RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12947
(154 letters)
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family,
(beta/alpha)8 barrel; 1.60A {Pseudomonas
mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A
2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Length = 557
Score = 41.4 bits (98), Expect = 4e-05
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 23 PQKEWWQTAIMYQIYPR 39
P WW++A+ YQ+YPR
Sbjct: 2 PGAPWWKSAVFYQVYPR 18
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization,
isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Length = 570
Score = 40.6 bits (96), Expect = 8e-05
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 19 QVELPQKEWWQTAIMYQIYPR 39
Q E WW+ A+ YQIYPR
Sbjct: 11 QKESEYPAWWKEAVFYQIYPR 31
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle,
hydrolase; 2.00A {Geobacillus SP}
Length = 555
Score = 39.8 bits (94), Expect = 2e-04
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 24 QKEWWQTAIMYQIYPR 39
+K WW+ + YQIYPR
Sbjct: 2 KKTWWKEGVAYQIYPR 17
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase;
2.20A {Streptococcus mutans} PDB: 2zid_A*
Length = 543
Score = 39.8 bits (94), Expect = 2e-04
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 24 QKEWWQTAIMYQIYPR 39
QK WW A +YQIYP+
Sbjct: 2 QKHWWHKATVYQIYPK 17
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A
{Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A*
3axh_A*
Length = 589
Score = 39.5 bits (93), Expect = 2e-04
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 23 PQKEWWQTAIMYQIYPR 39
+ +WW+ A YQIYP
Sbjct: 10 TEPKWWKEATFYQIYPA 26
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel
glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1
c.1.8.1
Length = 558
Score = 39.1 bits (92), Expect = 2e-04
Identities = 9/16 (56%), Positives = 15/16 (93%)
Query: 24 QKEWWQTAIMYQIYPR 39
+K+WW+ +++YQIYPR
Sbjct: 2 EKQWWKESVVYQIYPR 17
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 7e-04
Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 41/144 (28%)
Query: 12 FLSLVSCQV-ELPQKEWWQTAIMYQIYPRI--LIVESYTDIENTMKYFKYNGR------- 61
L + C+ +LP++ + PR +I ES D T +K+
Sbjct: 307 LLKYLDCRPQDLPRE-------VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 62 --------PAAHYPFNFQLVIDPDRNSN--ATTISRLLHNWLDNLPAEDIERGLIVSK-- 109
PA + +L + P +++ +S + W D + D+ ++V+K
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPP-SAHIPTILLSLI---WFD-VIKSDVM--VVVNKLH 412
Query: 110 SKGLTEGTVTATFTKISSLVVPDI 133
L E K S++ +P I
Sbjct: 413 KYSLVEKQ-----PKESTISIPSI 431
Score = 37.1 bits (85), Expect = 0.001
Identities = 24/149 (16%), Positives = 41/149 (27%), Gaps = 36/149 (24%)
Query: 1 MLSRICLAVFG-FLSLVSCQVELPQK-EWWQTA----IMYQIYPRILIVESYTDIENTMK 54
ML ++ + + S + + Q + + Y L+V +++N K
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL--NVQNA-K 257
Query: 55 YFKYNGRPAAHYPFNFQ---LVIDPDRNSNATTISRLLHNWLDNLPAEDIERGLIVSKSK 111
+ FN L+ R T D L A + S
Sbjct: 258 AWNA---------FNLSCKILLTT--RFKQVT----------DFLSAATTTHISLDHHSM 296
Query: 112 GLTEGTVTATFTKISSLVVPDI---VCGG 137
LT V + K D+ V
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich,
membrane protein; 2.20A {Bacteroides thetaiotaomicron}
PDB: 3k8m_A* 3k8l_A*
Length = 669
Score = 36.6 bits (85), Expect = 0.002
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 23 PQKEWWQTAIMYQIYPR 39
E + I YQ+
Sbjct: 30 TWDETKRADISYQLLLY 46
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase
like, antiparallel beta-sheet, greek terminal domain,
extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Length = 424
Score = 36.3 bits (84), Expect = 0.002
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 21 ELPQKEWWQTAIMYQIY 37
ELP ++WW T +Y+I
Sbjct: 6 ELPAQKWWHTGALYRIG 22
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 36.1 bits (84), Expect = 0.003
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 27 WWQTAIMYQIYPR 39
+ + Y+I+ R
Sbjct: 1 FEKHGTYYEIFVR 13
Score = 35.7 bits (83), Expect = 0.004
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 26 EWWQ--TAIMYQIYPRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDPDRNSNAT 83
WW+ + ++ P L+ E + E YF + FNF+L + +
Sbjct: 213 TWWEKFRQEIEEVKPVYLVGEVWDISETVAPYF----KYGFDSTFNFKL-AEAVIATAKA 267
Query: 84 TISRLLHNWLDNLPAE 99
+ ++
Sbjct: 268 GFPFGFNKKAKHIYGV 283
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.004
Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 63/160 (39%)
Query: 3 SRICLAVFG-------FLSLVSCQVELPQKEWWQTAIMYQIYPRILIVESYTDIENTMKY 55
+++ A+FG + EL + +YQ Y ++V I+ + +
Sbjct: 154 AQLV-AIFGGQGNTDDYFE------EL-RD-------LYQTYH--VLVGDL--IKFSAET 194
Query: 56 FKYNGRPAAHYPFNFQLVIDPDRNSNATTISRLLHNWLDN---LPAED-----------I 101
R F ++ + WL+N P +D I
Sbjct: 195 LSELIRTTLDAEKVFTQGLN-------------ILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 102 ERGL-------IVSKSKGLTEGTVTATFTKISSLVVPDIV 134
G+ + +K G T G + + + +V
Sbjct: 242 --GVIQLAHYVVTAKLLGFTPGELRSYLKGATG-HSQGLV 278
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 34.4 bits (79), Expect = 0.012
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 26 EWWQTAIMYQIYPR 39
W+ + YQI+
Sbjct: 221 RWYMGTVYYQIFID 234
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase,
PSI-2, protein structure initiative; 2.00A
{Lactobacillus plantarum}
Length = 449
Score = 33.9 bits (78), Expect = 0.015
Identities = 2/15 (13%), Positives = 8/15 (53%)
Query: 25 KEWWQTAIMYQIYPR 39
+ + ++Y ++ R
Sbjct: 7 QTQLRNEMIYSVFVR 21
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase,
maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Length = 637
Score = 32.1 bits (72), Expect = 0.060
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 23 PQKEWWQTAIMYQIYPR 39
+W + +++Y PR
Sbjct: 76 KTPDWIKRSVVYGSLPR 92
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA,
national project on structural and functional analyses;
HET: GLC; 2.30A {Thermus thermophilus}
Length = 475
Score = 31.9 bits (73), Expect = 0.063
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 27 WWQTAIMYQIYPR 39
W++ A YQI+P
Sbjct: 3 WYEGAFFYQIFPD 15
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose,
(beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Length = 441
Score = 31.4 bits (72), Expect = 0.10
Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 5/64 (7%)
Query: 37 YPRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDPDRNSNATTISRLLHNWLDNL 96
I + E + + ++ + Y NF L+ + +
Sbjct: 209 LKGIFLAEIWAEARMVDEHGRI-----FGYMLNFDTSHCIKEAVWKENTRVLIESIERAV 263
Query: 97 PAED 100
A+D
Sbjct: 264 IAKD 267
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes,
hydrolase, glycosidase, neopullu; 2.37A {Nostoc
punctiforme} PDB: 2wcs_A 2wkg_A
Length = 488
Score = 30.8 bits (70), Expect = 0.14
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 26 EWWQTAIMYQIYPR 39
+W + A+ YQI+P
Sbjct: 7 DWVKHAVFYQIFPD 20
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A
{Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1
c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A*
2d0g_A* 2d0h_A* 1izk_A
Length = 637
Score = 30.2 bits (68), Expect = 0.25
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 26 EWWQTAIMYQIYP 38
+W + +MYQI+P
Sbjct: 128 DWLKNGVMYQIFP 140
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.27
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 14/40 (35%)
Query: 44 ESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDPDRNSNAT 83
++ ++ ++K + + PA L I AT
Sbjct: 20 QALKKLQASLKLYADDSAPA--------LAI------KAT 45
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP}
SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Length = 583
Score = 30.0 bits (68), Expect = 0.27
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 26 EWWQTAIMYQIYP-RILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVID 75
W + AI YQI+P R ++ D E T+ + + P+ + + Q VID
Sbjct: 126 AWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVID 176
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase;
2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2
b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A*
1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A*
1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Length = 585
Score = 30.0 bits (68), Expect = 0.33
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 26 EWWQTAIMYQIYP 38
EW + A++YQI+P
Sbjct: 126 EWAKEAVIYQIFP 138
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis,
glycoside hydrolase FA; 1.80A {Streptomyces coelicolor}
PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Length = 695
Score = 29.9 bits (67), Expect = 0.33
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 24 QKEWWQTAIMYQIYPR 39
++E Y+ +PR
Sbjct: 225 ERERALYGAWYEFFPR 240
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus
stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB:
1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Length = 588
Score = 29.7 bits (67), Expect = 0.40
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 26 EWWQTAIMYQIYP-RILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVID 75
+W + + YQI+P R E + + + P + + + Q +ID
Sbjct: 130 DWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIID 180
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase,
(beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria
polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A*
1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A*
1s46_A* 1zs2_A*
Length = 628
Score = 29.4 bits (66), Expect = 0.51
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 9/71 (12%)
Query: 31 AIMYQIYP-RILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDPDR--NSNATTISR 87
A+M P E+ + ++Y G+ +N N+ AT
Sbjct: 314 AVMRIAAPAVFFKSEAIVHPDQVVQYI---GQDECQIGYNPLQ---MALLWNTLATREVN 367
Query: 88 LLHNWLDNLPA 98
LLH L
Sbjct: 368 LLHQALTYRHN 378
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus
circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB:
1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A*
1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A*
1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 28.6 bits (64), Expect = 0.94
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 23 PQKEWWQTAIMYQIYP 38
K+ + T ++YQI+
Sbjct: 7 SNKQNFSTDVIYQIFT 22
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL
ABD; 1.70A {Geobacillus stearothermophilus} SCOP:
b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Length = 686
Score = 28.7 bits (64), Expect = 0.95
Identities = 3/13 (23%), Positives = 6/13 (46%)
Query: 26 EWWQTAIMYQIYP 38
+ ++YQI
Sbjct: 4 ASVKGDVIYQIII 16
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable,
family 13 glycosyl hydrolas; 1.60A
{Thermoanaerobacterium thermosulfurigenorganism_taxid}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A*
1ciu_A 1a47_A 1pj9_A* 1cgt_A
Length = 683
Score = 28.3 bits (63), Expect = 1.2
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 19 QVELPQKEWWQTAIMYQIYP 38
+ + T ++YQI
Sbjct: 3 DTAVSNVVNYSTDVIYQIVT 22
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex,
glycosidase, hydrolase; HET: CE6 ACX; 1.65A
{Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A*
1h3g_A
Length = 601
Score = 27.9 bits (62), Expect = 1.6
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 25 KEWWQTAIMYQIYP 38
+ + +YQI P
Sbjct: 101 QGFGPGDAIYQIMP 114
>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural
genomics, NPPSFA, national proje protein structural and
functional analyses; 2.10A {Thermus thermophilus}
Length = 487
Score = 27.7 bits (61), Expect = 1.8
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 110 SKGLTEGTVTATFTKISSLVVP-----DIVCG 136
G G V A + +V P DI CG
Sbjct: 79 GYGFPIGGVAAFDPEEGGVVSPGGVGFDINCG 110
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A
{Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1
b.71.1.1 c.1.8.1
Length = 680
Score = 27.9 bits (62), Expect = 1.8
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 23 PQKEWWQTAIMYQIYP 38
K + + ++YQI
Sbjct: 4 LNKVNFTSDVVYQIVV 19
>3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A
{Burkholderia SP} PDB: 1y37_A
Length = 304
Score = 27.2 bits (61), Expect = 1.9
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 7/51 (13%)
Query: 60 GRPAAHYPFNFQLVIDPDR---NSNATTISRLLHNW----LDNLPAEDIER 103
R H+ F Q P++ T L W D E +E
Sbjct: 144 ARAYWHWYFLQQPAPYPEKVIGADPDTFYEGCLFGWGATGADGFDPEQLEE 194
>1m1c_A GAG protein, major coat protein; dsRNA virus structure, RNA-protein
interaction, mRNA decapping, L-A virus,
QUAI-equivalence; 3.50A {Saccharomyces cerevisiae virus
l-a} SCOP: e.42.1.1
Length = 680
Score = 27.3 bits (59), Expect = 2.8
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 28 WQTAIMYQIYPRILIVESYTDIENTMKYFKYNGRPAAHYPFN 69
W+ A ++ + Y D K++ NG H P
Sbjct: 510 WKLAWALRVAGYDTHFKVYGDTHGLTKFYADNGDTWTHIPEF 551
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB:
4ado_A
Length = 222
Score = 26.1 bits (57), Expect = 5.1
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 9/73 (12%)
Query: 85 ISRLLHNWLDNLPAEDIERGL--IVSKSKGLTEGTVTATFTKISSLVVPDIVCGGW---- 138
+ L++ L N E I V + + + F K+ + +P
Sbjct: 68 LKVLMNIRLSNKEIEAILNKFLEYVVPFELPSPQKLQKVFKKVKKIKIPQFEEYDLKVSS 127
Query: 139 ---WFESGPQTKF 148
W E K+
Sbjct: 128 FVGWNELASNRKY 140
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA;
1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB:
2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Length = 478
Score = 25.8 bits (57), Expect = 6.6
Identities = 2/13 (15%), Positives = 6/13 (46%)
Query: 26 EWWQTAIMYQIYP 38
W++ +Y +
Sbjct: 4 ADWRSQSIYFLLT 16
>3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP}
Length = 291
Score = 25.7 bits (57), Expect = 7.0
Identities = 6/50 (12%), Positives = 13/50 (26%), Gaps = 6/50 (12%)
Query: 60 GRPAAHYPFNFQLVIDPDR---NSNATTISRLLHNW---LDNLPAEDIER 103
H+ F Q P+ + + + L W + +
Sbjct: 144 ATAYYHWFFLIQPDNLPETLIGANPEYYLRKCLEKWGKDFSAFHPQALAE 193
>2y8n_A 4-hydroxyphenylacetate decarboxylase large subuni; lyase, radical
chemistry, metalloenzyme, iron-sulfur center; 1.75A
{Clostridium scatologenes} PDB: 2yaj_A*
Length = 897
Score = 25.4 bits (55), Expect = 9.3
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 85 ISRLLHNWLDNLPAEDIERGLIVSKSKGLTEG 116
+L+ + D+E +++ +G
Sbjct: 37 TQKLMDIYYTLKVTADMEAAYWYNRTWWENDG 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.437
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,401,664
Number of extensions: 129940
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 42
Length of query: 154
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 69
Effective length of database: 4,328,508
Effective search space: 298667052
Effective search space used: 298667052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)