RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12947
(154 letters)
>d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain
{Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}
Length = 432
Score = 36.7 bits (83), Expect = 7e-04
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 26 EWWQTAIMYQIYPRILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVIDPDRNSN 81
+W + +MYQI+P + + + YNG P + + DP +++
Sbjct: 6 DWLKNGVMYQIFPD-RFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNS 60
>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus
[TaxId: 1396]}
Length = 479
Score = 35.0 bits (79), Expect = 0.002
Identities = 9/16 (56%), Positives = 15/16 (93%)
Query: 24 QKEWWQTAIMYQIYPR 39
+K+WW+ +++YQIYPR
Sbjct: 2 EKQWWKESVVYQIYPR 17
>d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain
{Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}
Length = 382
Score = 33.9 bits (76), Expect = 0.005
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 26 EWWQTAIMYQIYP-RILIVESYTDIENTMKYFKYNGRPAAHYPFNFQLVID 75
W + AI YQI+P R ++ D E T+ + + P+ + + Q VID
Sbjct: 5 AWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVID 55
>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella
sp., lx3 [TaxId: 576]}
Length = 478
Score = 33.5 bits (75), Expect = 0.007
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 21 ELPQKEWWQTAIMYQIYPR 39
E P WW+ A+ YQIYPR
Sbjct: 1 EYP--AWWKEAVFYQIYPR 17
>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 382
Score = 33.1 bits (74), Expect = 0.010
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 26 EWWQTAIMYQIYPR 39
+W + + YQI+P
Sbjct: 7 DWVKDTVWYQIFPE 20
>d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain
{Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}
Length = 382
Score = 32.7 bits (73), Expect = 0.012
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 26 EWWQTAIMYQIYPR 39
EW + A++YQI+P
Sbjct: 6 EWAKEAVIYQIFPE 19
>d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga
maritima [TaxId: 2336]}
Length = 572
Score = 32.7 bits (73), Expect = 0.016
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 26 EWWQTAIMYQIYPR 39
+W + +++Y PR
Sbjct: 79 DWIKRSVVYGSLPR 92
>d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase
{Thermoanaerobacterium [TaxId: 28895]}
Length = 406
Score = 32.0 bits (71), Expect = 0.026
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 23 PQKEWWQTAIMYQIYPR 39
+ T ++YQI
Sbjct: 7 SNVVNYSTDVIYQIVTD 23
>d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain
{Flavobacterium sp. 92 [TaxId: 197856]}
Length = 422
Score = 30.5 bits (67), Expect = 0.067
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 24 QKEWWQTAIMYQIYPR 39
++ + +YQI P
Sbjct: 5 RQGFGPGDAIYQIMPD 20
>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus
oryzae, Taka-amylase [TaxId: 5062]}
Length = 381
Score = 28.8 bits (63), Expect = 0.26
Identities = 2/13 (15%), Positives = 6/13 (46%)
Query: 27 WWQTAIMYQIYPR 39
W++ +Y +
Sbjct: 5 DWRSQSIYFLLTD 17
>d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus
niger, acid amylase [TaxId: 5061]}
Length = 381
Score = 28.5 bits (62), Expect = 0.37
Identities = 3/13 (23%), Positives = 6/13 (46%)
Query: 27 WWQTAIMYQIYPR 39
W+T +Y +
Sbjct: 5 SWRTQSIYFLLTD 17
>d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase
{Bacillus stearothermophilus, maltogenic alpha-amylase
[TaxId: 1422]}
Length = 407
Score = 28.1 bits (61), Expect = 0.41
Identities = 3/14 (21%), Positives = 6/14 (42%)
Query: 26 EWWQTAIMYQIYPR 39
+ ++YQI
Sbjct: 4 ASVKGDVIYQIIID 17
>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
butyricum [TaxId: 1492]}
Length = 786
Score = 26.3 bits (58), Expect = 1.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 85 ISRLLHNWLDNLPAEDIERGLIVSKSKGLTEG 116
I+ L L+ P + ER +++++S TEG
Sbjct: 12 INILKAQILNAKPCVESERAILITESFKQTEG 43
>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase
{Halothermothrix orenii [TaxId: 31909]}
Length = 409
Score = 26.2 bits (56), Expect = 1.9
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 27 WWQTAIMYQIYPR 39
+ + Y+I+ R
Sbjct: 1 FEKHGTYYEIFVR 13
>d2akja4 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 171
Score = 25.8 bits (56), Expect = 2.3
Identities = 7/71 (9%), Positives = 20/71 (28%), Gaps = 4/71 (5%)
Query: 74 IDPDRNSNATTISRLLHNWLDNLPAEDIERGLIVSKSKGLTEGT----VTATFTKISSLV 129
IDP + + L+ ++ ++ + K G+ ++ +
Sbjct: 15 IDPHEIVDTRPFTNLISQFVTANSRGNLSITNLPRKWNPCVIGSHDLYEHPHINDLAYMP 74
Query: 130 VPDIVCGGWWF 140
G+
Sbjct: 75 ATKNGKFGFNL 85
>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain
{Pseudomonas amyloderamosa [TaxId: 32043]}
Length = 475
Score = 25.4 bits (54), Expect = 3.9
Identities = 2/13 (15%), Positives = 8/13 (61%)
Query: 27 WWQTAIMYQIYPR 39
+ ++Y+++ R
Sbjct: 13 AQKDDVIYEVHVR 25
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 94
Score = 23.7 bits (51), Expect = 6.4
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 92 WLDNLPAEDIERGLIVSKSK 111
+ N+ ++I RG + +K
Sbjct: 69 NVKNVSVKEIRRGNVCGDAK 88
>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase,
central domain {Deinococcus radiodurans [TaxId: 1299]}
Length = 420
Score = 24.3 bits (51), Expect = 7.8
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 23 PQKEWWQTAIMYQIYPRILIVE-SYTDIENTMKYFKYNG 60
+ Y+++ E +Y + Y K G
Sbjct: 9 WHGIKLADCVFYEVHVGTFTPEGTYRAAAEKLPYLKELG 47
>d1u1ia1 c.2.1.3 (A:1-227,A:333-392) Myo-inositol 1-phosphate
synthase {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 287
Score = 24.1 bits (52), Expect = 8.2
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 4/32 (12%)
Query: 111 KGLTE--GTVTA--TFTKISSLVVPDIVCGGW 138
+G+ G V+ F I GG
Sbjct: 25 RGIAPKIGLVSELPHFEGIEKYAPFSFEFGGH 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.437
Gapped
Lambda K H
0.267 0.0400 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 616,269
Number of extensions: 26567
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 21
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)