~~ 313 (316)
T PF00128_consen 255 SSYPDPYRAVNFLENHDTPRFASRFGNNRDRLKLALAFLLTSPGIPMIYYGDEIGMTGS 313 (316)
T ss_dssp HHSTTGGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHHHHSSSEEEEETTGGGTBBTS
T ss_pred hhhcccceeeecccccccccchhhhcccchHHHHHHHHHHcCCCccEEEeChhccCCCC
Confidence 988877899999999999999999853 467899999999999999999999764
No 7
>PRK10785 maltodextrin glucosidase; Provisional
Probab=99.52 E-value=3.9e-14 Score=128.47 Aligned_cols=117 Identities=14% Similarity=0.164 Sum_probs=78.8
Q ss_pred hhHHHHHHHHhhcCCCceEEEEeecCHHHHHHhhhcCCCCCcccccccc-----C---CcCC-----CCCCCHHHHHHHH
Q psy12947 23 PQKEWWQTAIMYQIYPRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQ-----L---VIDP-----DRNSNATTISRLL 89 (154)
Q Consensus 23 ~~re~R~vld~Y~g~~r~lVGE~~~~~~~~~~yyg~~~~~el~~~FNF~-----l---l~~~-----~~~~~~~~~~~~i 89 (154)
-.+++|+.+.+-. ++.++|||++.+.. .|... +.++..+|+. + +... ....++.++...+
T Consensus 352 f~~~~~~~vk~~~-pd~~ligE~~~~~~---~~l~~---~~~d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 424 (598)
T PRK10785 352 HVAGITQAAKEEN-PEAYVLGEHFGDAR---QWLQA---DVEDAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWM 424 (598)
T ss_pred HHHHHHHHHHhhC-CCeEEEEeccCChh---hhccC---ccccccccchhhhhHHHHHhhccccccCccCCCHHHHHHHH
Confidence 3567777665433 38899999987542 23322 2344444431 1 1000 0124678888888
Q ss_pred HHHHHhCCCCCCcc--eeccCCCccccccchh-----HHHHHHHHhhCCCceeeecccccccCC
Q psy12947 90 HNWLDNLPAEDIER--GLIVSKSKGLTEGTVT-----ATFTKISSLVVPDIVCGGWWFESGPQT 146 (154)
Q Consensus 90 ~~w~~~l~~~~wp~--wvlgNHD~pR~vSR~g-----~~~l~~LlLtLpGt~~~y~geElG~~~ 146 (154)
..+...++...+.. .+++|||.+|..++++ .++++++++|+||+||+|||+|+||+.
T Consensus 425 ~~~~~~~~~~~~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP~IYYGdE~G~~g 488 (598)
T PRK10785 425 DEYRAGLPHQQQLRQFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVPCIYYGDEVGLDG 488 (598)
T ss_pred HHHHHhCCHHHHHHhhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCcEEEeeeeccccC
Confidence 88887777543322 4699999999999974 246789999999999999999999965
No 8
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=99.34 E-value=9e-13 Score=116.46 Aligned_cols=120 Identities=9% Similarity=0.091 Sum_probs=71.2
Q ss_pred hHHHHHHHHhhcCCCceEEEEeec-CHHHHHHhhhcCC--CCCccccccccCCcCCCCCCCHHHHHHHHHHHHHhCCCCC
Q psy12947 24 QKEWWQTAIMYQIYPRILIVESYT-DIENTMKYFKYNG--RPAAHYPFNFQLVIDPDRNSNATTISRLLHNWLDNLPAED 100 (154)
Q Consensus 24 ~re~R~vld~Y~g~~r~lVGE~~~-~~~~~~~yyg~~~--~~el~~~FNF~ll~~~~~~~~~~~~~~~i~~w~~~l~~~~ 100 (154)
.++|++-+.+..+++.+++||++. +.+.+..|.+..+ ...+++++++.+...... -+...+.+.+..+..... ..
T Consensus 243 ~~~~~~~~~~~~~~~~~~vGE~~~~~~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~-~~~~~l~~~~~~~~~~~~-~~ 320 (479)
T PRK09441 243 IKEWIEHVREVAGKDLFIVGEYWSHDVDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQ-GRDYDMRNIFDGTLVEAD-PF 320 (479)
T ss_pred HHHHHHHHHHhcCCCeEEEEeecCCChHHHHHHHHhcCCCceEecHHHHHHHHHHHhc-CCccchHhhhCcchhhcC-cc
Confidence 445554444333346899999987 4555666665321 124555555544221110 112233444332221111 11
Q ss_pred CcceeccCCCccccccchh------HHHHHHHHhhCC-CceeeecccccccC
Q psy12947 101 IERGLIVSKSKGLTEGTVT------ATFTKISSLVVP-DIVCGGWWFESGPQ 145 (154)
Q Consensus 101 wp~wvlgNHD~pR~vSR~g------~~~l~~LlLtLp-Gt~~~y~geElG~~ 145 (154)
...-++.|||++|..++.+ .+++.+++||+| |+||+|||+|+|+.
T Consensus 321 ~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~ 372 (479)
T PRK09441 321 HAVTFVDNHDTQPGQALESPVEPWFKPLAYALILLREEGYPCVFYGDYYGAS 372 (479)
T ss_pred cceeeeccccCCCcccccccccccchHHHHHHHHhCCCCceeeEeccccCCC
Confidence 2345899999999988653 246779999999 99999999999986
No 9
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=99.11 E-value=1.3e-10 Score=100.72 Aligned_cols=111 Identities=12% Similarity=0.008 Sum_probs=84.5
Q ss_pred CCceEEEEeec-CHHHHHHhhhcCCCCCccccccccCCcCCC---CCCCHHHHHHHHHHHHHhCC-CCCCcceeccCCCc
Q psy12947 37 YPRILIVESYT-DIENTMKYFKYNGRPAAHYPFNFQLVIDPD---RNSNATTISRLLHNWLDNLP-AEDIERGLIVSKSK 111 (154)
Q Consensus 37 ~~r~lVGE~~~-~~~~~~~yyg~~~~~el~~~FNF~ll~~~~---~~~~~~~~~~~i~~w~~~l~-~~~wp~wvlgNHD~ 111 (154)
...+.+++... ..+....+ ....+.++++.|+|.++.... .+..+..++.....|..... ..+|.+++++|||.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hD~ 316 (505)
T COG0366 238 EAITDVGEAPGAVKEDFADN-TSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLAVNLNDGWNNLFLSNHDQ 316 (505)
T ss_pred cceeeeeccccccchhhhhc-cchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHhhhccccCchhhhhhhcCc
Confidence 35567777766 34444444 233457899999999876310 12578999999999998886 47799999999999
Q ss_pred cccccchh---------HHHHHHHHhhCCCceeeecccccccCCCc
Q psy12947 112 GLTEGTVT---------ATFTKISSLVVPDIVCGGWWFESGPQTKF 148 (154)
Q Consensus 112 pR~vSR~g---------~~~l~~LlLtLpGt~~~y~geElG~~~~~ 148 (154)
+|..||++ .+++++++.++||+||+|||+|+|+....
T Consensus 317 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~ 362 (505)
T COG0366 317 PRLLSRFGDDVGGRDASAKLLAALLFLLPGTPFIYYGDELGLTNFK 362 (505)
T ss_pred cceeeeccCCccchHHHHHHHHHHHHhCCCCcEEecccccCCCCCC
Confidence 99999985 23467889999999999999999997643
No 10
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=99.06 E-value=9.3e-11 Score=104.07 Aligned_cols=122 Identities=11% Similarity=0.007 Sum_probs=79.1
Q ss_pred hhcccCC--c---hhHHHHHHHHhhcCCCceEEEEeecCHHHHHHhhhcCCCCCccccccccCCcCCC---CCCCHHHHH
Q psy12947 15 LVSCQVE--L---PQKEWWQTAIMYQIYPRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDPD---RNSNATTIS 86 (154)
Q Consensus 15 ~~~~~~~--~---~~re~R~vld~Y~g~~r~lVGE~~~~~~~~~~yyg~~~~~el~~~FNF~ll~~~~---~~~~~~~~~ 86 (154)
++.|... + -+|++|++++.. +.+++||+... ..|.+. ..+++||.|||.+...+- ..-++
T Consensus 199 Gt~c~~l~pet~~~l~~~r~~~~~~---~~~ll~E~~~~----~~~~~~-~gde~~mvY~F~lppl~l~al~~~~~---- 266 (470)
T TIGR03852 199 GTNDFFVEPEIWELLDEVRDILAPT---GAEILPEIHEH----YTIQFK-IAEHGYYVYDFALPMLVLYSLYSGKT---- 266 (470)
T ss_pred CCCcccCChhHHHHHHHHHHHhccC---CCEEEeHhhhh----cccccc-cccceeEEccCccchhhHHHhhccCH----
Confidence 4667432 2 456667777544 78999999431 123222 126999999999854211 01123
Q ss_pred HHHHHHHHhCCCCCCcceeccCCCc-----------------------------cccc------cc--hh----------
Q psy12947 87 RLLHNWLDNLPAEDIERGLIVSKSK-----------------------------GLTE------GT--VT---------- 119 (154)
Q Consensus 87 ~~i~~w~~~l~~~~wp~wvlgNHD~-----------------------------pR~v------SR--~g---------- 119 (154)
+.+.+|+..+|..+| -+|.|||- +|.. ++ ++
T Consensus 267 ~~l~~wl~~~p~~~~--nfL~sHDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~ 344 (470)
T TIGR03852 267 NRLADWLRKSPMKQF--TTLDTHDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALG 344 (470)
T ss_pred HHHHHHHHhCcccce--EEeecCCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhC
Confidence 456678888887666 56899991 1100 11 00
Q ss_pred ---HH--HHHHHHhhCCCceeeecccccccCCCccc
Q psy12947 120 ---AT--FTKISSLVVPDIVCGGWWFESGPQTKFEL 150 (154)
Q Consensus 120 ---~~--~l~~LlLtLpGt~~~y~geElG~~~~~~~ 150 (154)
.+ ++.+++++|||+|.+|||+|||+.+++++
T Consensus 345 ~~~~r~~~a~ai~~~lpGiP~iYy~~llg~~nD~~~ 380 (470)
T TIGR03852 345 DDDQAYLLARAIQFFAPGIPQVYYVGLLAGKNDIEL 380 (470)
T ss_pred CCHHHHHHHHHHHHcCCCCceEEechhhcCCchHHH
Confidence 11 35799999999999999999999998875
No 11
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=98.87 E-value=1.4e-09 Score=97.96 Aligned_cols=46 Identities=15% Similarity=0.005 Sum_probs=38.7
Q ss_pred ceeccCCCc-------cccccchh---HHHHHHHHhhCCCceeeecccccccCCCc
Q psy12947 103 RGLIVSKSK-------GLTEGTVT---ATFTKISSLVVPDIVCGGWWFESGPQTKF 148 (154)
Q Consensus 103 ~wvlgNHD~-------pR~vSR~g---~~~l~~LlLtLpGt~~~y~geElG~~~~~ 148 (154)
-.+++|||+ +|.++..+ .++++++++|+||+||+|||||+|+...+
T Consensus 368 vnfl~nHD~~gn~~~~~Rl~~~~~~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~ 423 (542)
T TIGR02402 368 VVFIQNHDQIGNRALGERLSQLLSPGSLKLAAALLLLSPYTPLLFMGEEYGATTPF 423 (542)
T ss_pred EEEccCcccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCceeeccHhhcCCCCC
Confidence 367899997 78876654 35678999999999999999999998865
No 12
>PLN00196 alpha-amylase; Provisional
Probab=98.73 E-value=2.1e-08 Score=88.20 Aligned_cols=37 Identities=14% Similarity=0.023 Sum_probs=31.1
Q ss_pred eeccCCCccccccchh-----HHHHHHHHhhCCCceeeeccc
Q psy12947 104 GLIVSKSKGLTEGTVT-----ATFTKISSLVVPDIVCGGWWF 140 (154)
Q Consensus 104 wvlgNHD~pR~vSR~g-----~~~l~~LlLtLpGt~~~y~ge 140 (154)
-+++|||.+|..+.+. -+++-+++||+||+||+|||+
T Consensus 308 tFvdNHDT~r~~~~~~~~~~~~~lAyA~iLT~pG~P~IyYg~ 349 (428)
T PLN00196 308 TFVDNHDTGSTQHMWPFPSDKVMQGYAYILTHPGNPCIFYDH 349 (428)
T ss_pred eeccCCCCccccccCCCccchHHHHHHHHHcCCCcceEeeCC
Confidence 5789999999988753 246778899999999999995
No 13
>PLN02361 alpha-amylase
Probab=98.65 E-value=5.7e-08 Score=84.93 Aligned_cols=37 Identities=16% Similarity=-0.018 Sum_probs=29.7
Q ss_pred eeccCCCccccccchhH-----HHHHHHHhhCCCceeeeccc
Q psy12947 104 GLIVSKSKGLTEGTVTA-----TFTKISSLVVPDIVCGGWWF 140 (154)
Q Consensus 104 wvlgNHD~pR~vSR~g~-----~~l~~LlLtLpGt~~~y~ge 140 (154)
-|+.|||.+|..+-+.. +++-+++||.||+||+|||.
T Consensus 282 TFvdNHDt~r~~~~~~~~~~~~~~AyA~iLT~pG~P~Vyyg~ 323 (401)
T PLN02361 282 TFIDNHDTGSTQAHWPFPSDHIMEGYAYILTHPGIPTVFYDH 323 (401)
T ss_pred EecccCcCcchhhccCCchHHHHHHHHHHHCCCCcCeEeecc
Confidence 58899999998776431 23567788999999999996
No 14
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=98.65 E-value=2.2e-08 Score=91.19 Aligned_cols=43 Identities=7% Similarity=-0.126 Sum_probs=36.1
Q ss_pred eeccCCCccccccchh--------------HHHHHHHHhhCCCceeeecccccccCC
Q psy12947 104 GLIVSKSKGLTEGTVT--------------ATFTKISSLVVPDIVCGGWWFESGPQT 146 (154)
Q Consensus 104 wvlgNHD~pR~vSR~g--------------~~~l~~LlLtLpGt~~~y~geElG~~~ 146 (154)
-+++|||++|..+|+. .+++.++++++||+|++|||+|+|+..
T Consensus 432 nyl~~HD~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~ 488 (605)
T TIGR02104 432 NYVECHDNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTK 488 (605)
T ss_pred EEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccC
Confidence 6789999999876632 345788999999999999999999863
No 15
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=98.49 E-value=4.4e-07 Score=83.34 Aligned_cols=83 Identities=7% Similarity=-0.052 Sum_probs=54.7
Q ss_pred hHHHHHHHHhhc-CCCceEEEEeecCHHHHHHhhhcCCCCCccccccccCCcCCC---CCCCHHHHHHHHHHHHHhC-CC
Q psy12947 24 QKEWWQTAIMYQ-IYPRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDPD---RNSNATTISRLLHNWLDNL-PA 98 (154)
Q Consensus 24 ~re~R~vld~Y~-g~~r~lVGE~~~~~~~~~~yyg~~~~~el~~~FNF~ll~~~~---~~~~~~~~~~~i~~w~~~l-~~ 98 (154)
.++.|++++.-. .+++++++|+...++++..|++ .++||.|||-...... ..-+++-++.+++...+.= ..
T Consensus 317 l~~~r~~l~~~~r~~Gg~ll~E~nl~~~d~~~~~g----~~~dl~~dF~t~p~~~~AL~tgda~pLr~~L~~~~~~gid~ 392 (688)
T TIGR02455 317 SLTGNQLIAGAIRKAGGFSFQELNLTIDDIAAMSH----GGADLSYDFITRPAYHHALLTGDTEFLRLMLKEMHAFGIDP 392 (688)
T ss_pred HHHHHHHHHHhhhcCCeeEeeeccCCHHHHHHHhC----CCcceeecccccHHHHHHHHcCCHHHHHHHHHhhhcCCCCc
Confidence 367898887211 1378999999999999999998 2899999997653100 0125666777666554321 22
Q ss_pred CCCcceeccCCCc
Q psy12947 99 EDIERGLIVSKSK 111 (154)
Q Consensus 99 ~~wp~wvlgNHD~ 111 (154)
.+|..+ +-|||-
T Consensus 393 ~~~~~~-LrNHDE 404 (688)
T TIGR02455 393 ASLIHA-LQNHDE 404 (688)
T ss_pred hhhhhh-ccCccc
Confidence 334443 788885
No 16
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=98.38 E-value=1.5e-07 Score=85.88 Aligned_cols=118 Identities=15% Similarity=-0.003 Sum_probs=63.9
Q ss_pred hhHHHHHHHHhhcCCCceEEEEeecCHHH-HHHhhhcCCCCCccccccccCCcCCC----CCCCHHHHH-HHHH-HHHHh
Q psy12947 23 PQKEWWQTAIMYQIYPRILIVESYTDIEN-TMKYFKYNGRPAAHYPFNFQLVIDPD----RNSNATTIS-RLLH-NWLDN 95 (154)
Q Consensus 23 ~~re~R~vld~Y~g~~r~lVGE~~~~~~~-~~~yyg~~~~~el~~~FNF~ll~~~~----~~~~~~~~~-~~i~-~w~~~ 95 (154)
-.+++|+.+.+.. ++.++|||.+++... +..+.. +..+++..+|+.++..+. .....+.+. ..+. .....
T Consensus 328 fl~~~~~~v~~~~-p~~~liaE~~~~~~~~~~~~~~--gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (613)
T TIGR01515 328 FLRKLNQTVYEAF-PGVVTIAEESTEWPGVTRPTDE--GGLGFHYKWNMGWMHDTLDYMSTDPVERQYHHQLITFSMLYA 404 (613)
T ss_pred HHHHHHHHHHHHC-CCeEEEEEeCCCCccccccccC--CcCCcCeeeCchHHHHHHHHHhhChhhHhhccccccHHHHHH
Confidence 3466677776543 388999998754322 222221 123567777765543100 000001110 0000 00011
Q ss_pred CCCCCCcceeccCCCc-----cccccchh---------HHHHHHHHhhCCCceeeecccccccCC
Q psy12947 96 LPAEDIERGLIVSKSK-----GLTEGTVT---------ATFTKISSLVVPDIVCGGWWFESGPQT 146 (154)
Q Consensus 96 l~~~~wp~wvlgNHD~-----pR~vSR~g---------~~~l~~LlLtLpGt~~~y~geElG~~~ 146 (154)
+. .++ ....|||. +|++.|.. .+++.++++++||+|++|||+|+|+..
T Consensus 405 ~~-e~~--~~~~sHD~~~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~ 466 (613)
T TIGR01515 405 FS-ENF--VLPLSHDEVVHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGS 466 (613)
T ss_pred hh-hcc--ccCCCCCCcccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCC
Confidence 11 112 14578998 67666642 245778899999999999999999954
No 17
>PRK13840 sucrose phosphorylase; Provisional
Probab=98.35 E-value=7.5e-07 Score=79.82 Aligned_cols=115 Identities=15% Similarity=0.071 Sum_probs=76.8
Q ss_pred hhHHHHHHHHhhcCCCceEEEEeecCHHHHHHhhhcC--CCCCccccccccCCcCCCCCCCHHHHHHHHHHHHHhCCCCC
Q psy12947 23 PQKEWWQTAIMYQIYPRILIVESYTDIENTMKYFKYN--GRPAAHYPFNFQLVIDPDRNSNATTISRLLHNWLDNLPAED 100 (154)
Q Consensus 23 ~~re~R~vld~Y~g~~r~lVGE~~~~~~~~~~yyg~~--~~~el~~~FNF~ll~~~~~~~~~~~~~~~i~~w~~~l~~~~ 100 (154)
-+++||++++.+ +..+|||+++ ||+.. -.+++|+.|||.+...+-. .-+..=.+.+.+|++..|.+.
T Consensus 215 ~l~~lr~~~~~~---~~~ll~Ei~~-------y~~~~~~~~~e~~~vYnF~Lp~ll~~-aL~~~~~~~L~~~l~~~p~~~ 283 (495)
T PRK13840 215 FIDRLAKEARAR---GMEVLVEIHS-------YYKTQIEIAKKVDRVYDFALPPLILH-TLFTGDVEALAHWLEIRPRNA 283 (495)
T ss_pred HHHHHHHHhhhc---CCEEEEeCcc-------ccCccccccccccEEecchhhHHHHH-HHHhCCchHHHHHHHhCCCcc
Confidence 568889999887 4679999864 44321 0148999999998642100 000000245577888888665
Q ss_pred CcceeccCCCcccc----------ccc------------h---h--------------------------------HH--
Q psy12947 101 IERGLIVSKSKGLT----------EGT------------V---T--------------------------------AT-- 121 (154)
Q Consensus 101 wp~wvlgNHD~pR~----------vSR------------~---g--------------------------------~~-- 121 (154)
.-++.|||--.. ... + | .+
T Consensus 284 --~n~L~~HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~l 361 (495)
T PRK13840 284 --VTVLDTHDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYL 361 (495)
T ss_pred --EEeeecCCCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHH
Confidence 477999997776 111 0 0 01
Q ss_pred HHHHHHhhCCCceeeecccccccCCCccc
Q psy12947 122 FTKISSLVVPDIVCGGWWFESGPQTKFEL 150 (154)
Q Consensus 122 ~l~~LlLtLpGt~~~y~geElG~~~~~~~ 150 (154)
++.++++++||+|-+|||.|||.+..+++
T Consensus 362 la~ai~~~~~GiP~iY~~~ll~~~ND~~~ 390 (495)
T PRK13840 362 AARAIQFFAPGIPQVYYVGLLAGPNDMEL 390 (495)
T ss_pred HHHHHHHcCCCcceeeechhhccCccHHH
Confidence 24689999999999999999999876653
No 18
>PRK12313 glycogen branching enzyme; Provisional
Probab=98.23 E-value=1.2e-06 Score=80.29 Aligned_cols=42 Identities=12% Similarity=-0.137 Sum_probs=33.1
Q ss_pred eccCCCc-----cccccchh---------HHHHHHHHhhCCCceeeecccccccCC
Q psy12947 105 LIVSKSK-----GLTEGTVT---------ATFTKISSLVVPDIVCGGWWFESGPQT 146 (154)
Q Consensus 105 vlgNHD~-----pR~vSR~g---------~~~l~~LlLtLpGt~~~y~geElG~~~ 146 (154)
.+.|||. +|+++|.. .+++.++++|+||+|++|||+|+|+..
T Consensus 424 l~~sHD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~ 479 (633)
T PRK12313 424 LPFSHDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFL 479 (633)
T ss_pred cCCCCcccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCc
Confidence 4578998 57777752 234667899999999999999999854
No 19
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.13 E-value=2.5e-06 Score=79.44 Aligned_cols=43 Identities=14% Similarity=-0.165 Sum_probs=32.9
Q ss_pred eccCCCcc-----ccccchh---------HHHHHHHHhhCCCceeeecccccccCCC
Q psy12947 105 LIVSKSKG-----LTEGTVT---------ATFTKISSLVVPDIVCGGWWFESGPQTK 147 (154)
Q Consensus 105 vlgNHD~p-----R~vSR~g---------~~~l~~LlLtLpGt~~~y~geElG~~~~ 147 (154)
.+.|||.+ |++.+.+ .+++.++++|+||+|++|||+|+|+...
T Consensus 520 l~~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~ 576 (726)
T PRK05402 520 LPLSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGRE 576 (726)
T ss_pred CCCCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCC
Confidence 45899986 4445532 2356789999999999999999999853
No 20
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=98.10 E-value=2.6e-06 Score=83.26 Aligned_cols=117 Identities=15% Similarity=0.002 Sum_probs=67.2
Q ss_pred hhHHHHHHHHhhcCCCceE-----EEEeecCHHHHHHhhhcCCCCCccccccccCCcC----CCCC-CCHHHHHHHHHHH
Q psy12947 23 PQKEWWQTAIMYQIYPRIL-----IVESYTDIENTMKYFKYNGRPAAHYPFNFQLVID----PDRN-SNATTISRLLHNW 92 (154)
Q Consensus 23 ~~re~R~vld~Y~g~~r~l-----VGE~~~~~~~~~~yyg~~~~~el~~~FNF~ll~~----~~~~-~~~~~~~~~i~~w 92 (154)
..+++++.+.+-. ++.++ +||.|..... .|-....... -..+|+.+-.. +..+ ..+.++.+.+...
T Consensus 354 f~~~~~~~l~ai~-~d~~l~~~~ligE~Wd~~~~--~~~~g~f~~~-~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs 429 (1221)
T PRK14510 354 FIDEFRQFLKAMD-QDPVLRRLKMIAEVWDDGLG--GYQYGKFPQY-WGEWNDPLRDIMRRFWLGDIGMAGELATRLAGS 429 (1221)
T ss_pred hHHHHHHHHHHhC-CCcCcccCcEEEecccCCCC--ccccCCCCcc-eeeeccHHHHHHHHHhcCCCchHHHHHHHHhCc
Confidence 3467777776553 24444 9999864211 1111110111 12356654221 0011 2356666666655
Q ss_pred HHhCCCC----CCcceeccCCCccccccchh-------------------------------------------HHHHHH
Q psy12947 93 LDNLPAE----DIERGLIVSKSKGLTEGTVT-------------------------------------------ATFTKI 125 (154)
Q Consensus 93 ~~~l~~~----~wp~wvlgNHD~pR~vSR~g-------------------------------------------~~~l~~ 125 (154)
.+.++.. .-.--+++|||.+|..+... .+.+.+
T Consensus 430 ~d~~~~~~~~~~~~iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~ 509 (1221)
T PRK14510 430 ADIFPHRRRNFSRSINFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLL 509 (1221)
T ss_pred HhhcCccCCCcccceEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHH
Confidence 5555521 11234889999999875432 235678
Q ss_pred HHhhCCCceeeecccccc
Q psy12947 126 SSLVVPDIVCGGWWFESG 143 (154)
Q Consensus 126 LlLtLpGt~~~y~geElG 143 (154)
++++.||+|++|||+|.|
T Consensus 510 ~l~~s~GiP~Iy~GdE~g 527 (1221)
T PRK14510 510 TLMSFPGVPMLYYGDEAG 527 (1221)
T ss_pred HHHhCCCCcEEecchhcc
Confidence 899999999999999999
No 21
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.91 E-value=1.3e-05 Score=73.86 Aligned_cols=116 Identities=10% Similarity=-0.078 Sum_probs=61.4
Q ss_pred hhHHHHHHHHhhcCCCceEEEEeecCHHHHH-HhhhcCCCCCccccccccCCcCCC----CCCCHHHH-HHHHHHHHHhC
Q psy12947 23 PQKEWWQTAIMYQIYPRILIVESYTDIENTM-KYFKYNGRPAAHYPFNFQLVIDPD----RNSNATTI-SRLLHNWLDNL 96 (154)
Q Consensus 23 ~~re~R~vld~Y~g~~r~lVGE~~~~~~~~~-~yyg~~~~~el~~~FNF~ll~~~~----~~~~~~~~-~~~i~~w~~~l 96 (154)
-++++++.+.+.. ++.++|||.+++-..+. ...+ ..+++..+|..++...- .+..-+.. ...+. .. .+
T Consensus 337 fl~~ln~~v~~~~-p~~~~iAE~~~~~~~v~~~~~~---G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~~lt-~~-~~ 410 (639)
T PRK14706 337 FLKRLNEVTHHMA-PGCMMIAEESTSFPGVTVPTPY---GLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHHKLT-FF-NV 410 (639)
T ss_pred HHHHHHHHHHHhC-CCeEEEEECCCCCcCcccccCC---CCccccEeccHHHHHHHHHhccCchhhhhchhccc-hh-hh
Confidence 4567777776653 37899999876422221 1111 13566666655543100 00000000 00000 00 01
Q ss_pred CCCCCcceeccCCCccccccc------hh--------HHHHHHHHhhCCCceeeeccccccc
Q psy12947 97 PAEDIERGLIVSKSKGLTEGT------VT--------ATFTKISSLVVPDIVCGGWWFESGP 144 (154)
Q Consensus 97 ~~~~wp~wvlgNHD~pR~vSR------~g--------~~~l~~LlLtLpGt~~~y~geElG~ 144 (154)
-.....-.+..|||..|...+ .| -+.+.++++|+||.|++|+|.|+|.
T Consensus 411 y~~~e~~il~~SHDev~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~ 472 (639)
T PRK14706 411 YRTSENYVLAISHDEVVHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQ 472 (639)
T ss_pred hhccccEecCCCCccccCCccchHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCC
Confidence 111111125699999997532 12 2356788899999999999999995
No 22
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=97.77 E-value=1e-05 Score=76.26 Aligned_cols=42 Identities=12% Similarity=-0.087 Sum_probs=34.7
Q ss_pred eccCCCccccccchhHH-------------HHHHHHhhCCCceeeecccccccCC
Q psy12947 105 LIVSKSKGLTEGTVTAT-------------FTKISSLVVPDIVCGGWWFESGPQT 146 (154)
Q Consensus 105 vlgNHD~pR~vSR~g~~-------------~l~~LlLtLpGt~~~y~geElG~~~ 146 (154)
+|++||.+|..+.++.. ...+|++|.||+||+|||.|+|+..
T Consensus 619 lLds~dt~rfL~~~~~~~~~i~~~G~~nsLsq~lLklT~PGvPdIYqGtE~wd~s 673 (825)
T TIGR02401 619 VLDPPAGSLFLTDFVAREKKLIPAGLQNSLSQTLLKLTAPGVPDIYQGTEFWDLS 673 (825)
T ss_pred HcCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCcccccccccccC
Confidence 47899999998886532 2458999999999999999999875
No 23
>PLN02784 alpha-amylase
Probab=97.48 E-value=0.00027 Score=67.09 Aligned_cols=37 Identities=16% Similarity=0.046 Sum_probs=26.9
Q ss_pred eeccCCCccccccch-----hHHHHHHHHhhCCCceeeeccc
Q psy12947 104 GLIVSKSKGLTEGTV-----TATFTKISSLVVPDIVCGGWWF 140 (154)
Q Consensus 104 wvlgNHD~pR~vSR~-----g~~~l~~LlLtLpGt~~~y~ge 140 (154)
=|+.|||..+.-+-| ...+.-++.||.||+||+|||+
T Consensus 775 TFVDNHDTg~~Q~~w~~p~~k~~~AYAyILthpG~PcVFy~h 816 (894)
T PLN02784 775 TFIENHDTGSTQGHWRFPEGKEMQGYAYILTHPGTPAVFYDH 816 (894)
T ss_pred EEecCCCCCCCcccCCCCccchhhHHHHHHcCCCcceEEehh
Confidence 477999998864432 2223457777789999999997
No 24
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=96.67 E-value=0.00077 Score=64.26 Aligned_cols=22 Identities=14% Similarity=-0.183 Sum_probs=20.7
Q ss_pred HHHHhhCCCceeeecccccccC
Q psy12947 124 KISSLVVPDIVCGGWWFESGPQ 145 (154)
Q Consensus 124 ~~LlLtLpGt~~~y~geElG~~ 145 (154)
.+|++|+||+||+|||.|+|+.
T Consensus 707 ~lLqlT~PGVPdIYqG~E~wd~ 728 (879)
T PRK14511 707 TLLKLTSPGVPDVYQGTELWDF 728 (879)
T ss_pred HHHHHCcCCCCcccCcccchhc
Confidence 5899999999999999999987
No 25
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=96.43 E-value=0.0019 Score=60.25 Aligned_cols=24 Identities=13% Similarity=-0.287 Sum_probs=21.5
Q ss_pred HHHHHHhhCCCceeeecccccccC
Q psy12947 122 FTKISSLVVPDIVCGGWWFESGPQ 145 (154)
Q Consensus 122 ~l~~LlLtLpGt~~~y~geElG~~ 145 (154)
.+.+++++.||+|++|+|+|.|..
T Consensus 504 ~~~a~l~~s~GiP~i~~GdE~g~t 527 (688)
T TIGR02100 504 NLLATLLLSQGTPMLLAGDEFGRT 527 (688)
T ss_pred HHHHHHHHcCCCceeeecHhhccC
Confidence 466888899999999999999986
No 26
>PRK12568 glycogen branching enzyme; Provisional
Probab=96.10 E-value=0.019 Score=54.08 Aligned_cols=120 Identities=14% Similarity=-0.079 Sum_probs=67.1
Q ss_pred hhHHHHHHHHhhcCCCceEEEEeecC-HHHHHHhhhcCCCCCccccccccCCcCCC-----CCCCHHHHHHHHHHHHHhC
Q psy12947 23 PQKEWWQTAIMYQIYPRILIVESYTD-IENTMKYFKYNGRPAAHYPFNFQLVIDPD-----RNSNATTISRLLHNWLDNL 96 (154)
Q Consensus 23 ~~re~R~vld~Y~g~~r~lVGE~~~~-~~~~~~yyg~~~~~el~~~FNF~ll~~~~-----~~~~~~~~~~~i~~w~~~l 96 (154)
-+|++++.+.+.. ++.++|||.++. +......+. +.-++++-+|+..+...- .+...+.-.+.+..-+..
T Consensus 441 Fl~~ln~~v~~~~-P~~~~IAEest~~p~vt~p~~~--gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf~~~y- 516 (730)
T PRK12568 441 FLRQLNREIASQF-PGVLTIAEESTAWPGVTAPISD--GGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTFGLVY- 516 (730)
T ss_pred HHHHHHHHHHHHC-CCeEEEEEcCCCCccccccccC--CCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhhhhhh-
Confidence 3577777776543 389999998653 333333332 124688888888764200 011111112222211111
Q ss_pred CCCCCccee-ccCCCc-----cccccch---------hHHHHHHHHhhCCCceeeecccccccCCCc
Q psy12947 97 PAEDIERGL-IVSKSK-----GLTEGTV---------TATFTKISSLVVPDIVCGGWWFESGPQTKF 148 (154)
Q Consensus 97 ~~~~wp~wv-lgNHD~-----pR~vSR~---------g~~~l~~LlLtLpGt~~~y~geElG~~~~~ 148 (154)
.-..+++ -.|||. .+.+.+. ..+.+..++++.||.+.+|.|.|+|-...+
T Consensus 517 --~~~e~fvlp~SHDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew 581 (730)
T PRK12568 517 --AFSERFVLPLSHDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADW 581 (730)
T ss_pred --hhhccEeccCCCcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccc
Confidence 1112333 379997 3334332 134566789999999999999999976533
No 27
>PRK03705 glycogen debranching enzyme; Provisional
Probab=95.30 E-value=0.0073 Score=56.16 Aligned_cols=24 Identities=13% Similarity=-0.237 Sum_probs=20.9
Q ss_pred HHHHHHhhCCCceeeecccccccC
Q psy12947 122 FTKISSLVVPDIVCGGWWFESGPQ 145 (154)
Q Consensus 122 ~l~~LlLtLpGt~~~y~geElG~~ 145 (154)
.+.+++++.+|+|++|+|+|.|+.
T Consensus 498 ~~~a~l~~sqG~P~i~~GdE~grt 521 (658)
T PRK03705 498 ALLTTLLLSQGTPMLLAGDEHGHS 521 (658)
T ss_pred HHHHHHHHcCCchHHHhhHHhccC
Confidence 456777889999999999999985
No 28
>PRK14705 glycogen branching enzyme; Provisional
Probab=94.34 E-value=0.11 Score=51.68 Aligned_cols=26 Identities=12% Similarity=-0.211 Sum_probs=22.5
Q ss_pred HHHHHHHhhCCCceeeecccccccCC
Q psy12947 121 TFTKISSLVVPDIVCGGWWFESGPQT 146 (154)
Q Consensus 121 ~~l~~LlLtLpGt~~~y~geElG~~~ 146 (154)
+.+.+++++.||.|.+|+|.|.|-..
T Consensus 1050 R~~~a~~~~~PGk~LlFMG~Efgq~~ 1075 (1224)
T PRK14705 1050 RAFLAYQWAHPGKQLIFMGTEFGQEA 1075 (1224)
T ss_pred HHHHHHHHhcCCcCEEECccccCCCC
Confidence 45678889999999999999999764
No 29
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=93.90 E-value=0.028 Score=55.15 Aligned_cols=45 Identities=9% Similarity=-0.024 Sum_probs=33.8
Q ss_pred ceeccCCCccccccch-------------------hHHHHHHHHhhCCCceeeecccccccCCC
Q psy12947 103 RGLIVSKSKGLTEGTV-------------------TATFTKISSLVVPDIVCGGWWFESGPQTK 147 (154)
Q Consensus 103 ~wvlgNHD~pR~vSR~-------------------g~~~l~~LlLtLpGt~~~y~geElG~~~~ 147 (154)
--+++|||+.+...+. ..++.++++++-+|+|++|+|+|.|--..
T Consensus 752 VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~ 815 (1111)
T TIGR02102 752 VQYIAAHDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQ 815 (1111)
T ss_pred EEEEecCCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccC
Confidence 3677999999884321 22356778889999999999999986433
No 30
>PLN02960 alpha-amylase
Probab=93.07 E-value=0.37 Score=46.48 Aligned_cols=14 Identities=14% Similarity=-0.261 Sum_probs=13.2
Q ss_pred CCceeeeccccccc
Q psy12947 131 PDIVCGGWWFESGP 144 (154)
Q Consensus 131 pGt~~~y~geElG~ 144 (154)
||+|.+|.|+|.|-
T Consensus 727 Pg~pLlFMG~EFGh 740 (897)
T PLN02960 727 GSAYLNFMGNEFGH 740 (897)
T ss_pred CCCCEeeCccccCC
Confidence 89999999999995
No 31
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=81.76 E-value=1.1 Score=41.76 Aligned_cols=27 Identities=11% Similarity=-0.221 Sum_probs=22.6
Q ss_pred HHHHHHHhhCCCceeeecccccccCCC
Q psy12947 121 TFTKISSLVVPDIVCGGWWFESGPQTK 147 (154)
Q Consensus 121 ~~l~~LlLtLpGt~~~y~geElG~~~~ 147 (154)
+.++.++++.||+|.++.|+|-|--..
T Consensus 449 r~~~a~~~~~Pgk~LLFMG~Efgq~~e 475 (628)
T COG0296 449 RALAAYMWLHPGKPLLFMGEEFGQGRE 475 (628)
T ss_pred HHHHHHHHhCCCceeeecchhhccCCC
Confidence 346788889999999999999996543
No 32
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=74.61 E-value=8.1 Score=36.95 Aligned_cols=24 Identities=8% Similarity=-0.031 Sum_probs=20.8
Q ss_pred HHHHHHHhhCCCc-eeeeccccccc
Q psy12947 121 TFTKISSLVVPDI-VCGGWWFESGP 144 (154)
Q Consensus 121 ~~l~~LlLtLpGt-~~~y~geElG~ 144 (154)
+++.++++++||- ...|.|-|.|-
T Consensus 554 kmirl~~~~~pG~g~L~FMGnEFg~ 578 (758)
T PLN02447 554 KMIRLITMALGGEGYLNFMGNEFGH 578 (758)
T ss_pred HHHHHHHHhCCCCcceeecccccCC
Confidence 3456899999999 69999999996
No 33
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=63.32 E-value=4.2 Score=38.97 Aligned_cols=60 Identities=8% Similarity=-0.032 Sum_probs=37.4
Q ss_pred HHHHHHHHHHH-HhCCCCC-CcceeccCCCccccccch---------------------------hH-H--HHHHHHhhC
Q psy12947 83 TTISRLLHNWL-DNLPAED-IERGLIVSKSKGLTEGTV---------------------------TA-T--FTKISSLVV 130 (154)
Q Consensus 83 ~~~~~~i~~w~-~~l~~~~-wp~wvlgNHD~pR~vSR~---------------------------g~-~--~l~~LlLtL 130 (154)
..|++-+..|+ +++.+.+ -.+|+=-|-+...++.-| |. + .-.+|-+|-
T Consensus 639 ~a~~~R~~~~~~KAiREAKlrT~W~~Pne~YE~A~~d~~~~ll~~p~~~~~lesf~~~~~~i~~~G~~nsL~q~Llklta 718 (889)
T COG3280 639 AALRERLRDYAEKAIREAKLRTSWVDPNEEYEAAVHDFLEQLLDGPLARLFLESFEKFVAHINPAGAQNSLAQTLLKLTA 718 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhhhHHHHhHHHHHHHHHcC
Confidence 55666666665 3333333 356766666655554322 21 1 135788999
Q ss_pred CCceeeeccccc
Q psy12947 131 PDIVCGGWWFES 142 (154)
Q Consensus 131 pGt~~~y~geEl 142 (154)
||+|=+|||-|+
T Consensus 719 PGVPD~YQGtE~ 730 (889)
T COG3280 719 PGVPDIYQGTEL 730 (889)
T ss_pred CCCCccccchhh
Confidence 999999999996
No 34
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=45.13 E-value=24 Score=30.22 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcceec-cCCCccccccchh
Q psy12947 81 NATTISRLLHNWLDNLPAEDIERGLI-VSKSKGLTEGTVT 119 (154)
Q Consensus 81 ~~~~~~~~i~~w~~~l~~~~wp~wvl-gNHD~pR~vSR~g 119 (154)
+++.++..++.. ..+...+.|..++ ||||.++..|...
T Consensus 57 s~~a~~~~~~~l-~~l~~~~Ipv~~I~GNHD~~~~~~~~~ 95 (390)
T COG0420 57 SPRALKLFLEAL-RRLKDAGIPVVVIAGNHDSPSRLSEAS 95 (390)
T ss_pred CHHHHHHHHHHH-HHhccCCCcEEEecCCCCchhcccccc
Confidence 455554444433 3344467898888 9999999776654
No 35
>KOG2212|consensus
Probab=43.44 E-value=15 Score=32.59 Aligned_cols=34 Identities=12% Similarity=0.015 Sum_probs=24.7
Q ss_pred cceeccCCCccccccchhH-----------HHHHHHHhhCC-Ccee
Q psy12947 102 ERGLIVSKSKGLTEGTVTA-----------TFTKISSLVVP-DIVC 135 (154)
Q Consensus 102 p~wvlgNHD~pR~vSR~g~-----------~~l~~LlLtLp-Gt~~ 135 (154)
.--|..|||+.|-.+.-|+ +++..++|+.| |+|=
T Consensus 308 ~L~FvDNHDNQR~~gagga~VltYK~~~~YkmA~~FmLA~PyG~~R 353 (504)
T KOG2212|consen 308 ALVFVDNHDNQRGHGAGGASVLTYKDARLYKMAVGFMLAHPYGFTR 353 (504)
T ss_pred eEEEeccCcccccCCCCcceEEEecchhhhhhhhhhheecccCcch
Confidence 4457799999999887442 45667788887 6653
No 36
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=42.21 E-value=13 Score=38.67 Aligned_cols=19 Identities=16% Similarity=-0.010 Sum_probs=17.7
Q ss_pred HHHHhhCCCceeeeccccc
Q psy12947 124 KISSLVVPDIVCGGWWFES 142 (154)
Q Consensus 124 ~~LlLtLpGt~~~y~geEl 142 (154)
.+|.+|.||+|=+|||-|+
T Consensus 1500 ~lLklt~PGVPD~YQG~E~ 1518 (1693)
T PRK14507 1500 TLLKLTLPGVPDTYQGTEF 1518 (1693)
T ss_pred HHHHHcCCCCCcccCCccc
Confidence 4889999999999999997
No 37
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=40.27 E-value=36 Score=25.53 Aligned_cols=32 Identities=3% Similarity=0.005 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhCCC--CCCcceeccCCCccc
Q psy12947 82 ATTISRLLHNWLDNLPA--EDIERGLIVSKSKGL 113 (154)
Q Consensus 82 ~~~~~~~i~~w~~~l~~--~~wp~wvlgNHD~pR 113 (154)
...+.+.+.+|.+.+.. +..-.|+.||||..-
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 57 DEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence 34555666667665543 223468889999853
No 38
>KOG1432|consensus
Probab=38.23 E-value=17 Score=31.96 Aligned_cols=62 Identities=5% Similarity=-0.014 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhCCC---CCCc-ceeccCCCccccccchh-HHHHHHHHhhCCCc----eeeecccccc
Q psy12947 82 ATTISRLLHNWLDNLPA---EDIE-RGLIVSKSKGLTEGTVT-ATFTKISSLVVPDI----VCGGWWFESG 143 (154)
Q Consensus 82 ~~~~~~~i~~w~~~l~~---~~wp-~wvlgNHD~pR~vSR~g-~~~l~~LlLtLpGt----~~~y~geElG 143 (154)
+...++.-..|++++.. .+.| .-+|||||..=.++|+. .+.+..+-.+++-. .++|++++.|
T Consensus 113 g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~~~v~p~dg~~~~~~g~g 183 (379)
T KOG1432|consen 113 GHSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRLQLMKFISKLPYSLSQVNPPDGHMYIIDGFG 183 (379)
T ss_pred ccccHhHHHHHHHHhhhHhhcCCCeEEEecccccccccCHHHHHHHHhcCCCccccCCCcccceeeeeccc
Confidence 34556666677777653 3443 23589999999999974 22333333444433 6788877766
No 39
>PRK11627 hypothetical protein; Provisional
Probab=36.60 E-value=28 Score=27.65 Aligned_cols=21 Identities=24% Similarity=0.575 Sum_probs=18.0
Q ss_pred ChhHHHHHHHHHHHhhcccCC
Q psy12947 1 MLSRICLAVFGFLSLVSCQVE 21 (154)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (154)
|||.+.+++++.++++.|+..
T Consensus 1 mlkklll~l~a~~~L~gCA~~ 21 (192)
T PRK11627 1 MLKKILFPLVALFMLAGCATP 21 (192)
T ss_pred ChHHHHHHHHHHHHHHhhcCC
Confidence 899999998878888899873
No 40
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=31.61 E-value=42 Score=18.18 Aligned_cols=19 Identities=21% Similarity=0.663 Sum_probs=11.6
Q ss_pred ChhHHHHHHHHHHHhhccc
Q psy12947 1 MLSRICLAVFGFLSLVSCQ 19 (154)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (154)
|+|++-..+.+++.+..|+
T Consensus 6 mmKkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 6 MMKKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3456655555666667775
No 41
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=28.65 E-value=37 Score=28.58 Aligned_cols=33 Identities=0% Similarity=-0.191 Sum_probs=28.7
Q ss_pred CCcceeccCCCccccccchhHHHHHHHHhhCCC
Q psy12947 100 DIERGLIVSKSKGLTEGTVTATFTKISSLVVPD 132 (154)
Q Consensus 100 ~wp~wvlgNHD~pR~vSR~g~~~l~~LlLtLpG 132 (154)
-.||.|||.|--.|..+-+|++.+..|+-+.+-
T Consensus 85 itpciflgdhtgdrfsti~gd~yiltllnsm~n 117 (318)
T PF13258_consen 85 ITPCIFLGDHTGDRFSTIFGDQYILTLLNSMRN 117 (318)
T ss_pred cccceeecCcccchhhhhcchHHHHHHHHHHHh
Confidence 379999999999999999999998887766653
No 42
>PF02470 MCE: mce related protein; InterPro: IPR003399 This domain is found in all 24 mce genes associated with the four mammalian cell entry (mce) operons of Mycobacterium tuberculosis and their homologs in other Actinomycetales [, ]. The archetype (mce1A, Rv0169), was isolated as being necessary for colonisation of, and survival within, the macrophage []. The domain is also found in: Chloroplast Ycf22 and related cyanobacterial homologs, the majority of which have an N-terminal transmembrane domain and are putative ABC transporters. Proteobacterial homologs, which include YrbD, YebT, VpsC and Ttg2C, the latter being annotated as a toluene tolerance proteins, belong to the periplasmic substrate-binding ABC transporter superfamily.
Probab=27.74 E-value=25 Score=23.15 Aligned_cols=22 Identities=23% Similarity=0.033 Sum_probs=18.4
Q ss_pred CCCceeeecccccccCCCcccC
Q psy12947 130 VPDIVCGGWWFESGPQTKFELK 151 (154)
Q Consensus 130 LpGt~~~y~geElG~~~~~~~~ 151 (154)
-+|+|+.|.|-++|-=++..|.
T Consensus 16 ~~gs~V~~~Gv~VG~V~~i~l~ 37 (81)
T PF02470_consen 16 SVGSPVRYRGVEVGKVTSIELD 37 (81)
T ss_pred CCcCEEEECCEEEEEEEEEEEc
Confidence 4799999999999987777653
No 43
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=27.35 E-value=54 Score=23.41 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCcceeccCCCcccc
Q psy12947 82 ATTISRLLHNWLDNLPAEDIERGLIVSKSKGLT 114 (154)
Q Consensus 82 ~~~~~~~i~~w~~~l~~~~wp~wvlgNHD~pR~ 114 (154)
..+++. +.+|...++. ...-++.||||....
T Consensus 35 ~~~~~~-~~~~l~~~~~-~~~~~v~GNHD~~~~ 65 (135)
T cd07379 35 LEELQK-FLDWLKSLPH-PHKIVIAGNHDLTLD 65 (135)
T ss_pred HHHHHH-HHHHHHhCCC-CeEEEEECCCCCcCC
Confidence 344433 3456665542 122479999997543
No 44
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=26.20 E-value=35 Score=19.17 Aligned_cols=9 Identities=11% Similarity=-0.433 Sum_probs=7.5
Q ss_pred CCCceeeec
Q psy12947 130 VPDIVCGGW 138 (154)
Q Consensus 130 LpGt~~~y~ 138 (154)
-||+|++|+
T Consensus 12 rPg~pfl~~ 20 (29)
T PF10632_consen 12 RPGSPFLFT 20 (29)
T ss_pred cCCCcEEEE
Confidence 489999987
No 45
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.80 E-value=54 Score=26.60 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=13.8
Q ss_pred HHHHHHhCCCCC-Ccce-eccCCCccc
Q psy12947 89 LHNWLDNLPAED-IERG-LIVSKSKGL 113 (154)
Q Consensus 89 i~~w~~~l~~~~-wp~w-vlgNHD~pR 113 (154)
+..+...+.+.+ .|.. +.||||.+.
T Consensus 63 ~~~~l~~l~~~~~i~v~~i~GNHD~~~ 89 (253)
T TIGR00619 63 FNAFFRNLSDANPIPIVVISGNHDSAQ 89 (253)
T ss_pred HHHHHHHHHhcCCceEEEEccCCCChh
Confidence 334444443333 4554 569999864
No 46
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=25.78 E-value=80 Score=24.06 Aligned_cols=32 Identities=3% Similarity=-0.128 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhCCC------CCCcceeccCCCcccc
Q psy12947 83 TTISRLLHNWLDNLPA------EDIERGLIVSKSKGLT 114 (154)
Q Consensus 83 ~~~~~~i~~w~~~l~~------~~wp~wvlgNHD~pR~ 114 (154)
..+.+.+++|.+.+.. +..--++.||||....
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~~ 102 (171)
T cd07384 65 EEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGYG 102 (171)
T ss_pred HHHHHHHHHHHHHhcccccccCCceEEEECCccccCCC
Confidence 4455555555554331 2224467799998764
No 47
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=24.90 E-value=86 Score=25.67 Aligned_cols=33 Identities=6% Similarity=-0.009 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHhCCC--CCCc-ceeccCCCcc
Q psy12947 80 SNATTISRLLHNWLDNLPA--EDIE-RGLIVSKSKG 112 (154)
Q Consensus 80 ~~~~~~~~~i~~w~~~l~~--~~wp-~wvlgNHD~p 112 (154)
++.+++.+.++++.+.++. +..| -.+.||||.+
T Consensus 62 ~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig 97 (257)
T cd08163 62 WADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIG 97 (257)
T ss_pred CcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccC
Confidence 4556677777777776653 1234 3667999963
No 48
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=23.50 E-value=37 Score=23.04 Aligned_cols=17 Identities=0% Similarity=-0.338 Sum_probs=10.5
Q ss_pred CcceeccCCCccccccc
Q psy12947 101 IERGLIVSKSKGLTEGT 117 (154)
Q Consensus 101 wp~wvlgNHD~pR~vSR 117 (154)
---+++||||..-..+.
T Consensus 67 ~~~~~~GNHD~~~~~~~ 83 (200)
T PF00149_consen 67 PVYFILGNHDYYSGNSF 83 (200)
T ss_dssp TEEEEE-TTSSHHHHHH
T ss_pred cccccccccccceeccc
Confidence 34566799998865443
No 49
>KOG3662|consensus
Probab=21.80 E-value=1.2e+02 Score=27.11 Aligned_cols=35 Identities=9% Similarity=0.074 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCC-CCCcceec-cCCCcc
Q psy12947 78 RNSNATTISRLLHNWLDNLPA-EDIERGLI-VSKSKG 112 (154)
Q Consensus 78 ~~~~~~~~~~~i~~w~~~l~~-~~wp~wvl-gNHD~p 112 (154)
+.++.++|++..++...-++. +..++|++ ||||.-
T Consensus 108 ~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDIG 144 (410)
T KOG3662|consen 108 QWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDIG 144 (410)
T ss_pred ccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCccccc
Confidence 346899999999998888875 56888888 999953
No 50
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=21.21 E-value=42 Score=25.22 Aligned_cols=22 Identities=14% Similarity=-0.266 Sum_probs=14.1
Q ss_pred HHhhCCCceeeecccccccCCC
Q psy12947 126 SSLVVPDIVCGGWWFESGPQTK 147 (154)
Q Consensus 126 LlLtLpGt~~~y~geElG~~~~ 147 (154)
+..==||+|++.-||.+.-++.
T Consensus 82 i~pYPPGIPll~pGE~it~~~~ 103 (136)
T PF03711_consen 82 IVPYPPGIPLLVPGERITEETE 103 (136)
T ss_dssp BEECTTTS-SB-TTEEB-STTH
T ss_pred eeecCCCCcEECCccccccchH
Confidence 3444579999999999977653
No 51
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=20.36 E-value=68 Score=24.48 Aligned_cols=23 Identities=4% Similarity=-0.348 Sum_probs=14.7
Q ss_pred HHHHHhCCCCCCcceeccCCCcc
Q psy12947 90 HNWLDNLPAEDIERGLIVSKSKG 112 (154)
Q Consensus 90 ~~w~~~l~~~~wp~wvlgNHD~p 112 (154)
.........+.--.++.||||..
T Consensus 60 ~~l~~~~~~~~~v~~v~GNHD~~ 82 (217)
T cd07398 60 AALLRLADRGTRVYYVPGNHDFL 82 (217)
T ss_pred HHHHHHHHCCCeEEEECCCchHH
Confidence 33444444455677888999974
No 52
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=20.10 E-value=47 Score=24.49 Aligned_cols=21 Identities=10% Similarity=-0.233 Sum_probs=13.3
Q ss_pred HHHHhCCCCCCcceeccCCCccc
Q psy12947 91 NWLDNLPAEDIERGLIVSKSKGL 113 (154)
Q Consensus 91 ~w~~~l~~~~wp~wvlgNHD~pR 113 (154)
.++...+ .--.|+.||||.+.
T Consensus 46 ~~l~~~~--~p~~~v~GNHD~~~ 66 (188)
T cd07392 46 NLLLAIG--VPVLAVPGNCDTPE 66 (188)
T ss_pred HHHHhcC--CCEEEEcCCCCCHH
Confidence 4555443 23468889999754
Done!