Query psy1295
Match_columns 137
No_of_seqs 118 out of 1037
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 23:51:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ale_A SNU13, NHP2/L7AE family 100.0 3.1E-35 1.1E-39 215.8 14.6 126 12-137 1-126 (134)
2 2jnb_A NHP2-like protein 1; sp 100.0 1.6E-35 5.4E-40 219.9 12.8 125 13-137 20-144 (144)
3 3o85_A Ribosomal protein L7AE; 100.0 5.9E-34 2E-38 205.9 14.4 121 14-136 2-122 (122)
4 2aif_A Ribosomal protein L7A; 100.0 8.1E-34 2.8E-38 208.3 13.4 123 15-137 13-135 (135)
5 2lbw_A H/ACA ribonucleoprotein 100.0 1.3E-28 4.3E-33 177.5 13.7 112 24-135 1-121 (121)
6 1vq8_F 50S ribosomal protein L 100.0 8.2E-28 2.8E-32 172.7 14.0 110 24-135 10-119 (120)
7 2fc3_A 50S ribosomal protein L 99.9 3.5E-27 1.2E-31 170.4 14.0 110 24-135 9-118 (124)
8 1rlg_A 50S ribosomal protein L 99.9 3.7E-27 1.3E-31 169.0 10.7 110 24-135 8-117 (119)
9 3u5e_c L32, RP73, YL38, 60S ri 99.9 2.9E-26 1E-30 161.3 9.1 98 23-121 2-100 (105)
10 1xbi_A 50S ribosomal protein L 99.9 9.5E-26 3.3E-30 162.2 11.3 112 15-135 7-118 (120)
11 4a18_G RPL30; ribosome, eukary 99.9 5E-26 1.7E-30 159.8 9.0 98 23-121 2-100 (104)
12 3cpq_A 50S ribosomal protein L 99.9 2.4E-25 8E-30 157.8 10.9 103 24-127 2-105 (110)
13 3on1_A BH2414 protein; structu 99.9 8.1E-26 2.8E-30 157.8 7.6 87 28-116 3-89 (101)
14 3iz5_f 60S ribosomal protein L 99.9 2.4E-25 8.1E-30 158.8 9.8 97 27-124 10-107 (112)
15 3v7q_A Probable ribosomal prot 99.9 9.1E-26 3.1E-30 157.7 6.5 86 28-115 4-89 (101)
16 1w41_A 50S ribosomal protein L 99.9 7.1E-25 2.4E-29 152.9 9.5 95 30-125 3-98 (101)
17 3j21_Z 50S ribosomal protein L 99.9 1.9E-24 6.3E-29 150.3 10.1 94 31-125 3-97 (99)
18 2xzm_U Ribosomal protein L7AE 99.9 1.6E-24 5.3E-29 157.4 9.1 95 24-118 5-110 (126)
19 3v7e_A Ribosome-associated pro 99.9 4.5E-24 1.5E-28 144.2 9.4 79 35-114 3-81 (82)
20 3u5c_M 40S ribosomal protein S 99.9 3E-24 1E-28 159.0 8.1 108 23-130 20-141 (143)
21 3vi6_A 60S ribosomal protein L 99.9 4.5E-22 1.5E-26 144.2 8.5 100 29-129 13-114 (125)
22 2kg4_A Growth arrest and DNA-d 99.9 4.7E-21 1.6E-25 144.6 11.4 113 19-133 13-151 (165)
23 3jyw_G 60S ribosomal protein L 99.8 3.7E-21 1.3E-25 137.4 5.2 86 40-125 22-109 (113)
24 4a17_F RPL7A, 60S ribosomal pr 99.8 5.1E-19 1.8E-23 141.0 12.6 113 18-132 91-211 (255)
25 2zkr_f 60S ribosomal protein L 99.8 5.4E-20 1.9E-24 147.7 5.6 100 15-115 98-206 (266)
26 3izc_H 60S ribosomal protein R 99.8 5.9E-19 2E-23 140.9 10.8 107 12-118 90-206 (256)
27 3iz5_H 60S ribosomal protein L 99.8 2.1E-18 7.1E-23 137.3 11.3 115 11-128 87-214 (258)
28 3cg6_A Growth arrest and DNA-d 99.6 1.5E-15 5.1E-20 112.3 11.6 108 26-133 8-133 (146)
29 3ffm_A Growth arrest and DNA-d 99.5 2.2E-13 7.6E-18 102.4 12.9 108 26-133 29-154 (167)
30 3ir9_A Peptide chain release f 95.6 0.034 1.2E-06 41.2 6.7 64 39-102 42-149 (166)
31 1x52_A Pelota homolog, CGI-17; 94.8 0.054 1.8E-06 38.3 5.4 63 39-102 34-103 (124)
32 3nk6_A 23S rRNA methyltransfer 93.3 0.99 3.4E-05 35.6 10.6 77 44-124 36-114 (277)
33 3agk_A Peptide chain release f 92.9 0.17 5.9E-06 41.4 5.8 58 39-99 295-352 (373)
34 3j15_A Protein pelota; ribosom 92.7 0.099 3.4E-06 42.9 4.0 64 39-102 276-342 (357)
35 3oby_A Protein pelota homolog; 92.2 0.22 7.4E-06 41.0 5.6 72 28-102 253-328 (352)
36 3e20_C Eukaryotic peptide chai 92.1 0.43 1.5E-05 40.3 7.4 64 39-102 301-409 (441)
37 3agj_B Protein pelota homolog; 91.8 0.24 8.1E-06 40.6 5.3 64 39-102 268-337 (358)
38 3obw_A Protein pelota homolog; 91.6 0.29 1E-05 40.3 5.7 62 41-102 283-349 (364)
39 2qi2_A Pelota, cell division p 91.5 0.44 1.5E-05 38.9 6.7 60 42-102 264-324 (347)
40 1b93_A Protein (methylglyoxal 91.2 0.46 1.6E-05 34.8 5.8 54 47-100 70-128 (152)
41 3mca_B Protein DOM34, elongati 90.5 0.61 2.1E-05 38.7 6.6 63 39-102 287-356 (390)
42 1gz0_A Hypothetical tRNA/RRNA 90.5 1.1 3.8E-05 34.8 7.8 62 43-106 13-76 (253)
43 1dt9_A ERF1, protein (eukaryot 90.0 0.93 3.2E-05 37.8 7.4 63 39-101 296-401 (437)
44 2vgn_A DOM34; translation term 89.7 0.96 3.3E-05 37.4 7.2 64 39-102 293-362 (386)
45 1vmd_A MGS, methylglyoxal synt 88.2 0.58 2E-05 35.2 4.4 55 47-101 86-145 (178)
46 2xw6_A MGS, methylglyoxal synt 88.1 0.45 1.5E-05 34.1 3.6 55 46-100 61-120 (134)
47 1ipa_A RRMH, RNA 2'-O-ribose m 86.9 2.1 7.1E-05 33.7 7.2 64 41-106 26-92 (274)
48 3nkl_A UDP-D-quinovosamine 4-d 86.5 1.1 3.7E-05 30.5 4.8 54 45-98 51-104 (141)
49 2ohw_A YUEI protein; structura 85.6 3.8 0.00013 29.2 7.3 45 49-94 53-97 (133)
50 2yvq_A Carbamoyl-phosphate syn 83.3 1.5 5.1E-05 31.1 4.4 44 49-92 86-131 (143)
51 2jfn_A Glutamate racemase; cel 69.1 27 0.00093 27.0 8.4 68 3-93 48-115 (285)
52 2ggt_A SCO1 protein homolog, m 68.9 17 0.00058 24.3 6.5 47 58-105 60-110 (164)
53 2l82_A Designed protein OR32; 67.8 29 0.00099 24.4 8.4 80 49-129 16-100 (162)
54 2ioj_A Hypothetical protein AF 66.9 8.8 0.0003 26.4 4.7 54 44-100 56-113 (139)
55 1pq4_A Periplasmic binding pro 66.1 19 0.00065 28.0 7.0 64 67-136 219-288 (291)
56 3gi1_A LBP, laminin-binding pr 66.1 15 0.00053 28.5 6.4 68 68-136 211-285 (286)
57 3mfq_A TROA, high-affinity zin 64.4 8.5 0.00029 30.0 4.6 68 68-136 195-281 (282)
58 2prs_A High-affinity zinc upta 61.8 30 0.001 26.6 7.3 68 68-136 206-281 (284)
59 3fcs_B Integrin beta-3; beta p 57.2 41 0.0014 29.8 8.1 101 29-133 201-352 (690)
60 1shu_X Anthrax toxin receptor 57.0 42 0.0014 22.9 6.8 84 44-131 84-180 (182)
61 1x7o_A Avirb, rRNA methyltrans 56.9 26 0.00088 27.5 6.2 61 41-105 38-100 (287)
62 3gkn_A Bacterioferritin comigr 55.8 43 0.0015 22.4 6.6 51 50-105 60-111 (163)
63 2lqo_A Putative glutaredoxin R 54.6 40 0.0014 21.7 6.9 30 61-92 5-34 (92)
64 1sf9_A YFHH hypothetical prote 54.1 0.82 2.8E-05 32.6 -2.7 37 4-43 17-53 (128)
65 3md9_A Hemin-binding periplasm 54.1 48 0.0016 24.3 7.1 67 51-134 51-127 (255)
66 3cx3_A Lipoprotein; zinc-bindi 53.7 28 0.00097 26.8 5.9 68 68-136 209-283 (284)
67 3bzy_B ESCU; auto cleavage pro 53.2 11 0.00039 24.5 3.0 29 63-93 19-47 (83)
68 2vvt_A Glutamate racemase; iso 52.7 31 0.0011 26.8 6.0 40 50-92 77-116 (290)
69 1knx_A Probable HPR(Ser) kinas 52.4 15 0.00051 29.4 4.2 40 51-93 75-114 (312)
70 2gzm_A Glutamate racemase; enz 52.0 26 0.00089 26.8 5.4 66 3-92 30-95 (267)
71 3out_A Glutamate racemase; str 51.8 11 0.00037 29.3 3.2 66 3-92 34-100 (268)
72 3ixr_A Bacterioferritin comigr 51.7 40 0.0014 23.5 6.1 52 49-105 75-127 (179)
73 3dnf_A ISPH, LYTB, 4-hydroxy-3 51.5 91 0.0031 24.9 8.6 73 58-135 208-281 (297)
74 3t1o_A Gliding protein MGLA; G 51.0 29 0.001 23.5 5.1 75 59-134 97-192 (198)
75 2wji_A Ferrous iron transport 50.9 15 0.00052 24.9 3.6 75 58-132 80-163 (165)
76 1xzo_A BSSCO, hypothetical pro 50.1 23 0.0008 23.9 4.5 30 59-89 69-98 (174)
77 1xvl_A Mn transporter, MNTC pr 49.5 77 0.0026 25.0 8.0 68 68-136 236-313 (321)
78 3cwq_A Para family chromosome 49.3 17 0.00059 26.3 3.8 82 49-134 109-197 (209)
79 3u5r_E Uncharacterized protein 49.0 28 0.00095 25.2 5.0 57 49-105 82-142 (218)
80 1zuw_A Glutamate racemase 1; ( 47.8 32 0.0011 26.4 5.4 66 3-92 30-96 (272)
81 1toa_A Tromp-1, protein (perip 47.5 94 0.0032 24.3 8.2 68 68-136 229-311 (313)
82 3psh_A Protein HI_1472; substr 47.0 49 0.0017 25.3 6.3 38 51-93 76-113 (326)
83 2dwu_A Glutamate racemase; iso 46.9 31 0.0011 26.5 5.1 66 3-92 34-99 (276)
84 3nav_A Tryptophan synthase alp 46.2 56 0.0019 25.4 6.5 88 16-105 55-173 (271)
85 1b73_A Glutamate racemase; iso 45.2 38 0.0013 25.5 5.4 66 3-92 27-92 (254)
86 2jsy_A Probable thiol peroxida 44.2 27 0.00093 23.6 4.0 44 58-106 75-121 (167)
87 3av3_A Phosphoribosylglycinami 44.1 42 0.0014 25.0 5.3 42 48-93 17-60 (212)
88 2vt1_B Surface presentation of 43.8 15 0.0005 24.5 2.4 36 63-103 19-54 (93)
89 3szu_A ISPH, 4-hydroxy-3-methy 43.7 94 0.0032 25.1 7.7 73 58-135 224-297 (328)
90 2jfq_A Glutamate racemase; cel 43.3 12 0.00042 29.1 2.3 41 49-92 74-114 (286)
91 3drn_A Peroxiredoxin, bacterio 43.3 72 0.0025 21.4 9.2 50 51-105 55-105 (161)
92 3kkq_A RAS-related protein M-R 43.0 50 0.0017 22.2 5.3 53 77-133 114-181 (183)
93 1ivn_A Thioesterase I; hydrola 42.2 63 0.0022 22.1 5.8 46 48-93 88-140 (190)
94 3vus_A Poly-beta-1,6-N-acetyl- 42.1 1E+02 0.0036 23.4 7.5 63 30-92 32-97 (268)
95 1jdq_A TM006 protein, hypothet 42.1 69 0.0024 21.0 5.7 41 49-92 41-83 (98)
96 2fn4_A P23, RAS-related protei 42.1 41 0.0014 22.4 4.7 53 82-134 110-172 (181)
97 3a1s_A Iron(II) transport prot 41.9 1.1E+02 0.0036 22.9 7.5 78 55-132 79-165 (258)
98 3n2n_F Anthrax toxin receptor 41.9 41 0.0014 23.0 4.7 64 44-107 85-162 (185)
99 2av4_A Thioredoxin-like protei 41.8 11 0.00037 27.6 1.6 45 1-45 96-148 (160)
100 2o1e_A YCDH; alpha-beta protei 41.5 34 0.0012 26.9 4.7 68 68-136 222-300 (312)
101 3gas_A Heme oxygenase; FMN-bin 41.0 24 0.00081 27.4 3.6 54 12-67 51-105 (259)
102 1n3y_A Integrin alpha-X; alpha 40.8 36 0.0012 23.7 4.3 74 58-133 109-194 (198)
103 4dzz_A Plasmid partitioning pr 40.5 28 0.00094 24.3 3.7 85 47-136 113-205 (206)
104 1ytl_A Acetyl-COA decarboxylas 40.3 33 0.0011 25.0 4.1 49 41-92 18-67 (174)
105 3cbq_A GTP-binding protein REM 40.1 36 0.0012 23.8 4.3 50 85-134 129-188 (195)
106 1v7p_C Integrin alpha-2; snake 40.0 42 0.0014 23.7 4.6 88 44-133 86-196 (200)
107 3c01_E Surface presentation of 39.5 16 0.00054 24.6 2.0 29 63-93 19-47 (98)
108 3ce8_A Putative PII-like nitro 39.4 0.88 3E-05 32.0 -4.5 84 4-88 14-107 (120)
109 3hh8_A Metal ABC transporter s 38.9 61 0.0021 25.1 5.8 65 69-136 216-292 (294)
110 3vi3_B Integrin beta-1; beta p 38.8 76 0.0026 26.8 6.6 101 29-133 210-359 (454)
111 3dz8_A RAS-related protein RAB 38.8 30 0.001 23.9 3.6 76 59-134 95-186 (191)
112 1jkx_A GART;, phosphoribosylgl 38.4 49 0.0017 24.7 4.9 42 48-93 14-57 (212)
113 2oho_A Glutamate racemase; iso 38.4 22 0.00076 27.3 3.0 39 51-92 66-104 (273)
114 3cf4_G Acetyl-COA decarboxylas 38.4 93 0.0032 21.8 6.3 44 49-93 25-69 (170)
115 3c5c_A RAS-like protein 12; GD 38.2 30 0.001 23.9 3.5 49 85-133 126-185 (187)
116 3ecd_A Serine hydroxymethyltra 38.2 23 0.00078 27.4 3.1 44 49-93 162-207 (425)
117 3hz7_A Uncharacterized protein 38.0 59 0.002 20.8 4.7 40 51-93 18-60 (87)
118 1c7n_A Cystalysin; transferase 37.8 49 0.0017 25.4 5.0 44 48-91 153-202 (399)
119 3t7y_A YOP proteins translocat 37.5 18 0.0006 24.3 2.0 29 63-93 34-62 (97)
120 1svi_A GTP-binding protein YSX 37.4 94 0.0032 21.0 6.8 74 60-133 106-194 (195)
121 1d2f_A MALY protein; aminotran 37.4 46 0.0016 25.5 4.8 44 48-91 151-200 (390)
122 2l5o_A Putative thioredoxin; s 37.3 84 0.0029 20.4 7.4 45 58-105 60-105 (153)
123 2l69_A Rossmann 2X3 fold prote 37.3 97 0.0033 21.1 6.5 52 63-115 4-58 (134)
124 3g0t_A Putative aminotransfera 37.2 53 0.0018 25.6 5.2 44 49-92 172-221 (437)
125 3llu_A RAS-related GTP-binding 37.0 36 0.0012 23.6 3.8 39 60-98 96-141 (196)
126 3ujp_A Mn transporter subunit; 37.0 1.5E+02 0.0051 23.2 8.7 68 68-136 222-299 (307)
127 1ky3_A GTP-binding protein YPT 36.9 73 0.0025 21.1 5.3 75 59-133 81-177 (182)
128 3cx3_A Lipoprotein; zinc-bindi 36.6 48 0.0017 25.5 4.8 42 48-93 215-256 (284)
129 3iby_A Ferrous iron transport 36.5 67 0.0023 24.1 5.5 47 55-101 79-125 (256)
130 3gbx_A Serine hydroxymethyltra 36.3 28 0.00095 26.9 3.3 45 48-93 158-204 (420)
131 3pqc_A Probable GTP-binding pr 36.3 64 0.0022 21.7 5.0 75 59-133 104-193 (195)
132 3h5n_A MCCB protein; ubiquitin 35.8 46 0.0016 26.6 4.7 35 58-93 207-241 (353)
133 1t1v_A SH3BGRL3, SH3 domain-bi 35.7 78 0.0027 19.5 5.2 28 76-103 22-55 (93)
134 3bvp_A INT, TP901-1 integrase; 35.1 51 0.0018 22.2 4.3 67 27-93 23-109 (138)
135 3dfz_A SIRC, precorrin-2 dehyd 34.7 24 0.0008 26.8 2.6 37 59-99 91-127 (223)
136 3grc_A Sensor protein, kinase; 34.7 87 0.003 19.8 7.9 72 26-100 17-94 (140)
137 1kyq_A Met8P, siroheme biosynt 34.5 31 0.0011 27.0 3.3 35 59-95 106-143 (274)
138 3q85_A GTP-binding protein REM 34.2 96 0.0033 20.3 5.5 50 85-134 108-167 (169)
139 4hqo_A Sporozoite surface prot 34.0 1.4E+02 0.0047 22.2 6.9 77 29-105 84-178 (266)
140 3uhf_A Glutamate racemase; str 34.0 39 0.0013 26.3 3.9 66 3-92 51-116 (274)
141 3tkl_A RAS-related protein RAB 34.0 42 0.0014 22.8 3.7 75 60-134 89-179 (196)
142 1zud_1 Adenylyltransferase THI 33.9 46 0.0016 25.1 4.2 33 59-93 118-150 (251)
143 1wik_A Thioredoxin-like protei 33.6 93 0.0032 19.8 5.4 50 51-105 8-69 (109)
144 2iue_A Pactolus I-domain; memb 33.3 39 0.0013 25.5 3.6 70 58-131 103-211 (212)
145 3bzs_A ESCU; auto cleavage pro 33.2 28 0.00095 24.8 2.6 29 63-93 73-101 (137)
146 3hp4_A GDSL-esterase; psychrot 33.1 75 0.0026 21.4 4.9 43 51-93 95-144 (185)
147 3vqt_A RF-3, peptide chain rel 32.8 1.2E+02 0.0042 25.6 7.0 47 49-95 115-161 (548)
148 2jli_A YSCU, YOP proteins tran 32.8 29 0.001 24.2 2.6 29 63-93 63-91 (123)
149 3dzz_A Putative pyridoxal 5'-p 32.6 71 0.0024 24.2 5.1 45 48-92 149-199 (391)
150 3ist_A Glutamate racemase; str 32.4 50 0.0017 25.5 4.2 66 3-92 32-97 (269)
151 1toa_A Tromp-1, protein (perip 32.4 76 0.0026 24.9 5.4 42 48-90 235-278 (313)
152 1svv_A Threonine aldolase; str 32.3 69 0.0023 23.8 4.9 47 48-94 128-185 (359)
153 2jlj_A YSCU, YOP proteins tran 32.0 30 0.001 24.8 2.6 20 74-93 81-100 (144)
154 3v4g_A Arginine repressor; vib 32.0 19 0.00064 26.9 1.6 27 4-36 17-43 (180)
155 2etv_A Iron(III) ABC transport 31.9 1E+02 0.0035 23.9 6.1 49 52-105 89-151 (346)
156 1z08_A RAS-related protein RAB 31.9 69 0.0024 21.0 4.5 75 59-133 78-168 (170)
157 3qel_B Glutamate [NMDA] recept 31.6 81 0.0028 24.6 5.4 45 48-92 52-96 (364)
158 2h57_A ADP-ribosylation factor 31.5 53 0.0018 22.4 3.9 77 59-135 90-188 (190)
159 3lvj_C Sulfurtransferase TUSA; 31.2 97 0.0033 19.3 5.2 40 50-92 26-67 (82)
160 2prs_A High-affinity zinc upta 31.0 68 0.0023 24.5 4.8 40 49-92 213-252 (284)
161 4hb7_A Dihydropteroate synthas 30.7 1.6E+02 0.0056 23.0 6.9 75 14-92 53-131 (270)
162 1uf3_A Hypothetical protein TT 30.5 90 0.0031 21.7 5.1 43 51-93 24-70 (228)
163 2o52_A RAS-related protein RAB 30.5 81 0.0028 21.8 4.8 74 60-133 98-187 (200)
164 3t5g_A GTP-binding protein RHE 30.4 25 0.00087 23.7 2.0 39 60-98 78-123 (181)
165 3zy2_A Putative GDP-fucose pro 30.3 55 0.0019 27.0 4.2 72 50-127 270-342 (362)
166 3zyw_A Glutaredoxin-3; metal b 30.2 87 0.003 20.4 4.7 17 76-92 35-51 (111)
167 2obb_A Hypothetical protein; s 30.2 88 0.003 21.8 4.9 46 45-92 26-71 (142)
168 3t3p_B Integrin beta-3; integr 30.0 2.1E+02 0.0072 24.2 7.9 102 28-133 200-352 (472)
169 1tx2_A DHPS, dihydropteroate s 29.9 2E+02 0.0069 22.6 8.7 76 15-94 87-167 (297)
170 3ihw_A Centg3; RAS, centaurin, 29.8 73 0.0025 21.9 4.4 50 85-134 118-180 (184)
171 2r79_A Periplasmic binding pro 29.8 1.7E+02 0.0058 21.7 7.7 51 51-105 51-111 (283)
172 2rli_A SCO2 protein homolog, m 29.6 1.2E+02 0.0042 20.0 7.2 47 58-105 63-113 (171)
173 2oil_A CATX-8, RAS-related pro 29.6 89 0.003 21.2 4.8 74 60-133 98-187 (193)
174 2l2q_A PTS system, cellobiose- 29.6 72 0.0025 20.9 4.1 44 47-94 41-84 (109)
175 3ipz_A Monothiol glutaredoxin- 29.6 92 0.0031 20.0 4.7 42 61-105 19-72 (109)
176 1kao_A RAP2A; GTP-binding prot 29.5 36 0.0012 22.2 2.6 23 77-99 99-121 (167)
177 1xvw_A Hypothetical protein RV 29.4 59 0.002 21.5 3.8 42 59-105 70-114 (160)
178 2r7a_A Bacterial heme binding 29.3 1.6E+02 0.0055 21.3 7.5 51 51-105 51-112 (256)
179 3bc1_A RAS-related protein RAB 29.3 55 0.0019 21.9 3.6 71 59-133 93-184 (195)
180 3ib7_A ICC protein; metallopho 29.3 90 0.0031 23.3 5.2 48 48-95 53-109 (330)
181 3rjt_A Lipolytic protein G-D-S 29.0 40 0.0014 23.2 2.9 45 48-92 119-174 (216)
182 2o1e_A YCDH; alpha-beta protei 28.8 31 0.0011 27.1 2.5 41 49-93 229-269 (312)
183 4hn9_A Iron complex transport 28.8 1.7E+02 0.0057 22.4 6.8 48 52-105 109-165 (335)
184 2f7s_A C25KG, RAS-related prot 28.7 69 0.0023 22.3 4.2 75 59-133 107-198 (217)
185 2b9s_B DNA topoisomerase I-lik 28.6 16 0.00055 22.8 0.6 28 69-100 23-50 (62)
186 2f9s_A Thiol-disulfide oxidore 28.5 1.2E+02 0.0042 19.6 5.5 47 55-105 55-102 (151)
187 1jw9_B Molybdopterin biosynthe 28.5 64 0.0022 24.2 4.2 33 59-93 121-153 (249)
188 3qmx_A Glutaredoxin A, glutare 28.4 91 0.0031 19.8 4.4 29 61-92 17-46 (99)
189 2a5j_A RAS-related protein RAB 28.4 60 0.0021 22.2 3.8 76 59-134 93-184 (191)
190 1ax4_A Tryptophanase; tryptoph 28.2 85 0.0029 24.7 5.0 45 49-93 170-224 (467)
191 3p3v_A PTS system, N-acetylgal 28.2 71 0.0024 23.0 4.2 82 39-126 11-96 (163)
192 2vi8_A Serine hydroxymethyltra 28.2 40 0.0014 25.9 3.0 46 48-93 152-198 (405)
193 3b1s_B Flagellar biosynthetic 34.2 12 0.00042 24.6 0.0 29 62-92 18-46 (87)
194 2ywr_A Phosphoribosylglycinami 28.0 94 0.0032 23.0 5.0 42 48-93 15-58 (216)
195 2oqx_A Tryptophanase; lyase, p 28.0 95 0.0032 24.5 5.3 44 49-92 170-223 (467)
196 1q0p_A Complement factor B; VO 27.9 1.3E+02 0.0044 21.0 5.6 87 44-131 102-218 (223)
197 2wci_A Glutaredoxin-4; redox-a 27.9 1E+02 0.0035 21.1 4.9 30 76-105 54-89 (135)
198 3tha_A Tryptophan synthase alp 27.9 2.1E+02 0.007 22.0 9.6 117 16-134 49-196 (252)
199 4hqf_A Thrombospondin-related 27.8 1.9E+02 0.0064 21.5 10.5 62 44-105 108-181 (281)
200 1tp9_A Peroxiredoxin, PRX D (t 27.8 1.4E+02 0.0048 20.1 6.5 50 51-105 62-115 (162)
201 3f7j_A YVGN protein; aldo-keto 27.7 79 0.0027 24.0 4.6 64 29-92 120-189 (276)
202 3q72_A GTP-binding protein RAD 27.5 62 0.0021 21.2 3.6 51 84-134 104-164 (166)
203 3l8a_A METC, putative aminotra 27.5 85 0.0029 24.5 4.9 45 48-92 183-233 (421)
204 2wjg_A FEOB, ferrous iron tran 27.5 1.4E+02 0.0048 19.9 6.0 75 59-133 85-168 (188)
205 1pjq_A CYSG, siroheme synthase 27.4 41 0.0014 27.8 3.1 38 59-99 72-109 (457)
206 3i8s_A Ferrous iron transport 27.2 65 0.0022 24.2 4.0 44 57-100 83-126 (274)
207 1pav_A Hypothetical protein TA 27.1 44 0.0015 20.5 2.5 39 50-91 22-62 (78)
208 3gbv_A Putative LACI-family tr 26.9 1.3E+02 0.0044 21.8 5.5 42 51-94 61-102 (304)
209 3nra_A Aspartate aminotransfer 26.8 97 0.0033 23.6 5.0 44 48-92 169-218 (407)
210 3jy6_A Transcriptional regulat 26.8 1.7E+02 0.0057 21.0 6.2 66 24-94 18-93 (276)
211 3or5_A Thiol:disulfide interch 26.7 1.1E+02 0.0039 19.9 4.8 41 58-102 66-106 (165)
212 2hup_A RAS-related protein RAB 26.6 73 0.0025 22.2 4.0 75 59-133 101-192 (201)
213 2i6d_A RNA methyltransferase, 26.5 26 0.00087 26.9 1.6 58 41-106 25-83 (257)
214 1o69_A Aminotransferase; struc 26.2 55 0.0019 25.4 3.5 44 48-91 109-154 (394)
215 2p5s_A RAS and EF-hand domain 26.1 58 0.002 22.5 3.3 49 85-133 132-196 (199)
216 1zgz_A Torcad operon transcrip 26.1 1.2E+02 0.004 18.6 4.8 63 27-92 14-79 (122)
217 2wem_A Glutaredoxin-related pr 25.9 1.4E+02 0.0049 19.7 5.2 52 49-105 11-75 (118)
218 3p9x_A Phosphoribosylglycinami 25.9 1.2E+02 0.0043 22.6 5.3 40 50-93 18-59 (211)
219 1sff_A 4-aminobutyrate aminotr 25.8 80 0.0027 24.4 4.4 36 58-93 198-240 (426)
220 3l6u_A ABC-type sugar transpor 25.7 1.6E+02 0.0054 21.3 5.8 43 50-94 55-97 (293)
221 2cvb_A Probable thiol-disulfid 25.7 63 0.0021 22.2 3.4 46 60-105 66-115 (188)
222 2q8p_A Iron-regulated surface 25.5 1.5E+02 0.0052 21.4 5.7 50 51-105 52-110 (260)
223 3hh8_A Metal ABC transporter s 25.4 86 0.0029 24.3 4.5 39 48-90 221-259 (294)
224 3auf_A Glycinamide ribonucleot 25.4 1E+02 0.0034 23.3 4.7 41 48-92 36-78 (229)
225 1ujp_A Tryptophan synthase alp 25.2 1.8E+02 0.0062 22.3 6.3 90 16-108 50-170 (271)
226 2g6b_A RAS-related protein RAB 25.2 44 0.0015 22.3 2.4 75 59-133 83-173 (180)
227 4djt_A GTP-binding nuclear pro 25.1 1.6E+02 0.0054 20.4 5.6 74 60-133 85-174 (218)
228 3qq5_A Small GTP-binding prote 25.0 68 0.0023 26.4 4.0 48 50-99 106-153 (423)
229 2i4r_A V-type ATP synthase sub 24.9 79 0.0027 21.0 3.6 40 56-96 50-90 (102)
230 3nl6_A Thiamine biosynthetic b 24.8 1.4E+02 0.0049 25.4 6.1 54 50-105 30-87 (540)
231 3hh1_A Tetrapyrrole methylase 24.8 1.5E+02 0.0051 19.4 5.2 16 77-92 99-114 (117)
232 1pt6_A Integrin alpha-1; cell 24.8 41 0.0014 23.9 2.4 89 44-134 87-198 (213)
233 2atv_A RERG, RAS-like estrogen 24.8 1.7E+02 0.0057 19.9 6.5 58 77-134 123-191 (196)
234 3piu_A 1-aminocyclopropane-1-c 24.7 1.2E+02 0.0039 23.8 5.2 33 59-91 191-229 (435)
235 3b1v_A Ferrous iron uptake tra 24.7 2.3E+02 0.0077 21.4 7.2 45 55-99 76-120 (272)
236 3o63_A Probable thiamine-phosp 24.5 1.6E+02 0.0055 22.2 5.8 53 51-105 49-114 (243)
237 1y8q_A Ubiquitin-like 1 activa 24.5 49 0.0017 26.4 3.0 36 58-95 124-159 (346)
238 3o0k_A Aldo/keto reductase; ss 24.4 1E+02 0.0035 23.6 4.7 64 29-92 141-210 (283)
239 1z06_A RAS-related protein RAB 24.4 32 0.0011 23.6 1.7 40 59-98 93-139 (189)
240 3a8u_X Omega-amino acid--pyruv 24.3 71 0.0024 25.2 3.9 46 48-93 205-260 (449)
241 3dc7_A Putative uncharacterize 24.2 1.3E+02 0.0046 21.1 5.1 47 47-93 115-181 (232)
242 2glf_A Probable M18-family ami 24.1 56 0.0019 27.4 3.3 24 68-92 367-390 (450)
243 2iwr_A Centaurin gamma 1; ANK 24.1 89 0.003 20.8 3.9 75 60-134 73-169 (178)
244 1g16_A RAS-related protein SEC 24.1 54 0.0018 21.5 2.7 72 59-134 75-165 (170)
245 8abp_A L-arabinose-binding pro 24.0 1.6E+02 0.0056 21.3 5.7 40 52-93 50-89 (306)
246 3n5m_A Adenosylmethionine-8-am 24.0 79 0.0027 25.0 4.1 45 48-92 201-255 (452)
247 4dsu_A GTPase KRAS, isoform 2B 24.0 1.1E+02 0.0037 20.4 4.4 53 77-133 100-165 (189)
248 3cwc_A Putative glycerate kina 24.0 1.2E+02 0.004 25.1 5.2 52 42-93 266-326 (383)
249 3k53_A Ferrous iron transport 23.9 2.2E+02 0.0075 20.9 7.2 45 55-99 77-122 (271)
250 3l49_A ABC sugar (ribose) tran 23.8 1.3E+02 0.0046 21.6 5.1 43 50-94 52-94 (291)
251 3b3e_A YVGN protein; aldo-keto 23.6 99 0.0034 24.1 4.5 64 29-92 154-223 (310)
252 3h75_A Periplasmic sugar-bindi 23.5 1.2E+02 0.0039 23.0 4.9 40 51-93 53-93 (350)
253 1r8s_A ADP-ribosylation factor 23.5 1E+02 0.0036 20.0 4.1 74 59-132 67-160 (164)
254 2fu5_C RAS-related protein RAB 23.4 86 0.003 20.9 3.8 75 59-133 80-170 (183)
255 1xvl_A Mn transporter, MNTC pr 23.4 1.1E+02 0.0037 24.1 4.8 38 49-90 243-280 (321)
256 2wzm_A Aldo-keto reductase; ox 23.4 1.1E+02 0.0037 23.4 4.7 64 29-92 126-195 (283)
257 1x3s_A RAS-related protein RAB 23.3 89 0.003 21.0 3.8 74 60-133 88-177 (195)
258 3fw2_A Thiol-disulfide oxidore 23.3 1.6E+02 0.0054 19.1 8.2 44 58-105 68-115 (150)
259 4ds3_A Phosphoribosylglycinami 23.2 1.3E+02 0.0043 22.4 4.9 40 50-93 23-64 (209)
260 3kax_A Aminotransferase, class 23.2 1.2E+02 0.0041 22.8 4.9 44 48-92 146-195 (383)
261 4bas_A ADP-ribosylation factor 23.1 1.8E+02 0.006 19.6 7.1 49 86-134 127-189 (199)
262 2lnd_A De novo designed protei 23.1 1.7E+02 0.0057 19.3 6.5 53 47-100 39-93 (112)
263 4a29_A Engineered retro-aldol 23.0 2.7E+02 0.0092 21.7 7.5 63 45-108 113-176 (258)
264 2epj_A Glutamate-1-semialdehyd 22.9 1.1E+02 0.0037 24.0 4.7 42 50-91 192-242 (434)
265 2xfr_A Beta-amylase; hydrolase 22.9 1.1E+02 0.0038 26.5 4.9 46 45-90 320-376 (535)
266 1meo_A Phosophoribosylglycinam 22.8 45 0.0015 24.8 2.3 40 49-92 15-56 (209)
267 3ceu_A Thiamine phosphate pyro 22.7 1.2E+02 0.004 22.0 4.6 37 67-104 35-71 (210)
268 2d00_A V-type ATP synthase sub 22.7 1.7E+02 0.0059 19.3 5.8 19 74-92 34-52 (109)
269 3dxv_A Alpha-amino-epsilon-cap 22.5 1.3E+02 0.0044 23.5 5.1 44 49-92 188-241 (439)
270 3b0z_B Flagellar biosynthetic 28.0 18 0.00063 24.9 0.0 29 62-92 18-46 (114)
271 1iay_A ACC synthase 2, 1-amino 22.2 1.6E+02 0.0055 22.8 5.6 33 59-91 188-226 (428)
272 1tjy_A Sugar transport protein 22.2 1.4E+02 0.0048 22.3 5.1 39 52-93 53-92 (316)
273 1wn2_A Peptidyl-tRNA hydrolase 22.1 1.9E+02 0.0065 19.6 6.9 44 49-95 45-88 (121)
274 2yan_A Glutaredoxin-3; oxidore 21.8 1.2E+02 0.004 19.1 4.0 36 67-105 30-71 (105)
275 2bme_A RAB4A, RAS-related prot 21.8 1.2E+02 0.004 20.3 4.2 75 59-133 82-172 (186)
276 2q3h_A RAS homolog gene family 21.7 1.1E+02 0.0037 20.9 4.1 41 59-99 91-137 (201)
277 2cy8_A D-phgat, D-phenylglycin 21.7 1.1E+02 0.0038 24.2 4.5 44 49-92 189-241 (453)
278 1fov_A Glutaredoxin 3, GRX3; a 21.7 1.3E+02 0.0043 17.4 4.3 16 77-92 16-31 (82)
279 3v4v_B Integrin beta-7; cell a 21.7 2.2E+02 0.0074 24.4 6.5 73 57-133 259-371 (503)
280 2yv5_A YJEQ protein; hydrolase 21.6 66 0.0023 24.8 3.1 39 60-98 80-122 (302)
281 2x77_A ADP-ribosylation factor 21.6 1.2E+02 0.004 20.5 4.2 76 59-134 89-184 (189)
282 1wdp_A Beta-amylase; (beta/alp 21.6 1.1E+02 0.0039 26.1 4.7 46 45-90 322-378 (495)
283 1rlk_A Hypothetical protein TA 21.6 1.9E+02 0.0065 19.4 6.3 43 49-94 41-83 (117)
284 2ct6_A SH3 domain-binding glut 21.5 1.7E+02 0.0058 18.8 4.8 16 77-92 29-44 (111)
285 3p9d_H T-complex protein 1 sub 21.5 1.5E+02 0.0052 25.3 5.6 51 48-103 284-337 (568)
286 2i81_A 2-Cys peroxiredoxin; st 21.5 1.7E+02 0.0057 21.0 5.2 46 55-105 82-135 (213)
287 3cpj_B GTP-binding protein YPT 21.5 1.4E+02 0.0048 20.9 4.8 75 59-133 85-175 (223)
288 2fvy_A D-galactose-binding per 21.4 2.3E+02 0.0078 20.5 6.0 42 51-94 51-92 (309)
289 2gf9_A RAS-related protein RAB 21.3 92 0.0031 21.1 3.6 76 59-134 94-185 (189)
290 3gx8_A Monothiol glutaredoxin- 21.3 1.8E+02 0.0062 19.1 5.0 33 51-88 9-47 (121)
291 3m9w_A D-xylose-binding peripl 21.2 1.5E+02 0.005 21.8 4.9 43 50-94 49-91 (313)
292 3rot_A ABC sugar transporter, 21.1 1.7E+02 0.0059 21.3 5.3 41 51-93 53-93 (297)
293 1z7d_A Ornithine aminotransfer 21.1 1.4E+02 0.0046 23.7 5.0 45 49-93 202-253 (433)
294 3h7r_A Aldo-keto reductase; st 21.1 97 0.0033 24.3 4.0 64 29-92 153-222 (331)
295 3h7u_A Aldo-keto reductase; st 21.1 96 0.0033 24.3 4.0 64 29-92 157-226 (335)
296 2wfc_A Peroxiredoxin 5, PRDX5; 21.0 2E+02 0.0068 19.7 5.4 47 54-105 61-111 (167)
297 2afh_E Nitrogenase iron protei 21.0 2.5E+02 0.0087 20.6 6.4 55 75-133 193-248 (289)
298 2xgg_A Microneme protein 2; A/ 20.9 1.3E+02 0.0044 20.6 4.3 49 44-92 100-157 (178)
299 3lhk_A Putative DNA binding pr 20.9 55 0.0019 22.9 2.3 68 26-94 19-102 (154)
300 2wkq_A NPH1-1, RAS-related C3 20.8 1.7E+02 0.0056 21.7 5.2 41 59-99 226-272 (332)
301 1fa2_A Beta-amylase; TIM barre 20.8 1.1E+02 0.0037 26.3 4.4 46 45-90 324-380 (498)
302 1z05_A Transcriptional regulat 20.7 30 0.001 28.0 1.0 12 3-14 16-27 (429)
303 2ywi_A Hypothetical conserved 20.7 1.6E+02 0.0053 20.1 4.7 47 59-105 79-129 (196)
304 2dyk_A GTP-binding protein; GT 20.6 62 0.0021 21.0 2.5 69 60-131 80-159 (161)
305 1zod_A DGD, 2,2-dialkylglycine 20.6 77 0.0026 24.8 3.3 44 49-92 190-243 (433)
306 1aba_A Glutaredoxin; electron 20.6 1.5E+02 0.0051 17.8 5.6 16 77-92 19-34 (87)
307 2khp_A Glutaredoxin; thioredox 20.6 1.5E+02 0.005 17.7 5.4 29 62-92 8-36 (92)
308 3krb_A Aldose reductase; ssgci 20.5 1E+02 0.0035 24.1 4.1 63 30-92 156-224 (334)
309 3p7x_A Probable thiol peroxida 20.4 1.1E+02 0.0037 20.6 3.7 43 58-105 76-121 (166)
310 1cp2_A CP2, nitrogenase iron p 20.3 1.8E+02 0.006 21.1 5.2 54 76-133 191-245 (269)
311 2glj_A Probable M18-family ami 20.3 62 0.0021 27.1 2.8 23 68-91 379-401 (461)
312 3euc_A Histidinol-phosphate am 20.2 99 0.0034 23.3 3.8 45 48-92 146-198 (367)
313 3tqr_A Phosphoribosylglycinami 20.2 2.7E+02 0.0093 20.6 6.6 39 50-92 21-60 (215)
314 4e38_A Keto-hydroxyglutarate-a 20.2 1.1E+02 0.0039 23.2 4.1 50 48-104 96-146 (232)
315 1c1y_A RAS-related protein RAP 20.2 1.8E+02 0.0062 18.6 5.0 57 77-133 99-166 (167)
316 2b6h_A ADP-ribosylation factor 20.1 1.2E+02 0.0041 20.8 4.0 48 85-132 129-189 (192)
317 2dkj_A Serine hydroxymethyltra 20.1 71 0.0024 24.4 3.0 45 49-93 153-198 (407)
318 3fq8_A Glutamate-1-semialdehyd 20.1 1.5E+02 0.0051 23.0 5.0 44 49-92 187-239 (427)
319 3qja_A IGPS, indole-3-glycerol 20.1 2.7E+02 0.0093 21.3 6.4 55 47-102 124-179 (272)
320 3dmy_A Protein FDRA; predicted 20.1 1.5E+02 0.0052 24.9 5.2 38 51-90 53-90 (480)
321 2gkg_A Response regulator homo 20.0 1.6E+02 0.0054 17.8 6.9 64 26-92 16-86 (127)
No 1
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=100.00 E-value=3.1e-35 Score=215.84 Aligned_cols=126 Identities=70% Similarity=1.078 Sum_probs=120.6
Q ss_pred CCCCCcccCCCCChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEE
Q psy1295 12 EPAVNPKAYPLADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVF 91 (137)
Q Consensus 12 ~~~~~~~~~p~a~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~ 91 (137)
|..++|+++|||+.+++++++++|++|+++|+++.|.++|+++|++|++++||||+|++|.+++++++.+|++++|||++
T Consensus 1 ~~~~~~~a~p~a~~~~~~ki~~~L~lA~k~gkl~~G~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~ 80 (134)
T 2ale_A 1 MSAPNPKAFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVF 80 (134)
T ss_dssp CCCCCTTCCSBCCHHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEE
T ss_pred CCCCCccccCCCCHHHHHHHHHHHHHHHHcCCcccCchHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 67799999999999999999999999999999999999999999999999999999999977999999999999999999
Q ss_pred eCCHHHHHHHhCCCcceEEEEEEeCCCCChHHHHHHHHHHHHHhhC
Q psy1295 92 VRSKQALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIERLLI 137 (137)
Q Consensus 92 ~~tk~eLG~a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~~~~~ 137 (137)
++|+.+||+|||+++++++++|.+.+++++.++++++.+++++|++
T Consensus 81 v~sk~eLG~a~G~~~~~s~vaI~d~~~s~~~~l~~~i~~~~~~~~~ 126 (134)
T 2ale_A 81 VPSRVALGRACGVSRPVIAASITTNDASAIKTQIYAVKDKIETLLI 126 (134)
T ss_dssp ESCHHHHHHHTTCSSCCSEEEEECCTTCTTHHHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHhCCCCCeEEEEEEcCChHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999998778888888889999999999999999863
No 2
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=100.00 E-value=1.6e-35 Score=219.86 Aligned_cols=125 Identities=85% Similarity=1.256 Sum_probs=121.2
Q ss_pred CCCCcccCCCCChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 13 PAVNPKAYPLADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 13 ~~~~~~~~p~a~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
.+++|+++||++.+++++++++|++|+++|+++.|.++|+++|++|++++||||+||+|.+++++++.+|++++|||+++
T Consensus 20 ~~~~~~a~Pla~~~l~~ki~~~L~lA~kagkl~~G~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v 99 (144)
T 2jnb_A 20 ADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFV 99 (144)
T ss_dssp SCCCCCSSSBCCHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEE
T ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999779999999999999999999
Q ss_pred CCHHHHHHHhCCCcceEEEEEEeCCCCChHHHHHHHHHHHHHhhC
Q psy1295 93 RSKQALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIERLLI 137 (137)
Q Consensus 93 ~tk~eLG~a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~~~~~ 137 (137)
+|+.+||+|||+++++++++|...++|++.+.++++.++|++||+
T Consensus 100 ~sk~eLG~a~Gk~~~vs~vaI~~~~~s~i~~~~~~~~~~i~~l~~ 144 (144)
T 2jnb_A 100 RSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 144 (144)
T ss_dssp SCSHHHHHHHTCSSCCSEEEEECCTTCTTHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHhCCCCceEEEEEEeCCcHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999988999999999999999999999999986
No 3
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=100.00 E-value=5.9e-34 Score=205.90 Aligned_cols=121 Identities=47% Similarity=0.848 Sum_probs=114.2
Q ss_pred CCCcccCCCCChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 14 AVNPKAYPLADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 14 ~~~~~~~p~a~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
-++|+++|+|+++++++++++|++|+++|+++.|.++|+++|++|++++||+|+|++|.+++++++.+|++++|||++++
T Consensus 2 ~~~~~a~p~a~~~l~~kil~~L~lA~kagklv~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~ 81 (122)
T 3o85_A 2 QIDPRAIPFANEELSLELLNLVKHGASLQAIKRGANEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIG 81 (122)
T ss_dssp -CCTTSCSBCCHHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEES
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHHHhCCEeEcHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEEC
Confidence 37899999999999999999999999999999999999999999999999999999997568999999999999999999
Q ss_pred CHHHHHHHhCCCcceEEEEEEeCCCCChHHHHHHHHHHHHHhh
Q psy1295 94 SKQALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIERLL 136 (137)
Q Consensus 94 tk~eLG~a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~~~~ 136 (137)
|+.+||+|||+++++++++|.+.++ +.+.++++.++||+|.
T Consensus 82 sk~eLG~a~Gk~~~vs~vaI~d~~~--~~~~~~~~~~~i~~~~ 122 (122)
T 3o85_A 82 SKNALGRACNVSVPTIVASIGKHDA--LGNVVAEIVGKVEALV 122 (122)
T ss_dssp CHHHHHHHTTCSSCCSEEEECCCTT--THHHHHHHHHHHHTTC
T ss_pred CHHHHHHHhCCCCCEEEEEEEcccc--hHHHHHHHHHHHHhhC
Confidence 9999999999999998888877755 9999999999999873
No 4
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=100.00 E-value=8.1e-34 Score=208.27 Aligned_cols=123 Identities=69% Similarity=1.104 Sum_probs=111.9
Q ss_pred CCcccCCCCChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCC
Q psy1295 15 VNPKAYPLADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRS 94 (137)
Q Consensus 15 ~~~~~~p~a~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~t 94 (137)
+.|+++|+++.+++++++++|++|+++|+++.|.++|+++|++|++++||+|+|++|+...++++.+|++++|||++++|
T Consensus 13 ~~~~a~p~~~~~l~~ki~~~L~lA~kagklv~G~~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~s 92 (135)
T 2aif_A 13 FNPKAFPLASPDLNNKIINLVQQACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRS 92 (135)
T ss_dssp -----CCBCCSHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESC
T ss_pred CCccccccccHHHHHHHHHHHHHHHHcCCcccCHHHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECC
Confidence 67999999999999999999999999999999999999999999999999999999985569999999999999999999
Q ss_pred HHHHHHHhCCCcceEEEEEEeCCCCChHHHHHHHHHHHHHhhC
Q psy1295 95 KQALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIERLLI 137 (137)
Q Consensus 95 k~eLG~a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~~~~~ 137 (137)
+.+||+|||+++++++++|.+.++|++.++++++.++|++||+
T Consensus 93 k~eLG~a~G~~~~v~~vaI~d~~~s~i~~~~~~~~~~~~~~~~ 135 (135)
T 2aif_A 93 KVALGRACGVSRPVIAAAITSKDGSSLSSQITELKDQIEQILV 135 (135)
T ss_dssp HHHHHHHTTCSSCCSEEEEECCTTCTTHHHHHHHHHTTCC---
T ss_pred HHHHHHHhCCCCcEEEEEEEcCCcHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999888899999999999999999999999985
No 5
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=99.96 E-value=1.3e-28 Score=177.46 Aligned_cols=112 Identities=31% Similarity=0.609 Sum_probs=102.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhC
Q psy1295 24 DTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACG 103 (137)
Q Consensus 24 ~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G 103 (137)
+++++++++++|++|+++|+++.|.++|+++|++|++++||||+|++|.+++++++.+|++++|||++++|+.+||+|||
T Consensus 1 ~~~l~~ki~~~L~~a~k~gkl~~G~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~g 80 (121)
T 2lbw_A 1 SKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGA 80 (121)
T ss_dssp CHHHHHHHHHHHHHHHTTTCEEESHHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999999976899999999999999999999999999999
Q ss_pred CCcceEEEEEEeCCCC---------ChHHHHHHHHHHHHHh
Q psy1295 104 VSRPIIACSVTVDEGS---------QLKPQIQAIQQQIERL 135 (137)
Q Consensus 104 ~~~~v~~~ai~~~~~s---------~~~~~i~e~~~~~~~~ 135 (137)
+++++++++|.+.+.+ .+.|.++|+.++|..|
T Consensus 81 ~k~~~s~v~I~d~g~a~~~~~~~~~~y~~~y~~~~~~~~~~ 121 (121)
T 2lbw_A 81 TKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 121 (121)
T ss_dssp CSSCCSEEEECCSCTTGGGCSSTHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9888877788766543 4788899999988865
No 6
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=99.95 E-value=8.2e-28 Score=172.65 Aligned_cols=110 Identities=33% Similarity=0.596 Sum_probs=100.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhC
Q psy1295 24 DTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACG 103 (137)
Q Consensus 24 ~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G 103 (137)
+++++++++++|++|+++|+++.|.++|+++|++|++++||+|+|++|++++.+++.+|++++|||++++|+.+||+|||
T Consensus 10 p~~l~~~i~~~L~~A~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G 89 (120)
T 1vq8_F 10 PADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAG 89 (120)
T ss_dssp CHHHHHHHHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCEeECHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999999976799999999999999999999999999999
Q ss_pred CCcceEEEEEEeCCCCChHHHHHHHHHHHHHh
Q psy1295 104 VSRPIIACSVTVDEGSQLKPQIQAIQQQIERL 135 (137)
Q Consensus 104 ~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~~~ 135 (137)
+++++++++|... +.....++++.+++++|
T Consensus 90 ~~~~~~~vaI~d~--g~a~~~~~~l~~~~~~l 119 (120)
T 1vq8_F 90 LEVGSAAAAVTDA--GEADADVEDIADKVEEL 119 (120)
T ss_dssp CSSCCSEEEESSC--SSCHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEEecC--chHHHHHHHHHHHHHhc
Confidence 9977777777655 34467888888888876
No 7
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=99.95 E-value=3.5e-27 Score=170.36 Aligned_cols=110 Identities=35% Similarity=0.679 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhC
Q psy1295 24 DTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACG 103 (137)
Q Consensus 24 ~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G 103 (137)
+++++++++++|++|+++|+++.|.++|+++|++|++++||+|+|++|++++++++.+|++++|||++++|+.+||+|||
T Consensus 9 p~~l~~~i~~~L~lA~kagkl~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG~a~G 88 (124)
T 2fc3_A 9 PEDLAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAAG 88 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999999976799999999999999999999999999999
Q ss_pred CCcceEEEEEEeCCCCChHHHHHHHHHHHHHh
Q psy1295 104 VSRPIIACSVTVDEGSQLKPQIQAIQQQIERL 135 (137)
Q Consensus 104 ~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~~~ 135 (137)
+++++++++|...+ .....++++.++++.|
T Consensus 89 ~~~~~~~vaI~d~g--~a~~~~~~l~~~~~~l 118 (124)
T 2fc3_A 89 IEVAAASVAIIEPG--DAETLVREIVEKVKEL 118 (124)
T ss_dssp CSSCCSEEEEEECG--GGHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECcc--hHHHHHHHHHHHHHHh
Confidence 99777777777653 4456777777777765
No 8
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=99.94 E-value=3.7e-27 Score=168.99 Aligned_cols=110 Identities=38% Similarity=0.748 Sum_probs=99.6
Q ss_pred ChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhC
Q psy1295 24 DTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACG 103 (137)
Q Consensus 24 ~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G 103 (137)
+++++++++++|++|+++|+++.|.++|+++|++|++++||+|+|++|++++.+++.+|++++|||++++|+.+||+|||
T Consensus 8 p~~l~~~i~~~L~lA~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G 87 (119)
T 1rlg_A 8 PEDMQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAVG 87 (119)
T ss_dssp CSHHHHHHHHHHHHHHHHSEEEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhC
Confidence 36899999999999999999999999999999999999999999999975799999999999999999999999999999
Q ss_pred CCcceEEEEEEeCCCCChHHHHHHHHHHHHHh
Q psy1295 104 VSRPIIACSVTVDEGSQLKPQIQAIQQQIERL 135 (137)
Q Consensus 104 ~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~~~ 135 (137)
+++++++++|...+ .....++.+.+.+++|
T Consensus 88 ~~~~~~~vaI~d~g--~a~~~~~~l~~~~~~l 117 (119)
T 1rlg_A 88 IEVPCASAAIINEG--ELRKELGSLVEKIKGL 117 (119)
T ss_dssp CSSCCSEEEEEECG--GGHHHHHHHHHHHHTT
T ss_pred CCCCeEEEEEecCc--hHHHHHHHHHHHHHHh
Confidence 99777777777664 4456788888888776
No 9
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=99.93 E-value=2.9e-26 Score=161.32 Aligned_cols=98 Identities=19% Similarity=0.198 Sum_probs=85.7
Q ss_pred CChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEE-EeCCHHHHHHH
Q psy1295 23 ADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYV-FVRSKQALGRA 101 (137)
Q Consensus 23 a~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i-~~~tk~eLG~a 101 (137)
|+....++++++|++|+++|+++.|.++|.++|++|++++||+|+||+|+ ++++++.+|++++|||+ +++|+.+||+|
T Consensus 2 ~~~k~~~~i~~~L~la~kagk~v~G~~~v~kai~~gkaklVilA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s~~eLG~A 80 (105)
T 3u5e_c 2 APVKSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVL-RKSELEYYAMLSKTKVYYFQGGNNELGTA 80 (105)
T ss_dssp -------CHHHHHHHHHTTSEEEESHHHHHHHHHTTCCSEEEECTTSCHH-HHHHHHHHHHHHTCEEEECSSCHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEeCCCHHHHHHH
Confidence 34467889999999999999999999999999999999999999999997 99999999999999999 78999999999
Q ss_pred hCCCcceEEEEEEeCCCCCh
Q psy1295 102 CGVSRPIIACSVTVDEGSQL 121 (137)
Q Consensus 102 ~G~~~~v~~~ai~~~~~s~~ 121 (137)
||+++++++++|.+.+.+++
T Consensus 81 ~Gk~~~~~~vaI~D~G~a~~ 100 (105)
T 3u5e_c 81 VGKLFRVGVVSILEAGDSDI 100 (105)
T ss_dssp TTCSSCCSEEEEEECCSCCT
T ss_pred hCCcccEEEEEEeccchHHH
Confidence 99999987778888776654
No 10
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=99.93 E-value=9.5e-26 Score=162.16 Aligned_cols=112 Identities=32% Similarity=0.667 Sum_probs=97.4
Q ss_pred CCcccCCCCChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCC
Q psy1295 15 VNPKAYPLADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRS 94 (137)
Q Consensus 15 ~~~~~~p~a~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~t 94 (137)
..++..| ++++++++++|++| |+++.|.++|+++|++|++++||+|+|++|++++.+++.+|++++|||++++|
T Consensus 7 ~v~~~~p---~~l~~k~~~ll~~A---gkl~~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~s 80 (120)
T 1xbi_A 7 YVKFKVP---EEIQKELLDAVAKA---QKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVAS 80 (120)
T ss_dssp TCCSCCC---HHHHHHHHHHHHTC---SEEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESC
T ss_pred eecccCC---HHHHHHHHHHHHHc---CCccccHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCC
Confidence 3444444 79999999999998 99999999999999999999999999999976799999999999999999999
Q ss_pred HHHHHHHhCCCcceEEEEEEeCCCCChHHHHHHHHHHHHHh
Q psy1295 95 KQALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIERL 135 (137)
Q Consensus 95 k~eLG~a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~~~ 135 (137)
+.+||+|||+++++++++|...+.++ .++++.+++++|
T Consensus 81 k~eLG~a~G~~~~~s~vaI~d~g~a~---~l~~l~~~i~~l 118 (120)
T 1xbi_A 81 KQDLGKAAGLEVAASSVAIINEGDAE---ELKVLIEKVNVL 118 (120)
T ss_dssp HHHHHHHTTCSSCCSEEEEEECSCHH---HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEEeccchHH---HHHHHHHHHHHh
Confidence 99999999999777777887765432 377777777766
No 11
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=99.93 E-value=5e-26 Score=159.79 Aligned_cols=98 Identities=14% Similarity=0.233 Sum_probs=86.8
Q ss_pred CChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEE-EeCCHHHHHHH
Q psy1295 23 ADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYV-FVRSKQALGRA 101 (137)
Q Consensus 23 a~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i-~~~tk~eLG~a 101 (137)
......++++++|++|+++|+++.|.++|.++|++|++++||+|+|++|+ ++++++.+|++++|||+ +++|+.+||+|
T Consensus 2 ~~~k~~~~i~~~L~la~kagklv~G~~~v~kai~~gkaklViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s~~eLG~a 80 (104)
T 4a18_G 2 VKKVTQDNIQSKLALVMRSGKATLGYKSTIKAIRNGTAKLVFISNNCPTV-RKSEIEYYASLAQISIHHFVGSNVELGTA 80 (104)
T ss_dssp ------CHHHHHHHHHHHHSEEEESHHHHHHHHHHTCCCEEEECTTSCHH-HHHHHHHHHHHHTCEEEECSSCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhCCEeECHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCcEEEecCCHHHHHHH
Confidence 34567889999999999999999999999999999999999999999997 99999999999999999 69999999999
Q ss_pred hCCCcceEEEEEEeCCCCCh
Q psy1295 102 CGVSRPIIACSVTVDEGSQL 121 (137)
Q Consensus 102 ~G~~~~v~~~ai~~~~~s~~ 121 (137)
||+++++++++|.+.+.+++
T Consensus 81 ~Gk~~~~~~vaI~D~G~a~~ 100 (104)
T 4a18_G 81 CGKYHRCSTMAILDAGDSDI 100 (104)
T ss_dssp TTCSSCCSEEEEEECSSCGG
T ss_pred hCCccCEEEEEEeccchHHH
Confidence 99999987788888776654
No 12
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=2.4e-25 Score=157.75 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=89.7
Q ss_pred ChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe-CCHHHHHHHh
Q psy1295 24 DTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV-RSKQALGRAC 102 (137)
Q Consensus 24 ~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~-~tk~eLG~a~ 102 (137)
+...+++++++|++|+++|+++.|.++|+++|++|++++||+|+|++++ ++++++.+|++++||++.+ +|+.+||+||
T Consensus 2 ~~k~~~~i~~~L~la~kagkl~~G~~~v~kai~~gka~lViiA~D~~~~-~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a~ 80 (110)
T 3cpq_A 2 RRRENMDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKD-LEEDVKYYAKLSNIPVYQHKITSLELGAVC 80 (110)
T ss_dssp -----CHHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEECTTCBHH-HHHHHHHHHHHTTCCEEECCSCHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHcCCeeeCHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEEcCCHHHHHHHh
Confidence 3455678999999999999999999999999999999999999999775 9999999999999998877 9999999999
Q ss_pred CCCcceEEEEEEeCCCCChHHHHHH
Q psy1295 103 GVSRPIIACSVTVDEGSQLKPQIQA 127 (137)
Q Consensus 103 G~~~~v~~~ai~~~~~s~~~~~i~e 127 (137)
|+++++++++|.+.+.+++.+.+++
T Consensus 81 G~~~~~s~vaI~d~g~a~i~~~~~~ 105 (110)
T 3cpq_A 81 GKPFPVAALLVLDEGLSNIMELVEK 105 (110)
T ss_dssp TCSSCCSEEEEEECTTCCHHHHHHC
T ss_pred CCccceEEEEEecCCHHHHHHHhhc
Confidence 9998886777877777668777663
No 13
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=99.92 E-value=8.1e-26 Score=157.76 Aligned_cols=87 Identities=28% Similarity=0.366 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhCCCcc
Q psy1295 28 TTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACGVSRP 107 (137)
Q Consensus 28 ~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G~~~~ 107 (137)
+++++++|++|+++|+++.|.++|.++|++|++++||+|+|++|+ ++++++.+|++++|||++++|+.+||+|||++..
T Consensus 3 ~~ki~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~s~~eLG~a~Gk~~~ 81 (101)
T 3on1_A 3 EAKWLSLLGLAARARQLLTGEEQVVKAVQNGQVTLVILSSDAGIH-TKKKLLDKCGSYQIPVKVVGNRQMLGRAIGKHER 81 (101)
T ss_dssp CCHHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHH-HHHHHHHHHHHHTCCEEEESCHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHCCEeECHHHHHHHHHcCCCcEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCcCe
Confidence 368999999999999999999999999999999999999999997 9999999999999999999999999999999854
Q ss_pred eEEEEEEeC
Q psy1295 108 IIACSVTVD 116 (137)
Q Consensus 108 v~~~ai~~~ 116 (137)
+ +++|.+.
T Consensus 82 ~-~vai~d~ 89 (101)
T 3on1_A 82 V-VIGVKDA 89 (101)
T ss_dssp S-EEEECCH
T ss_pred E-EEEEECc
Confidence 4 4555443
No 14
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=99.92 E-value=2.4e-25 Score=158.79 Aligned_cols=97 Identities=20% Similarity=0.234 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe-CCHHHHHHHhCCC
Q psy1295 27 LTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV-RSKQALGRACGVS 105 (137)
Q Consensus 27 ~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~-~tk~eLG~a~G~~ 105 (137)
-.++++++|++|+++|+++.|.++|+++|++|++++||+|+||+|+ ++++++.+|+.++|||+++ +|+.+||+|||++
T Consensus 10 ~~~~i~~~L~la~kagk~~~G~~~t~kai~~gkakLVilA~D~~~~-~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~Gk~ 88 (112)
T 3iz5_f 10 SGENINNKLQLVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPPL-RKSEIETYAMLAKISVHHFHGNNVDLGTACGKY 88 (112)
T ss_dssp GGGHHHHHHHHHHTTCEEEESHHHHHHHHHTTCCSEEEECSCCCHH-HHHHHHHHHHHTTCCEECCCCTTCTHHHHHCTT
T ss_pred cHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCcEEEeCCCHHHHHHHhCCc
Confidence 3567999999999999999999999999999999999999999996 9999999999999999999 9999999999999
Q ss_pred cceEEEEEEeCCCCChHHH
Q psy1295 106 RPIIACSVTVDEGSQLKPQ 124 (137)
Q Consensus 106 ~~v~~~ai~~~~~s~~~~~ 124 (137)
+++++++|.+.+.+++...
T Consensus 89 ~~v~~vaI~D~G~a~~l~~ 107 (112)
T 3iz5_f 89 YRVCCLSILDPGDSDIIST 107 (112)
T ss_dssp CSSCEEEEECCSCCSHHHH
T ss_pred cceEEEEEeccchHHHHHh
Confidence 9988888888877766443
No 15
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=99.92 E-value=9.1e-26 Score=157.72 Aligned_cols=86 Identities=22% Similarity=0.340 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhCCCcc
Q psy1295 28 TTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACGVSRP 107 (137)
Q Consensus 28 ~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G~~~~ 107 (137)
+++++++|++|+++|+++.|.++|.++|++|++++||+|+|++|+ ++++++.+|+.++|||++++|+.+||++||++.+
T Consensus 4 ~~ki~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~vp~~~~~s~~eLG~A~Gk~~~ 82 (101)
T 3v7q_A 4 GMEWFPLLGLANRARKVVSGEDLVIKEIRNARAKLVLLTEDASSN-TAKKVTDKCNYYKVPYKKVESRAVLGRSIGKEAR 82 (101)
T ss_dssp CCTHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHH-HHHHHHHHHHHTTCCEEEESCHHHHHHHTTSSCC
T ss_pred cchhHHHhhhhhhhhhcccchhhhHHHHhcCceeEEEEecccccc-chhhhcccccccCCCeeeechHHHHHhhhCccce
Confidence 467999999999999999999999999999999999999999997 9999999999999999999999999999999965
Q ss_pred eEEEEEEe
Q psy1295 108 IIACSVTV 115 (137)
Q Consensus 108 v~~~ai~~ 115 (137)
++ ++|.+
T Consensus 83 ~~-~ai~D 89 (101)
T 3v7q_A 83 VV-VAVTD 89 (101)
T ss_dssp SE-EEECC
T ss_pred EE-EEEec
Confidence 53 55544
No 16
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=99.92 E-value=7.1e-25 Score=152.86 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe-CCHHHHHHHhCCCcce
Q psy1295 30 KILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV-RSKQALGRACGVSRPI 108 (137)
Q Consensus 30 kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~-~tk~eLG~a~G~~~~v 108 (137)
.++++|++|+++|+++.|.++|+++|++|++++||+|+|++++ ++++++.+|++++||++.+ +|+.+||+|||+++++
T Consensus 3 ~i~~~L~la~kagkl~~G~~~v~kai~~gka~lViiA~D~~~~-~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~G~~~~~ 81 (101)
T 1w41_A 3 DFAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPD-IKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTV 81 (101)
T ss_dssp CHHHHHHHHHHHSEEEESHHHHHHHHHHTCCSEEEEETTSCHH-HHHHHHHHHHHHTCCEEEESSCHHHHHHHTTCSSCC
T ss_pred hHHHHHHHHHHcCCEeECHHHHHHHHHcCCCcEEEEeCCCCHH-HHHHHHHHHHhcCCCEEEecCCHHHHHHHhCCCCcE
Confidence 4789999999999999999999999999999999999999886 9999999999999998875 9999999999999887
Q ss_pred EEEEEEeCCCCChHHHH
Q psy1295 109 IACSVTVDEGSQLKPQI 125 (137)
Q Consensus 109 ~~~ai~~~~~s~~~~~i 125 (137)
+++++...+.+++.+.+
T Consensus 82 ~~vai~d~g~a~i~~~~ 98 (101)
T 1w41_A 82 SALAVVDPGASRILALG 98 (101)
T ss_dssp CEEEEEECTTCCGGGGG
T ss_pred EEEEEecCCHHHHHHHh
Confidence 77777777666666554
No 17
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.91 E-value=1.9e-24 Score=150.35 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe-CCHHHHHHHhCCCcceE
Q psy1295 31 ILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV-RSKQALGRACGVSRPII 109 (137)
Q Consensus 31 l~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~-~tk~eLG~a~G~~~~v~ 109 (137)
+.+.|++|+++|+++.|.++|.++|++|++++||+|+|++++ ++++++.+|++++||++.+ +|+.+||+|||++++++
T Consensus 3 i~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~ 81 (99)
T 3j21_Z 3 LAFELRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKE-IKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVA 81 (99)
T ss_dssp HHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEECCCCHH-HHHHHHHHHHHTTCCEEEECCCSCGGGGTTCSTTCSE
T ss_pred HHHHHHHHHHhCCEeECHHHHHHHHHcCCccEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEeCCCHHHHHHHHCCCCCEE
Confidence 678999999999999999999999999999999999999886 9999999999999998665 99999999999999888
Q ss_pred EEEEEeCCCCChHHHH
Q psy1295 110 ACSVTVDEGSQLKPQI 125 (137)
Q Consensus 110 ~~ai~~~~~s~~~~~i 125 (137)
+++|.+.+.+++.++.
T Consensus 82 ~vaI~d~g~a~~l~~~ 97 (99)
T 3j21_Z 82 SLAIVDPGESKILAIA 97 (99)
T ss_dssp EEEESSCSSCSHHHHH
T ss_pred EEEEEccchHHHHHhh
Confidence 8889888778776554
No 18
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=99.91 E-value=1.6e-24 Score=157.38 Aligned_cols=95 Identities=18% Similarity=0.300 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhC
Q psy1295 24 DTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACG 103 (137)
Q Consensus 24 ~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G 103 (137)
+.+++++++++|+.|+++|+++.|.++++++|++|+++|||||+|++|.+++.+++.+|++++|||++++++.+||+|||
T Consensus 5 ~~~i~~~l~~~L~~A~~~gkl~~G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a~G 84 (126)
T 2xzm_U 5 NQQLNEVLAKVIKSSNCQDAISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLGEYLG 84 (126)
T ss_dssp THHHHHHHHHHHTTTTSSSCEEESHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHcCCEeecHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHHC
Confidence 45889999999999999999999999999999999999999999998756999999999999999999999999999999
Q ss_pred C-----------CcceEEEEEEeCCC
Q psy1295 104 V-----------SRPIIACSVTVDEG 118 (137)
Q Consensus 104 ~-----------~~~v~~~ai~~~~~ 118 (137)
+ .+++++++|...++
T Consensus 85 ~~k~d~~g~~rk~v~~s~vaI~d~g~ 110 (126)
T 2xzm_U 85 HFTANAKGEIKKVKGCSSLAIRKYAP 110 (126)
T ss_dssp CCCBCTTCCBSCCCCCCEEEESSCCT
T ss_pred CCccccccCcCceeeEEEEEEEecCc
Confidence 6 34466666655433
No 19
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=99.91 E-value=4.5e-24 Score=144.19 Aligned_cols=79 Identities=28% Similarity=0.482 Sum_probs=74.8
Q ss_pred HHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhCCCcceEEEEEE
Q psy1295 35 VQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIIACSVT 114 (137)
Q Consensus 35 L~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G~~~~v~~~ai~ 114 (137)
+...+++|+++.|.++|+++|++|++++||||+|++|+ ++++++.+|++++|||++++|+.+||+|||+++++++++|.
T Consensus 3 ~~~~~kagk~~~G~~~v~kai~~gkaklViiA~D~~~~-~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~Gk~~~~~~~ai~ 81 (82)
T 3v7e_A 3 YDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPI-LTSSVVSLAEDQGISVSMVESMKKLGKACGIEVGAAAVAII 81 (82)
T ss_dssp HHHHHHCSEEEESHHHHHHHHTTTCEEEEEEETTSCHH-HHHHHHHHHHHHTCCEEEESCHHHHHHHHTCSSCCSEEEEE
T ss_pred HHHHHHcCCeeEcHHHHHHHHHcCCeeEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEEEe
Confidence 45678999999999999999999999999999999995 99999999999999999999999999999999999888875
No 20
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=99.90 E-value=3e-24 Score=158.96 Aligned_cols=108 Identities=22% Similarity=0.311 Sum_probs=94.3
Q ss_pred CChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhH--hcCCCEEEeCCHHHHHH
Q psy1295 23 ADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCE--DKNVPYVFVRSKQALGR 100 (137)
Q Consensus 23 a~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~--~~~IP~i~~~tk~eLG~ 100 (137)
.+-+++++|+++|+.|+++|++++|.++++|+|++|++++||||+||+|.++.++++.+|+ +++|||++++|+.+||+
T Consensus 20 ~~md~~~aL~~vLk~A~~~g~l~~G~~et~Kal~kg~a~LvvLA~D~~~~~i~k~i~~lC~~~e~~IP~i~V~s~keLG~ 99 (143)
T 3u5c_M 20 AEVTIEDALKVVLRTALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLGE 99 (143)
T ss_dssp CCSCSSHHHHHHHHHHHHTTCEEESHHHHHHHHSSTTCSCEECCSCCSTTHHHHHHHHHHHCSSSCCCCCCCSCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHcCCEeEcHHHHHHHHhcCceeEEEEeCCCCHHHHHHHHHHHHhhhhhCCCEEEECCHHHHhH
Confidence 3446999999999999999999999999999999999999999999996679999999999 99999999999999999
Q ss_pred HhCC--------Ccc---eEEEEEEe-CCCCChHHHHHHHHH
Q psy1295 101 ACGV--------SRP---IIACSVTV-DEGSQLKPQIQAIQQ 130 (137)
Q Consensus 101 a~G~--------~~~---v~~~ai~~-~~~s~~~~~i~e~~~ 130 (137)
|||. +++ +++++|.+ +.+++..+.++++.+
T Consensus 100 a~Gl~k~d~~Gk~rkVv~~s~v~I~d~G~~~~~~~~l~~~~~ 141 (143)
T 3u5c_M 100 WAGLGKIDREGNARKVVGASVVVVKNWGAETDELSMIMEHFS 141 (143)
T ss_dssp HSSCCCCSSSSCCSCCCCCSCEEESCCCCCSHHHHHHHHHHH
T ss_pred HhCcCccccCCCccccceeEEEEEcccchhhHHHHHHHHHHh
Confidence 9995 333 44444544 556799999998765
No 21
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=99.86 E-value=4.5e-22 Score=144.18 Aligned_cols=100 Identities=14% Similarity=0.198 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEE-EeCCHHHHHHHhCCCcc
Q psy1295 29 TKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYV-FVRSKQALGRACGVSRP 107 (137)
Q Consensus 29 ~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i-~~~tk~eLG~a~G~~~~ 107 (137)
++++++|++|+++|+++.|.++|+++|++|++++||+|+|++|+ ++.+++.+|..+++|+. +++|+.+||+|||++++
T Consensus 13 ~~i~~~L~lA~kaGklv~G~~~v~kaIr~gkakLVIiA~Das~~-~~~ki~~~~~~~~~~V~~~~~sk~eLG~A~Gk~~~ 91 (125)
T 3vi6_A 13 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPAL-RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYR 91 (125)
T ss_dssp SCSHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEECTTSCHH-HHHHHHHHHHHTTCEEEECSSCHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHhCCeeeCHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHhCCCcEEEcCCHHHHHHHhCCccc
Confidence 56899999999999999999999999999999999999999996 99999999988888765 58999999999999998
Q ss_pred eEEEEEEeCC-CCChHHHHHHHH
Q psy1295 108 IIACSVTVDE-GSQLKPQIQAIQ 129 (137)
Q Consensus 108 v~~~ai~~~~-~s~~~~~i~e~~ 129 (137)
+++++|.+.+ .+.+.+++++.-
T Consensus 92 v~~vaI~D~G~a~~l~~~~~~~~ 114 (125)
T 3vi6_A 92 VCTLAIIDPGDSDIIRSMPEQTG 114 (125)
T ss_dssp CCEEEEEECTTCCCC--------
T ss_pred EEEEEEeCchhHHHHHHHHHhhc
Confidence 8656666655 456777776653
No 22
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=99.85 E-value=4.7e-21 Score=144.65 Aligned_cols=113 Identities=15% Similarity=0.172 Sum_probs=93.3
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcCCccccHHHHHHHH--HcCcccEEEEecCCChhhH------HHhHHHHhHhcCCCEE
Q psy1295 19 AYPLADTALTTKILSLVQQALNYKQLRKGANEATKTL--NRGLSEFIVLAADAEPLEI------VLHLPLLCEDKNVPYV 90 (137)
Q Consensus 19 ~~p~a~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI--~k~kaklViiA~D~~~~~~------~~~i~~lc~~~~IP~i 90 (137)
..|| ++++++++++|+.|+.+++++.|.++++|+| ++|++++||||.|++++.. ..+++.+|++++|||+
T Consensus 13 ~~~m--~~l~~al~evLk~A~~~~~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i 90 (165)
T 2kg4_A 13 TERM--DKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINIL 90 (165)
T ss_dssp CCCH--HHHHHHHHHHHHHHHHHTCEEECGGGHHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred hhhH--HHHHHHHHHHHHHHHHcCCeeecHHHHHHHHhcCCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEE
Confidence 5566 7999999999999999999999999999999 9999999999999974334 4556699999999999
Q ss_pred EeCCHHHHHHHhCC--------------CcceEEEEEEeCCC-C---ChHHHHHHHHHHHH
Q psy1295 91 FVRSKQALGRACGV--------------SRPIIACSVTVDEG-S---QLKPQIQAIQQQIE 133 (137)
Q Consensus 91 ~~~tk~eLG~a~G~--------------~~~v~~~ai~~~~~-s---~~~~~i~e~~~~~~ 133 (137)
+++|+.+||+|||. ++.+++++|...+. + +..+.+.+++.+..
T Consensus 91 ~V~s~k~LG~a~Gi~~~~~~~~~d~~g~~r~~scv~V~~~g~~s~~~~a~~~l~~~~~e~r 151 (165)
T 2kg4_A 91 RVSNPGRLAELLLLETDAGPAASEGAEQPPDLHCVLVTNPHSSQWKDPALSQLICFCRESR 151 (165)
T ss_dssp EESCHHHHHHHHHHTTTCSSCCCCSSCCCSCSCEEEEECCSSCCCCCHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHCCcccccccccccCCCcccceEEEEeccccccccchHHHHHHHHHHHhh
Confidence 99999999999996 25566666665443 3 55666666666554
No 23
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=99.83 E-value=3.7e-21 Score=137.41 Aligned_cols=86 Identities=24% Similarity=0.484 Sum_probs=72.2
Q ss_pred HcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhCCCcceEEEEEEeCCC-
Q psy1295 40 NYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIIACSVTVDEG- 118 (137)
Q Consensus 40 ~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G~~~~v~~~ai~~~~~- 118 (137)
+...|..|.++|+++|++|++++||||+|++|.++..+++.+|++++|||++++|+.+||++||+++.++++.+..+.+
T Consensus 22 ~~~~l~~G~~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG~a~G~k~~a~vai~d~~~ed 101 (113)
T 3jyw_G 22 KPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKTSAVAALTEVRAED 101 (113)
T ss_dssp SSSCEEESHHHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTTHHHHCSSSCCSEEEECSCSST
T ss_pred CCchhhchHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHCCCCcEEEEEEeCCHHh
Confidence 4456899999999999999999999999999977899999999999999999999999999999998655444444433
Q ss_pred -CChHHHH
Q psy1295 119 -SQLKPQI 125 (137)
Q Consensus 119 -s~~~~~i 125 (137)
+.+..++
T Consensus 102 ~~~l~~l~ 109 (113)
T 3jyw_G 102 EAALAKLV 109 (113)
T ss_dssp TTTTHHHH
T ss_pred HHHHHHHH
Confidence 2444444
No 24
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=99.80 E-value=5.1e-19 Score=140.98 Aligned_cols=113 Identities=23% Similarity=0.423 Sum_probs=84.3
Q ss_pred ccCCCCChHHHHHHHHH-HHHHHHc-------CCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCE
Q psy1295 18 KAYPLADTALTTKILSL-VQQALNY-------KQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPY 89 (137)
Q Consensus 18 ~~~p~a~~~~~~kl~~l-L~~A~~a-------g~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~ 89 (137)
.|+|.+.++-.++++.- -+.|... -.|..|.++|+++|++|+++|||||+||+|.+++.+++.+|++++|||
T Consensus 91 kyrpetk~ekk~rl~~~a~~ka~gk~~~~k~p~~lk~GvneVtKaIekgKAqLVVIA~DvdPielv~~LPaLCee~~VPY 170 (255)
T 4a17_F 91 SYAPEKPAEKKQRLVAQAEAKKDGKQVETKKPIVLKYGLNHITTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVPF 170 (255)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHTTCCCCCCCCCCEEECHHHHHHHHHTSCCSEEEEESCCSSTHHHHHHHHHHHHTTCCE
T ss_pred hcCccchHHHHHHHHHHHHHHhcCCCCCCCCCceeecchHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHcCCCE
Confidence 57777777666666542 2222221 246789999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHhCCCcceEEEEEEeCCCCChHHHHHHHHHHH
Q psy1295 90 VFVRSKQALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQI 132 (137)
Q Consensus 90 i~~~tk~eLG~a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~ 132 (137)
|+++++.+||+++|+++.++++.+.++ ++-++.++++.+.|
T Consensus 171 ~~V~sK~~LG~avGrKt~s~Vaitdv~--~EDk~al~kLve~i 211 (255)
T 4a17_F 171 AFVKGKAALGKLVNKKTATAVALTEVR--NEDKAKLQQFSELF 211 (255)
T ss_dssp EEESCHHHHHHHHTSSCCSEEEECCCC--HHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHhCCCcceEEEeeccC--HHHHHHHHHHHHHH
Confidence 999999999999999975533333333 33334444444443
No 25
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.79 E-value=5.4e-20 Score=147.68 Aligned_cols=100 Identities=25% Similarity=0.443 Sum_probs=76.0
Q ss_pred CCcccCCCCChHHHHHHHHHHHHH---------HHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhc
Q psy1295 15 VNPKAYPLADTALTTKILSLVQQA---------LNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDK 85 (137)
Q Consensus 15 ~~~~~~p~a~~~~~~kl~~lL~~A---------~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~ 85 (137)
+.-.|+|...++-..+|+..-... .+.++|+.|.++|+++|++|+++|||||+||+|.++..+++.+|+++
T Consensus 98 l~~kyrpe~k~ekk~rl~~~a~~~a~~~~~~~~k~~~~L~~G~keV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~ 177 (266)
T 2zkr_f 98 LAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKM 177 (266)
T ss_dssp ------CHHHHHHHHHHHHTTSSTTTCCSCCSSSSCCCCCBSHHHHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHH
T ss_pred HHhhcCcccHHHHHHHHHHHHHHHhcCCCCCcCCCCCeeeeChHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhc
Confidence 445677766555555544321111 24578999999999999999999999999999987999999999999
Q ss_pred CCCEEEeCCHHHHHHHhCCCcceEEEEEEe
Q psy1295 86 NVPYVFVRSKQALGRACGVSRPIIACSVTV 115 (137)
Q Consensus 86 ~IP~i~~~tk~eLG~a~G~~~~v~~~ai~~ 115 (137)
+|||++++|+.+||+|||+++.+ +++|.+
T Consensus 178 ~VPyi~v~sk~eLG~A~Gkk~~s-~VAItD 206 (266)
T 2zkr_f 178 GVPYCIIKGKARLGHLVHRKTCT-TVAFTQ 206 (266)
T ss_dssp TCCEEEESCHHHHHHHHTSSCCS-EEEETT
T ss_pred CCCEEEECCHHHHHHHhCCCCce-EEEEee
Confidence 99999999999999999999654 445543
No 26
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=99.79 E-value=5.9e-19 Score=140.86 Aligned_cols=107 Identities=21% Similarity=0.358 Sum_probs=82.4
Q ss_pred CCCCCcccCCCCChHHHHHHHHHH-HHHHH---------cCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHH
Q psy1295 12 EPAVNPKAYPLADTALTTKILSLV-QQALN---------YKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLL 81 (137)
Q Consensus 12 ~~~~~~~~~p~a~~~~~~kl~~lL-~~A~~---------ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~l 81 (137)
..-+.-.|+|.+.++-.++|+.-- +.|.. ...|..|.++|+++|++|+++|||||+||+|.++..+++.+
T Consensus 90 l~kl~~kyrpetk~ekk~rl~~~a~~~a~gk~~~~~~k~p~~lk~G~keV~KaIekgKAkLVVIA~DadP~eivk~LpaL 169 (256)
T 3izc_H 90 TFKLFNKYRPETAAEKKERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPAL 169 (256)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHTCCCCSSCSSCCCSCCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhccHHHHHHHHHhCcceEEEEeCCCChHHHHHHHHHH
Confidence 344566788887776666655321 21211 12367899999999999999999999999998788999999
Q ss_pred hHhcCCCEEEeCCHHHHHHHhCCCcceEEEEEEeCCC
Q psy1295 82 CEDKNVPYVFVRSKQALGRACGVSRPIIACSVTVDEG 118 (137)
Q Consensus 82 c~~~~IP~i~~~tk~eLG~a~G~~~~v~~~ai~~~~~ 118 (137)
|++++|||++++|+.+||++||+++.++++.++.+.+
T Consensus 170 C~k~gVPy~~V~sK~eLG~A~Gkk~~s~VAItD~g~e 206 (256)
T 3izc_H 170 CKKMGVPYAIVKGKARLGTLVNQKTSAVAALTEVRAE 206 (256)
T ss_dssp HHHHTCCEEEESCHHHHHHHTTCSSCCSEEEESSCCS
T ss_pred HHhcCCCEEEECCHHHHHHHhCCCCcEEEEeecCChh
Confidence 9999999999999999999999996554433433433
No 27
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=99.77 E-value=2.1e-18 Score=137.33 Aligned_cols=115 Identities=26% Similarity=0.436 Sum_probs=90.9
Q ss_pred CCCCCCcccCCCCChHHHHHHHHHHHHHHH--c---------CCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHH
Q psy1295 11 EEPAVNPKAYPLADTALTTKILSLVQQALN--Y---------KQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLP 79 (137)
Q Consensus 11 ~~~~~~~~~~p~a~~~~~~kl~~lL~~A~~--a---------g~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~ 79 (137)
...-+.-.|+|.+.++-.++|+. .|.+ + -.+..|.++|+++|++++++|||||+|++|.++..+++
T Consensus 87 ql~kl~~KYrPEtk~ekk~rL~~---~a~~ka~gk~~~~krp~~lk~GvneVTklVE~kKAqLVVIA~DVdPiElV~fLP 163 (258)
T 3iz5_H 87 NLFKMLLKYRPEDKAAKKERLLK---RAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLP 163 (258)
T ss_dssp CCCCCCCCCCCTHHHHHHHHHHH---HHHTTCCCCSSSSCCCCCEEESHHHHHHHHHTTCEEEEEEESCCSSTHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHH---HHHHHhcCCCCCCCCCceeecccHHHHHHHHcCcceEEEEeCCCChHHHHhHHH
Confidence 34456668899877776666554 3332 1 24667999999999999999999999999999999999
Q ss_pred HHhHhcCCCEEEeCCHHHHHHHhCCCcceEEEEEEeCCCC--ChHHHHHHH
Q psy1295 80 LLCEDKNVPYVFVRSKQALGRACGVSRPIIACSVTVDEGS--QLKPQIQAI 128 (137)
Q Consensus 80 ~lc~~~~IP~i~~~tk~eLG~a~G~~~~v~~~ai~~~~~s--~~~~~i~e~ 128 (137)
.||+++|||||++.++.+||+++|+++.++++.+.++.++ .+..+++.+
T Consensus 164 aLC~k~gVPY~iVk~KarLG~~vgrKtct~Va~t~v~~eDk~aLakLveai 214 (258)
T 3iz5_H 164 ALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAI 214 (258)
T ss_dssp HHHTTTTCCEEEESCHHHHHHHTTCSSCCSEEEEESCCSCCHHHHHHHHHH
T ss_pred HHHHhcCCCeEEECCHHHHHHHhCCccceEEEEEecCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986666666666543 344444443
No 28
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=99.65 E-value=1.5e-15 Score=112.28 Aligned_cols=108 Identities=20% Similarity=0.213 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcC--cccEEEEecCCCh------hhHHHhHHHHhHhcCCCEEEeCCHHH
Q psy1295 26 ALTTKILSLVQQALNYKQLRKGANEATKTLNRG--LSEFIVLAADAEP------LEIVLHLPLLCEDKNVPYVFVRSKQA 97 (137)
Q Consensus 26 ~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~--kaklViiA~D~~~------~~~~~~i~~lc~~~~IP~i~~~tk~e 97 (137)
++++++.++|+.|..++.|+.|.+++.|+|.++ ++.|+|+|.||+. ....+-+.++|.+|+||++.+.+.++
T Consensus 8 ~v~~ALqeVLk~Al~~dgL~~Gl~EaaKaLdk~p~~a~lCvLA~dcd~e~D~a~~~y~kLveAlC~E~~I~lIkVdd~kk 87 (146)
T 3cg6_A 8 GAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFCVLAADEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQR 87 (146)
T ss_dssp CHHHHHHHHHHHHHHHTCEEESHHHHHHHHHHCGGGEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCEEEEECCHHH
T ss_pred CHHHHHHHHHHHHHHhCCccccHHHHHHHHhcCCCeEEEEEecCCCccccchhHHHHHHHHHHHHhhcCCCeEEeCchhH
Confidence 789999999999999999999999999999997 9999999999982 35889999999999999999999999
Q ss_pred HHHHhCC------CcceEEEEEEeC-CC---CChHHHHHHHHHHHH
Q psy1295 98 LGRACGV------SRPIIACSVTVD-EG---SQLKPQIQAIQQQIE 133 (137)
Q Consensus 98 LG~a~G~------~~~v~~~ai~~~-~~---s~~~~~i~e~~~~~~ 133 (137)
||+|+|+ ++..++++|... .+ ++..+.+.+++++.-
T Consensus 88 Lgew~Gk~d~~g~pr~~sCvvV~d~g~e~~~s~al~~l~~y~~e~~ 133 (146)
T 3cg6_A 88 LAAIVGSDEEGGAPGDLHCILISNPNEDTWKDPALEKLSLFCEESR 133 (146)
T ss_dssp HHHHC----------CCSEEEEECCC---CCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCcCCCCCCCCCEEEEEecCCcccccCHHHHHHHHHHHHhc
Confidence 9999995 345556666543 34 677788888887654
No 29
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=99.52 E-value=2.2e-13 Score=102.37 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcC--cccEEEEecCCC-hhh-----HHHhHHHHhHhcCCCEEEeCCHHH
Q psy1295 26 ALTTKILSLVQQALNYKQLRKGANEATKTLNRG--LSEFIVLAADAE-PLE-----IVLHLPLLCEDKNVPYVFVRSKQA 97 (137)
Q Consensus 26 ~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~--kaklViiA~D~~-~~~-----~~~~i~~lc~~~~IP~i~~~tk~e 97 (137)
.+.+++.++|+.|..++.|+.|..++.|+|.+. ++.|+++|.|++ +.| ..+-+.++|.+++||++.+.+.++
T Consensus 29 ~v~~ALqeVLk~Al~~dgL~~Gl~EaaKaLd~~p~~a~LCvLA~dc~~e~D~alqmy~kLVeAlC~E~~I~LIkV~d~kk 108 (167)
T 3ffm_A 29 GAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFCVLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQR 108 (167)
T ss_dssp HHHHHHHHHHHHHHHTTCEEESHHHHHHHHHHCGGGEEEEEEECCGGGTTCHHHHHHHHHHHHHHHHTTCEEEEESCHHH
T ss_pred hHHHHHHHHHHHHHHhCCccccHHHHHHHhccCCCeEEEEEEeCCCCcccchhHHHHHHHHHHHHhhcCCCeEEeCCcch
Confidence 367999999999999999999999999999884 999999999985 222 578889999999999999999999
Q ss_pred HHHHhCCC------cceEEEEEEeCCCC----ChHHHHHHHHHHHH
Q psy1295 98 LGRACGVS------RPIIACSVTVDEGS----QLKPQIQAIQQQIE 133 (137)
Q Consensus 98 LG~a~G~~------~~v~~~ai~~~~~s----~~~~~i~e~~~~~~ 133 (137)
||+|+|+. +..++++|.....+ ...+.+-.++.+..
T Consensus 109 Lgew~G~~~~~~k~~~csCVlVtd~ge~s~k~~AL~~l~~fCeesr 154 (167)
T 3ffm_A 109 LAAIVGAGEEAGAPGDLHCILISNPNEDAWKDPALEKLSLFCEESR 154 (167)
T ss_dssp HHHHHTTSCCSSSCSCCSEEEEECSSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHhCcCCCCCCCCccEEEEECCCCcccccCHHHHHHHHHHHHhc
Confidence 99999953 35667777665543 45667777777654
No 30
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=95.60 E-value=0.034 Score=41.21 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=54.5
Q ss_pred HHcCCccccHHHHHHHHHcCcccEEEEecCCCh--------------------------------------------hhH
Q psy1295 39 LNYKQLRKGANEATKTLNRGLSEFIVLAADAEP--------------------------------------------LEI 74 (137)
Q Consensus 39 ~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~--------------------------------------------~~~ 74 (137)
...|+.+.|.++|.+|++.|.+..++|..|... .++
T Consensus 42 ~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ 121 (166)
T 3ir9_A 42 ADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVTDVTDI 121 (166)
T ss_dssp TCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCEEEEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEEEEEEEEH
T ss_pred hCCCcEEEcHHHHHHHHHhCCceEEEEecCccceEEEEECCCCCceeEEEeecChhhcccccccccccCccchhhhHHHH
Confidence 457999999999999999999999999988532 136
Q ss_pred HHhHHHHhHhcCCCEEEeCCHHHHHHHh
Q psy1295 75 VLHLPLLCEDKNVPYVFVRSKQALGRAC 102 (137)
Q Consensus 75 ~~~i~~lc~~~~IP~i~~~tk~eLG~a~ 102 (137)
...+...++++|-.+.++.++.+-|.-+
T Consensus 122 ve~L~e~~~~~G~~v~ivs~~~eeG~ql 149 (166)
T 3ir9_A 122 VDEFSELADKSNAKVVFVSTDFDEGSQL 149 (166)
T ss_dssp HHHHHHHHHHTTCEEEEECSCSHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEECCCChhHHHH
Confidence 7789999999999999999988877755
No 31
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=94.80 E-value=0.054 Score=38.29 Aligned_cols=63 Identities=10% Similarity=0.021 Sum_probs=51.8
Q ss_pred HHcCCccccHHHHHHHHHcCcccEEEEecCC----Ch---hhHHHhHHHHhHhcCCCEEEeCCHHHHHHHh
Q psy1295 39 LNYKQLRKGANEATKTLNRGLSEFIVLAADA----EP---LEIVLHLPLLCEDKNVPYVFVRSKQALGRAC 102 (137)
Q Consensus 39 ~~ag~lv~G~~~v~kaI~k~kaklViiA~D~----~~---~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~ 102 (137)
...|+.+.|..+|.+|++.|.+..++|..|. ++ .++.+ +...++++|-.+.++.+..+-|.-+
T Consensus 34 ~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~e-l~e~~~~~G~~V~ivs~~~~~G~qL 103 (124)
T 1x52_A 34 HEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVR-LVDSVKENAGTVRIFSSLHVSGEQL 103 (124)
T ss_dssp SCGGGEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHH-HHHHHHHTTCEEEEECSSSHHHHHH
T ss_pred cCCCcEEECHHHHHHHHHcCCccEEEechhhhcCCChHHHHHHHH-HHHHHHHcCCEEEEECCCCccHHHH
Confidence 4458999999999999999999999999873 11 22444 7888999999999999888878766
No 32
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=93.28 E-value=0.99 Score=35.62 Aligned_cols=77 Identities=10% Similarity=0.100 Sum_probs=51.7
Q ss_pred ccccHHHHHHHHHcC-cccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhCCCcceEEEEEEeCC-CCCh
Q psy1295 44 LRKGANEATKTLNRG-LSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIIACSVTVDE-GSQL 121 (137)
Q Consensus 44 lv~G~~~v~kaI~k~-kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G~~~~v~~~ai~~~~-~s~~ 121 (137)
++.|.+.|..+++.+ ...-+++..+.... ..+...|+..++|+..+ +++.|.+..+...+=.++++.... ...+
T Consensus 36 lveG~~~V~eaL~~~~~i~~l~~~~~~~~~---~~l~~~~~~~~~~v~~v-~~~~l~~ls~~~~~qGv~a~~~~~~~~~l 111 (277)
T 3nk6_A 36 LIEDTEPLMECIRAGVQFIEVYGSSGTPLD---PALLDLCRQREIPVRLI-DVSIVNQLFKAERKAKVFGIARVPRPARL 111 (277)
T ss_dssp EEESHHHHHHHHHTTCCEEEEEEETTSCCC---HHHHHHHHHTTCCEEEE-CHHHHTTCC-----CCEEEEEECCCCCCH
T ss_pred EEEeHHHHHHHHhCCCCeEEEEEeCCccCc---HHHHHHHHhcCCcEEEE-CHHHHHHhhCCCCCCeEEEEEecCCCCCH
Confidence 889999999999987 67778888887553 45677788899998766 678888888765333334444433 3344
Q ss_pred HHH
Q psy1295 122 KPQ 124 (137)
Q Consensus 122 ~~~ 124 (137)
.++
T Consensus 112 ~~~ 114 (277)
T 3nk6_A 112 ADI 114 (277)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 33
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=92.90 E-value=0.17 Score=41.36 Aligned_cols=58 Identities=10% Similarity=0.082 Sum_probs=50.8
Q ss_pred HHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHH
Q psy1295 39 LNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALG 99 (137)
Q Consensus 39 ~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG 99 (137)
+..|+.+.|..+|.+|++.|.+..++|..| . +....+...+..+|-.+.++.+..+-|
T Consensus 295 ~~~g~a~yG~~eV~~Al~~GaVetLlv~d~--r-d~~~~L~e~a~~~G~~V~ivs~~~~~g 352 (373)
T 3agk_A 295 KGTGMIVYGEKDVEAALEMGAVKTLLIHES--R-EDLEEWVEKAKSSGAQVIVVPESLAEA 352 (373)
T ss_dssp TTCCCEEESHHHHHHHHHTTCEEEEEEETT--C-TTHHHHHHHHTTTTCEEEEECTTSTTH
T ss_pred cCCCcEeeCHHHHHHHHHhCCccEEEEeCC--h-hHHHHHHHHHHHcCCEEEEECCCCccH
Confidence 346899999999999999999999999998 3 478889999999999999998875555
No 34
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=92.66 E-value=0.099 Score=42.92 Aligned_cols=64 Identities=20% Similarity=0.120 Sum_probs=51.9
Q ss_pred HHcCCccccHHHHHHHHHcCcccEEEEecCCCh---hhHHHhHHHHhHhcCCCEEEeCCHHHHHHHh
Q psy1295 39 LNYKQLRKGANEATKTLNRGLSEFIVLAADAEP---LEIVLHLPLLCEDKNVPYVFVRSKQALGRAC 102 (137)
Q Consensus 39 ~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~---~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~ 102 (137)
...|+.+.|.++|.+|++.|.+.-++|..|... ++....+...++++|-.+..+.+..+-|.-+
T Consensus 276 ~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~~~~~~~~l~e~~~~~G~~v~ivs~~~e~G~qL 342 (357)
T 3j15_A 276 RNNGLVAYGLKEVEEAVNYGAVETLLVLDELLKGELREKVEELMDAVRYSRGEVVVVSSEHEGGEKL 342 (357)
T ss_dssp HSTTTEEESTHHHHHHHHHTCEEEEEEEHHHHTSSCCHHHHHHHHHHHHTTCEEEEECSSSTTHHHH
T ss_pred cCCCcEEeCHHHHHHHHHhCCCcEEEEecccccccchHHHHHHHHHHHHcCCEEEEECCCCCcchhh
Confidence 345899999999999999999999999877532 3467889999999999999888765555443
No 35
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=92.24 E-value=0.22 Score=40.96 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhh----HHHhHHHHhHhcCCCEEEeCCHHHHHHHh
Q psy1295 28 TTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLE----IVLHLPLLCEDKNVPYVFVRSKQALGRAC 102 (137)
Q Consensus 28 ~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~----~~~~i~~lc~~~~IP~i~~~tk~eLG~a~ 102 (137)
.+++++.|. +.|+.+.|.++|.+|++.|.+.-++|..|....+ ....+...++++|-.+.++.+..+-|+-+
T Consensus 253 le~f~~~l~---~d~~a~YG~~eV~~Ale~GAVetLLIsd~l~r~~r~~~~~~~l~e~~~~~G~~v~i~S~~~e~G~qL 328 (352)
T 3oby_A 253 IDRLLEGIA---KGERVAYGLDEVREAHNYRAIEVLLVADEFLLEEREKWDVDGLLREVEESGGKVVIMSTEFEPGKRL 328 (352)
T ss_dssp HHHHHHHHH---HTCSEEESHHHHHHHHTTTCEEEEEEEHHHHHHHTTTSCHHHHHHHHHHTTCEEEEECTTSHHHHHH
T ss_pred HHHHHHHHh---cCCcEEECHHHHHHHHHcCCceEEEEeccchhcccchHHHHHHHHHHHHcCCEEEEEcCCCcchhHH
Confidence 344444443 3399999999999999999999999997753321 35678889999999999999886666655
No 36
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=92.11 E-value=0.43 Score=40.31 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=53.2
Q ss_pred HHcCCccccHHHHHHHHHcCcccEEEEecCCC----------------------h-----------------------hh
Q psy1295 39 LNYKQLRKGANEATKTLNRGLSEFIVLAADAE----------------------P-----------------------LE 73 (137)
Q Consensus 39 ~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~----------------------~-----------------------~~ 73 (137)
+..|+.+.|.++|.+|++.|.+.-++|..+.. + .+
T Consensus 301 ~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~ 380 (441)
T 3e20_C 301 LDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSML 380 (441)
T ss_dssp TTCSCCCCSHHHHHHHHHSSCCSEEEEETTCCCEEC----------CCEECSCTTTCCC-----------------CCEE
T ss_pred cCCCcEEECHHHHHHHHHhCCccEEEEecccccceeEEECCCCceEEEecCccccccccccccccCcccCccceecchhh
Confidence 34689999999999999999999999987763 0 02
Q ss_pred HHHhHHHHhHhcCCCEEEeCCHHHHHHHh
Q psy1295 74 IVLHLPLLCEDKNVPYVFVRSKQALGRAC 102 (137)
Q Consensus 74 ~~~~i~~lc~~~~IP~i~~~tk~eLG~a~ 102 (137)
+.+.+...++++|..+.++.++.+-|.-+
T Consensus 381 ~ve~l~e~a~~~G~~v~~vs~~~~eG~ql 409 (441)
T 3e20_C 381 LSEWLAEHYKDYGANLEFVSDRSQEGMQF 409 (441)
T ss_dssp HHHHHHHHGGGGSCCEEEECTTSHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCCCHHHHHH
Confidence 45568889999999999999988888765
No 37
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=91.78 E-value=0.24 Score=40.58 Aligned_cols=64 Identities=13% Similarity=0.067 Sum_probs=52.5
Q ss_pred HHcCCccccHHHHHHHHHcCcccEEEEecCCC----h--hhHHHhHHHHhHhcCCCEEEeCCHHHHHHHh
Q psy1295 39 LNYKQLRKGANEATKTLNRGLSEFIVLAADAE----P--LEIVLHLPLLCEDKNVPYVFVRSKQALGRAC 102 (137)
Q Consensus 39 ~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~----~--~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~ 102 (137)
+..|+.+.|.++|.+|++.|.+.-++|..|.. + ++....+...++++|-.+..+.+..+-|.-+
T Consensus 268 ~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l~r~~d~~~r~~~~~L~~~a~~~Gg~V~ivs~~~~~G~qL 337 (358)
T 3agj_B 268 KSRDTVAYTPGEVLAVARMGAVDTVLLVDTLLHSPDDAVREAVDEALRLVESMGGRVIIIPGDSPAGERL 337 (358)
T ss_dssp HCGGGEEESHHHHHHHHHHTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHHH
T ss_pred cCCCcEEECHHHHHHHHHhCCceEEEEecccccCCChhhHHHHHHHHHHHHHcCCEEEEECCCCcchhhh
Confidence 44589999999999999999999999987632 1 2236678888899999999999888888655
No 38
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=91.58 E-value=0.29 Score=40.32 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=51.6
Q ss_pred cCCccccHHHHHHHHHcCcccEEEEecCCCh-----hhHHHhHHHHhHhcCCCEEEeCCHHHHHHHh
Q psy1295 41 YKQLRKGANEATKTLNRGLSEFIVLAADAEP-----LEIVLHLPLLCEDKNVPYVFVRSKQALGRAC 102 (137)
Q Consensus 41 ag~lv~G~~~v~kaI~k~kaklViiA~D~~~-----~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~ 102 (137)
.|+.+.|.++|.+|++.|.+.-+++..|... ++....+...++++|-.+.++.+..+-|.-+
T Consensus 283 ~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~qL 349 (364)
T 3obw_A 283 PELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVILVPKESPIYFEL 349 (364)
T ss_dssp CSSEEESHHHHHHHHHHTCEEEEEEEGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEECTTSTTHHHH
T ss_pred CCcEEECHHHHHHHHHhCCCcEEEEeccCcccccchHHHHHHHHHHHHhcCCEEEEECCCCCCchhh
Confidence 5899999999999999999999999988632 2357788899999999999988876655544
No 39
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=91.52 E-value=0.44 Score=38.93 Aligned_cols=60 Identities=8% Similarity=0.050 Sum_probs=52.0
Q ss_pred CCccccHHHHHHHHHcCcccEEEEecCCC-hhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHh
Q psy1295 42 KQLRKGANEATKTLNRGLSEFIVLAADAE-PLEIVLHLPLLCEDKNVPYVFVRSKQALGRAC 102 (137)
Q Consensus 42 g~lv~G~~~v~kaI~k~kaklViiA~D~~-~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~ 102 (137)
++.+.|.++|.+|++.|.+..+++..|.. ..+ ...+...++++|-.+.++.+..+-|+-+
T Consensus 264 d~~~YG~~eV~~Ale~GAVetLlV~d~l~rr~~-~~~L~e~~~~~G~~V~ivs~~~e~G~qL 324 (347)
T 2qi2_A 264 DMGVYGRDQTESALQMGALSDLIITDEMFRTED-GRRSLSIAQTVGTRIHIVSVSNDPGQIV 324 (347)
T ss_dssp TCEEESHHHHHHHHHTTCEEEEEEEHHHHTSHH-HHHHHHHHHHHTCEEEEECTTSHHHHHH
T ss_pred CCEEEcHHHHHHHHHcCCCeEEEEecccccchh-HHHHHHHHHHcCCEEEEECCCCcchHHH
Confidence 39999999999999999999999999864 323 7788899999999999999887777666
No 40
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=91.22 E-value=0.46 Score=34.79 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=41.5
Q ss_pred cHHHHHHHHHcCcccEEEEecC---CCh-hhHHHhHHHHhHhcCCCEEEe-CCHHHHHH
Q psy1295 47 GANEATKTLNRGLSEFIVLAAD---AEP-LEIVLHLPLLCEDKNVPYVFV-RSKQALGR 100 (137)
Q Consensus 47 G~~~v~kaI~k~kaklViiA~D---~~~-~~~~~~i~~lc~~~~IP~i~~-~tk~eLG~ 100 (137)
|..++...|++|++.+||--.| ..| ..-...|.+.|-.++|||... .+-..+=+
T Consensus 70 G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~ 128 (152)
T 1b93_A 70 GDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNVATADFIIQ 128 (152)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESSHHHHHHHHT
T ss_pred CCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 7789999999999999999888 344 224678999999999999754 33344433
No 41
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=90.50 E-value=0.61 Score=38.68 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=50.0
Q ss_pred HHcCCccccHHHHHHHHHcCcccEEEEecCCC----hh---hHHHhHHHHhHhcCCCEEEeCCHHHHHHHh
Q psy1295 39 LNYKQLRKGANEATKTLNRGLSEFIVLAADAE----PL---EIVLHLPLLCEDKNVPYVFVRSKQALGRAC 102 (137)
Q Consensus 39 ~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~----~~---~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~ 102 (137)
...|+.+.|.++|.+|++.|.+.-++|..+.- +. ++. .+...++++|-.+..+.+..+-|.-+
T Consensus 287 ~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~r~~~~-~L~e~~~~~Gg~V~ivs~~~~~G~qL 356 (390)
T 3mca_B 287 EDDRKAWYGPNHVLKAFELGAIGELLISDSLFRSSDIATRKKWV-SLVEGVKEINCPVYIFSSLHESGKQL 356 (390)
T ss_dssp HCTTSEEESHHHHHHHHHTTCBSSCEEEETTCCCSCHHHHHHHH-HHHHHHHHTTCCEEEECTTSHHHHHH
T ss_pred cCCCcEEECHHHHHHHHHcCCCeEEEEecccccCCChhHHHHHH-HHHHHHHhcCCEEEEECCCCCchhhh
Confidence 44689999999999999999999999997642 21 122 57777999999999998887777655
No 42
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=90.45 E-value=1.1 Score=34.75 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=47.9
Q ss_pred CccccHHHHHHHHHcC--cccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhCCCc
Q psy1295 43 QLRKGANEATKTLNRG--LSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACGVSR 106 (137)
Q Consensus 43 ~lv~G~~~v~kaI~k~--kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G~~~ 106 (137)
.++.|.+.|..+++.+ ...-+++..+.... -...+..+|+..++|+..+ +++.|.+..+...
T Consensus 13 ~~veG~~~V~eal~~~~~~i~~l~~~~~~~~~-~~~~l~~~~~~~~i~v~~v-~~~~l~~ls~~~~ 76 (253)
T 1gz0_A 13 EMIYGIHAVQALLERAPERFQEVFILKGREDK-RLLPLIHALESQGVVIQLA-NRQYLDEKSDGAV 76 (253)
T ss_dssp EEEESHHHHHHHHHSCGGGEEEEEEESSCCCT-TTHHHHHHHHHHTCEEEEE-CSHHHHHTTTSCC
T ss_pred EEEEEHHHHHHHHhcCCCCeEEEEEECCccch-hHHHHHHHHHHCCCcEEEe-CHHHHHHHhCCCC
Confidence 3889999999999987 57888888876543 2456777788899998665 4578888887653
No 43
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=90.00 E-value=0.93 Score=37.82 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=50.6
Q ss_pred HHcCCccccHHHHHHHHHcCcccEEEEecCCC--------hh-----------------------------------hHH
Q psy1295 39 LNYKQLRKGANEATKTLNRGLSEFIVLAADAE--------PL-----------------------------------EIV 75 (137)
Q Consensus 39 ~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~--------~~-----------------------------------~~~ 75 (137)
+..|+.+.|..+|.+|++.|.+..++|..|.. +. ++.
T Consensus 296 ~d~g~a~yG~~eV~~Al~~GaVetLLv~d~l~~~r~~~r~~~~g~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~d~v 375 (437)
T 1dt9_A 296 QDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLL 375 (437)
T ss_dssp SSSCCEEESHHHHHHHHHSSCCSEEEEESCCCCBCCCC---------CCCBCTTCSSCCCCCC-----------CCCBHH
T ss_pred cCCCcEEecHHHHHHHHHhCCccEEEEecCcccceEEEEcCCCCceeeeeeccccccccccccCcccCccccccccccHH
Confidence 34589999999999999999999999988754 10 124
Q ss_pred HhHHHHhHhcCCCEEEeCCHHHHHHH
Q psy1295 76 LHLPLLCEDKNVPYVFVRSKQALGRA 101 (137)
Q Consensus 76 ~~i~~lc~~~~IP~i~~~tk~eLG~a 101 (137)
..+...++++|-.+.++.+..+-|.-
T Consensus 376 e~L~e~~~~~G~~V~ivs~~~e~G~q 401 (437)
T 1dt9_A 376 EWFANNYKKFGATLEIVTDKSQEGSQ 401 (437)
T ss_dssp HHHHHTCTTTTSCEEEECSSSHHHHH
T ss_pred HHHHHHHHHcCCEEEEECCCChhHHH
Confidence 44788899999999999988777754
No 44
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=89.69 E-value=0.96 Score=37.36 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=52.0
Q ss_pred HHcCCccccHHHHHHHHHcCcccEEEEecCCC----h--hhHHHhHHHHhHhcCCCEEEeCCHHHHHHHh
Q psy1295 39 LNYKQLRKGANEATKTLNRGLSEFIVLAADAE----P--LEIVLHLPLLCEDKNVPYVFVRSKQALGRAC 102 (137)
Q Consensus 39 ~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~----~--~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~ 102 (137)
+..|+.+.|..+|.+|++.|.+..++|..|.- + +.-...+...++++|-.+.++.+..+-|+-+
T Consensus 293 ~d~~~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~ivs~~~e~G~qL 362 (386)
T 2vgn_A 293 KDDDKAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLGEEL 362 (386)
T ss_dssp TTCSSEEESHHHHHHHHHTTCEEEEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECTTSHHHHHH
T ss_pred cCCCcEEeCHHHHHHHHHcCCcEEEEEechhhcCCCchhhhHHHHHHHHHHHcCCEEEEECCCCcchhhH
Confidence 44589999999999999999999999999841 2 1125677788899999999999887777665
No 45
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=88.24 E-value=0.58 Score=35.20 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=41.8
Q ss_pred cHHHHHHHHHcCcccEEEEecC---CCh-hhHHHhHHHHhHhcCCCEEEe-CCHHHHHHH
Q psy1295 47 GANEATKTLNRGLSEFIVLAAD---AEP-LEIVLHLPLLCEDKNVPYVFV-RSKQALGRA 101 (137)
Q Consensus 47 G~~~v~kaI~k~kaklViiA~D---~~~-~~~~~~i~~lc~~~~IP~i~~-~tk~eLG~a 101 (137)
|..++...|++|++.+||--.| ..| ..-...|.+.|-.++|||... .+-..+=++
T Consensus 86 G~pqI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~TnlatA~A~v~a 145 (178)
T 1vmd_A 86 GDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVAITRSTADFLISS 145 (178)
T ss_dssp HHHHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEESSHHHHHHHHHS
T ss_pred CCchHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHHH
Confidence 7789999999999999999888 333 112567999999999999864 344444444
No 46
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=88.15 E-value=0.45 Score=34.10 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=40.9
Q ss_pred ccHHHHHHHHHcCcccEEEEecC--C-Ch-hhHHHhHHHHhHhcCCCEEEeC-CHHHHHH
Q psy1295 46 KGANEATKTLNRGLSEFIVLAAD--A-EP-LEIVLHLPLLCEDKNVPYVFVR-SKQALGR 100 (137)
Q Consensus 46 ~G~~~v~kaI~k~kaklViiA~D--~-~~-~~~~~~i~~lc~~~~IP~i~~~-tk~eLG~ 100 (137)
-|..++...|++|++.+||--.| . .| ..-...|.+.|-.++|||.... +-+.+=+
T Consensus 61 eG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~ 120 (134)
T 2xw6_A 61 GGDQQMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLATNPMAAEALIP 120 (134)
T ss_dssp THHHHHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEECSHHHHHHHHH
T ss_pred CCcchHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHHHHcCCCeEcCHHHHHHHHH
Confidence 47789999999999999999888 2 22 1125679999999999998643 4343333
No 47
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=86.91 E-value=2.1 Score=33.67 Aligned_cols=64 Identities=14% Similarity=0.054 Sum_probs=44.9
Q ss_pred cCC-ccccHHHHHHHHHcC-cccEEEEecCCChhhHHHhHHHHhHhcC-CCEEEeCCHHHHHHHhCCCc
Q psy1295 41 YKQ-LRKGANEATKTLNRG-LSEFIVLAADAEPLEIVLHLPLLCEDKN-VPYVFVRSKQALGRACGVSR 106 (137)
Q Consensus 41 ag~-lv~G~~~v~kaI~k~-kaklViiA~D~~~~~~~~~i~~lc~~~~-IP~i~~~tk~eLG~a~G~~~ 106 (137)
.|. ++.|.+.|..+++.+ ...-+++.++.... ....+...++..+ +|+.. -+++.|.+..+...
T Consensus 26 ~g~f~veG~~~v~eal~~~~~i~~l~~~~~~~~~-~~~~l~~~~~~~~~~~v~~-v~~~~l~~ls~~~~ 92 (274)
T 1ipa_A 26 QRRFLIEGAREIERALQAGIELEQALVWEGGLNP-EEQQVYAALGRVGRLALLE-VSEAVLKKLSVRDN 92 (274)
T ss_dssp HTEEEEESHHHHHHHHHTTCCEEEEEEETTCCCH-HHHHHHHCC-----CEEEE-ECHHHHHHHCCSSS
T ss_pred cCeEEEEeHHHHHHHHhCCCCeEEEEEEcCcccc-hHHHHHHHHHhcCCccEEE-eCHHHHHHHhCCCC
Confidence 454 789999999999987 57888888887553 2455666777788 88744 56788999888654
No 48
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=86.47 E-value=1.1 Score=30.48 Aligned_cols=54 Identities=7% Similarity=-0.034 Sum_probs=43.0
Q ss_pred cccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHH
Q psy1295 45 RKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQAL 98 (137)
Q Consensus 45 v~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eL 98 (137)
+.|..+..+.+++.++..|++|-..........+...|..+++.+..+++-.++
T Consensus 51 V~g~~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~~~~ 104 (141)
T 3nkl_A 51 IYRPKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNLDDL 104 (141)
T ss_dssp EECGGGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCHHHH
T ss_pred EECHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCHHHH
Confidence 446667777888888999999975433347889999999999999999987764
No 49
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=85.60 E-value=3.8 Score=29.16 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=41.6
Q ss_pred HHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCC
Q psy1295 49 NEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRS 94 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~t 94 (137)
.++.+++++.....++|-++.+.. ....+..+|+++|+|+-.+.+
T Consensus 53 ~~~~~~l~~~~~~~l~ing~l~~~-~~~~YiklA~~~~i~fTiV~~ 97 (133)
T 2ohw_A 53 KEAEHELKNSHNVTLLINGELQYQ-SYSSYIQMASRYGVPFKIVSD 97 (133)
T ss_dssp HHHHHHHHTCSSEEEEEETTSCHH-HHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHhhCCCcEEEEcCCCCHH-HHHHHHHHHHHcCCCeEEecC
Confidence 567889999999999999999996 999999999999999998877
No 50
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=83.32 E-value=1.5 Score=31.11 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=34.5
Q ss_pred HHHHHHHHcCcccEEEEecCCC--hhhHHHhHHHHhHhcCCCEEEe
Q psy1295 49 NEATKTLNRGLSEFIVLAADAE--PLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~D~~--~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
.++...|++|++.+||--.|-. +..--..+.+.|-.++|||+.-
T Consensus 86 ~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 86 SSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp BCHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEECS
T ss_pred ccHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEcC
Confidence 4688889999999999988763 2223457889999999999754
No 51
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=69.11 E-value=27 Score=27.03 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=44.2
Q ss_pred cccccccCCCCCCCcccCCCCChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHh
Q psy1295 3 TFLYFQTNEEPAVNPKAYPLADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLC 82 (137)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~p~a~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc 82 (137)
.|+||-|+.-.+..+. ..+++.++..++++ ..+++..++.+++|.|.... --+..+-
T Consensus 48 ~~iy~~D~~~~PyG~~----s~~~i~~~~~~i~~----------------~ll~~~g~d~IviaCNTas~---~~l~~lr 104 (285)
T 2jfn_A 48 HYIYAFDNVAFPYGEK----SEAFIVERVVAIVT----------------AVQERYPLALAVVACNTAST---VSLPALR 104 (285)
T ss_dssp EEEEEECTTTCCTTTS----CHHHHHHHHHHHHH----------------HHHHHSCCSEEEECCHHHHH---HHHHHHH
T ss_pred CeEEeeccCCCCCccC----CHHHHHHHHHHHHH----------------HHHHhCCCCEEEEECccccH---HHHHHHH
Confidence 4778888876554332 34566666666544 33455679999999987542 1345666
Q ss_pred HhcCCCEEEeC
Q psy1295 83 EDKNVPYVFVR 93 (137)
Q Consensus 83 ~~~~IP~i~~~ 93 (137)
+..+||++-+.
T Consensus 105 ~~~~iPVigi~ 115 (285)
T 2jfn_A 105 EKFDFPVVGVV 115 (285)
T ss_dssp HHCSSCEECCC
T ss_pred HhCCCCEEehH
Confidence 67799998654
No 52
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=68.87 E-value=17 Score=24.28 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=32.4
Q ss_pred CcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe-CCH---HHHHHHhCCC
Q psy1295 58 GLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV-RSK---QALGRACGVS 105 (137)
Q Consensus 58 ~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~-~tk---~eLG~a~G~~ 105 (137)
.++.+|.|.-|-+.. ....+..+++++++++..+ ++. .++.+..|..
T Consensus 60 ~~~~vv~vs~d~~~d-~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~v~ 110 (164)
T 2ggt_A 60 PDLTPLFISIDPERD-TKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVY 110 (164)
T ss_dssp CCEEEEEEESCTTTC-CHHHHHHHHHTTCSSCEEEECCHHHHHHHHHTTTCC
T ss_pred CcEEEEEEEeCCCCC-CHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHhcCeE
Confidence 367888888886442 4567788889999887765 333 3577777764
No 53
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=67.83 E-value=29 Score=24.42 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=52.1
Q ss_pred HHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhC----CCcce-EEEEEEeCCCCChHH
Q psy1295 49 NEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACG----VSRPI-IACSVTVDEGSQLKP 123 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G----~~~~v-~~~ai~~~~~s~~~~ 123 (137)
++..+.|++.-++.|++-+|-++..-...+ .--++.||.+-.+.++++...-+. +-... .++.++..+..-+++
T Consensus 16 keivreikrqgvrvvllysdqdekrrrerl-eefekqgvdvrtvedkedfrenireiwerypqldvvvivttddkewikd 94 (162)
T 2l82_A 16 KEIVREIKRQGVRVVLLYSDQDEKRRRERL-EEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIVTTDDKEWIKD 94 (162)
T ss_dssp HHHHHHHHHTTCEEEEEECCSCHHHHHHHH-HHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEEECCCHHHHHH
T ss_pred HHHHHHHHhCCeEEEEEecCchHHHHHHHH-HHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEEecCcHHHHHH
Confidence 566777888889999999999987333444 445778999999999987764332 11111 123333343456677
Q ss_pred HHHHHH
Q psy1295 124 QIQAIQ 129 (137)
Q Consensus 124 ~i~e~~ 129 (137)
.|+|..
T Consensus 95 fieeak 100 (162)
T 2l82_A 95 FIEEAK 100 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 54
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=66.95 E-value=8.8 Score=26.40 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=36.7
Q ss_pred ccc-cHHHH-HHHHHc-CcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC-CHHHHHH
Q psy1295 44 LRK-GANEA-TKTLNR-GLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR-SKQALGR 100 (137)
Q Consensus 44 lv~-G~~~v-~kaI~k-~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~-tk~eLG~ 100 (137)
++. |.++- ..+.-+ .++..+|+.++..|. ..+..+|++++||++... +..+...
T Consensus 56 ~I~~G~r~~~~l~a~~~~~~~~iIlt~g~~~~---~~i~~~A~~~~ipvl~t~~~T~~~~~ 113 (139)
T 2ioj_A 56 LVTGGDRSDLLLTALEMPNVRCLILTGNLEPV---QLVLTKAEERGVPVILTGHDTLTAVS 113 (139)
T ss_dssp EEEETTCHHHHHHHTTCTTEEEEEEETTCCCC---HHHHHHHHHHTCCEEECSSCHHHHHH
T ss_pred EEEcCCHHHHHHHHHhCCCCcEEEEcCCCCCC---HHHHHHHHHCCCeEEEECCCHHHHHH
Confidence 445 66543 223333 569999999998876 456689999999999875 4444333
No 55
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=66.15 E-value=19 Score=28.00 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=44.5
Q ss_pred cCCChhhHHHhHHHHhHhcCCCEEEeC--CH----HHHHHHhCCCcceEEEEEEeCCCCChHHHHHHHHHHHHHhh
Q psy1295 67 ADAEPLEIVLHLPLLCEDKNVPYVFVR--SK----QALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIERLL 136 (137)
Q Consensus 67 ~D~~~~~~~~~i~~lc~~~~IP~i~~~--tk----~eLG~a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~~~~ 136 (137)
...+|. -...+..++++++|+++++. .. +.|.+..|.+ ++. ...-++.+.+.++...+.+.+-|
T Consensus 219 ~eps~~-~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~----v~~-ld~l~~~Y~~~m~~n~~~l~~aL 288 (291)
T 1pq4_A 219 QEPSAQ-ELKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAG----VEL-LDPLAADWSSNLKAVAQKIANAN 288 (291)
T ss_dssp BCCCHH-HHHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCE----EEE-ECTTCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCe----EEE-EcCchhhHHHHHHHHHHHHHHHH
Confidence 556776 67789999999999999863 22 3455555543 222 34445689999999888887654
No 56
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=66.12 E-value=15 Score=28.52 Aligned_cols=68 Identities=12% Similarity=0.158 Sum_probs=42.9
Q ss_pred CCChhhHHHhHHHHhHhcCCCEEEeCC--HHHHHHHhCCCcceEEEEEEe-----CCCCChHHHHHHHHHHHHHhh
Q psy1295 68 DAEPLEIVLHLPLLCEDKNVPYVFVRS--KQALGRACGVSRPIIACSVTV-----DEGSQLKPQIQAIQQQIERLL 136 (137)
Q Consensus 68 D~~~~~~~~~i~~lc~~~~IP~i~~~t--k~eLG~a~G~~~~v~~~ai~~-----~~~s~~~~~i~e~~~~~~~~~ 136 (137)
+.+|. -...+..++++++|+++++.. ...+.+.+-.+.++.++.+.. ..+..+.++++...+.|.+-|
T Consensus 211 eps~~-~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~l~pl~~~~~~~~~Y~~~m~~n~~~l~~aL 285 (286)
T 3gi1_A 211 EPSPR-QLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKTLSPLEAAPSGNKTYLENLRANLEVLYQQL 285 (286)
T ss_dssp -CCHH-HHHHHHHHHHHTTCCEEEECTTSCTHHHHHHHHTTTCEEEECCCSCSCCSSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCeEEEecccccCCCCcCCHHHHHHHHHHHHHHHh
Confidence 55666 678899999999999998742 233444443333333333321 123478899999988887654
No 57
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=64.38 E-value=8.5 Score=29.98 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=37.7
Q ss_pred CCChhhHHHhHHHHhHhcCCCEEEeCCH--HH----H---HHHhCCCcceE---E--E---EEEe--CCCCChHHHHHHH
Q psy1295 68 DAEPLEIVLHLPLLCEDKNVPYVFVRSK--QA----L---GRACGVSRPII---A--C---SVTV--DEGSQLKPQIQAI 128 (137)
Q Consensus 68 D~~~~~~~~~i~~lc~~~~IP~i~~~tk--~e----L---G~a~G~~~~v~---~--~---ai~~--~~~s~~~~~i~e~ 128 (137)
+.+|. -...+..++++++|+++++... .. | .+..|.+..+. . . ++.. ..+..+.++++..
T Consensus 195 eps~~-~l~~l~~~ik~~~v~~if~e~~~~~~~~~~l~~~a~~~g~~v~~l~~~~~~l~~d~l~~~~~~~~~Y~~~m~~N 273 (282)
T 3mfq_A 195 EVANS-DMIETVNLIIDHNIKAIFTESTTNPERMKKLQEAVKAKGGQVEVVTGEGKELFSDSLAPEGEEGDTFIDMYKHN 273 (282)
T ss_dssp CCCHH-HHHHHHHHHHHHTCCEEECBTTSCTHHHHHHHHHHHTTSCCCEEETTTTCCBCSSCCCSTTSTTCSHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHhcCCceEEeccCCccccccccCCCCCCcCCHHHHHHHH
Confidence 34555 5667778888888888876321 22 2 22345442110 0 0 0101 1235788999998
Q ss_pred HHHHHHhh
Q psy1295 129 QQQIERLL 136 (137)
Q Consensus 129 ~~~~~~~~ 136 (137)
.+.|.+-|
T Consensus 274 ~~~l~~aL 281 (282)
T 3mfq_A 274 VKLMVKYL 281 (282)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887644
No 58
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=61.83 E-value=30 Score=26.62 Aligned_cols=68 Identities=7% Similarity=0.077 Sum_probs=45.5
Q ss_pred CCChhhHHHhHHHHhHhcCCCEEEeCC--HHHHHHHhCCCcceEEEEEEeCCC------CChHHHHHHHHHHHHHhh
Q psy1295 68 DAEPLEIVLHLPLLCEDKNVPYVFVRS--KQALGRACGVSRPIIACSVTVDEG------SQLKPQIQAIQQQIERLL 136 (137)
Q Consensus 68 D~~~~~~~~~i~~lc~~~~IP~i~~~t--k~eLG~a~G~~~~v~~~ai~~~~~------s~~~~~i~e~~~~~~~~~ 136 (137)
+.+|. -...+..++++++|++++..+ ...+.+.+-++.++.++.+..-.+ ..+.+.+++..+.+.+-|
T Consensus 206 eps~~-~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~ld~l~~~~~~~~~~Y~~~m~~n~~~l~~aL 281 (284)
T 2prs_A 206 QPGAQ-RLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGTLDPLGTNIKLGKTSYSEFLSQLANQYASCL 281 (284)
T ss_dssp CCCHH-HHHHHHHHHHHTTCCEEEECTTSCSHHHHHHTTTSCCEEEECCTTCTTSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEeccCcccCCCCcccHHHHHHHHHHHHHHHh
Confidence 34555 577889999999999998853 356666666666655443321111 258888988888877644
No 59
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=57.20 E-value=41 Score=29.81 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCcc---ccHHHHHHHH--------HcCcccEEEEecCCChhh------------------------
Q psy1295 29 TKILSLVQQALNYKQLR---KGANEATKTL--------NRGLSEFIVLAADAEPLE------------------------ 73 (137)
Q Consensus 29 ~kl~~lL~~A~~ag~lv---~G~~~v~kaI--------~k~kaklViiA~D~~~~~------------------------ 73 (137)
.++.+.++..+-+|.+= .|......|+ +++..+++|+..|++++.
T Consensus 201 ~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~~~ 280 (690)
T 3fcs_B 201 TRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNH 280 (690)
T ss_dssp HHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCB
T ss_pred HHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCccccCCCccccceecCCCcceeecCCCc
Confidence 34444544444344311 1345555554 335689999999998750
Q ss_pred ----------HHHhHHHHhHhcCCCEEEeCCH------HHHHHHhCCCcceEEEEEEeCCCCChHHHHHHHHHHHH
Q psy1295 74 ----------IVLHLPLLCEDKNVPYVFVRSK------QALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIE 133 (137)
Q Consensus 74 ----------~~~~i~~lc~~~~IP~i~~~tk------~eLG~a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~ 133 (137)
....+.....+++|..+++-+. ++|...++.. .+.+.-.+.+.+.++|.+...+|.
T Consensus 281 y~~s~~~DypSi~ql~~~l~~~~i~~ifavt~~~~~~y~~l~~~i~~s----~v~~l~~dSsni~~li~~~y~~i~ 352 (690)
T 3fcs_B 281 YSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIPGT----TVGVLSMDSSNVLQLIVDAYGKIR 352 (690)
T ss_dssp BGGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHHHSTTC----EEEEECTTCTTHHHHHHHHHHHHT
T ss_pred cccccccCCCCHHHHHHHHHHcCCeEEEEEeCCchhhHHHHHhhcCCc----eeeeeccccHHHHHHHHHHHHhhh
Confidence 0455666677788987776444 3466666542 345666777889999988777663
No 60
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=57.02 E-value=42 Score=22.90 Aligned_cols=84 Identities=17% Similarity=0.170 Sum_probs=51.8
Q ss_pred ccccHHHHHHHHHc----CcccEEEEecCCChhh----HHHhHHHHhHhcCCCEEEeC----CHHHHHHHhCCCcceEEE
Q psy1295 44 LRKGANEATKTLNR----GLSEFIVLAADAEPLE----IVLHLPLLCEDKNVPYVFVR----SKQALGRACGVSRPIIAC 111 (137)
Q Consensus 44 lv~G~~~v~kaI~k----~kaklViiA~D~~~~~----~~~~i~~lc~~~~IP~i~~~----tk~eLG~a~G~~~~v~~~ 111 (137)
+..|.....+.+.+ +..+.||+-.|..+.+ ........++..+|++..++ +..+|-...+.+.++
T Consensus 84 ~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~igvg~~~~~~L~~ia~~~~~~--- 160 (182)
T 1shu_X 84 IHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQV--- 160 (182)
T ss_dssp HHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHSSSGGGE---
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEEeCCcCCHHHHHHHhCCCCce---
Confidence 55566666666643 4568888888876432 12345567788999987653 567788877766443
Q ss_pred EEEeC-CCCChHHHHHHHHHH
Q psy1295 112 SVTVD-EGSQLKPQIQAIQQQ 131 (137)
Q Consensus 112 ai~~~-~~s~~~~~i~e~~~~ 131 (137)
.... +.+++.+.++++.++
T Consensus 161 -~~~~~~~~~L~~~~~~i~~~ 180 (182)
T 1shu_X 161 -FPVKGGFQALKGIINSILAQ 180 (182)
T ss_dssp -EESSSTTHHHHHHHHHHHHT
T ss_pred -EEccCCHHHHHHHHHHHHhc
Confidence 2233 345666666665543
No 61
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=56.87 E-value=26 Score=27.46 Aligned_cols=61 Identities=10% Similarity=0.045 Sum_probs=41.5
Q ss_pred cCC-ccccHHHHHHHHHcCc-ccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhCCC
Q psy1295 41 YKQ-LRKGANEATKTLNRGL-SEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACGVS 105 (137)
Q Consensus 41 ag~-lv~G~~~v~kaI~k~k-aklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G~~ 105 (137)
.|. ++.|.+.|..+++.+. +.-+++..+.........+ .+..++|+.. -+.+.|.+..+..
T Consensus 38 ~g~f~veG~~~V~eal~~~~~i~~l~~~~~~~~~~~~~~l---~~~~~~~v~~-v~~~~l~~ls~~~ 100 (287)
T 1x7o_A 38 AGEFLVMGVRPISLAVEHGWPVRTLLYDGQRELSKWAREL---LRTVRTEQIA-MAPDLLMELGEKN 100 (287)
T ss_dssp HTEEEEESHHHHHHHHHTTCCEEEEEEESSCCCCHHHHHH---HHHSCSEEEE-ECHHHHTTSSCSS
T ss_pred cCcEEEEeHHHHHHHHhCCCCeEEEEEecCcccchhHHHH---HHHcCCcEEE-eCHHHHHHHhCCC
Confidence 344 7899999999999875 7788888876431112233 3333577644 4678899988876
No 62
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=55.75 E-value=43 Score=22.39 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=33.0
Q ss_pred HHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe-CCHHHHHHHhCCC
Q psy1295 50 EATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV-RSKQALGRACGVS 105 (137)
Q Consensus 50 ~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~-~tk~eLG~a~G~~ 105 (137)
+..+..+...+.+|.|+.| ++. .+..+++++++++... ....++.+..|..
T Consensus 60 ~~~~~~~~~~~~vv~vs~d-~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 111 (163)
T 3gkn_A 60 ALLPEFDKAGAKILGVSRD-SVK----SHDNFCAKQGFAFPLVSDGDEALCRAFDVI 111 (163)
T ss_dssp HHHHHHHHTTCEEEEEESS-CHH----HHHHHHHHHCCSSCEEECTTCHHHHHTTCE
T ss_pred HHHHHHHHCCCEEEEEeCC-CHH----HHHHHHHHhCCCceEEECCcHHHHHHhCCc
Confidence 3334444455888999988 333 3445667778876654 4556888888874
No 63
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=54.59 E-value=40 Score=21.67 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=16.8
Q ss_pred cEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 61 EFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 61 klViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
.++|-..+.=|. =.....+-+++||||..+
T Consensus 5 ~I~vYs~~~Cp~--C~~aK~~L~~~gi~y~~i 34 (92)
T 2lqo_A 5 ALTIYTTSWCGY--CLRLKTALTANRIAYDEV 34 (92)
T ss_dssp CEEEEECTTCSS--HHHHHHHHHHTTCCCEEE
T ss_pred cEEEEcCCCCHh--HHHHHHHHHhcCCceEEE
Confidence 344444444343 234566667788887754
No 64
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=54.13 E-value=0.82 Score=32.58 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=32.8
Q ss_pred ccccccCCCCCCCcccCCCCChHHHHHHHHHHHHHHHcCC
Q psy1295 4 FLYFQTNEEPAVNPKAYPLADTALTTKILSLVQQALNYKQ 43 (137)
Q Consensus 4 ~~~~~~~~~~~~~~~~~p~a~~~~~~kl~~lL~~A~~ag~ 43 (137)
-||||.|-| ..-++-|.+.++...+..+-.+|+++.+
T Consensus 17 ~~~~~~~~m---ekrySeMS~~EL~~EI~~L~EKaRKAEq 53 (128)
T 1sf9_A 17 NLYFQSNAM---EKRYSQMTPHELNTEIALLSEKARKAEQ 53 (128)
T ss_dssp HHHHHHHHH---HHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeecchh---hHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 489999999 6778889999999999999999999865
No 65
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=54.10 E-value=48 Score=24.27 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=43.4
Q ss_pred HHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC---CH-------HHHHHHhCCCcceEEEEEEeCCCCC
Q psy1295 51 ATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR---SK-------QALGRACGVSRPIIACSVTVDEGSQ 120 (137)
Q Consensus 51 v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~---tk-------~eLG~a~G~~~~v~~~ai~~~~~s~ 120 (137)
-.+.|.+-+-.+||......+.+..+.+ ++.+||++.+. +- ..||+++|++ ++
T Consensus 51 n~E~i~~l~PDlIi~~~~~~~~~~~~~L----~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~-------------~~ 113 (255)
T 3md9_A 51 NAEGILAMKPTMLLVSELAQPSLVLTQI----ASSGVNVVTVPGQTTPESVAMKINAVATALHQT-------------EK 113 (255)
T ss_dssp CHHHHHTTCCSEEEEETTCSCHHHHHHH----HHTTCEEEEECCCCSHHHHHHHHHHHHHHHTCH-------------HH
T ss_pred CHHHHHccCCCEEEEcCCcCchhHHHHH----HHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCH-------------HH
Confidence 4667777888899888776543244444 56789998774 22 3588888865 33
Q ss_pred hHHHHHHHHHHHHH
Q psy1295 121 LKPQIQAIQQQIER 134 (137)
Q Consensus 121 ~~~~i~e~~~~~~~ 134 (137)
..++++++.+++++
T Consensus 114 A~~l~~~~~~~~~~ 127 (255)
T 3md9_A 114 GQKLIEDYQQRLAA 127 (255)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 44566666666654
No 66
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=53.68 E-value=28 Score=26.80 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=43.7
Q ss_pred CCChhhHHHhHHHHhHhcCCCEEEeCC--HHHHHHHhCCCcceEEEEEEeCC-----CCChHHHHHHHHHHHHHhh
Q psy1295 68 DAEPLEIVLHLPLLCEDKNVPYVFVRS--KQALGRACGVSRPIIACSVTVDE-----GSQLKPQIQAIQQQIERLL 136 (137)
Q Consensus 68 D~~~~~~~~~i~~lc~~~~IP~i~~~t--k~eLG~a~G~~~~v~~~ai~~~~-----~s~~~~~i~e~~~~~~~~~ 136 (137)
+.+|. -...+..++++++|+++++.+ ...+.+.+-.+.++.++.+..-. +..+.++++...+.+.+-|
T Consensus 209 eps~~-~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~l~~l~~~~~~~~~Y~~~m~~n~~~l~~aL 283 (284)
T 3cx3_A 209 EPSPR-QLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLKTLNPLESDPQNDKTYLENLEENMSILAEEL 283 (284)
T ss_dssp CCCSH-HHHHHHHHHHHTTCCCEEECSSSCCHHHHHHHSSSSCCEEECCCSSSCCCSSCCHHHHHHHHHHHHHHCC
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCeEEEecCcccCCCCcccHHHHHHHHHHHHHHHh
Confidence 34565 677889999999999998742 23444444444444333332211 2478899999888887644
No 67
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=53.24 E-value=11 Score=24.48 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=22.1
Q ss_pred EEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 63 IVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 63 ViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
+++|+=.+. +..++...++++|||++.-.
T Consensus 19 ~VvAKG~~~--~A~~I~~~A~e~~VPi~e~~ 47 (83)
T 3bzy_B 19 LVIETGKDA--KALQIIKLAELYDIPVIEDI 47 (83)
T ss_dssp EEEEEEETH--HHHHHHHHHHHTTCCEEECH
T ss_pred EEEEEeCcH--HHHHHHHHHHHcCCCEEeCH
Confidence 455555444 78999999999999987643
No 68
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=52.68 E-value=31 Score=26.78 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=28.0
Q ss_pred HHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 50 EATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 50 ~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
+..+.+.+..++++++|.|..-. --+..+-+..+||++-+
T Consensus 77 ~~~~~L~~~g~d~IVIACNTas~---~~l~~lr~~~~iPVigi 116 (290)
T 2vvt_A 77 EMADFLLKKRIKMLVIACNTATA---VALEEIKAALPIPVVGV 116 (290)
T ss_dssp HHHHHHHTTTCSEEEECCHHHHH---HHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHCCCCEEEEeCcchhH---HHHHHHHHhCCCCEEcc
Confidence 44456667779999999987432 13555667779999874
No 69
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=52.37 E-value=15 Score=29.44 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=32.1
Q ss_pred HHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 51 ATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 51 v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
..+.+-..+.-.+|++++..|. ..+...|++++||+....
T Consensus 75 ~~~~l~~~~iP~IIvtrg~~pp---~elie~A~e~~ipLl~T~ 114 (312)
T 1knx_A 75 ILHNLLKLNPPAIILTKSFTDP---TVLLQVNQTYQVPILKTD 114 (312)
T ss_dssp THHHHHTTCCSCEEEETTTCCC---HHHHHHGGGTCCCEEEES
T ss_pred HHHHHhCCCCCEEEEECCCCCC---HHHHHHHHHcCCEEEEeC
Confidence 4445556788899999998876 477899999999998764
No 70
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=51.95 E-value=26 Score=26.78 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=41.6
Q ss_pred cccccccCCCCCCCcccCCCCChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHh
Q psy1295 3 TFLYFQTNEEPAVNPKAYPLADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLC 82 (137)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~p~a~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc 82 (137)
.|+||-|+.-.+-.+.. .+++.+. ..+..+.+.+..++++++|.|.... . -+..+-
T Consensus 30 ~~iy~~D~~~~Pyg~~s----~~~i~~~-----------------~~~~~~~L~~~g~d~iviaCNTas~-~--~l~~lr 85 (267)
T 2gzm_A 30 RIIYLGDTARCPYGPRS----REEVRQF-----------------TWEMTEHLLDLNIKMLVIACNTATA-V--VLEEMQ 85 (267)
T ss_dssp CEEEEECTTTCCCTTSC----HHHHHHH-----------------HHHHHHHHHTTTCSEEEECCHHHHH-H--HHHHHH
T ss_pred CEEEecCCCCCCCCCCC----HHHHHHH-----------------HHHHHHHHHHCCCCEEEEeCchhhH-H--HHHHHH
Confidence 47788888755544332 3333333 3344456667779999999997552 1 255666
Q ss_pred HhcCCCEEEe
Q psy1295 83 EDKNVPYVFV 92 (137)
Q Consensus 83 ~~~~IP~i~~ 92 (137)
+..+||++-+
T Consensus 86 ~~~~iPvigi 95 (267)
T 2gzm_A 86 KQLPIPVVGV 95 (267)
T ss_dssp HHCSSCEEES
T ss_pred HhCCCCEEee
Confidence 7779998874
No 71
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=51.80 E-value=11 Score=29.34 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=41.3
Q ss_pred cccccccCCCCCCCcccCCCCChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHh
Q psy1295 3 TFLYFQTNEEPAVNPKAYPLADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLC 82 (137)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~p~a~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc 82 (137)
.|+||+|+.-.+-.+..+ +++.+.+. +..+.+++..+++++||.|.... --+..+-
T Consensus 34 ~~iy~~D~a~~PYG~~~~----~~i~~~~~-----------------~~~~~L~~~g~~~iVIACNTa~~---~al~~lr 89 (268)
T 3out_A 34 DIIYFGDIARIPYGTKSR----ATIQKFAA-----------------QTAKFLIDQEVKAIIIACNTISA---IAKDIVQ 89 (268)
T ss_dssp CEEEEECTTTCCCTTSCH----HHHHHHHH-----------------HHHHHHHHTTCSEEEECCHHHHH---HHHHHHH
T ss_pred cEEEecCCCCCCCCCCCH----HHHHHHHH-----------------HHHHHHHHCCCCEEEEeCCChHH---HHHHHHH
Confidence 478888886665555432 33333322 24456667789999999886432 2345556
Q ss_pred Hhc-CCCEEEe
Q psy1295 83 EDK-NVPYVFV 92 (137)
Q Consensus 83 ~~~-~IP~i~~ 92 (137)
+.. +||++-+
T Consensus 90 ~~~~~iPvigi 100 (268)
T 3out_A 90 EIAKAIPVIDV 100 (268)
T ss_dssp HHHTTSCEEEH
T ss_pred HhcCCCCEEec
Confidence 666 8999863
No 72
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=51.66 E-value=40 Score=23.46 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=33.9
Q ss_pred HHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe-CCHHHHHHHhCCC
Q psy1295 49 NEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV-RSKQALGRACGVS 105 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~-~tk~eLG~a~G~~ 105 (137)
++..+..+...+.++.|+.|. +. .+..+++++++++..+ ....++.++.|..
T Consensus 75 ~~l~~~~~~~~~~vv~Vs~D~-~~----~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~ 127 (179)
T 3ixr_A 75 NLLLPQFEQINATVLGVSRDS-VK----SHDSFCAKQGFTFPLVSDSDAILCKAFDVI 127 (179)
T ss_dssp HHHHHHHHTTTEEEEEEESCC-HH----HHHHHHHHHTCCSCEEECTTCHHHHHTTCE
T ss_pred HHHHHHHHHCCCEEEEEcCCC-HH----HHHHHHHHcCCceEEEECCchHHHHHcCCc
Confidence 334444555567888888874 22 3456777888876654 4456888888874
No 73
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=51.48 E-value=91 Score=24.88 Aligned_cols=73 Identities=8% Similarity=0.103 Sum_probs=51.5
Q ss_pred CcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHH-HhCCCcceEEEEEEeCCCCChHHHHHHHHHHHHHh
Q psy1295 58 GLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGR-ACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIERL 135 (137)
Q Consensus 58 ~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~-a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~~~ 135 (137)
+++.++|+-.+-.-. -..+|...|++.+.|-+.+.+-.+|-. |+.-.. .++|+.+ .|-=..+++|+.+.+.++
T Consensus 208 ~~~D~miVVGg~nSS-NT~rL~eia~~~~~~ty~Ie~~~el~~~wl~~~~---~VGITAG-ASTP~~li~eVi~~l~~~ 281 (297)
T 3dnf_A 208 PEVDVMIIIGGKNSG-NTRRLYYISKELNPNTYHIETAEELQPEWFRGVK---RVGISAG-ASTPDWIIEQVKSRIQEI 281 (297)
T ss_dssp GGSSEEEEESCTTCH-HHHHHHHHHHHHCSSEEEESSGGGCCGGGGTTCS---EEEEEEC-TTCCHHHHHHHHHHHHHC
T ss_pred hhCCEEEEECCCCCc-hhHHHHHHHHhcCCCEEEeCChHHCCHHHhCCCC---EEEEeec-CCCCHHHHHHHHHHHHHh
Confidence 468888887776554 578999999999999999999999864 453221 2345444 454456777777777654
No 74
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=50.96 E-value=29 Score=23.51 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=42.2
Q ss_pred cccEEEEecCCC------hhhHHHhHHHHhHh-----cCCCEEEeCCHHHHHH---------HhCCCcce-EEEEEEeCC
Q psy1295 59 LSEFIVLAADAE------PLEIVLHLPLLCED-----KNVPYVFVRSKQALGR---------ACGVSRPI-IACSVTVDE 117 (137)
Q Consensus 59 kaklViiA~D~~------~~~~~~~i~~lc~~-----~~IP~i~~~tk~eLG~---------a~G~~~~v-~~~ai~~~~ 117 (137)
.+..+++.-|++ ..+....+..+..+ .++|++.+++|.+|-. .+.. .+. ...-+-...
T Consensus 97 ~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 175 (198)
T 3t1o_A 97 GVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP-EGKFPVLEAVATE 175 (198)
T ss_dssp TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT-TCCSCEEECBGGG
T ss_pred cCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHh-cCCceEEEEecCC
Confidence 456666666775 22244455554443 5899999988776532 2221 222 222232344
Q ss_pred CCChHHHHHHHHHHHHH
Q psy1295 118 GSQLKPQIQAIQQQIER 134 (137)
Q Consensus 118 ~s~~~~~i~e~~~~~~~ 134 (137)
+..+.++++.+...+.+
T Consensus 176 ~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 176 GKGVFETLKEVSRLVLA 192 (198)
T ss_dssp TBTHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 56788888887776643
No 75
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=50.94 E-value=15 Score=24.89 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=39.7
Q ss_pred CcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhCCC---------cceEEEEEEeCCCCChHHHHHHH
Q psy1295 58 GLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACGVS---------RPIIACSVTVDEGSQLKPQIQAI 128 (137)
Q Consensus 58 ~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G~~---------~~v~~~ai~~~~~s~~~~~i~e~ 128 (137)
..+.++++.-|+...+-.........+.++|++.+.+|.+|-..-... .+....-+-...+..+.++++.+
T Consensus 80 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l 159 (165)
T 2wji_A 80 EKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAI 159 (165)
T ss_dssp HCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHH
T ss_pred CCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHH
Confidence 346777777777543222222223344689999999888774322111 01111122223345777777776
Q ss_pred HHHH
Q psy1295 129 QQQI 132 (137)
Q Consensus 129 ~~~~ 132 (137)
...+
T Consensus 160 ~~~~ 163 (165)
T 2wji_A 160 SIAV 163 (165)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6554
No 76
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=50.11 E-value=23 Score=23.88 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=21.7
Q ss_pred cccEEEEecCCChhhHHHhHHHHhHhcCCCE
Q psy1295 59 LSEFIVLAADAEPLEIVLHLPLLCEDKNVPY 89 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~~lc~~~~IP~ 89 (137)
++.+|.|..|-.. +....+..+++++++++
T Consensus 69 ~~~vv~is~d~~~-d~~~~~~~~~~~~~~~~ 98 (174)
T 1xzo_A 69 DVRIISFSVDPEN-DKPKQLKKFAANYPLSF 98 (174)
T ss_dssp CCEEEEEESCTTT-CCHHHHHHHHTTSCCCG
T ss_pred cEEEEEEEeCCCC-CCHHHHHHHHHHcCCCC
Confidence 4778888887432 24556778889999986
No 77
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=49.54 E-value=77 Score=24.99 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=42.2
Q ss_pred CCChhhHHHhHHHHhHhcCCCEEEeC--CHHHHHHHhCCCcceEEEEEE-eCC-------CCChHHHHHHHHHHHHHhh
Q psy1295 68 DAEPLEIVLHLPLLCEDKNVPYVFVR--SKQALGRACGVSRPIIACSVT-VDE-------GSQLKPQIQAIQQQIERLL 136 (137)
Q Consensus 68 D~~~~~~~~~i~~lc~~~~IP~i~~~--tk~eLG~a~G~~~~v~~~ai~-~~~-------~s~~~~~i~e~~~~~~~~~ 136 (137)
+.+|. -...+...+++++|++++.. ....+.+.+-++.++.++... ... +..+.+.+++..+.+.+-|
T Consensus 236 eps~~-~l~~l~~~ik~~~v~~If~e~~~~~~~~~~iA~e~g~~v~~~l~~d~l~~~~~~~~~Y~~~m~~n~~~l~~aL 313 (321)
T 1xvl_A 236 QFTPK-QVQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATGARFGGNLYVDSLSTEEGPVPTFLDLLEYDARVITNGL 313 (321)
T ss_dssp SCCHH-HHHHHHHHHHTTTCSEEEEETTSCSHHHHHHHTTTCCEEEEEECSSCCCCSSSSCCSHHHHHHHHHHHHHTTS
T ss_pred CCCHH-HHHHHHHHHHHcCCcEEEEeCCCChHHHHHHHHhcCCceeeeecCCccCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 44666 57788899999999999873 223444444444334333222 111 2378899999888887643
No 78
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=49.33 E-value=17 Score=26.28 Aligned_cols=82 Identities=17% Similarity=0.125 Sum_probs=45.0
Q ss_pred HHHHHHHHc-CcccEEEEecCCChhh--HHHhHHHHhHhcCCCEE--EeCCHHHHHHHhCCCcceEEEEEEe-CCCC-Ch
Q psy1295 49 NEATKTLNR-GLSEFIVLAADAEPLE--IVLHLPLLCEDKNVPYV--FVRSKQALGRACGVSRPIIACSVTV-DEGS-QL 121 (137)
Q Consensus 49 ~~v~kaI~k-~kaklViiA~D~~~~~--~~~~i~~lc~~~~IP~i--~~~tk~eLG~a~G~~~~v~~~ai~~-~~~s-~~ 121 (137)
..+.+.+++ +..++.++...++++. ....+....++.++|+. .++....+.++......+. .. ...+ ..
T Consensus 109 ~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~l~~~g~~v~~~~Ip~~~~~~~a~~~g~~v~----~~~~p~~~~~ 184 (209)
T 3cwq_A 109 MLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQLLTTAGLPLFKRGIKRYSAFQKASLNGVVVS----EVSDSKAGIA 184 (209)
T ss_dssp HHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHHHHHHTTCCBCSSCCBCCTHHHHHHHHTSCTT----TSSSTTHHHH
T ss_pred HHHHHHHHhccCCCEEEEEEecCCccchHHHHHHHHHHHcCCchhhccCCCcHHHHHHHHcCCCHH----HhCCccchhH
Confidence 344444444 2445667777766541 34566667777888876 4666777777654332221 12 2334 55
Q ss_pred HHHHHHHHHHHHH
Q psy1295 122 KPQIQAIQQQIER 134 (137)
Q Consensus 122 ~~~i~e~~~~~~~ 134 (137)
...++++.+++.+
T Consensus 185 ~~~~~~l~~el~~ 197 (209)
T 3cwq_A 185 WSDYKATGKEIVE 197 (209)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 79
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=49.03 E-value=28 Score=25.23 Aligned_cols=57 Identities=7% Similarity=0.119 Sum_probs=36.8
Q ss_pred HHHHHHHHcCcccEEEEecCCCh---hhHHHhHHHHhHhcCCCEEEe-CCHHHHHHHhCCC
Q psy1295 49 NEATKTLNRGLSEFIVLAADAEP---LEIVLHLPLLCEDKNVPYVFV-RSKQALGRACGVS 105 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~D~~~---~~~~~~i~~lc~~~~IP~i~~-~tk~eLG~a~G~~ 105 (137)
.+..+......+.+|.|..|-.. .+....+..+++++++++... ....++.+..|..
T Consensus 82 ~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~ 142 (218)
T 3u5r_E 82 AKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAA 142 (218)
T ss_dssp HHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTCC
T ss_pred HHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcCCC
Confidence 33334444444777777775321 135667788889999887655 4457899999876
No 80
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=47.84 E-value=32 Score=26.39 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=41.4
Q ss_pred cccccccCCCCCCCcccCCCCChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHc-CcccEEEEecCCChhhHHHhHHHH
Q psy1295 3 TFLYFQTNEEPAVNPKAYPLADTALTTKILSLVQQALNYKQLRKGANEATKTLNR-GLSEFIVLAADAEPLEIVLHLPLL 81 (137)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~p~a~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k-~kaklViiA~D~~~~~~~~~i~~l 81 (137)
.|+||-|+.-.+-.+. ..+++.+.+ .+..+.+.+ ..++++++|.|.... . -+..+
T Consensus 30 ~~iy~~D~~~~PyG~~----s~~~i~~~~-----------------~~~~~~L~~~~g~d~iViACNTas~-~--~l~~l 85 (272)
T 1zuw_A 30 NIIYVGDTKRCPYGPR----PEEEVLQYT-----------------WELTNYLLENHHIKMLVIACNTATA-I--ALDDI 85 (272)
T ss_dssp CEEEEECGGGCCCSSS----CHHHHHHHH-----------------HHHHHHHHHHSCCSEEEECCHHHHH-H--HHHHH
T ss_pred cEEEeccCCCCCCCCC----CHHHHHHHH-----------------HHHHHHHHhhcCCCEEEEeCchhhH-H--HHHHH
Confidence 4678888765543332 234444433 344555666 679999999997553 1 25556
Q ss_pred hHhcCCCEEEe
Q psy1295 82 CEDKNVPYVFV 92 (137)
Q Consensus 82 c~~~~IP~i~~ 92 (137)
-+..+||++-+
T Consensus 86 r~~~~iPVigi 96 (272)
T 1zuw_A 86 QRSVGIPVVGV 96 (272)
T ss_dssp HHHCSSCEEES
T ss_pred HHHCCCCEEcc
Confidence 67779998864
No 81
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=47.54 E-value=94 Score=24.33 Aligned_cols=68 Identities=10% Similarity=0.053 Sum_probs=42.4
Q ss_pred CCChhhHHHhHHHHhHhcCCCEEEeC--CHHHHHHHhC-----CCcceEEEEE--EeCC------CCChHHHHHHHHHHH
Q psy1295 68 DAEPLEIVLHLPLLCEDKNVPYVFVR--SKQALGRACG-----VSRPIIACSV--TVDE------GSQLKPQIQAIQQQI 132 (137)
Q Consensus 68 D~~~~~~~~~i~~lc~~~~IP~i~~~--tk~eLG~a~G-----~~~~v~~~ai--~~~~------~s~~~~~i~e~~~~~ 132 (137)
+.+|. -...+..++++++|++++.. ....+.+.+- ++.++.++.+ ...- +..+.+.+++..+.+
T Consensus 229 eps~~-~l~~l~~~ik~~~v~~If~e~~~~~~~~~~la~~~~A~e~gv~v~~~l~~d~l~~~~~~~~~Y~~~m~~n~~~l 307 (313)
T 1toa_A 229 EASAH-DMQELAAFIAQRKLPAIFIESSIPHKNVEALRDAVQARGHVVQIGGELFSDAMGDAGTSEGTYVGMVTHNIDTI 307 (313)
T ss_dssp CCCHH-HHHHHHHHHHHTTCSEEEEETTSCTHHHHHHHHHHHTTTCCCEEEEEECSSSCCCTTSGGGSHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHccchhhhcCCceeeeeeccCCCCCCCCccCHHHHHHHHHHHH
Confidence 34565 67788999999999999874 2234444443 4444433222 1211 147888999888888
Q ss_pred HHhh
Q psy1295 133 ERLL 136 (137)
Q Consensus 133 ~~~~ 136 (137)
.+-|
T Consensus 308 ~~aL 311 (313)
T 1toa_A 308 VAAL 311 (313)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
No 82
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=47.01 E-value=49 Score=25.27 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=24.4
Q ss_pred HHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 51 ATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 51 v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
-.+.|..-+-.+||.....++. ..+.+ ++.|||++.+.
T Consensus 76 n~E~i~~l~PDlIi~~~~~~~~-~~~~L----~~~Gipvv~~~ 113 (326)
T 3psh_A 76 NIESLLALKPDVVFVTNYAPSE-MIKQI----SDVNIPVVAIS 113 (326)
T ss_dssp CHHHHHHTCCSEEEEETTCCHH-HHHHH----HTTTCCEEEEC
T ss_pred CHHHHHccCCCEEEEeCCCChH-HHHHH----HHcCCCEEEEe
Confidence 3455666677888877554332 44433 57799999874
No 83
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=46.93 E-value=31 Score=26.53 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=41.0
Q ss_pred cccccccCCCCCCCcccCCCCChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHh
Q psy1295 3 TFLYFQTNEEPAVNPKAYPLADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLC 82 (137)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~p~a~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc 82 (137)
.|+||-|+.-.+-.+ ...+++.+.+ .+..+.+.+..++++++|-|.... --+..+-
T Consensus 34 ~~iy~~D~~~~PyG~----~s~~~i~~~~-----------------~~~~~~L~~~g~d~IViACNTas~---~~l~~lr 89 (276)
T 2dwu_A 34 SICYIGDNERCPYGP----RSVEEVQSFV-----------------FEMVEFLKQFPLKALVVACNTAAA---ATLAALQ 89 (276)
T ss_dssp CEEEEECGGGCCCTT----SCHHHHHHHH-----------------HHHHHHHTTSCEEEEEECCHHHHH---HHHHHHH
T ss_pred cEEEccCCCCCCCCC----CCHHHHHHHH-----------------HHHHHHHHHCCCCEEEEeCCcHHH---HHHHHHH
Confidence 367777776554333 3344444433 344455667779999999986431 2355666
Q ss_pred HhcCCCEEEe
Q psy1295 83 EDKNVPYVFV 92 (137)
Q Consensus 83 ~~~~IP~i~~ 92 (137)
+..+||++-+
T Consensus 90 ~~~~iPVigi 99 (276)
T 2dwu_A 90 EALSIPVIGV 99 (276)
T ss_dssp HHCSSCEEES
T ss_pred HHCCCCEEec
Confidence 7779998863
No 84
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=46.16 E-value=56 Score=25.42 Aligned_cols=88 Identities=15% Similarity=0.182 Sum_probs=54.8
Q ss_pred CcccCCCCChHH-HH-------------HHHHHHHHHHHcC-C---cc---------ccHHHHHHHHHcCcccEEEEecC
Q psy1295 16 NPKAYPLADTAL-TT-------------KILSLVQQALNYK-Q---LR---------KGANEATKTLNRGLSEFIVLAAD 68 (137)
Q Consensus 16 ~~~~~p~a~~~~-~~-------------kl~~lL~~A~~ag-~---lv---------~G~~~v~kaI~k~kaklViiA~D 68 (137)
.|++-|+++-.+ ++ +++++++..++.+ . +. .|...-.+...+--+.-|++ .|
T Consensus 55 iPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIi-pD 133 (271)
T 3nav_A 55 MPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLI-AD 133 (271)
T ss_dssp CCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEE-TT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEE-CC
Confidence 588999997633 32 5677888877652 1 22 25444444443333555555 58
Q ss_pred CChhhHHHhHHHHhHhcCCCEEEe--C-C-HHHHHHHhCCC
Q psy1295 69 AEPLEIVLHLPLLCEDKNVPYVFV--R-S-KQALGRACGVS 105 (137)
Q Consensus 69 ~~~~~~~~~i~~lc~~~~IP~i~~--~-t-k~eLG~a~G~~ 105 (137)
..+. -...+...|+++|+..++. + | .+++-+.....
T Consensus 134 lp~e-e~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~ 173 (271)
T 3nav_A 134 VPTN-ESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLG 173 (271)
T ss_dssp SCGG-GCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHC
T ss_pred CCHH-HHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHC
Confidence 8886 4788999999999976643 3 2 35666654443
No 85
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=45.18 E-value=38 Score=25.51 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=41.3
Q ss_pred cccccccCCCCCCCcccCCCCChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHh
Q psy1295 3 TFLYFQTNEEPAVNPKAYPLADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLC 82 (137)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~p~a~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc 82 (137)
.|+||-|+.-.+-.+ ...+++.+++. +..+.+.+..++.+++|.+.... --+..+-
T Consensus 27 ~~iy~~D~~~~pyG~----~s~~~i~~~~~-----------------~~~~~L~~~g~d~iviaCnTa~~---~~~~~lr 82 (254)
T 1b73_A 27 DIVYLGDTARVPYGI----RSKDTIIRYSL-----------------ECAGFLKDKGVDIIVVACNTASA---YALERLK 82 (254)
T ss_dssp EEEEEECTTTCCCTT----SCHHHHHHHHH-----------------HHHHHHHTTTCSEEEECCHHHHT---TSHHHHH
T ss_pred cEEEeecCCCCCCCc----CCHHHHHHHHH-----------------HHHHHHHHCCCCEEEEeCchhhH---HHHHHHH
Confidence 477888887555333 23344444442 34455667779999999987541 1244555
Q ss_pred HhcCCCEEEe
Q psy1295 83 EDKNVPYVFV 92 (137)
Q Consensus 83 ~~~~IP~i~~ 92 (137)
+..+||++-+
T Consensus 83 ~~~~iPvigi 92 (254)
T 1b73_A 83 KEINVPVFGV 92 (254)
T ss_dssp HHSSSCEEES
T ss_pred HhCCCCEEee
Confidence 6678998874
No 86
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=44.17 E-value=27 Score=23.62 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=30.1
Q ss_pred CcccEEEEecCCChhhHHHhHHHHhHhcCC-CEEEeCC--HHHHHHHhCCCc
Q psy1295 58 GLSEFIVLAADAEPLEIVLHLPLLCEDKNV-PYVFVRS--KQALGRACGVSR 106 (137)
Q Consensus 58 ~kaklViiA~D~~~~~~~~~i~~lc~~~~I-P~i~~~t--k~eLG~a~G~~~ 106 (137)
..+.++.|..|. +. .+..+++++++ ++-...+ ..++.+..|...
T Consensus 75 ~~~~vv~is~d~-~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~ 121 (167)
T 2jsy_A 75 GDVNVYTISADL-PF----AQARWCGANGIDKVETLSDHRDMSFGEAFGVYI 121 (167)
T ss_dssp SSCEEEEEECSS-GG----GTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBB
T ss_pred CCCEEEEEECCC-HH----HHHHHHHhcCCCCceEeeCCchhHHHHHhCCcc
Confidence 568888888873 32 34567788888 6665544 467888888753
No 87
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=44.10 E-value=42 Score=24.96 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=27.9
Q ss_pred HHHHHHHHHcC--cccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 48 ANEATKTLNRG--LSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 48 ~~~v~kaI~k~--kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
...+++++.++ ...++.+-+|-+. ..+..+|+++|||+..+.
T Consensus 17 ~~~~l~~l~~~~l~~~I~~Vit~~~~----~~v~~~A~~~gIp~~~~~ 60 (212)
T 3av3_A 17 FQAIVDAAKRGDLPARVALLVCDRPG----AKVIERAARENVPAFVFS 60 (212)
T ss_dssp HHHHHHHHHTTCCCEEEEEEEESSTT----CHHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHHhCCCCCeEEEEEeCCCC----cHHHHHHHHcCCCEEEeC
Confidence 34566777777 4666666665322 245678999999998653
No 88
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=43.76 E-value=15 Score=24.55 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=25.2
Q ss_pred EEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhC
Q psy1295 63 IVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACG 103 (137)
Q Consensus 63 ViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G 103 (137)
+|+|+=.+. +...|...++++|||++.-. .|.+++-
T Consensus 19 ~VvAKG~~~--~A~~I~e~A~e~gVPi~e~~---~LAr~Ly 54 (93)
T 2vt1_B 19 FISLIETNQ--CALAVRKYANEVGIPTVRDV---KLARKLY 54 (93)
T ss_dssp EEEEEEEHH--HHHHHHHHHHHTTCCEEECH---HHHHHHH
T ss_pred EEEEEeCcH--HHHHHHHHHHHcCCCEEECH---HHHHHHH
Confidence 455555433 78999999999999987543 4554444
No 89
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=43.71 E-value=94 Score=25.15 Aligned_cols=73 Identities=11% Similarity=0.138 Sum_probs=50.8
Q ss_pred CcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHH-HhCCCcceEEEEEEeCCCCChHHHHHHHHHHHHHh
Q psy1295 58 GLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGR-ACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIERL 135 (137)
Q Consensus 58 ~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~-a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~~~ 135 (137)
+++.++|+-.+-+-. -..+|...|++.+.|-+.+.+-.+|-. |+.-.. .++|+.+ .|-=..+++++.+.+.++
T Consensus 224 ~~vD~miVVGg~nSS-NT~rL~eia~~~g~~ty~Ie~~~el~~~wl~g~~---~VGITAG-ASTP~~lieeVi~~l~~~ 297 (328)
T 3szu_A 224 EQAEVVLVVGSKNSS-NSNRLAELAQRMGKRAFLIDDAKDIQEEWVKEVK---CVGVTAG-ASAPDILVQNVVARLQQL 297 (328)
T ss_dssp HHCSEEEEECCTTCH-HHHHHHHHHHHTTCEEEEESSGGGCCHHHHTTCS---EEEEEEC-TTCCHHHHHHHHHHHHHT
T ss_pred HhCCEEEEeCCCCCc-hHHHHHHHHHHhCCCEEEeCChHHCCHHHhCCCC---EEEEeec-CCCCHHHHHHHHHHHHHh
Confidence 357777777776554 478999999999999989999988864 453221 2345444 455456788888777664
No 90
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=43.34 E-value=12 Score=29.11 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=28.5
Q ss_pred HHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 49 NEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
.+..+.+.+..++++++|.|.... . -+..+-+..+||++-+
T Consensus 74 ~~~~~~L~~~g~d~IVIaCNTas~-~--~l~~lr~~~~iPVigi 114 (286)
T 2jfq_A 74 VEIARKLMEFDIKMLVIACNTATA-V--ALEYLQKTLSISVIGV 114 (286)
T ss_dssp HHHHHHHTTSCCSEEEECCHHHHH-H--HHHHHHHHCSSEEEES
T ss_pred HHHHHHHHHCCCCEEEEeCCchhH-H--HHHHHHHhCCCCEEec
Confidence 344466667779999999997553 1 2555556678998864
No 91
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=43.31 E-value=72 Score=21.37 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=34.3
Q ss_pred HHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe-CCHHHHHHHhCCC
Q psy1295 51 ATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV-RSKQALGRACGVS 105 (137)
Q Consensus 51 v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~-~tk~eLG~a~G~~ 105 (137)
..+..+...+.+|.|..|. + ..+..+++++++++-.. ....++.+..|..
T Consensus 55 ~~~~~~~~~v~vv~vs~d~-~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 105 (161)
T 3drn_A 55 NWDLLKDYDVVVIGVSSDD-I----NSHKRFKEKYKLPFILVSDPDKKIRELYGAK 105 (161)
T ss_dssp THHHHHTTCEEEEEEESCC-H----HHHHHHHHHTTCCSEEEECTTSHHHHHTTCC
T ss_pred HHHHHHHcCCEEEEEeCCC-H----HHHHHHHHHhCCCceEEECCcHHHHHHcCCC
Confidence 3344444457888888873 3 34567778899987755 4557899988875
No 92
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=43.00 E-value=50 Score=22.21 Aligned_cols=53 Identities=9% Similarity=0.164 Sum_probs=31.3
Q ss_pred hHHHHhHhcCCCEEEeCCHHHHH--------------HHhCCCcceEEEEEEeC-CCCChHHHHHHHHHHHH
Q psy1295 77 HLPLLCEDKNVPYVFVRSKQALG--------------RACGVSRPIIACSVTVD-EGSQLKPQIQAIQQQIE 133 (137)
Q Consensus 77 ~i~~lc~~~~IP~i~~~tk~eLG--------------~a~G~~~~v~~~ai~~~-~~s~~~~~i~e~~~~~~ 133 (137)
.+...+...++|++.+++|.+|- +..|.+ ..-+-.. .+..+.++++.+.+.+.
T Consensus 114 ~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~----~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 114 LILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP----YIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC----EEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe----EEEeccCCCCCCHHHHHHHHHHHHh
Confidence 34444556789999887776542 223322 2223233 45678888888877765
No 93
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=42.19 E-value=63 Score=22.06 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCcccEEEEecCCCh-------hhHHHhHHHHhHhcCCCEEEeC
Q psy1295 48 ANEATKTLNRGLSEFIVLAADAEP-------LEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 48 ~~~v~kaI~k~kaklViiA~D~~~-------~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
.++.++.+++..++++++..-..+ ..+-..+..+|++++++++-..
T Consensus 88 l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~ 140 (190)
T 1ivn_A 88 LRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFF 140 (190)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEECCT
T ss_pred HHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEccH
Confidence 344455555545677666431221 1255668899999999998764
No 94
>3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli}
Probab=42.14 E-value=1e+02 Score=23.36 Aligned_cols=63 Identities=10% Similarity=0.006 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHcCc---ccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 30 KILSLVQQALNYKQLRKGANEATKTLNRGL---SEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 30 kl~~lL~~A~~ag~lv~G~~~v~kaI~k~k---aklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
.+.+-++..+++|--+....+...++..++ -+.|+|.=|-.+.+....+..+.+++++|..++
T Consensus 32 ~f~~ql~~L~~~gy~~vs~~~~~~~~~~~~~~~~~~v~lTfDDg~~~~~~~~~~~l~~~~~~atfF 97 (268)
T 3vus_A 32 ALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSFYTRVFPILQAFQWPAVWA 97 (268)
T ss_dssp HHHHHHHHHHHTTCEECCHHHHHHHHTTSSCCCTTEEEEEEEETBHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHCCCEEecHHHHHHHHhcCCCCCCCEEEEEEeCCchhHHHHHHHHHHHcCCCEEEE
Confidence 345555556778887888999999998875 578888877777666667778889999997754
No 95
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=42.09 E-value=69 Score=20.97 Aligned_cols=41 Identities=10% Similarity=-0.023 Sum_probs=28.7
Q ss_pred HHHHHHHHcCcc--cEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 49 NEATKTLNRGLS--EFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 49 ~~v~kaI~k~ka--klViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
-.+.++|++-+. .|.|++.|-. ....|+.+|++.|-.+...
T Consensus 41 l~tkkaL~~l~~Ge~L~Vl~dd~~---a~~dI~~~~~~~G~~v~~~ 83 (98)
T 1jdq_A 41 VETKRALQNMKPGEILEVWIDYPM---SKERIPETVKKLGHEVLEI 83 (98)
T ss_dssp HHHHHHHHTCCTTCEEEEEESSCT---HHHHHHHHHHHSSCCEEEE
T ss_pred HHHHHHHHhCCCCCEEEEEECCcc---HHHHHHHHHHHCCCEEEEE
Confidence 345566665332 3788888853 4689999999999887654
No 96
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=42.06 E-value=41 Score=22.36 Aligned_cols=53 Identities=13% Similarity=0.254 Sum_probs=30.7
Q ss_pred hHhcCCCEEEeCCHHHHHHH----------hCCCcceEEEEEEeCCCCChHHHHHHHHHHHHH
Q psy1295 82 CEDKNVPYVFVRSKQALGRA----------CGVSRPIIACSVTVDEGSQLKPQIQAIQQQIER 134 (137)
Q Consensus 82 c~~~~IP~i~~~tk~eLG~a----------~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~~ 134 (137)
....++|++.+.+|.+|-.. ......+...-+-...+..+.++++.+...+.+
T Consensus 110 ~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 110 KDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp HTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 34568999999888776421 111122222223234456788888887776654
No 97
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=41.93 E-value=1.1e+02 Score=22.89 Aligned_cols=78 Identities=18% Similarity=0.165 Sum_probs=41.7
Q ss_pred HHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhCCC---------cceEEEEEEeCCCCChHHHH
Q psy1295 55 LNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACGVS---------RPIIACSVTVDEGSQLKPQI 125 (137)
Q Consensus 55 I~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G~~---------~~v~~~ai~~~~~s~~~~~i 125 (137)
+....+..+++.-|++..+-...+.....+.++|++.+.+|.++-..-+.. .++.+.-+-...+..+.+++
T Consensus 79 ~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~ 158 (258)
T 3a1s_A 79 LLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELK 158 (258)
T ss_dssp HHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHH
T ss_pred HhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHH
Confidence 333566677766666543222334444556789999888887765432221 11112223334455666666
Q ss_pred HHHHHHH
Q psy1295 126 QAIQQQI 132 (137)
Q Consensus 126 ~e~~~~~ 132 (137)
+.+....
T Consensus 159 ~~i~~~~ 165 (258)
T 3a1s_A 159 EKIVEYA 165 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6665543
No 98
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=41.87 E-value=41 Score=23.04 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=43.0
Q ss_pred ccccHHHHHHHHH---c---CcccEEEEecCCChhhHH----HhHHHHhHhcCCCEEEeC----CHHHHHHHhCCCcc
Q psy1295 44 LRKGANEATKTLN---R---GLSEFIVLAADAEPLEIV----LHLPLLCEDKNVPYVFVR----SKQALGRACGVSRP 107 (137)
Q Consensus 44 lv~G~~~v~kaI~---k---~kaklViiA~D~~~~~~~----~~i~~lc~~~~IP~i~~~----tk~eLG~a~G~~~~ 107 (137)
+-.|.....+.+. + +..+.+|+-.|..+.+-. ......+++.+|+++.++ +..+|.+..+.+.+
T Consensus 85 ~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~igvg~~~~~~L~~iA~~~~~ 162 (185)
T 3n2n_F 85 MHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVKDFNETQLARIADSKDH 162 (185)
T ss_dssp HHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTEEEEEEECSSCCHHHHTTTSSSGGG
T ss_pred HHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcccchHHHHHHHHHCCCEEEEEEeccCCHHHHHHHhCCCCC
Confidence 5666777776662 1 245788998898774322 456677788899987653 56778777765544
No 99
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=41.83 E-value=11 Score=27.62 Aligned_cols=45 Identities=11% Similarity=0.266 Sum_probs=29.4
Q ss_pred CccccccccCCCCCCC-------cccCCCC-ChHHHHHHHHHHHHHHHcCCcc
Q psy1295 1 MSTFLYFQTNEEPAVN-------PKAYPLA-DTALTTKILSLVQQALNYKQLR 45 (137)
Q Consensus 1 ~~~~~~~~~~~~~~~~-------~~~~p~a-~~~~~~kl~~lL~~A~~ag~lv 45 (137)
|-||+.|.+++...+. -+...+. .+++.+.|..+++-|++-+.|+
T Consensus 96 iPT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a~~g~~~v 148 (160)
T 2av4_A 96 PVSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGARKGRGLV 148 (160)
T ss_dssp SEEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHHHTTCSEE
T ss_pred CCEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHhhcCCeEE
Confidence 3578777766664322 4445555 5688888888888887655444
No 100
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=41.49 E-value=34 Score=26.89 Aligned_cols=68 Identities=7% Similarity=0.093 Sum_probs=41.1
Q ss_pred CCChhhHHHhHHHHhHhcCCCEEEeC--CHHHHHHHhCCCcceEEEEEEeC---------CCCChHHHHHHHHHHHHHhh
Q psy1295 68 DAEPLEIVLHLPLLCEDKNVPYVFVR--SKQALGRACGVSRPIIACSVTVD---------EGSQLKPQIQAIQQQIERLL 136 (137)
Q Consensus 68 D~~~~~~~~~i~~lc~~~~IP~i~~~--tk~eLG~a~G~~~~v~~~ai~~~---------~~s~~~~~i~e~~~~~~~~~ 136 (137)
+.+|. -...+..++++++|+++++. ....+.+.+-++.++.++.+..- .+..+.+.+++..+.+.+-|
T Consensus 222 eps~~-~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~e~g~~v~~l~~l~~~~~~~~~~~~~Y~~~m~~n~~~l~~aL 300 (312)
T 2o1e_A 222 EPSAA-SLAKLKTYAKEHNVKVIYFEEIASSKVADTLASEIGAKTEVLNTLEGLSKEEQDKGLGYIDIMKQNLDALKDSL 300 (312)
T ss_dssp CCCHH-HHHHHHHHTTSSCCCEEECSSCCCHHHHHHHHHHTCCEEECCCCTTCCCHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCcEEEeccccccccccCCcccCHHHHHHHHHHHHHHHh
Confidence 34555 57788899999999999874 22333333333323333323211 13478888988888887644
No 101
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}
Probab=40.99 E-value=24 Score=27.40 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=36.0
Q ss_pred CCCCCcccCCCCC-hHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEec
Q psy1295 12 EPAVNPKAYPLAD-TALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAA 67 (137)
Q Consensus 12 ~~~~~~~~~p~a~-~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~ 67 (137)
...-.|+..|+.+ +++...+.++.+.|+.+-.+..=..++...+++ .+.+.||.
T Consensus 51 ~~~ri~F~~~~~~~~~~r~~lV~m~~~A~~~l~l~~l~~ei~~ll~~--~~~~~LAT 105 (259)
T 3gas_A 51 QTLRIEFNHEVKDPKDYKNATIELCQSVEKTHDLKGVEEEVKAFKEG--FDSVCLAT 105 (259)
T ss_dssp EEEEEECSSCCCCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSEEEEEE
T ss_pred eEEEEeCCCcCCCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHh--CCEEEEEe
Confidence 3445899999964 599999999999999886654333344444443 34555554
No 102
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=40.77 E-value=36 Score=23.67 Aligned_cols=74 Identities=8% Similarity=0.081 Sum_probs=46.4
Q ss_pred CcccEEEEecCCChh-hH--HHhHHHHhHhcCCCEEEe--CC-------HHHHHHHhCCCcceEEEEEEeCCCCChHHHH
Q psy1295 58 GLSEFIVLAADAEPL-EI--VLHLPLLCEDKNVPYVFV--RS-------KQALGRACGVSRPIIACSVTVDEGSQLKPQI 125 (137)
Q Consensus 58 ~kaklViiA~D~~~~-~~--~~~i~~lc~~~~IP~i~~--~t-------k~eLG~a~G~~~~v~~~ai~~~~~s~~~~~i 125 (137)
+.-+.||+-.|..+. +- .......++..+|+++.+ ++ ..+|-...+...... .....+.+++.+.+
T Consensus 109 ~~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~--~~~~~~~~~l~~~~ 186 (198)
T 1n3y_A 109 DAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEH--IFKVEDFDALKDIQ 186 (198)
T ss_dssp TSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGG--EEEESSGGGGGGGH
T ss_pred CCceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHcCCCccc--EEEeCCHHHHHHHH
Confidence 456788888887553 11 234456668899998765 32 467877777653221 13345556777777
Q ss_pred HHHHHHHH
Q psy1295 126 QAIQQQIE 133 (137)
Q Consensus 126 ~e~~~~~~ 133 (137)
+++.++|-
T Consensus 187 ~~i~~~ic 194 (198)
T 1n3y_A 187 NQLKEKIF 194 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhee
Confidence 77777653
No 103
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=40.55 E-value=28 Score=24.30 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=51.4
Q ss_pred cHHHHHHHHHc-----CcccEEEEecCCChh-hHHHhHHHHhHhcCCCEE--EeCCHHHHHHHhCCCcceEEEEEEeCCC
Q psy1295 47 GANEATKTLNR-----GLSEFIVLAADAEPL-EIVLHLPLLCEDKNVPYV--FVRSKQALGRACGVSRPIIACSVTVDEG 118 (137)
Q Consensus 47 G~~~v~kaI~k-----~kaklViiA~D~~~~-~~~~~i~~lc~~~~IP~i--~~~tk~eLG~a~G~~~~v~~~ai~~~~~ 118 (137)
+...+.+.+++ ...++-++..-++++ .....+...+++.++|+. .++....+.++......+. . ...
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~~~l~~~~~~vl~~~Ip~~~~~~~a~~~g~~v~----~-~~~ 187 (206)
T 4dzz_A 113 SAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVF----E-SSD 187 (206)
T ss_dssp HHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHHHHHHHHHTCCBCSSCCBCCHHHHHHHHTTCCGG----G-SSC
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHHHHHHHHcCCceeeccccccHHHHHHHHcCCCcc----c-CCc
Confidence 45555555543 234445666666543 123456677777888876 5677778888765544442 2 445
Q ss_pred CChHHHHHHHHHHHHHhh
Q psy1295 119 SQLKPQIQAIQQQIERLL 136 (137)
Q Consensus 119 s~~~~~i~e~~~~~~~~~ 136 (137)
+.....++.+.++|.+.+
T Consensus 188 s~~~~~~~~la~~i~~~l 205 (206)
T 4dzz_A 188 GAAKGEIEILTKEIVRIF 205 (206)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 667777777777776654
No 104
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=40.32 E-value=33 Score=24.98 Aligned_cols=49 Identities=8% Similarity=0.190 Sum_probs=37.2
Q ss_pred cCCccccHHHH-HHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 41 YKQLRKGANEA-TKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 41 ag~lv~G~~~v-~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
+.+++. .++. .+.|++-|--++++-. +...+-.+.+..+++. +||++..
T Consensus 18 ~a~~~~-i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT 67 (174)
T 1ytl_A 18 MATLLE-KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVAT 67 (174)
T ss_dssp CCEECC-CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEE
T ss_pred cceecc-HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEc
Confidence 334555 6776 8888888777777777 7644467889999999 9999976
No 105
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=40.06 E-value=36 Score=23.84 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=28.9
Q ss_pred cCCCEEEeCCHHHHHH----------HhCCCcceEEEEEEeCCCCChHHHHHHHHHHHHH
Q psy1295 85 KNVPYVFVRSKQALGR----------ACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIER 134 (137)
Q Consensus 85 ~~IP~i~~~tk~eLG~----------a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~~ 134 (137)
.++|++.+++|.+|-. .+.....+...-+-...+..+.++++.+..++.+
T Consensus 129 ~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 129 HDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp SCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 5899998887766531 1111112222233334456888888888877643
No 106
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=40.01 E-value=42 Score=23.65 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=54.8
Q ss_pred ccccHHHHHHHH-H------cCcccEEEEecCCChhhH--HHhHHHHhHhcCCCEEEeCC--------------HHHHHH
Q psy1295 44 LRKGANEATKTL-N------RGLSEFIVLAADAEPLEI--VLHLPLLCEDKNVPYVFVRS--------------KQALGR 100 (137)
Q Consensus 44 lv~G~~~v~kaI-~------k~kaklViiA~D~~~~~~--~~~i~~lc~~~~IP~i~~~t--------------k~eLG~ 100 (137)
+-.|...+.+.+ . .+..+.+|+-.|..+.+- .......++..+|++..++- ..+|-.
T Consensus 86 ~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~~~~L~~ 165 (200)
T 1v7p_C 86 TFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKA 165 (200)
T ss_dssp HHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHHHHHCCCEEEEEEecccccccccchhhHHHHHHH
Confidence 455666666543 1 134678888888765421 23345566788998876532 467888
Q ss_pred HhCCCcceEEEEEEeCCCCChHHHHHHHHHHHH
Q psy1295 101 ACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIE 133 (137)
Q Consensus 101 a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~ 133 (137)
..+.+..-. .....+.+++.+.++++.++|-
T Consensus 166 iA~~~~g~~--~~~~~~~~~l~~i~~~i~~~ic 196 (200)
T 1v7p_C 166 IASIPTERY--FFNVSDEAALLEKAGTLGEQIF 196 (200)
T ss_dssp HSCSSHHHH--EEEESSSGGGHHHHHHHHHHHH
T ss_pred HhCCccHhc--EEEcCCHHHHHHHHHHHHhhhc
Confidence 777653211 1334567888888888887764
No 107
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=39.47 E-value=16 Score=24.61 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=21.8
Q ss_pred EEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 63 IVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 63 ViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
+|+|+=.+. +..+|..+++++|||++.-.
T Consensus 19 ~VvAKG~~~--~A~~I~e~A~e~gVPi~e~~ 47 (98)
T 3c01_E 19 MISVYETNQ--RALAVRAYAEKVGVPVIVDI 47 (98)
T ss_dssp EEEEEEEHH--HHHHHHHHHHHHTCCEEECH
T ss_pred EEEEEeCcH--HHHHHHHHHHHcCCCeecCH
Confidence 455554433 78999999999999987643
No 108
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=39.44 E-value=0.88 Score=32.02 Aligned_cols=84 Identities=14% Similarity=0.247 Sum_probs=45.3
Q ss_pred ccccccCCCCC-CCcccCCCCChHHHHHHHHHHHH-------HHHcCCccccHHHHHHHHH--cCcccEEEEecCCChhh
Q psy1295 4 FLYFQTNEEPA-VNPKAYPLADTALTTKILSLVQQ-------ALNYKQLRKGANEATKTLN--RGLSEFIVLAADAEPLE 73 (137)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~p~a~~~~~~kl~~lL~~-------A~~ag~lv~G~~~v~kaI~--k~kaklViiA~D~~~~~ 73 (137)
-||||.-.+.. ++-+..|--.+++.+.|.+.-+. ++..|+ -.|........+ ..|+++-++..|..-..
T Consensus 14 ~~~~~~~~~~~lI~aIIrP~kld~V~daL~~~~gi~G~TvseV~G~Gr-qkg~~S~~E~yrG~epKvkiEivv~d~~ve~ 92 (120)
T 3ce8_A 14 NLYFQGMSTEQLLVLIAQNDIKDDIVDTLIELEFLSGFSLGNICGFSR-EHSHFNIKEQVEGYREFCKFEIMHPAAQQAA 92 (120)
T ss_dssp ------CCSEEEEEEEEEGGGHHHHHHHHTTCTTCCCCEEEEEEEEEC-C-----------EEEEEEEEEEEEEGGGHHH
T ss_pred ceeecCCccceEEEEEeCHHHHHHHHHHHHhCCCCCcEEEEeeEEeCC-CCCCCCceeEEecCCceEEEEEEECHHHHHH
Confidence 48898765544 78888888777777776665221 011111 112211111111 16788888888887777
Q ss_pred HHHhHHHHhHhcCCC
Q psy1295 74 IVLHLPLLCEDKNVP 88 (137)
Q Consensus 74 ~~~~i~~lc~~~~IP 88 (137)
+...|...|..-+|.
T Consensus 93 vv~aI~~~a~tg~IK 107 (120)
T 3ce8_A 93 LLTALALVCKHNPCR 107 (120)
T ss_dssp HHHHHHHHTTTSCCE
T ss_pred HHHHHHHHcCCCCEE
Confidence 899999888888883
No 109
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=38.95 E-value=61 Score=25.14 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=42.5
Q ss_pred CChhhHHHhHHHHhHhcCCCEEEeC----CH--HHHHHHhCCCcceEEEEEEe------CCCCChHHHHHHHHHHHHHhh
Q psy1295 69 AEPLEIVLHLPLLCEDKNVPYVFVR----SK--QALGRACGVSRPIIACSVTV------DEGSQLKPQIQAIQQQIERLL 136 (137)
Q Consensus 69 ~~~~~~~~~i~~lc~~~~IP~i~~~----tk--~eLG~a~G~~~~v~~~ai~~------~~~s~~~~~i~e~~~~~~~~~ 136 (137)
.+|. -...+..++++++|+++++. ++ +.|.+..|.+.. ...+.. ..+..+.++++...+.|.+-|
T Consensus 216 ps~~-~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~--~~~~~~~l~~~~~~~~~Y~~~m~~n~~~l~~aL 292 (294)
T 3hh8_A 216 GTPD-QISSLIEKLKVIKPSALFVESSVDRRPMETVSKDSGIPIY--SEIFTDSIAKKGKPGDSYYAMMKWNLDKISEGL 292 (294)
T ss_dssp CCHH-HHHHHHHHHHHSCCSCEEEETTSCSHHHHHHHHHHCCCEE--EEECSSSCCCTTSTTCSHHHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHhCCcEE--eeecCcccCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 3555 67889999999999999873 22 356666676521 111111 123578899999888887644
No 110
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=38.83 E-value=76 Score=26.84 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHcCCc---cccHHHHHHHH-------HcCcccEEEEecCCChhh-------------------------
Q psy1295 29 TKILSLVQQALNYKQL---RKGANEATKTL-------NRGLSEFIVLAADAEPLE------------------------- 73 (137)
Q Consensus 29 ~kl~~lL~~A~~ag~l---v~G~~~v~kaI-------~k~kaklViiA~D~~~~~------------------------- 73 (137)
.++.+.++..+-+|.+ =.|......++ .++.-+++|++.|++++.
T Consensus 210 ~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~a~rllV~~TDa~fH~agDgkL~GIv~PNDg~CHL~~~~Yt 289 (454)
T 3vi3_B 210 EVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLENNMYT 289 (454)
T ss_dssp HHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEEESSCBCCTTTTGGGTCCSCCCCCCCEETTEEC
T ss_pred HHHHHHHhhccccCCCcCCchhHHHHHHHhccccccCCccceEEEEEECCCCcCcCCCccccceecCCCCccEeCCCccc
Confidence 3445555544444432 12344444443 223678999999998751
Q ss_pred --------HHHhHHHHhHhcCCCEEEeCCH------HHHHHHhCCCcceEEEEEEeCCCCChHHHHHHHHHHHH
Q psy1295 74 --------IVLHLPLLCEDKNVPYVFVRSK------QALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIE 133 (137)
Q Consensus 74 --------~~~~i~~lc~~~~IP~i~~~tk------~eLG~a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~ 133 (137)
-...+.....+++|-.|+.-++ ++|...++. +.++....+.+.+.++|.+...+|.
T Consensus 290 ~s~~~DYPSv~ql~~~l~e~nI~~IFAVt~~~~~~Y~~L~~~ip~----s~vg~Ls~dSsNiv~LI~~aY~~i~ 359 (454)
T 3vi3_B 290 MSHYYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPK----SAVGTLSANSSNVIQLIIDAYNSLS 359 (454)
T ss_dssp CTTTSCCCCHHHHHHHHHHTTEEEEEEEEGGGHHHHHHHHHHSTT----EEEEEECTTCTTHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHhcCCcEEEEEcCccchHHHHHHHhCCC----ceeeEccccchhHHHHHHHHHHHhh
Confidence 1556777778889887776444 467777765 3457777888899999998877764
No 111
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=38.80 E-value=30 Score=23.85 Aligned_cols=76 Identities=11% Similarity=0.028 Sum_probs=39.4
Q ss_pred cccEEEEecCCChhhHHHhHHHHhH---h---cCCCEEEeCCHHHHHHH----------hCCCcceEEEEEEeCCCCChH
Q psy1295 59 LSEFIVLAADAEPLEIVLHLPLLCE---D---KNVPYVFVRSKQALGRA----------CGVSRPIIACSVTVDEGSQLK 122 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~~lc~---~---~~IP~i~~~tk~eLG~a----------~G~~~~v~~~ai~~~~~s~~~ 122 (137)
.+..+++.-|++..+....+..+.+ . .++|++.+++|.+|-.. +....++...-+-...+..+.
T Consensus 95 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 95 GAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVR 174 (191)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 3555666666653323333333222 2 58999988887765321 111112222222234456788
Q ss_pred HHHHHHHHHHHH
Q psy1295 123 PQIQAIQQQIER 134 (137)
Q Consensus 123 ~~i~e~~~~~~~ 134 (137)
++++.+...+.+
T Consensus 175 ~l~~~l~~~i~~ 186 (191)
T 3dz8_A 175 QAFERLVDAICD 186 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887777654
No 112
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=38.45 E-value=49 Score=24.67 Aligned_cols=42 Identities=0% Similarity=-0.141 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCc--ccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 48 ANEATKTLNRGL--SEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 48 ~~~v~kaI~k~k--aklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
...+.+++++++ ..++.+-+|-+.. ....+|+++|||+..+.
T Consensus 14 l~ali~~~~~~~~~~~i~~Vis~~~~~----~~~~~A~~~gIp~~~~~ 57 (212)
T 1jkx_A 14 LQAIIDACKTNKIKGTVRAVFSNKADA----FGLERARQAGIATHTLI 57 (212)
T ss_dssp HHHHHHHHHTTSSSSEEEEEEESCTTC----HHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHcCCCCceEEEEEeCCCch----HHHHHHHHcCCcEEEeC
Confidence 455666777774 4566565554322 24688999999998754
No 113
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=38.41 E-value=22 Score=27.27 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=26.3
Q ss_pred HHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 51 ATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 51 v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
..+.+.+..++.+++|.|.... . .+..+-+..+||++-+
T Consensus 66 ~~~~L~~~g~d~iviaCNTas~-~--~l~~lr~~~~iPvigi 104 (273)
T 2oho_A 66 LVNFLLTQNVKMIVFACNTATA-V--AWEEVKAALDIPVLGV 104 (273)
T ss_dssp HHHHHHTTTCSEEEECCHHHHH-H--HHHHHHHHCSSCEEES
T ss_pred HHHHHHHCCCCEEEEeCchHhH-H--HHHHHHHhCCCCEEec
Confidence 3344556679999999987542 2 2455666779998874
No 114
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=38.39 E-value=93 Score=21.85 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=28.3
Q ss_pred HHHHHHHHcCcccEEEEec-CCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 49 NEATKTLNRGLSEFIVLAA-DAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~-D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
.++.+.|++-+ +-||++. -+...+..+.+..+++..++|++...
T Consensus 25 ~~aa~~L~~Ak-rPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~ 69 (170)
T 3cf4_G 25 EMAAKIISKAK-RPLLMVGTLALDPELLDRVVKISKAANIPIAATG 69 (170)
T ss_dssp HHHHHHHHHCS-SEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECT
T ss_pred HHHHHHHHcCC-CCEEEECCCccchhHHHHHHHHHHHhCCCEEECc
Confidence 44455554444 3444444 34433467889999999999998753
No 115
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=38.19 E-value=30 Score=23.91 Aligned_cols=49 Identities=6% Similarity=0.085 Sum_probs=26.5
Q ss_pred cCCCEEEeCCHHHHHHHhC----------CCcceEEEEEEe-CCCCChHHHHHHHHHHHH
Q psy1295 85 KNVPYVFVRSKQALGRACG----------VSRPIIACSVTV-DEGSQLKPQIQAIQQQIE 133 (137)
Q Consensus 85 ~~IP~i~~~tk~eLG~a~G----------~~~~v~~~ai~~-~~~s~~~~~i~e~~~~~~ 133 (137)
.++|++.+++|.+|-..-. ...++...-+-. ..+..+.++++.+..++.
T Consensus 126 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 126 RSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 6899999998887742110 111222222222 233467777777766653
No 116
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=38.18 E-value=23 Score=27.44 Aligned_cols=44 Identities=5% Similarity=0.041 Sum_probs=30.0
Q ss_pred HHHHHHHHcCcccEEEEec--CCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 49 NEATKTLNRGLSEFIVLAA--DAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~--D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
.++.+++.+.+.++|++.. +..+. -.+.+.++|+++|++++.-.
T Consensus 162 ~~l~~~i~~~~~~~v~~~~~~~~~~~-~l~~i~~l~~~~~~~li~De 207 (425)
T 3ecd_A 162 DQVEALAQQHKPSLIIAGFSAYPRKL-DFARFRAIADSVGAKLMVDM 207 (425)
T ss_dssp HHHHHHHHHHCCSEEEEECSCCCSCC-CHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHhhcCCcEEEEccccCCCcC-CHHHHHHHHHHcCCEEEEEC
Confidence 4555566555678888862 32333 45789999999999887544
No 117
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=38.01 E-value=59 Score=20.76 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=27.6
Q ss_pred HHHHHHcC---cccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 51 ATKTLNRG---LSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 51 v~kaI~k~---kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
+.+++++- --.+.|++.| |. ....++.+|+..|-.+....
T Consensus 18 ~kkal~~l~~~G~~L~V~~dd--~~-a~~dI~~~~~~~G~~v~~~~ 60 (87)
T 3hz7_A 18 AKKALAELGEAGGVVTVLVDN--DI-SRQNLQKMAEGMGYQSEYLE 60 (87)
T ss_dssp HHHHHHTTGGGCCEEEEEESS--HH-HHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHhccCCCCEEEEEECC--cc-HHHHHHHHHHHCCCEEEEEE
Confidence 44555432 1357777777 43 67899999999998886543
No 118
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=37.78 E-value=49 Score=25.41 Aligned_cols=44 Identities=5% Similarity=0.027 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCcccEEEEecCCCh------hhHHHhHHHHhHhcCCCEEE
Q psy1295 48 ANEATKTLNRGLSEFIVLAADAEP------LEIVLHLPLLCEDKNVPYVF 91 (137)
Q Consensus 48 ~~~v~kaI~k~kaklViiA~D~~~------~~~~~~i~~lc~~~~IP~i~ 91 (137)
..++.+++++.+.++|++..=-+| .+..+.+..+|++++++++.
T Consensus 153 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (399)
T 1c7n_A 153 FQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWS 202 (399)
T ss_dssp HHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEE
T ss_pred HHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 455666676567888887532222 23588899999999998875
No 119
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=37.52 E-value=18 Score=24.31 Aligned_cols=29 Identities=14% Similarity=0.047 Sum_probs=21.3
Q ss_pred EEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 63 IVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 63 ViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
+++|+=.+ .+..++...++++|||++.-.
T Consensus 34 ~VvAKG~~--~~A~~I~~~A~e~gVPi~e~~ 62 (97)
T 3t7y_A 34 WIIAMGVN--LRAKRIIAEAEKYGVPIMRNV 62 (97)
T ss_dssp EEEEEEEH--HHHHHHHHHHHHHTCCEEECH
T ss_pred EEEEEeCc--HHHHHHHHHHHHcCCeEEECH
Confidence 44444433 378999999999999987643
No 120
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=37.40 E-value=94 Score=21.00 Aligned_cols=74 Identities=9% Similarity=0.041 Sum_probs=41.2
Q ss_pred ccEEEEecCCChh--hHHHhHHHHhHhcCCCEEEeCCHHHHH-------------HHhCCCcceEEEEEEeCCCCChHHH
Q psy1295 60 SEFIVLAADAEPL--EIVLHLPLLCEDKNVPYVFVRSKQALG-------------RACGVSRPIIACSVTVDEGSQLKPQ 124 (137)
Q Consensus 60 aklViiA~D~~~~--~~~~~i~~lc~~~~IP~i~~~tk~eLG-------------~a~G~~~~v~~~ai~~~~~s~~~~~ 124 (137)
+..+++.-|++.. .....+..+....++|++.+.+|.+|- +.++........-+-...+..+.++
T Consensus 106 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 185 (195)
T 1svi_A 106 LKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEA 185 (195)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHH
Confidence 3455555554321 122335566777899999988776542 2244433333333333445677777
Q ss_pred HHHHHHHHH
Q psy1295 125 IQAIQQQIE 133 (137)
Q Consensus 125 i~e~~~~~~ 133 (137)
++.+.+.+.
T Consensus 186 ~~~l~~~l~ 194 (195)
T 1svi_A 186 WGAIKKMIN 194 (195)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 777776653
No 121
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=37.35 E-value=46 Score=25.54 Aligned_cols=44 Identities=16% Similarity=0.281 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCcccEEEEecCCCh------hhHHHhHHHHhHhcCCCEEE
Q psy1295 48 ANEATKTLNRGLSEFIVLAADAEP------LEIVLHLPLLCEDKNVPYVF 91 (137)
Q Consensus 48 ~~~v~kaI~k~kaklViiA~D~~~------~~~~~~i~~lc~~~~IP~i~ 91 (137)
..+..+++++.+.++|++..=-+| .+..+.+..+|+++|++++.
T Consensus 151 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 200 (390)
T 1d2f_A 151 MGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVIS 200 (390)
T ss_dssp HHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 455666676557888887532222 12478899999999998875
No 122
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=37.29 E-value=84 Score=20.37 Aligned_cols=45 Identities=18% Similarity=0.400 Sum_probs=30.8
Q ss_pred CcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe-CCHHHHHHHhCCC
Q psy1295 58 GLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV-RSKQALGRACGVS 105 (137)
Q Consensus 58 ~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~-~tk~eLG~a~G~~ 105 (137)
..+.++.+..|.++ ...+..+++++++++-.. ....++.+..|..
T Consensus 60 ~~~~vv~v~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~ 105 (153)
T 2l5o_A 60 KNFQVLAVAQPIDP---IESVRQYVKDYGLPFTVMYDADKAVGQAFGTQ 105 (153)
T ss_dssp TTEEEEEEECTTSC---HHHHHHHHHHTTCCSEEEECSSCHHHHHHTCC
T ss_pred CCeEEEEEecCCCC---HHHHHHHHHHcCCCceEEcCchHHHHHHcCCC
Confidence 34667777765544 345677788899986543 4567889888875
No 123
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=37.25 E-value=97 Score=21.09 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=29.3
Q ss_pred EEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHH---hCCCcceEEEEEEe
Q psy1295 63 IVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRA---CGVSRPIIACSVTV 115 (137)
Q Consensus 63 ViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a---~G~~~~v~~~ai~~ 115 (137)
||+.-..++. +..++.+.-+++|..+..+-+.++|... +-+++++..+.+.+
T Consensus 4 vivvfstdee-tlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvv 58 (134)
T 2l69_A 4 VIVVFSTDEE-TLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVV 58 (134)
T ss_dssp EEEECCCCHH-HHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred EEEEEeCCHH-HHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEE
Confidence 3333334453 6677777777777777777777666543 23445544444433
No 124
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=37.24 E-value=53 Score=25.57 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=29.7
Q ss_pred HHHHHHHHcCcccEEEEecCCCh------hhHHHhHHHHhHhcCCCEEEe
Q psy1295 49 NEATKTLNRGLSEFIVLAADAEP------LEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~D~~~------~~~~~~i~~lc~~~~IP~i~~ 92 (137)
.++.+++++.+.++|++..=.+| .+-.+.+.++|+++|+.++.-
T Consensus 172 ~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~D 221 (437)
T 3g0t_A 172 EKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIED 221 (437)
T ss_dssp HHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEE
Confidence 44556665677888887432222 224778899999999988753
No 125
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=36.97 E-value=36 Score=23.61 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=21.8
Q ss_pred ccEEEEecCCChh--hHHHhHHHHhHh-----cCCCEEEeCCHHHH
Q psy1295 60 SEFIVLAADAEPL--EIVLHLPLLCED-----KNVPYVFVRSKQAL 98 (137)
Q Consensus 60 aklViiA~D~~~~--~~~~~i~~lc~~-----~~IP~i~~~tk~eL 98 (137)
+..+++.-|++.. +....+..+..+ .++|++.+++|.+|
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl 141 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDG 141 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEecccc
Confidence 3444444444432 244444444433 38999999888774
No 126
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=36.97 E-value=1.5e+02 Score=23.17 Aligned_cols=68 Identities=16% Similarity=0.074 Sum_probs=44.1
Q ss_pred CCChhhHHHhHHHHhHhcCCCEEEeCC--HHHHHHHhCCCcceEEEEEE-eC-------CCCChHHHHHHHHHHHHHhh
Q psy1295 68 DAEPLEIVLHLPLLCEDKNVPYVFVRS--KQALGRACGVSRPIIACSVT-VD-------EGSQLKPQIQAIQQQIERLL 136 (137)
Q Consensus 68 D~~~~~~~~~i~~lc~~~~IP~i~~~t--k~eLG~a~G~~~~v~~~ai~-~~-------~~s~~~~~i~e~~~~~~~~~ 136 (137)
+.+|. -...+..++++++|+++++.+ ..++-+.+-++.++-+..+. .. .+..+.+.++...+.|.+-|
T Consensus 222 ePs~~-~l~~l~~~ik~~~v~~If~e~~~~~k~~~~ia~e~g~~v~~~l~~d~l~~~~~~~~~Y~~~m~~n~~~l~~aL 299 (307)
T 3ujp_A 222 QFTPK-QVQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATGARFGGNLYVDSLSTEEGPVPTFLDLLEYDARVITNGL 299 (307)
T ss_dssp CCCHH-HHHHHHHHHHTTTCSEEEEETTSCSHHHHHTTTTTCCEEEEEECSSCCCCSSSSCSSHHHHHHHHHHHHHTTS
T ss_pred CCCHH-HHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHhCCceeeeeeccCCCCCCCCccCHHHHHHHHHHHHHHHh
Confidence 34565 678899999999999998742 23455555555544432221 11 12478899999988887644
No 127
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=36.85 E-value=73 Score=21.08 Aligned_cols=75 Identities=11% Similarity=0.116 Sum_probs=39.2
Q ss_pred cccEEEEecCCChhhHHHhH-------HHHhH---hcCCCEEEeCCHHHHHHH------------hCCCcceEEEEEEeC
Q psy1295 59 LSEFIVLAADAEPLEIVLHL-------PLLCE---DKNVPYVFVRSKQALGRA------------CGVSRPIIACSVTVD 116 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i-------~~lc~---~~~IP~i~~~tk~eLG~a------------~G~~~~v~~~ai~~~ 116 (137)
.+..+++.-|++..+....+ ...+. ..++|++.+.+|.+|-.. +.........-+-..
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK 160 (182)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTT
T ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecC
Confidence 45566666666543232222 22221 268999999888776211 110111222233334
Q ss_pred CCCChHHHHHHHHHHHH
Q psy1295 117 EGSQLKPQIQAIQQQIE 133 (137)
Q Consensus 117 ~~s~~~~~i~e~~~~~~ 133 (137)
.+..+.++++.+...+.
T Consensus 161 ~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 161 NAINVDTAFEEIARSAL 177 (182)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 45678888888776654
No 128
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=36.61 E-value=48 Score=25.45 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 48 ANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 48 ~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
..++.+.+++++++.||.-...+++ +.+. ++++.|+|++.+.
T Consensus 215 l~~l~~~ik~~~v~~if~e~~~~~~-~~~~---ia~~~g~~v~~l~ 256 (284)
T 3cx3_A 215 LTEIQEFVKTYKVKTIFTESNASSK-VAET---LVKSTGVGLKTLN 256 (284)
T ss_dssp HHHHHHHHHHTTCCCEEECSSSCCH-HHHH---HHSSSSCCEEECC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcH-HHHH---HHHHcCCeEEEec
Confidence 3567778899999999999999887 5544 5899999998764
No 129
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=36.50 E-value=67 Score=24.07 Aligned_cols=47 Identities=19% Similarity=0.046 Sum_probs=31.6
Q ss_pred HHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHH
Q psy1295 55 LNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRA 101 (137)
Q Consensus 55 I~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a 101 (137)
+...++..+++.-|++..+--..+.....+.++|++.+.+|.++-..
T Consensus 79 ~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 79 VIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEH 125 (256)
T ss_dssp HHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHH
T ss_pred HhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCc
Confidence 33356777777777765444455666667778999888888776543
No 130
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=36.33 E-value=28 Score=26.90 Aligned_cols=45 Identities=7% Similarity=-0.055 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCcccEEEEec-CC-ChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 48 ANEATKTLNRGLSEFIVLAA-DA-EPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 48 ~~~v~kaI~k~kaklViiA~-D~-~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
..++.+++.+++.++|++.. +. ... -.+.+..+|+++|++++.-.
T Consensus 158 ~~~l~~~i~~~~~~~v~~~~~~~~~~~-~l~~l~~l~~~~~~~li~De 204 (420)
T 3gbx_A 158 YDEMAKLAKEHKPKMIIGGFSAYSGVV-DWAKMREIADSIGAYLFVDM 204 (420)
T ss_dssp HHHHHHHHHHHCCSEEEECCTTCCSCC-CHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhcCCeEEEEecCccCCcc-CHHHHHHHHHHcCCEEEEEC
Confidence 34566667666688888843 22 122 25688999999999887644
No 131
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=36.28 E-value=64 Score=21.72 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=42.1
Q ss_pred cccEEEEecCCChh--hHHHhHHHHhHhcCCCEEEeCCHHHHH-------------HHhCCCcceEEEEEEeCCCCChHH
Q psy1295 59 LSEFIVLAADAEPL--EIVLHLPLLCEDKNVPYVFVRSKQALG-------------RACGVSRPIIACSVTVDEGSQLKP 123 (137)
Q Consensus 59 kaklViiA~D~~~~--~~~~~i~~lc~~~~IP~i~~~tk~eLG-------------~a~G~~~~v~~~ai~~~~~s~~~~ 123 (137)
.+.+|++.-|++.. .....+..+....++|++.+.+|.+|- ..++........-+-...+..+.+
T Consensus 104 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 183 (195)
T 3pqc_A 104 SLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISE 183 (195)
T ss_dssp TEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHH
T ss_pred CceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 45666666665431 234456667778899999998887652 122221111122222344567777
Q ss_pred HHHHHHHHHH
Q psy1295 124 QIQAIQQQIE 133 (137)
Q Consensus 124 ~i~e~~~~~~ 133 (137)
+++.+.+.+.
T Consensus 184 l~~~l~~~l~ 193 (195)
T 3pqc_A 184 LLDLISTLLK 193 (195)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 7777766654
No 132
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=35.75 E-value=46 Score=26.58 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=28.9
Q ss_pred CcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 58 GLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 58 ~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
....+||.+.|-.+. .+..+.+.|..+++|++..+
T Consensus 207 ~~~DlVvd~~Dn~~~-~r~~ln~~c~~~~~p~i~~~ 241 (353)
T 3h5n_A 207 PEADIWVVSADHPFN-LINWVNKYCVRANQPYINAG 241 (353)
T ss_dssp CCCSEEEECCCCSTT-HHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCEEEEecCChHH-HHHHHHHHHHHhCCCEEEEE
Confidence 356789999987663 67888999999999999764
No 133
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=35.70 E-value=78 Score=19.54 Aligned_cols=28 Identities=14% Similarity=0.376 Sum_probs=16.9
Q ss_pred HhHHHHhHhcCCCEEEeC---C---HHHHHHHhC
Q psy1295 76 LHLPLLCEDKNVPYVFVR---S---KQALGRACG 103 (137)
Q Consensus 76 ~~i~~lc~~~~IP~i~~~---t---k~eLG~a~G 103 (137)
.....+-+.++|||..+. + +++|-+..|
T Consensus 22 ~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g 55 (93)
T 1t1v_A 22 SEVTRILDGKRIQYQLVDISQDNALRDEMRTLAG 55 (93)
T ss_dssp HHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC
Confidence 556666777888876542 2 235555666
No 134
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=35.09 E-value=51 Score=22.23 Aligned_cols=67 Identities=7% Similarity=0.109 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHcCCc----------------cccHHHHHHHHHcCcccEEEEec-C---CChhhHHHhHHHHhHhcC
Q psy1295 27 LTTKILSLVQQALNYKQL----------------RKGANEATKTLNRGLSEFIVLAA-D---AEPLEIVLHLPLLCEDKN 86 (137)
Q Consensus 27 ~~~kl~~lL~~A~~ag~l----------------v~G~~~v~kaI~k~kaklViiA~-D---~~~~~~~~~i~~lc~~~~ 86 (137)
+......+-..|.+.|.- .-|..+.++.+++|++..|++.+ | -+..++...+...++.+|
T Consensus 23 l~~Q~~~l~~~a~~~g~~~~~~~~D~g~Sg~~~~Rp~l~~ll~~~~~g~~d~lvv~~ldRl~R~~~~~~~~~~~~l~~~g 102 (138)
T 3bvp_A 23 IDEQIDRLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQRLINDIENKAFDTVLVYKLDRLSRSVRDTLYLVKDVFTKNK 102 (138)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEETCCSSSSCCHHHHHHHHGGGGTSCSEEEESSHHHHCSCHHHHHHHHHHTTGGGT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHhCCCCEEEEEeCCcccccHHHHHHHHHHHHHHCC
Confidence 555555555556555421 12456667777778777666544 1 122222345666788888
Q ss_pred CCEEEeC
Q psy1295 87 VPYVFVR 93 (137)
Q Consensus 87 IP~i~~~ 93 (137)
|.++.+.
T Consensus 103 v~l~~~~ 109 (138)
T 3bvp_A 103 IDFISLN 109 (138)
T ss_dssp CEEEETT
T ss_pred CEEEEec
Confidence 8877664
No 135
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=34.69 E-value=24 Score=26.78 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=24.3
Q ss_pred cccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHH
Q psy1295 59 LSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALG 99 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG 99 (137)
.+.+||.|.|.++ +-..+-..|+ .+||+..+.+ -+++
T Consensus 91 ~adLVIaAT~d~~--~N~~I~~~ak-~gi~VNvvD~-p~~~ 127 (223)
T 3dfz_A 91 NVFFIVVATNDQA--VNKFVKQHIK-NDQLVNMASS-FSDG 127 (223)
T ss_dssp SCSEEEECCCCTH--HHHHHHHHSC-TTCEEEC------CC
T ss_pred CCCEEEECCCCHH--HHHHHHHHHh-CCCEEEEeCC-cccC
Confidence 4778888887654 6778888898 9999765544 4444
No 136
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=34.66 E-value=87 Score=19.80 Aligned_cols=72 Identities=10% Similarity=0.134 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHcCC---ccccHHHHHHHHHcCcccEEEEecCCCh---hhHHHhHHHHhHhcCCCEEEeCCHHHHH
Q psy1295 26 ALTTKILSLVQQALNYKQ---LRKGANEATKTLNRGLSEFIVLAADAEP---LEIVLHLPLLCEDKNVPYVFVRSKQALG 99 (137)
Q Consensus 26 ~~~~kl~~lL~~A~~ag~---lv~G~~~v~kaI~k~kaklViiA~D~~~---~~~~~~i~~lc~~~~IP~i~~~tk~eLG 99 (137)
.....+..+|.. .|. .+....+..+.+++....+||+--+.+. .++...+.......++|++.+.+..+-.
T Consensus 17 ~~~~~l~~~l~~---~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 93 (140)
T 3grc_A 17 DIARLLNLMLEK---GGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREG 93 (140)
T ss_dssp HHHHHHHHHHHH---TTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHH
T ss_pred HHHHHHHHHHHH---CCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChH
Confidence 334445555543 332 3445678888899999999999755433 2344444443345689998876655443
Q ss_pred H
Q psy1295 100 R 100 (137)
Q Consensus 100 ~ 100 (137)
.
T Consensus 94 ~ 94 (140)
T 3grc_A 94 E 94 (140)
T ss_dssp H
T ss_pred H
Confidence 3
No 137
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=34.46 E-value=31 Score=26.97 Aligned_cols=35 Identities=9% Similarity=0.050 Sum_probs=27.3
Q ss_pred cccEEEEecCCChhhHHHhHHHHhHhc---CCCEEEeCCH
Q psy1295 59 LSEFIVLAADAEPLEIVLHLPLLCEDK---NVPYVFVRSK 95 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~~lc~~~---~IP~i~~~tk 95 (137)
.+.+||.|.| ++. +-..+-..|+++ ++|+..+.+.
T Consensus 106 ~adlViaat~-d~~-~n~~I~~~Ar~~f~~~i~VNvvd~p 143 (274)
T 1kyq_A 106 AWYIIMTCIP-DHP-ESARIYHLCKERFGKQQLVNVADKP 143 (274)
T ss_dssp CEEEEEECCS-CHH-HHHHHHHHHHHHHCTTSEEEETTCG
T ss_pred CeEEEEEcCC-ChH-HHHHHHHHHHHhcCCCcEEEECCCc
Confidence 5788999988 453 678899999999 8988665543
No 138
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=34.16 E-value=96 Score=20.26 Aligned_cols=50 Identities=14% Similarity=0.186 Sum_probs=29.4
Q ss_pred cCCCEEEeCCHHHHHHH----------hCCCcceEEEEEEeCCCCChHHHHHHHHHHHHH
Q psy1295 85 KNVPYVFVRSKQALGRA----------CGVSRPIIACSVTVDEGSQLKPQIQAIQQQIER 134 (137)
Q Consensus 85 ~~IP~i~~~tk~eLG~a----------~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~~ 134 (137)
.++|++.+++|.+|-.. .-...++...-+-...+..+.++++.+..++..
T Consensus 108 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 108 HDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence 48999999888775421 111122222223234456888888888877653
No 139
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=34.01 E-value=1.4e+02 Score=22.22 Aligned_cols=77 Identities=21% Similarity=0.271 Sum_probs=47.3
Q ss_pred HHHHHHHHHHH---H-cC--CccccHHHHHHHHHcC-----cccEEEEecCCChhh--HHHhHHHHhHhcCCCEEEeC--
Q psy1295 29 TKILSLVQQAL---N-YK--QLRKGANEATKTLNRG-----LSEFIVLAADAEPLE--IVLHLPLLCEDKNVPYVFVR-- 93 (137)
Q Consensus 29 ~kl~~lL~~A~---~-ag--~lv~G~~~v~kaI~k~-----kaklViiA~D~~~~~--~~~~i~~lc~~~~IP~i~~~-- 93 (137)
+.+.+.|.... . .| .+-.|.+.+...+... ..+.||+-.|..+.+ -.......++..+|.++.++
T Consensus 84 ~~~~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d~~~~~~~a~~l~~~gi~i~~iGiG 163 (266)
T 4hqo_A 84 RQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIG 163 (266)
T ss_dssp HHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSCHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred HHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 45555555543 2 22 2556677776666542 457899989987642 23345556678899987653
Q ss_pred ---CHHHHHHHhCCC
Q psy1295 94 ---SKQALGRACGVS 105 (137)
Q Consensus 94 ---tk~eLG~a~G~~ 105 (137)
+.+.|-...+.+
T Consensus 164 ~~~~~~~L~~iA~~~ 178 (266)
T 4hqo_A 164 QGINHQFNRLIAGCR 178 (266)
T ss_dssp SSCCHHHHHHHHTCC
T ss_pred cccCHHHHHHhhCCC
Confidence 345567777654
No 140
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=34.00 E-value=39 Score=26.33 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=41.1
Q ss_pred cccccccCCCCCCCcccCCCCChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHh
Q psy1295 3 TFLYFQTNEEPAVNPKAYPLADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLC 82 (137)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~p~a~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc 82 (137)
.|+||.|+.-.+=.+.+ .+++.+.+.+ ..+.+++..+++++||.|.... . -+..+-
T Consensus 51 ~~iy~~D~a~~PYG~ks----~e~i~~~~~~-----------------~~~~L~~~g~d~IVIACNTa~~-~--al~~lr 106 (274)
T 3uhf_A 51 EIIYYGDTARVPYGVKD----KDTIIKFCLE-----------------ALDFFEQFQIDMLIIACNTASA-Y--ALDALR 106 (274)
T ss_dssp EEEEEECTTTCCCTTSC----HHHHHHHHHH-----------------HHHHHTTSCCSEEEECCHHHHH-H--SHHHHH
T ss_pred CEEEEecCCCCCCCCCC----HHHHHHHHHH-----------------HHHHHHHCCCCEEEEeCCChhH-H--HHHHHH
Confidence 47788887665544432 2333333322 3346677789999999997442 2 255666
Q ss_pred HhcCCCEEEe
Q psy1295 83 EDKNVPYVFV 92 (137)
Q Consensus 83 ~~~~IP~i~~ 92 (137)
+..+||++-+
T Consensus 107 ~~~~iPvigi 116 (274)
T 3uhf_A 107 AKAHFPVYGV 116 (274)
T ss_dssp HHCSSCEECS
T ss_pred HhcCCCEEcC
Confidence 7779998854
No 141
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=33.96 E-value=42 Score=22.84 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=36.7
Q ss_pred ccEEEEecCCChhhHHHhHHHH----hH--hcCCCEEEeCCHHHHHH----------HhCCCcceEEEEEEeCCCCChHH
Q psy1295 60 SEFIVLAADAEPLEIVLHLPLL----CE--DKNVPYVFVRSKQALGR----------ACGVSRPIIACSVTVDEGSQLKP 123 (137)
Q Consensus 60 aklViiA~D~~~~~~~~~i~~l----c~--~~~IP~i~~~tk~eLG~----------a~G~~~~v~~~ai~~~~~s~~~~ 123 (137)
+..+++.-|++..+....+..+ .+ ..++|++.+.+|.+|-. .+-....+...-+-...+..+.+
T Consensus 89 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 89 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 168 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 4555555555443232232222 11 23789888877765421 11111112122232344567888
Q ss_pred HHHHHHHHHHH
Q psy1295 124 QIQAIQQQIER 134 (137)
Q Consensus 124 ~i~e~~~~~~~ 134 (137)
+++.+..++.+
T Consensus 169 l~~~l~~~i~~ 179 (196)
T 3tkl_A 169 SFMTMAAEIKK 179 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877777654
No 142
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=33.87 E-value=46 Score=25.09 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=27.8
Q ss_pred cccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 59 LSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
+..+||-|.| +.. .+..+.+.|.++++|++...
T Consensus 118 ~~DvVi~~~d-~~~-~r~~l~~~~~~~~~p~i~~~ 150 (251)
T 1zud_1 118 RADVVLDCTD-NMA-TRQEINAACVALNTPLITAS 150 (251)
T ss_dssp HCSEEEECCS-SHH-HHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEECCC-CHH-HHHHHHHHHHHhCCCEEEEe
Confidence 4789999998 454 78899999999999998854
No 143
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=33.60 E-value=93 Score=19.82 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=27.5
Q ss_pred HHHHHHcCcccEEEE-e-----cCCChhhHHHhHHHHhHhcCCCEEEeC---C---HHHHHHHhCCC
Q psy1295 51 ATKTLNRGLSEFIVL-A-----ADAEPLEIVLHLPLLCEDKNVPYVFVR---S---KQALGRACGVS 105 (137)
Q Consensus 51 v~kaI~k~kaklVii-A-----~D~~~~~~~~~i~~lc~~~~IP~i~~~---t---k~eLG~a~G~~ 105 (137)
+.+.+.+++ +++. . ..|+. =.....+-++++|+|..+. + +.+|.+..|..
T Consensus 8 ~~~~i~~~~--vvvy~~g~~~~~~Cp~---C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~ 69 (109)
T 1wik_A 8 LKVLTNKAS--VMLFMKGNKQEAKCGF---SKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWP 69 (109)
T ss_dssp HHHHHTTSS--EEEEESSTTTCCCSST---HHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCC
T ss_pred HHHHhccCC--EEEEEecCCCCCCCch---HHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCC
Confidence 344555554 4444 3 45543 2345556677899987652 2 23566667754
No 144
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=33.26 E-value=39 Score=25.52 Aligned_cols=70 Identities=19% Similarity=0.201 Sum_probs=46.0
Q ss_pred CcccEEEEecCCChhh---------------------------------HHHhHHHHhHhcCCCEEEeCCHHH------H
Q psy1295 58 GLSEFIVLAADAEPLE---------------------------------IVLHLPLLCEDKNVPYVFVRSKQA------L 98 (137)
Q Consensus 58 ~kaklViiA~D~~~~~---------------------------------~~~~i~~lc~~~~IP~i~~~tk~e------L 98 (137)
+.-+++|+..|++++. ....+.+...+++|+.++.-+... |
T Consensus 103 ~a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~chl~~g~y~~s~~~Dyps~~q~~~~l~~~~i~~ifavt~~~~~~Y~~l 182 (212)
T 2iue_A 103 NGTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLASKLAENNIQPIFVVPSRMVKTYEKL 182 (212)
T ss_dssp SSEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGGGSSCCCCHHHHHHHHHHHTCEEEEEEEHHHHHHHHHH
T ss_pred CccEEEEEECcCCccccCCccccccccCCccccccCCCeeccCcccCCCCHHHHHHHHHhcCCcEEEEEccchhHHHHHH
Confidence 3789999999998752 112355666677898887766643 4
Q ss_pred HHHhCCCcceEEEEEEeCCCCChHHHHHHHHHH
Q psy1295 99 GRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQ 131 (137)
Q Consensus 99 G~a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~ 131 (137)
-..++.. .+.....+.+.+.++|.+...+
T Consensus 183 ~~~i~~s----~v~~L~~dSsni~~li~~~y~~ 211 (212)
T 2iue_A 183 TTFIPKL----TIGELSDDSSNVAQLIRNAYSK 211 (212)
T ss_dssp HHHSTTC----EEEEESSCCHHHHHHHHHHHHT
T ss_pred HHHcccc----eeeeecCCcHHHHHHHHHHHhh
Confidence 4445422 3456666677888888876554
No 145
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=33.18 E-value=28 Score=24.77 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=21.1
Q ss_pred EEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 63 IVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 63 ViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
+|+|.=.+ .+...|..+|+++|||++.-.
T Consensus 73 ~VvAKG~g--~~A~~I~e~A~e~gVPi~e~~ 101 (137)
T 3bzs_A 73 LVIETGKD--AKALQIIKLAELYDIPVIEDI 101 (137)
T ss_dssp EEEEEEET--HHHHHHHHHHHHHTCCEEECH
T ss_pred EEEEEeCC--HHHHHHHHHHHHcCCCEEeCH
Confidence 34444333 378999999999999997653
No 146
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=33.11 E-value=75 Score=21.38 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=28.6
Q ss_pred HHHHHHcCcccEEEEecCCC----h---hhHHHhHHHHhHhcCCCEEEeC
Q psy1295 51 ATKTLNRGLSEFIVLAADAE----P---LEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 51 v~kaI~k~kaklViiA~D~~----~---~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
.++.+++..++++++.--.. + ..+...+..+|+++++|++-..
T Consensus 95 ~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd~~ 144 (185)
T 3hp4_A 95 LVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMNFF 144 (185)
T ss_dssp HHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEECCT
T ss_pred HHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEcch
Confidence 45556666677777753222 2 1356778899999999998664
No 147
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=32.79 E-value=1.2e+02 Score=25.63 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=33.6
Q ss_pred HHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCH
Q psy1295 49 NEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSK 95 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk 95 (137)
-+|.++|+--..-++|+...-...--+..+-..|.++++|.+.+-+|
T Consensus 115 ~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK 161 (548)
T 3vqt_A 115 EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNK 161 (548)
T ss_dssp HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEec
Confidence 47889998876666666554444336778889999999998755433
No 148
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=32.76 E-value=29 Score=24.22 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=21.4
Q ss_pred EEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 63 IVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 63 ViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
+++|.=.+. +...|..+++++|||++.-.
T Consensus 63 ~VvAKG~~~--~A~~I~~~A~e~~VPi~e~~ 91 (123)
T 2jli_A 63 LVTFKYTDA--QVQTVRKIAEEEGVPILQRI 91 (123)
T ss_dssp EEEEEEETH--HHHHHHHHHHHHTCCEEECH
T ss_pred EEEEEeCCH--HHHHHHHHHHHcCCCEEeCH
Confidence 444444333 78999999999999997653
No 149
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=32.62 E-value=71 Score=24.22 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCcccEEEEecCCChh------hHHHhHHHHhHhcCCCEEEe
Q psy1295 48 ANEATKTLNRGLSEFIVLAADAEPL------EIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 48 ~~~v~kaI~k~kaklViiA~D~~~~------~~~~~i~~lc~~~~IP~i~~ 92 (137)
..++.+++++.+.++|++..=-+|. +-.+.+.++|+++|++++.-
T Consensus 149 ~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 199 (391)
T 3dzz_A 149 WADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISD 199 (391)
T ss_dssp HHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEe
Confidence 4566777766778888875532221 24778889999999988753
No 150
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=32.38 E-value=50 Score=25.53 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=41.8
Q ss_pred cccccccCCCCCCCcccCCCCChHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHh
Q psy1295 3 TFLYFQTNEEPAVNPKAYPLADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLC 82 (137)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~p~a~~~~~~kl~~lL~~A~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc 82 (137)
.|+||-|+.-.+-.+ ...+++.+... +..+.+.+..++++++|.|.... ..+..+-
T Consensus 32 ~~iy~~D~a~~PYG~----ks~~~i~~~~~-----------------~~~~~L~~~g~~~IVIACNTa~~---~al~~lr 87 (269)
T 3ist_A 32 QVYYLGDTARCPYGP----RDKEEVAKFTW-----------------EMTNFLVDRGIKMLVIACNTATA---AALYDIR 87 (269)
T ss_dssp CEEEEECGGGCCCTT----SCHHHHHHHHH-----------------HHHHHHHHTTCSEEEECCHHHHH---HHHHHHH
T ss_pred cEEEEeCCCCCCCCC----CCHHHHHHHHH-----------------HHHHHHHHCCCCEEEEeCCCccH---HHHHHHH
Confidence 477888776654443 22344433332 33456667789999999986442 2356666
Q ss_pred HhcCCCEEEe
Q psy1295 83 EDKNVPYVFV 92 (137)
Q Consensus 83 ~~~~IP~i~~ 92 (137)
+..+||++-+
T Consensus 88 ~~~~iPvigi 97 (269)
T 3ist_A 88 EKLDIPVIGV 97 (269)
T ss_dssp HHCSSCEEES
T ss_pred HhcCCCEEee
Confidence 7789999864
No 151
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=32.36 E-value=76 Score=24.86 Aligned_cols=42 Identities=12% Similarity=-0.049 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCcccEEEEecCCChhhHHHhHHH--HhHhcCCCEE
Q psy1295 48 ANEATKTLNRGLSEFIVLAADAEPLEIVLHLPL--LCEDKNVPYV 90 (137)
Q Consensus 48 ~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~--lc~~~~IP~i 90 (137)
..++.+.+++++++.||.-...+++ ..+.|.. .|++.|+|+.
T Consensus 235 l~~l~~~ik~~~v~~If~e~~~~~~-~~~~la~~~~A~e~gv~v~ 278 (313)
T 1toa_A 235 MQELAAFIAQRKLPAIFIESSIPHK-NVEALRDAVQARGHVVQIG 278 (313)
T ss_dssp HHHHHHHHHHTTCSEEEEETTSCTH-HHHHHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChH-HHHHHHccchhhhcCCcee
Confidence 3466777889999999999999997 7777763 3599999974
No 152
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=32.27 E-value=69 Score=23.85 Aligned_cols=47 Identities=4% Similarity=0.201 Sum_probs=31.3
Q ss_pred HHHHHHHHHcC------cccEEEEecC-----CChhhHHHhHHHHhHhcCCCEEEeCC
Q psy1295 48 ANEATKTLNRG------LSEFIVLAAD-----AEPLEIVLHLPLLCEDKNVPYVFVRS 94 (137)
Q Consensus 48 ~~~v~kaI~k~------kaklViiA~D-----~~~~~~~~~i~~lc~~~~IP~i~~~t 94 (137)
..++.++++++ +.++|++..- +-|.+..+.+.++|+++|+.++.-..
T Consensus 128 ~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~De~ 185 (359)
T 1svv_A 128 VADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGA 185 (359)
T ss_dssp HHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCCceecCHHHHHHHHHHHHHhCCEEEEEcc
Confidence 45556666655 4788888643 11223578899999999998875443
No 153
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=32.04 E-value=30 Score=24.83 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=17.6
Q ss_pred HHHhHHHHhHhcCCCEEEeC
Q psy1295 74 IVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 74 ~~~~i~~lc~~~~IP~i~~~ 93 (137)
+...|..+|+++|||++.-.
T Consensus 81 ~A~~I~e~A~e~gVPi~e~~ 100 (144)
T 2jlj_A 81 QVQTVRKIAEEEGVPILQRI 100 (144)
T ss_dssp HHHHHHHHHHHHTCCEEECH
T ss_pred HHHHHHHHHHHcCCCEEeCH
Confidence 78999999999999997653
No 154
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=32.04 E-value=19 Score=26.85 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=8.9
Q ss_pred ccccccCCCCCCCcccCCCCChHHHHHHHHHHH
Q psy1295 4 FLYFQTNEEPAVNPKAYPLADTALTTKILSLVQ 36 (137)
Q Consensus 4 ~~~~~~~~~~~~~~~~~p~a~~~~~~kl~~lL~ 36 (137)
-||||.|-|.+ ++-+++..++|.++|.
T Consensus 17 ~~~~~~~~~~~------~~k~~~r~~~I~eiI~ 43 (180)
T 3v4g_A 17 NLYFQSNAMRP------SEKQDNLVRAFKALLK 43 (180)
T ss_dssp -------------------CHHHHHHHHHHHHH
T ss_pred eeeehhhhccc------cccHHHHHHHHHHHHh
Confidence 48999999886 4556677777666554
No 155
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=31.95 E-value=1e+02 Score=23.88 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=30.9
Q ss_pred HHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCC--------------HHHHHHHhCCC
Q psy1295 52 TKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRS--------------KQALGRACGVS 105 (137)
Q Consensus 52 ~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~t--------------k~eLG~a~G~~ 105 (137)
.+.|.+=+-.+||.... ++. .+..+.+..|||++.+.. -..||+++|++
T Consensus 89 ~E~Ilal~PDLIi~~~~-~~~----~~~~~~~~~GiPvv~~~~~~~~~~~~~~~~~~i~~lG~~lG~e 151 (346)
T 2etv_A 89 LESLITLQPDVVFITYV-DRX----TAXDIQEXTGIPVVVLSYGNLGTFEDEDLFRSIELAGXILGRE 151 (346)
T ss_dssp HHHHHHHCCSEEEEESC-CHH----HHHHHHHHHTSCEEEECCCCTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCCCCEEEEeCC-ccc----hHHHHHHhcCCcEEEEecCccCcccHHHHHHHHHHHHHHcCCH
Confidence 44555556778887653 332 344555677999987742 13588888875
No 156
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=31.90 E-value=69 Score=20.97 Aligned_cols=75 Identities=9% Similarity=0.003 Sum_probs=39.2
Q ss_pred cccEEEEecCCChhhHHHhHHHH----h--HhcCCCEEEeCCHHHHHHHhC----------CCcceEEEEEEeCCCCChH
Q psy1295 59 LSEFIVLAADAEPLEIVLHLPLL----C--EDKNVPYVFVRSKQALGRACG----------VSRPIIACSVTVDEGSQLK 122 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~~l----c--~~~~IP~i~~~tk~eLG~a~G----------~~~~v~~~ai~~~~~s~~~ 122 (137)
.+..+++.-|++..+....+..+ . ...++|++.+.+|.+|-..-. ...++...-+-...+..+.
T Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 78 DSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 45566666666543222222221 1 125799999988877743111 0112222233334456788
Q ss_pred HHHHHHHHHHH
Q psy1295 123 PQIQAIQQQIE 133 (137)
Q Consensus 123 ~~i~e~~~~~~ 133 (137)
++++.+.+.+-
T Consensus 158 ~l~~~l~~~~~ 168 (170)
T 1z08_A 158 ELFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888776653
No 157
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=31.60 E-value=81 Score=24.65 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 48 ANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 48 ~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
.+.+.+.+..+++..+|.....+...+...+..+|..++||.+..
T Consensus 52 ~~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~ 96 (364)
T 3qel_B 52 ITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGI 96 (364)
T ss_dssp HHHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEe
Confidence 455666666677777776655544324556788999999999864
No 158
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=31.51 E-value=53 Score=22.41 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=40.5
Q ss_pred cccEEEEecCCChhh----HHHhHHHHhHh-----cCCCEEEeCCHHHHHH---------HhCC----CcceEEEEEEeC
Q psy1295 59 LSEFIVLAADAEPLE----IVLHLPLLCED-----KNVPYVFVRSKQALGR---------ACGV----SRPIIACSVTVD 116 (137)
Q Consensus 59 kaklViiA~D~~~~~----~~~~i~~lc~~-----~~IP~i~~~tk~eLG~---------a~G~----~~~v~~~ai~~~ 116 (137)
.+..+++.-|++..+ ....+..+.+. .++|++.+.+|.+|-. .++. ...+...-+-..
T Consensus 90 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 90 EGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAI 169 (190)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCC
Confidence 345666666654322 22333444443 6899999888776532 2321 122322333334
Q ss_pred CCCChHHHHHHHHHHHHHh
Q psy1295 117 EGSQLKPQIQAIQQQIERL 135 (137)
Q Consensus 117 ~~s~~~~~i~e~~~~~~~~ 135 (137)
.+..+.++++.+...+.++
T Consensus 170 ~~~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 170 KGEGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp TTBTHHHHHHHHHHHC---
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 4567888888887776554
No 159
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=31.17 E-value=97 Score=19.28 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=27.3
Q ss_pred HHHHHHHcCc--ccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 50 EATKTLNRGL--SEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 50 ~v~kaI~k~k--aklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
.+.+++++-+ -.+.|++.|-. ....++.+|+..|-.+...
T Consensus 26 ~~kkal~~l~~G~~l~V~~dd~~---a~~di~~~~~~~G~~~~~~ 67 (82)
T 3lvj_C 26 MVRKTVRNMQPGETLLIIADDPA---TTRDIPGFCTFMEHELVAK 67 (82)
T ss_dssp HHHHHHHTSCTTCEEEEEECCTT---HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhCCCCCEEEEEECCcc---HHHHHHHHHHHCCCEEEEE
Confidence 3455665422 24777777742 4689999999999887654
No 160
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=31.01 E-value=68 Score=24.54 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=32.5
Q ss_pred HHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 49 NEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
.++.+.+++++++.||.-...+++ +.+. ++++.|+++..+
T Consensus 213 ~~l~~~ik~~~v~~if~e~~~~~~-~~~~---ia~~~g~~v~~l 252 (284)
T 2prs_A 213 HEIRTQLVEQKATCVFAEPQFRPA-VVES---VARGTSVRMGTL 252 (284)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCSH-HHHH---HTTTSCCEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCChH-HHHH---HHHHcCCeEEEe
Confidence 566777889999999999999887 5554 488999998765
No 161
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=30.68 E-value=1.6e+02 Score=23.01 Aligned_cols=75 Identities=9% Similarity=0.097 Sum_probs=47.8
Q ss_pred CCCcccCCCCChHHHHHHHHHHHHHHHcCCccc----cHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCE
Q psy1295 14 AVNPKAYPLADTALTTKILSLVQQALNYKQLRK----GANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPY 89 (137)
Q Consensus 14 ~~~~~~~p~a~~~~~~kl~~lL~~A~~ag~lv~----G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~ 89 (137)
+-.|.+.|+..++=.+|+.-+++..++.+-.++ =..-...+++.| +.+ -.|++.-..-......+.++++||
T Consensus 53 STRPga~~vs~eeE~~Rv~pvi~~l~~~~v~iSIDT~~~~Va~~al~aG-a~i---INDVs~g~~d~~m~~~va~~~~~~ 128 (270)
T 4hb7_A 53 STRPGHEMVTLEEELNRVLPVVEAIVGFDVKISVDTFRSEVAEACLKLG-VDM---INDQWAGLYDHRMFQIVAKYDAEI 128 (270)
T ss_dssp CCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEECSCHHHHHHHHHHT-CCE---EEETTTTSSCTHHHHHHHHTTCEE
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHhc-cce---eccccccccchhHHHHHHHcCCCe
Confidence 346999999888888888888887765443222 233445567766 333 356543212234567788899999
Q ss_pred EEe
Q psy1295 90 VFV 92 (137)
Q Consensus 90 i~~ 92 (137)
|..
T Consensus 129 vlM 131 (270)
T 4hb7_A 129 ILM 131 (270)
T ss_dssp EEE
T ss_pred EEe
Confidence 865
No 162
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=30.54 E-value=90 Score=21.71 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=24.7
Q ss_pred HHHHHHcCcccEEEEecCCChhh----HHHhHHHHhHhcCCCEEEeC
Q psy1295 51 ATKTLNRGLSEFIVLAADAEPLE----IVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 51 v~kaI~k~kaklViiA~D~~~~~----~~~~i~~lc~~~~IP~i~~~ 93 (137)
+.+.+++.++.+||++.|..... ....+....++.++|++.+.
T Consensus 24 ~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~ 70 (228)
T 1uf3_A 24 FVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVP 70 (228)
T ss_dssp HHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEEC
T ss_pred HHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEC
Confidence 33444444788999999974321 11223333344578988774
No 163
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=30.52 E-value=81 Score=21.85 Aligned_cols=74 Identities=12% Similarity=0.097 Sum_probs=38.6
Q ss_pred ccEEEEecCCChhhHHHhHHHH----hH--hcCCCEEEeCCHHHHHHHhC----------CCcceEEEEEEeCCCCChHH
Q psy1295 60 SEFIVLAADAEPLEIVLHLPLL----CE--DKNVPYVFVRSKQALGRACG----------VSRPIIACSVTVDEGSQLKP 123 (137)
Q Consensus 60 aklViiA~D~~~~~~~~~i~~l----c~--~~~IP~i~~~tk~eLG~a~G----------~~~~v~~~ai~~~~~s~~~~ 123 (137)
+..+++.-|++..+....+..+ .. ..++|++.+.+|.+|-..-. ....+...-+-...+..+.+
T Consensus 98 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 98 AAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 177 (200)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 5555665565543333333322 11 24899999998887742111 11222222333344567777
Q ss_pred HHHHHHHHHH
Q psy1295 124 QIQAIQQQIE 133 (137)
Q Consensus 124 ~i~e~~~~~~ 133 (137)
+++.+...+.
T Consensus 178 l~~~l~~~i~ 187 (200)
T 2o52_A 178 AFLKCARTIL 187 (200)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777766653
No 164
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=30.38 E-value=25 Score=23.74 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=20.0
Q ss_pred ccEEEEecCCChhhHHH-------hHHHHhHhcCCCEEEeCCHHHH
Q psy1295 60 SEFIVLAADAEPLEIVL-------HLPLLCEDKNVPYVFVRSKQAL 98 (137)
Q Consensus 60 aklViiA~D~~~~~~~~-------~i~~lc~~~~IP~i~~~tk~eL 98 (137)
+..+++.-|++..+... .+...+...++|++.+.+|.+|
T Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 123 (181)
T 3t5g_A 78 INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 45555555554432222 2333444568999988877765
No 165
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=30.32 E-value=55 Score=27.00 Aligned_cols=72 Identities=7% Similarity=-0.031 Sum_probs=41.4
Q ss_pred HHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe-CCHHHHHHHhCCCcceEEEEEEeCCCCChHHHHHH
Q psy1295 50 EATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV-RSKQALGRACGVSRPIIACSVTVDEGSQLKPQIQA 127 (137)
Q Consensus 50 ~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~-~tk~eLG~a~G~~~~v~~~ai~~~~~s~~~~~i~e 127 (137)
++.+.+++-+++-|+||+|+++. ...|..+-...+|+++.. ++...+-.++....... | =+..|.+..-+.+
T Consensus 270 qIk~~vk~~~lksVFIATDa~~~--~~ELk~~L~~~~v~vv~~~pe~a~ID~~I~~~A~~F---I-GN~~SSFSa~I~r 342 (362)
T 3zy2_A 270 QIVEKVGSIGAKSVFVASDKDHM--IDEINEALKPYEIEAHRQEPDDMYTSLAIMGRADLF---V-GNCVSTFSHIVKR 342 (362)
T ss_dssp HHHHHHHHHTCSEEEEEESSCCC--HHHHHHHHGGGTCCEECCSSCCHHHHHHHHHHSSEE---E-ECTTCHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEecCCHHH--HHHHHHHhhccCceEEEeCCchhHHHHHHHHhCCEe---e-cCccccccHHHHH
Confidence 33334444479999999999873 567776666678888755 34444444433222221 2 1234666555544
No 166
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=30.18 E-value=87 Score=20.41 Aligned_cols=17 Identities=6% Similarity=0.163 Sum_probs=11.3
Q ss_pred HhHHHHhHhcCCCEEEe
Q psy1295 76 LHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 76 ~~i~~lc~~~~IP~i~~ 92 (137)
.....+-++++|||..+
T Consensus 35 ~~ak~~L~~~gi~y~~~ 51 (111)
T 3zyw_A 35 KQMVEILHKHNIQFSSF 51 (111)
T ss_dssp HHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHcCCCeEEE
Confidence 45556667778887755
No 167
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=30.16 E-value=88 Score=21.81 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=32.1
Q ss_pred cccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 45 RKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 45 v~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
..+..++++.+++. ...+++|+--+++ ....+..+++++++|+..+
T Consensus 26 ~~~~~~al~~l~~~-G~~iii~TgR~~~-~~~~~~~~l~~~gi~~~~I 71 (142)
T 2obb_A 26 IPFAVETLKLLQQE-KHRLILWSVREGE-LLDEAIEWCRARGLEFYAA 71 (142)
T ss_dssp CTTHHHHHHHHHHT-TCEEEECCSCCHH-HHHHHHHHHHTTTCCCSEE
T ss_pred CHHHHHHHHHHHHC-CCEEEEEeCCCcc-cHHHHHHHHHHcCCCeEEE
Confidence 34566777776543 3567777776665 6777888899999987544
No 168
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=29.98 E-value=2.1e+02 Score=24.23 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHcCCc---cccHHHHHHHH--------HcCcccEEEEecCCChhh-----------------------
Q psy1295 28 TTKILSLVQQALNYKQL---RKGANEATKTL--------NRGLSEFIVLAADAEPLE----------------------- 73 (137)
Q Consensus 28 ~~kl~~lL~~A~~ag~l---v~G~~~v~kaI--------~k~kaklViiA~D~~~~~----------------------- 73 (137)
..++.+.++..+-+|.+ =.|......++ +++.-+++|++.|++++.
T Consensus 200 ~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~~~ 279 (472)
T 3t3p_B 200 VTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDN 279 (472)
T ss_dssp HHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCBCTTC
T ss_pred HHHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCcCCCccccceecCCCCceEECCCC
Confidence 34455566655545542 12344444444 224579999999997641
Q ss_pred -----------HHHhHHHHhHhcCCCEEEeCCH------HHHHHHhCCCcceEEEEEEeCCCCChHHHHHHHHHHHH
Q psy1295 74 -----------IVLHLPLLCEDKNVPYVFVRSK------QALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIE 133 (137)
Q Consensus 74 -----------~~~~i~~lc~~~~IP~i~~~tk------~eLG~a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~ 133 (137)
....+.....+++|..|+.-++ ++|...+.. +.+...-.+.+.+.++|.+...+|.
T Consensus 280 ~Y~~s~~~DYPSv~ql~~~l~e~nI~~IFAVt~~~~~~Y~~L~~~ip~----s~vg~L~~dSsNiv~LI~~aY~~i~ 352 (472)
T 3t3p_B 280 HYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIPG----TTVGVLSMDSSNVLQLIVDAYGKIR 352 (472)
T ss_dssp BBTTTTTSCCCCHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTSTT----CEEEECCTTSTTHHHHHHHHHHHHT
T ss_pred cccccccCCCCCHHHHHHHHHhcCccEEEEEeccchhHHHHHHHhCCC----ceeeeccccchhHHHHHHHHHHHhh
Confidence 1445566667778887776554 356666653 2456777878899999999887763
No 169
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=29.91 E-value=2e+02 Score=22.56 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=45.5
Q ss_pred CCcccCCCCChHHHHHHHHHHHHHHHc-CCcc----ccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCE
Q psy1295 15 VNPKAYPLADTALTTKILSLVQQALNY-KQLR----KGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPY 89 (137)
Q Consensus 15 ~~~~~~p~a~~~~~~kl~~lL~~A~~a-g~lv----~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~ 89 (137)
-.|.+.|+..++=.+++..+++..++. +..+ .-......+++.| +.++ .|++....-..+..+++++++|+
T Consensus 87 trPga~~v~~~eE~~RvvpvI~~l~~~~~vpiSIDT~~~~V~~aAl~aG-a~iI---Ndvsg~~~d~~m~~~aa~~g~~v 162 (297)
T 1tx2_A 87 TRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEAG-AHII---NDIWGAKAEPKIAEVAAHYDVPI 162 (297)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEECSCHHHHHHHHHHT-CCEE---EETTTTSSCTHHHHHHHHHTCCE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHcC-CCEE---EECCCCCCCHHHHHHHHHhCCcE
Confidence 347888888777788888777766653 4322 2344455556665 3333 66655311345667889999999
Q ss_pred EEeCC
Q psy1295 90 VFVRS 94 (137)
Q Consensus 90 i~~~t 94 (137)
|-...
T Consensus 163 Vlmh~ 167 (297)
T 1tx2_A 163 ILMHN 167 (297)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 87653
No 170
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=29.83 E-value=73 Score=21.89 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=28.0
Q ss_pred cCCCEEEeCCHHHHH------------HHhCCCcc-eEEEEEEeCCCCChHHHHHHHHHHHHH
Q psy1295 85 KNVPYVFVRSKQALG------------RACGVSRP-IIACSVTVDEGSQLKPQIQAIQQQIER 134 (137)
Q Consensus 85 ~~IP~i~~~tk~eLG------------~a~G~~~~-v~~~ai~~~~~s~~~~~i~e~~~~~~~ 134 (137)
.++|++.+++|.+|- ..+-...+ +...-+-...+..+.++++.+...+.+
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 118 SEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 579999888876651 11111111 222223334456788888887776643
No 171
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=29.82 E-value=1.7e+02 Score=21.67 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=32.3
Q ss_pred HHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC---C-------HHHHHHHhCCC
Q psy1295 51 ATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR---S-------KQALGRACGVS 105 (137)
Q Consensus 51 v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~---t-------k~eLG~a~G~~ 105 (137)
-.+.|..=+-.|||......+.+..+.+ ++.+||++.+. + -..||+++|++
T Consensus 51 n~E~i~~l~PDLIi~~~~~~~~~~~~~L----~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 111 (283)
T 2r79_A 51 AAEGVLALRPDILIGTEEMGPPPVLKQL----EGAGVRVETLSAKPDLEALESNLKKLGDWLGVP 111 (283)
T ss_dssp CHHHHHTTCCSEEEECTTCCCHHHHHHH----HHTTCCEEECCCCSSHHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHhcCCCEEEEeCccCcHHHHHHH----HHcCCcEEEecCCCCHHHHHHHHHHHHHHhCCH
Confidence 4566777788888876544332244443 55789988763 2 12578888875
No 172
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=29.63 E-value=1.2e+02 Score=19.98 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=31.7
Q ss_pred CcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe-CCHH---HHHHHhCCC
Q psy1295 58 GLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV-RSKQ---ALGRACGVS 105 (137)
Q Consensus 58 ~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~-~tk~---eLG~a~G~~ 105 (137)
.++.+|.|.-|-.. +....+..++++++.++..+ ++.. ++.+..|..
T Consensus 63 ~~v~vv~is~d~~~-d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 113 (171)
T 2rli_A 63 PPVQPVFITVDPER-DDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVY 113 (171)
T ss_dssp CCEEEEEEESCSTT-CCHHHHHHHHHTTCTTCCEEECCHHHHHHHHHHSCCC
T ss_pred CceEEEEEEECCCC-CCHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHhCeE
Confidence 46888888877533 24566778888998887655 3333 577777764
No 173
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=29.62 E-value=89 Score=21.21 Aligned_cols=74 Identities=11% Similarity=0.134 Sum_probs=38.3
Q ss_pred ccEEEEecCCChhhHHHhHHH----HhH--hcCCCEEEeCCHHHHHHHhC----------CCcceEEEEEEeCCCCChHH
Q psy1295 60 SEFIVLAADAEPLEIVLHLPL----LCE--DKNVPYVFVRSKQALGRACG----------VSRPIIACSVTVDEGSQLKP 123 (137)
Q Consensus 60 aklViiA~D~~~~~~~~~i~~----lc~--~~~IP~i~~~tk~eLG~a~G----------~~~~v~~~ai~~~~~s~~~~ 123 (137)
+..+++.-|++.......+.. +.. ..++|++.+.+|.+|-..-. ....+...-+-...+..+.+
T Consensus 98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL 177 (193)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 455555556544323222222 222 24799999988887743211 11222222333344567777
Q ss_pred HHHHHHHHHH
Q psy1295 124 QIQAIQQQIE 133 (137)
Q Consensus 124 ~i~e~~~~~~ 133 (137)
+++.+...+.
T Consensus 178 l~~~l~~~i~ 187 (193)
T 2oil_A 178 AFETVLKEIF 187 (193)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777776654
No 174
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=29.60 E-value=72 Score=20.86 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=33.1
Q ss_pred cHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCC
Q psy1295 47 GANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRS 94 (137)
Q Consensus 47 G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~t 94 (137)
+..+.... -..+.+|+.+.+.... .+.+...|..+++|++.+..
T Consensus 41 ~~~~~~~~--~~~~D~Ii~t~~l~~~--~~~~~~~~~~~~~pv~~I~~ 84 (109)
T 2l2q_A 41 AETRLSEV--VDRFDVVLLAPQSRFN--KKRLEEITKPKGIPIEIINT 84 (109)
T ss_dssp CSTTHHHH--TTTCSEEEECSCCSSH--HHHHHHHHHHHTCCEEECCH
T ss_pred cHHHHHhh--cCCCCEEEECCccHHH--HHHHHHHhcccCCCEEEECh
Confidence 44444443 2568999999999774 78888899889999977654
No 175
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=29.59 E-value=92 Score=20.04 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=24.9
Q ss_pred cEEEEec------CCChhhHHHhHHHHhHhcCCCEEEeC---C---HHHHHHHhCCC
Q psy1295 61 EFIVLAA------DAEPLEIVLHLPLLCEDKNVPYVFVR---S---KQALGRACGVS 105 (137)
Q Consensus 61 klViiA~------D~~~~~~~~~i~~lc~~~~IP~i~~~---t---k~eLG~a~G~~ 105 (137)
+++|... .| | .=.....+-++++|||..+. + +++|.+..|..
T Consensus 19 ~Vvvy~k~t~~~p~C-p--~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~ 72 (109)
T 3ipz_A 19 KVVLFMKGTRDFPMC-G--FSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWP 72 (109)
T ss_dssp SEEEEESBCSSSBSS-H--HHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCS
T ss_pred CEEEEEecCCCCCCC-h--hHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCC
Confidence 4556655 46 3 24556667778889887542 2 24566666654
No 176
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=29.54 E-value=36 Score=22.18 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=15.9
Q ss_pred hHHHHhHhcCCCEEEeCCHHHHH
Q psy1295 77 HLPLLCEDKNVPYVFVRSKQALG 99 (137)
Q Consensus 77 ~i~~lc~~~~IP~i~~~tk~eLG 99 (137)
.+...+...++|++.+.+|.+|-
T Consensus 99 ~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 99 QIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp HHHHHTTTSCCCEEEEEECGGGG
T ss_pred HHHHhcCCCCCCEEEEEECCccc
Confidence 34444555689999998887763
No 177
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=29.38 E-value=59 Score=21.54 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=28.5
Q ss_pred cccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCC---HHHHHHHhCCC
Q psy1295 59 LSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRS---KQALGRACGVS 105 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~t---k~eLG~a~G~~ 105 (137)
.+.++.|..|. + ..+..+++++++++....+ ..++.+..|..
T Consensus 70 ~~~vv~is~d~-~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~ 114 (160)
T 1xvw_A 70 DSAALAISVGP-P----PTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVF 114 (160)
T ss_dssp SEEEEEEESCC-H----HHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCE
T ss_pred CcEEEEEeCCC-H----HHHHHHHHhcCCCceEEecCCcChHHHHHcCCc
Confidence 47778887773 2 2455667778887665544 67888888865
No 178
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=29.35 E-value=1.6e+02 Score=21.28 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=32.4
Q ss_pred HHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC----CH-------HHHHHHhCCC
Q psy1295 51 ATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR----SK-------QALGRACGVS 105 (137)
Q Consensus 51 v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~----tk-------~eLG~a~G~~ 105 (137)
-.+.|..=+-.|||......+.+..+.+ ++.+||++.+. +- ..||+++|++
T Consensus 51 n~E~i~~l~PDLIi~~~~~~~~~~~~~L----~~~gipvv~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (256)
T 2r7a_A 51 SSEGILSLRPDSVITWQDAGPQIVLDQL----RAQKVNVVTLPRVPATLEQMYANIRQLAKTLQVP 112 (256)
T ss_dssp CHHHHHTTCCSEEEEETTCSCHHHHHHH----HHTTCEEEEECCCSCCHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHccCCCEEEEcCCCCCHHHHHHH----HHcCCcEEEecCCCCCHHHHHHHHHHHHHHhCCH
Confidence 4567777788898876653332244444 56789988764 21 2578888865
No 179
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=29.32 E-value=55 Score=21.93 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=37.8
Q ss_pred cccEEEEecCCChhhHHHhHH-------HHhHhcCCCEEEeCCHHHHHH--------------HhCCCcceEEEEEEeCC
Q psy1295 59 LSEFIVLAADAEPLEIVLHLP-------LLCEDKNVPYVFVRSKQALGR--------------ACGVSRPIIACSVTVDE 117 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~-------~lc~~~~IP~i~~~tk~eLG~--------------a~G~~~~v~~~ai~~~~ 117 (137)
.+..+++.-|++..+....+. ..+...++|++.+.+|.+|-. ..|.+ ..-+-...
T Consensus 93 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~Sa~~ 168 (195)
T 3bc1_A 93 DAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP----YFETSAAN 168 (195)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC----EEECCTTT
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCC----EEEEECCC
Confidence 455666666664432333322 222226899999888776532 12321 22222334
Q ss_pred CCChHHHHHHHHHHHH
Q psy1295 118 GSQLKPQIQAIQQQIE 133 (137)
Q Consensus 118 ~s~~~~~i~e~~~~~~ 133 (137)
+..+.++++.+...+.
T Consensus 169 ~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 169 GTNISHAIEMLLDLIM 184 (195)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5677777777766554
No 180
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=29.25 E-value=90 Score=23.26 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=30.5
Q ss_pred HHHHHHHHHc--CcccEEEEecCCCh----h---hHHHhHHHHhHhcCCCEEEeCCH
Q psy1295 48 ANEATKTLNR--GLSEFIVLAADAEP----L---EIVLHLPLLCEDKNVPYVFVRSK 95 (137)
Q Consensus 48 ~~~v~kaI~k--~kaklViiA~D~~~----~---~~~~~i~~lc~~~~IP~i~~~tk 95 (137)
.+.+.+.+.+ .++.+||++.|.-. . .+...+..+.+..++|++.+...
T Consensus 53 l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~~v~GN 109 (330)
T 3ib7_A 53 LGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGN 109 (330)
T ss_dssp HHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEEECCCT
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEEEeCCC
Confidence 4455556655 78999999999743 1 13334444445568998877543
No 181
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=29.03 E-value=40 Score=23.17 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCcccEEEEecC-CCh----------hhHHHhHHHHhHhcCCCEEEe
Q psy1295 48 ANEATKTLNRGLSEFIVLAAD-AEP----------LEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 48 ~~~v~kaI~k~kaklViiA~D-~~~----------~~~~~~i~~lc~~~~IP~i~~ 92 (137)
..+.++.+++..++++++..- ..+ ..+-..+..+|++++++++-.
T Consensus 119 l~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~vD~ 174 (216)
T 3rjt_A 119 LRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFVDV 174 (216)
T ss_dssp HHHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCCEECH
T ss_pred HHHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCeEEEc
Confidence 445556666667788887421 111 125667788899999998765
No 182
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=28.84 E-value=31 Score=27.11 Aligned_cols=41 Identities=7% Similarity=-0.010 Sum_probs=32.4
Q ss_pred HHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 49 NEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
.++.+.+++++++.||.-...+++ +.+. ++++.|+++..+.
T Consensus 229 ~~l~~~ik~~~v~~If~e~~~~~~-~~~~---ia~e~g~~v~~l~ 269 (312)
T 2o1e_A 229 AKLKTYAKEHNVKVIYFEEIASSK-VADT---LASEIGAKTEVLN 269 (312)
T ss_dssp HHHHHHTTSSCCCEEECSSCCCHH-HHHH---HHHHTCCEEECCC
T ss_pred HHHHHHHHHcCCCEEEEeCCCChH-HHHH---HHHHhCCcEEEec
Confidence 456677788999999999998886 5554 4789999988764
No 183
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=28.77 E-value=1.7e+02 Score=22.41 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=30.0
Q ss_pred HHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCC--H-------HHHHHHhCCC
Q psy1295 52 TKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRS--K-------QALGRACGVS 105 (137)
Q Consensus 52 ~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~t--k-------~eLG~a~G~~ 105 (137)
.+.|..-+-.|||.... .+. ..+.+ ++.|||++.+.. - ..||+++|++
T Consensus 109 ~E~i~al~PDLIi~~~~-~~~-~~~~L----~~~gipvv~~~~~~~~~~~~~i~~lg~~lg~e 165 (335)
T 4hn9_A 109 TEACVAATPDVVFLPMK-LKK-TADTL----ESLGIKAVVVNPEDQSLLEECITLVGKITNNA 165 (335)
T ss_dssp HHHHHHTCCSEEEEEGG-GHH-HHHHH----HHTTCCEEEECCCSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCCEEEEeCc-chh-HHHHH----HHcCCCEEEEcCCCHHHHHHHHHHHHHHcCCH
Confidence 45566667788877653 222 33333 567899987742 1 3588888875
No 184
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=28.73 E-value=69 Score=22.34 Aligned_cols=75 Identities=13% Similarity=0.107 Sum_probs=38.2
Q ss_pred cccEEEEecCCChhhHHHhHHHHhHh-------cCCCEEEeCCHHHHHHH----------hCCCcceEEEEEEeCCCCCh
Q psy1295 59 LSEFIVLAADAEPLEIVLHLPLLCED-------KNVPYVFVRSKQALGRA----------CGVSRPIIACSVTVDEGSQL 121 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~~lc~~-------~~IP~i~~~tk~eLG~a----------~G~~~~v~~~ai~~~~~s~~ 121 (137)
.+..+++.-|++..+....+..+-.. .++|++.+.+|.+|-.. +-....+...-+-...+..+
T Consensus 107 ~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi 186 (217)
T 2f7s_A 107 DAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNV 186 (217)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCH
Confidence 45566666666543344444433322 57898888877665321 00011121222333345567
Q ss_pred HHHHHHHHHHHH
Q psy1295 122 KPQIQAIQQQIE 133 (137)
Q Consensus 122 ~~~i~e~~~~~~ 133 (137)
.++++.+.+.+.
T Consensus 187 ~~l~~~l~~~i~ 198 (217)
T 2f7s_A 187 EKAVETLLDLIM 198 (217)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666554
No 185
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=28.63 E-value=16 Score=22.76 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=21.7
Q ss_pred CChhhHHHhHHHHhHhcCCCEEEeCCHHHHHH
Q psy1295 69 AEPLEIVLHLPLLCEDKNVPYVFVRSKQALGR 100 (137)
Q Consensus 69 ~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~ 100 (137)
.+|+ +. .++|+.++||+-.++++....+
T Consensus 23 lDPR-It---vaWcKr~~VPieKif~ktlr~K 50 (62)
T 2b9s_B 23 IDPR-II---CSWAKAQDVPINKIFSATIQKK 50 (62)
T ss_dssp SCHH-HH---HHHHHHTTCCGGGTSCHHHHHH
T ss_pred cCch-hh---hhhhhhcCCCHHHHhhHHHHHh
Confidence 4576 33 5899999999998888876654
No 186
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=28.54 E-value=1.2e+02 Score=19.59 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=30.1
Q ss_pred HHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe-CCHHHHHHHhCCC
Q psy1295 55 LNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV-RSKQALGRACGVS 105 (137)
Q Consensus 55 I~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~-~tk~eLG~a~G~~ 105 (137)
.....+.++.+..|.++. .+..+.+++++++-.. ....++.+..|..
T Consensus 55 ~~~~~v~vv~v~~d~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 102 (151)
T 2f9s_A 55 FKSQGVEIVAVNVGESKI----AVHNFMKSYGVNFPVVLDTDRQVLDAYDVS 102 (151)
T ss_dssp HGGGTEEEEEEEESCCHH----HHHHHHHHHTCCSCEEEETTSHHHHHTTCC
T ss_pred hccCCeEEEEEECCCCHH----HHHHHHHHcCCCceEEECCchHHHHhcCCC
Confidence 333357777777776553 3455667777775544 3456788888875
No 187
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=28.48 E-value=64 Score=24.18 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=27.8
Q ss_pred cccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 59 LSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
+..+||.|.|. +. ....+...|.++++|++...
T Consensus 121 ~~DvVi~~~d~-~~-~~~~l~~~~~~~~~p~i~~~ 153 (249)
T 1jw9_B 121 EHDLVLDCTDN-VA-VRNQLNAGCFAAKVPLVSGA 153 (249)
T ss_dssp TSSEEEECCSS-HH-HHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEeCCC-HH-HHHHHHHHHHHcCCCEEEee
Confidence 57899999985 53 78899999999999998854
No 188
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=28.45 E-value=91 Score=19.79 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=16.8
Q ss_pred cEEEE-ecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 61 EFIVL-AADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 61 klVii-A~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
+++|. +..| |. =.....+.++++|||..+
T Consensus 17 ~v~vy~~~~C-p~--C~~ak~~L~~~~i~y~~i 46 (99)
T 3qmx_A 17 KIEIYTWSTC-PF--CMRALALLKRKGVEFQEY 46 (99)
T ss_dssp CEEEEECTTC-HH--HHHHHHHHHHHTCCCEEE
T ss_pred CEEEEEcCCC-hh--HHHHHHHHHHCCCCCEEE
Confidence 34444 4455 43 345556667778888755
No 189
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=28.41 E-value=60 Score=22.20 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=39.0
Q ss_pred cccEEEEecCCChhhHHHhHH----HHhH--hcCCCEEEeCCHHHHHHH----------hCCCcceEEEEEEeCCCCChH
Q psy1295 59 LSEFIVLAADAEPLEIVLHLP----LLCE--DKNVPYVFVRSKQALGRA----------CGVSRPIIACSVTVDEGSQLK 122 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~----~lc~--~~~IP~i~~~tk~eLG~a----------~G~~~~v~~~ai~~~~~s~~~ 122 (137)
.+..+++.-|++..+....+. .+.+ ..++|++.+.+|.+|-.. +-....+...-+-...+..+.
T Consensus 93 ~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 93 GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVE 172 (191)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 355666666665433333332 2222 247999988877765321 101112222233334456777
Q ss_pred HHHHHHHHHHHH
Q psy1295 123 PQIQAIQQQIER 134 (137)
Q Consensus 123 ~~i~e~~~~~~~ 134 (137)
++++.+...+.+
T Consensus 173 ~l~~~l~~~i~~ 184 (191)
T 2a5j_A 173 EAFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777766543
No 190
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=28.23 E-value=85 Score=24.73 Aligned_cols=45 Identities=7% Similarity=0.063 Sum_probs=30.4
Q ss_pred HHHHHHHHc---CcccEEEEecCCC-------hhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 49 NEATKTLNR---GLSEFIVLAADAE-------PLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 49 ~~v~kaI~k---~kaklViiA~D~~-------~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
.++.+++.+ ++.++|++..=.+ +.+..+.+..+|++||++++.-.
T Consensus 170 ~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De 224 (467)
T 1ax4_A 170 KKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDS 224 (467)
T ss_dssp HHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEc
Confidence 455556654 3678888853211 22467889999999999998653
No 191
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=28.21 E-value=71 Score=23.04 Aligned_cols=82 Identities=16% Similarity=0.068 Sum_probs=54.6
Q ss_pred HHcCCccccHHHHHHHHHcCcccEEEEecCCChh-hHHHhHHHHhHhcCCCEEEeCCHHHHHHHhCCC---cceEEEEEE
Q psy1295 39 LNYKQLRKGANEATKTLNRGLSEFIVLAADAEPL-EIVLHLPLLCEDKNVPYVFVRSKQALGRACGVS---RPIIACSVT 114 (137)
Q Consensus 39 ~~ag~lv~G~~~v~kaI~k~kaklViiA~D~~~~-~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G~~---~~v~~~ai~ 114 (137)
|--.+|+-|. ++.+.+.-++..++++.|.-.. ++.+.+..+|.-.||.+.++ |-++.-+.+... .++ .+.
T Consensus 11 RIDdRLIHGQ--~~~W~k~~~~~~IiVvnD~vA~D~~~k~~lk~A~P~gvk~~i~-sve~ai~~~~~~~~~~~v---~il 84 (163)
T 3p3v_A 11 RVDERLIHGQ--GQLWVKFLNCNTVIVANDAVSEDKIQQSLMKTVIPSSIAIRFF-SIQKVIDIIHKASPAQSI---FIV 84 (163)
T ss_dssp EEETTGGGST--HHHHHHHTTCSEEEEECHHHHHCHHHHHHHGGGSCTTSEEEEE-CHHHHHHHGGGCCTTCEE---EEE
T ss_pred EEcccchhhh--hhhhhhhcCCCEEEEEcccccCCHHHHHHHHhhCCCCceEEEE-EHHHHHHHHhccCCCceE---EEE
Confidence 3456889998 8899999999999999996322 37788888888888887544 444444444321 233 355
Q ss_pred eCCCCChHHHHH
Q psy1295 115 VDEGSQLKPQIQ 126 (137)
Q Consensus 115 ~~~~s~~~~~i~ 126 (137)
+....++..+++
T Consensus 85 ~k~p~d~~~lv~ 96 (163)
T 3p3v_A 85 VKDLQDAKLLVE 96 (163)
T ss_dssp ESSHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 555555555544
No 192
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=28.19 E-value=40 Score=25.86 Aligned_cols=46 Identities=9% Similarity=0.028 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCcccEEEEe-cCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 48 ANEATKTLNRGLSEFIVLA-ADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 48 ~~~v~kaI~k~kaklViiA-~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
..++.+++...+.++|++. .+.+...-.+.+..+|+++|++++.-.
T Consensus 152 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De 198 (405)
T 2vi8_A 152 YDDVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDM 198 (405)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEEEc
Confidence 3455566654356777774 332222126789999999999887544
No 193
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=34.16 E-value=12 Score=24.55 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=21.9
Q ss_pred EEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 62 FIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 62 lViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
-+++|+=.+. +..+|...++++|||++.-
T Consensus 18 P~VvAKG~~~--~A~~I~e~A~e~~VPi~e~ 46 (87)
T 3b1s_B 18 PVVVAKGKGT--IAQKIVEIAENYSIPVVRK 46 (87)
Confidence 3555555544 6889999999999998754
No 194
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=28.02 E-value=94 Score=23.02 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCcc--cEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 48 ANEATKTLNRGLS--EFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 48 ~~~v~kaI~k~ka--klViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
...+++++.++.. .++.+-+|-+.. ....+|+++|||+..+.
T Consensus 15 ~~~~l~~l~~~~~~~~i~~Vvs~~~~~----~~~~~A~~~gIp~~~~~ 58 (216)
T 2ywr_A 15 LQAIIDAIESGKVNASIELVISDNPKA----YAIERCKKHNVECKVIQ 58 (216)
T ss_dssp HHHHHHHHHTTSSCEEEEEEEESCTTC----HHHHHHHHHTCCEEECC
T ss_pred HHHHHHHHHhCCCCCeEEEEEeCCCCh----HHHHHHHHcCCCEEEeC
Confidence 3456777777653 666665553322 35688999999998643
No 195
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=27.98 E-value=95 Score=24.45 Aligned_cols=44 Identities=11% Similarity=0.217 Sum_probs=30.1
Q ss_pred HHHHHHHHc---CcccEEEEecCCC-------hhhHHHhHHHHhHhcCCCEEEe
Q psy1295 49 NEATKTLNR---GLSEFIVLAADAE-------PLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 49 ~~v~kaI~k---~kaklViiA~D~~-------~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
.++.+++.+ .+.++|++..=.+ +.+..+.+..+|++||++++.-
T Consensus 170 ~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D 223 (467)
T 2oqx_A 170 EGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMD 223 (467)
T ss_dssp HHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 455555653 3678888853111 2346789999999999999865
No 196
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=27.94 E-value=1.3e+02 Score=21.01 Aligned_cols=87 Identities=8% Similarity=0.092 Sum_probs=42.1
Q ss_pred ccccHHHHHHHHHc----------CcccEEEEecCCCh------hhHHHhHHHHh---------HhcCCCEEEe--C---
Q psy1295 44 LRKGANEATKTLNR----------GLSEFIVLAADAEP------LEIVLHLPLLC---------EDKNVPYVFV--R--- 93 (137)
Q Consensus 44 lv~G~~~v~kaI~k----------~kaklViiA~D~~~------~~~~~~i~~lc---------~~~~IP~i~~--~--- 93 (137)
+-.|.....+.+.. +..+.||+-.|..+ ......+..+| +..+|++..+ +
T Consensus 102 ~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~~~ 181 (223)
T 1q0p_A 102 TKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLV 181 (223)
T ss_dssp HHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCC
T ss_pred HHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEecCcC
Confidence 55677777776652 34578888888743 33445555443 4567877654 3
Q ss_pred CHHHHHHHhCCCcceEEEEEEeCCCCChHHHHHHHHHH
Q psy1295 94 SKQALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQ 131 (137)
Q Consensus 94 tk~eLG~a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~ 131 (137)
+..+|-...+...+-. -.....+.+++.+.++++.++
T Consensus 182 ~~~~L~~iA~~~~G~~-~~~~~~~~~~L~~~~~~i~~~ 218 (223)
T 1q0p_A 182 NQVNINALASKKDNEQ-HVFKVKDMENLEDVFYQMIDE 218 (223)
T ss_dssp CHHHHHHHSCCCTTCC-CEEETTC--------------
T ss_pred CHHHHHHHhcCCCCCc-eEEEcCCHHHHHHHHHHHhcc
Confidence 3567877776653200 023445556777777766654
No 197
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=27.93 E-value=1e+02 Score=21.09 Aligned_cols=30 Identities=7% Similarity=0.065 Sum_probs=17.4
Q ss_pred HhHHHHhHhcCCCEEEeC---C---HHHHHHHhCCC
Q psy1295 76 LHLPLLCEDKNVPYVFVR---S---KQALGRACGVS 105 (137)
Q Consensus 76 ~~i~~lc~~~~IP~i~~~---t---k~eLG~a~G~~ 105 (137)
.....+.++++|||..+. + +.+|.+..|..
T Consensus 54 ~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~ 89 (135)
T 2wci_A 54 AQAVQALAACGERFAYVDILQNPDIRAELPKYANWP 89 (135)
T ss_dssp HHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCC
Confidence 345566677788876553 1 23566666654
No 198
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=27.91 E-value=2.1e+02 Score=22.00 Aligned_cols=117 Identities=14% Similarity=0.122 Sum_probs=67.0
Q ss_pred CcccCCCCChH-HH-------------HHHHHHHHHHHHcCC-c---------cccHHHHHHHHHcCcccEEEEecCCCh
Q psy1295 16 NPKAYPLADTA-LT-------------TKILSLVQQALNYKQ-L---------RKGANEATKTLNRGLSEFIVLAADAEP 71 (137)
Q Consensus 16 ~~~~~p~a~~~-~~-------------~kl~~lL~~A~~ag~-l---------v~G~~~v~kaI~k~kaklViiA~D~~~ 71 (137)
.|++-|+|+=. ++ ++++++++..|..-- + ..|...-.+..++--+.=+|+ .|..+
T Consensus 49 iPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~Ii-pDLP~ 127 (252)
T 3tha_A 49 VAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIV-PELSF 127 (252)
T ss_dssp CCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCSSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEEC-TTCCG
T ss_pred CCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcCCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEe-CCCCH
Confidence 58999999753 33 344555554432211 2 236666666665555665555 46766
Q ss_pred hhHHHhHHHHhHhcCCCEEEe--CC--HHHHHHHhCCCcceEEEEE--EeCC-CCChHHHHHHHHHHHHH
Q psy1295 72 LEIVLHLPLLCEDKNVPYVFV--RS--KQALGRACGVSRPIIACSV--TVDE-GSQLKPQIQAIQQQIER 134 (137)
Q Consensus 72 ~~~~~~i~~lc~~~~IP~i~~--~t--k~eLG~a~G~~~~v~~~ai--~~~~-~s~~~~~i~e~~~~~~~ 134 (137)
. -...+...|+++|+..++. ++ .+++-+.........-+.. .+-+ ...+.+.+.+..+++.+
T Consensus 128 e-E~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~ 196 (252)
T 3tha_A 128 E-ESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRS 196 (252)
T ss_dssp G-GCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHH
Confidence 5 4788999999999976652 33 5778877776655432211 1111 12344445556665544
No 199
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=27.82 E-value=1.9e+02 Score=21.50 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=40.8
Q ss_pred ccccHHHHHHHHHcC-----cccEEEEecCCChhh--HHHhHHHHhHhcCCCEEEe--C---CHHHHHHHhCCC
Q psy1295 44 LRKGANEATKTLNRG-----LSEFIVLAADAEPLE--IVLHLPLLCEDKNVPYVFV--R---SKQALGRACGVS 105 (137)
Q Consensus 44 lv~G~~~v~kaI~k~-----kaklViiA~D~~~~~--~~~~i~~lc~~~~IP~i~~--~---tk~eLG~a~G~~ 105 (137)
+-.|...+...+... ..+.||+-.|..+.+ -........+..||.++.+ + +.+.|-...+.+
T Consensus 108 ~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d~~~~~~~~~~l~~~gv~i~~igiG~~~~~~~L~~iA~~~ 181 (281)
T 4hqf_A 108 LTDALLQVRKHLNDRINRENANQLVVILTDGIPDSIQDSLKESRKLSDRGVKIAVFGIGQGINVAFNRFLVGCH 181 (281)
T ss_dssp HHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSCHHHHHHHHHHHHHTTCEEEEEEESSSCCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCCcHHHHHHHHHHHHCCCEEEEEeCCCccCHHHHHhhhCCC
Confidence 566677776666543 467888888887652 2333445556889998765 2 456788887764
No 200
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=27.76 E-value=1.4e+02 Score=20.06 Aligned_cols=50 Identities=10% Similarity=0.176 Sum_probs=34.0
Q ss_pred HHHHHHcCccc-EEEEecCCChhhHHHhHHHHhHhcCC--CEEEeC-CHHHHHHHhCCC
Q psy1295 51 ATKTLNRGLSE-FIVLAADAEPLEIVLHLPLLCEDKNV--PYVFVR-SKQALGRACGVS 105 (137)
Q Consensus 51 v~kaI~k~kak-lViiA~D~~~~~~~~~i~~lc~~~~I--P~i~~~-tk~eLG~a~G~~ 105 (137)
..+..++..+. ++.|+.|- + ....++++++++ ++-... ...+++++.|..
T Consensus 62 ~~~~~~~~~v~~vv~Is~d~-~----~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
T 1tp9_A 62 KAGELKSKGVTEILCISVND-P----FVMKAWAKSYPENKHVKFLADGSATYTHALGLE 115 (162)
T ss_dssp HHHHHHHTTCCCEEEEESSC-H----HHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCE
T ss_pred HHHHHHHCCCCEEEEEECCC-H----HHHHHHHHhcCCCCCeEEEECCCchHHHHcCcc
Confidence 33344445688 99998883 3 235677888888 776553 457889988875
No 201
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A*
Probab=27.67 E-value=79 Score=24.02 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 29 TKILSLVQQALNYKQLR------KGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 29 ~kl~~lL~~A~~ag~lv------~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
....+.+...++.|++. .+..++.++++......++.--..++......+..+|+++||.++-.
T Consensus 120 ~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 189 (276)
T 3f7j_A 120 KDTWRALEKLYKDGKIRAIGVSNFQVHHLEELLKDAEIKPMVNQVEFHPRLTQKELRDYCKGQGIQLEAW 189 (276)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHcCCccEEEeccCCHHHHHHHHHhcCCCceeeeeeeccccCCHHHHHHHHHCCCEEEEe
Confidence 44567777778888764 25677777777776665555444444333457889999999998743
No 202
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=27.53 E-value=62 Score=21.20 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=27.9
Q ss_pred hcCCCEEEeCCHHHHHH----------HhCCCcceEEEEEEeCCCCChHHHHHHHHHHHHH
Q psy1295 84 DKNVPYVFVRSKQALGR----------ACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIER 134 (137)
Q Consensus 84 ~~~IP~i~~~tk~eLG~----------a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~~ 134 (137)
..++|++.+++|.+|-. .......+...-+-...+..+.++++.+...+.+
T Consensus 104 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 104 TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp --CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 35899999888776531 1111112222223234456788888887777653
No 203
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=27.53 E-value=85 Score=24.50 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCcccEEEEecCCCh------hhHHHhHHHHhHhcCCCEEEe
Q psy1295 48 ANEATKTLNRGLSEFIVLAADAEP------LEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 48 ~~~v~kaI~k~kaklViiA~D~~~------~~~~~~i~~lc~~~~IP~i~~ 92 (137)
..++.+++.+.+.++|++..=-+| .+-.+.+.++|+++++.++.-
T Consensus 183 ~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~D 233 (421)
T 3l8a_A 183 FEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSD 233 (421)
T ss_dssp HHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 456666676567888887543222 125788999999999998753
No 204
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=27.46 E-value=1.4e+02 Score=19.93 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=38.7
Q ss_pred cccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhCCC---------cceEEEEEEeCCCCChHHHHHHHH
Q psy1295 59 LSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACGVS---------RPIIACSVTVDEGSQLKPQIQAIQ 129 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G~~---------~~v~~~ai~~~~~s~~~~~i~e~~ 129 (137)
.+.++++.-|.+..+-...........++|++.+.+|.+|-..-+.. .++...-+-...+..+.++++.+.
T Consensus 85 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 164 (188)
T 2wjg_A 85 KPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAIS 164 (188)
T ss_dssp CCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHH
Confidence 45566666666432222333334455788988888887765432211 111111222233456777777766
Q ss_pred HHHH
Q psy1295 130 QQIE 133 (137)
Q Consensus 130 ~~~~ 133 (137)
..+.
T Consensus 165 ~~~~ 168 (188)
T 2wjg_A 165 IAVK 168 (188)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5543
No 205
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=27.37 E-value=41 Score=27.80 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=27.8
Q ss_pred cccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHH
Q psy1295 59 LSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALG 99 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG 99 (137)
.+.+||.|.|.++ +-..+...|++++||+..+.+ -+++
T Consensus 72 ~~~lVi~at~~~~--~n~~i~~~a~~~~i~vn~~d~-~e~~ 109 (457)
T 1pjq_A 72 SCWLAIAATDDDT--VNQRVSDAAESRRIFCNVVDA-PKAA 109 (457)
T ss_dssp TCSEEEECCSCHH--HHHHHHHHHHHTTCEEEETTC-TTSS
T ss_pred CccEEEEcCCCHH--HHHHHHHHHHHcCCEEEECCC-cccC
Confidence 4678888887643 567899999999999755554 4444
No 206
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=27.16 E-value=65 Score=24.25 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=28.2
Q ss_pred cCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHH
Q psy1295 57 RGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGR 100 (137)
Q Consensus 57 k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~ 100 (137)
.+++.++++.-|++..+-...+.....+.++|++.+.+|.++-.
T Consensus 83 ~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 83 SGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp HTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred hcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 35566666666665543444455556667888888887776643
No 207
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=27.06 E-value=44 Score=20.54 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=25.7
Q ss_pred HHHHHHHcCcc--cEEEEecCCChhhHHHhHHHHhHhcCCCEEE
Q psy1295 50 EATKTLNRGLS--EFIVLAADAEPLEIVLHLPLLCEDKNVPYVF 91 (137)
Q Consensus 50 ~v~kaI~k~ka--klViiA~D~~~~~~~~~i~~lc~~~~IP~i~ 91 (137)
.+.+++++-+. .|.|++.|-. ....++.+|++.|-.+..
T Consensus 22 ~~k~al~~l~~G~~L~V~~dd~~---a~~di~~~~~~~G~~~~~ 62 (78)
T 1pav_A 22 ELIKAYKQAKVGEVISVYSTDAG---TKKDAPAWIQKSGQELVG 62 (78)
T ss_dssp HHHHHHTTSCTTCCEECCBSSSC---HHHHHHHHHHHHTEEECC
T ss_pred HHHHHHHcCCCCCEEEEEECCcc---HHHHHHHHHHHCCCEEEE
Confidence 34556655222 3777777743 468999999999876643
No 208
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=26.90 E-value=1.3e+02 Score=21.79 Aligned_cols=42 Identities=10% Similarity=0.267 Sum_probs=25.5
Q ss_pred HHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCC
Q psy1295 51 ATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRS 94 (137)
Q Consensus 51 v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~t 94 (137)
..+.+..+++.-+|+..--.+. .......+.+.+||++.+++
T Consensus 61 ~i~~l~~~~vdgiii~~~~~~~--~~~~~~~~~~~~iPvV~~~~ 102 (304)
T 3gbv_A 61 TSQAVIEEQPDGVMFAPTVPQY--TKGFTDALNELGIPYIYIDS 102 (304)
T ss_dssp HHHHHHTTCCSEEEECCSSGGG--THHHHHHHHHHTCCEEEESS
T ss_pred HHHHHHhcCCCEEEECCCChHH--HHHHHHHHHHCCCeEEEEeC
Confidence 3455566777777776543332 23344556777999988753
No 209
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=26.81 E-value=97 Score=23.65 Aligned_cols=44 Identities=5% Similarity=0.043 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCcccEEEEecCCC------hhhHHHhHHHHhHhcCCCEEEe
Q psy1295 48 ANEATKTLNRGLSEFIVLAADAE------PLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 48 ~~~v~kaI~k~kaklViiA~D~~------~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
..++.+++++ +.++|++..=-+ +.+-.+.+..+|+++++.++.-
T Consensus 169 ~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 218 (407)
T 3nra_A 169 LTGLEEAFKA-GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIAD 218 (407)
T ss_dssp HHHHHHHHHT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHhh-CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEE
Confidence 3455566655 567777643222 2234788999999999988753
No 210
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=26.81 E-value=1.7e+02 Score=21.04 Aligned_cols=66 Identities=11% Similarity=0.043 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHH-HHHHHcCC-ccc--------cHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 24 DTALTTKILSLV-QQALNYKQ-LRK--------GANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 24 ~~~~~~kl~~lL-~~A~~ag~-lv~--------G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
.......+.+-+ ..+.+.|. +.. ...+..+.+..+++.-+|+.....+ .....+.+.+||++.++
T Consensus 18 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-----~~~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 18 DDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSNP-----QTVQEILHQQMPVVSVD 92 (276)
T ss_dssp TSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCCH-----HHHHHHHTTSSCEEEES
T ss_pred CchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCcH-----HHHHHHHHCCCCEEEEe
Confidence 444555555544 44455554 111 1234556666777777777654432 33345577899998875
Q ss_pred C
Q psy1295 94 S 94 (137)
Q Consensus 94 t 94 (137)
+
T Consensus 93 ~ 93 (276)
T 3jy6_A 93 R 93 (276)
T ss_dssp C
T ss_pred c
Confidence 4
No 211
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=26.66 E-value=1.1e+02 Score=19.91 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=26.2
Q ss_pred CcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHh
Q psy1295 58 GLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRAC 102 (137)
Q Consensus 58 ~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~ 102 (137)
..+.++.+..|-++. .+..+.+++++++....+..++.+..
T Consensus 66 ~~v~~v~v~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (165)
T 3or5_A 66 RGFTFVGIAVNEQLP----NVKNYMKTQGIIYPVMMATPELIRAF 106 (165)
T ss_dssp TTEEEEEEECSCCHH----HHHHHHHHHTCCSCEEECCHHHHHHH
T ss_pred CCeEEEEEECCCCHH----HHHHHHHHcCCCCceEecCHHHHHHH
Confidence 346677777665554 34556677788776655555777776
No 212
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=26.62 E-value=73 Score=22.18 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=38.4
Q ss_pred cccEEEEecCCChhhHHHhHHH----HhH--hcCCCEEEeCCHHHHHHH----------hCCCcce-EEEEEEeCCCCCh
Q psy1295 59 LSEFIVLAADAEPLEIVLHLPL----LCE--DKNVPYVFVRSKQALGRA----------CGVSRPI-IACSVTVDEGSQL 121 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~~----lc~--~~~IP~i~~~tk~eLG~a----------~G~~~~v-~~~ai~~~~~s~~ 121 (137)
.+..+|+.-|++..+....+.. +.+ ..++|++.+.+|.+|-.. +-...++ ...-+-...+..+
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 101 SANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp TCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence 3556666666654323333222 222 257899888877765321 0001122 2222323445678
Q ss_pred HHHHHHHHHHHH
Q psy1295 122 KPQIQAIQQQIE 133 (137)
Q Consensus 122 ~~~i~e~~~~~~ 133 (137)
.++++.+...+.
T Consensus 181 ~~l~~~l~~~i~ 192 (201)
T 2hup_A 181 EEAFLRVATELI 192 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888777664
No 213
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=26.47 E-value=26 Score=26.95 Aligned_cols=58 Identities=10% Similarity=0.003 Sum_probs=39.5
Q ss_pred cCC-ccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhCCCc
Q psy1295 41 YKQ-LRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACGVSR 106 (137)
Q Consensus 41 ag~-lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G~~~ 106 (137)
.|. ++.|.+.|..+++.....-+++..+..+ .+ .+..++|+..+...+.|.+..+...
T Consensus 25 ~g~f~veG~~~v~eal~~~~i~~l~~~~~~~~-----~l---~~~~~~~v~~v~~~~~l~~ls~~~~ 83 (257)
T 2i6d_A 25 EQAFAVEGPKLVGEMLPFYRCRMLVGTAAMLR-----AV---STPHDAEVVELPESFDFKRISTQTT 83 (257)
T ss_dssp HTEEEEESHHHHHHHGGGSCEEEEEEEHHHHH-----TS---CCCTTCEEEEECTTCCGGGTCCSSS
T ss_pred cCcEEEEcHHHHHHHHhcCCcCEEEEEcCchH-----HH---HHhcCCCEEEeChHHHHHHHhcCCC
Confidence 454 7899999999998844777888765322 12 1255788766655377888877653
No 214
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=26.18 E-value=55 Score=25.44 Aligned_cols=44 Identities=5% Similarity=0.097 Sum_probs=29.7
Q ss_pred HHHHHHHHHcC--cccEEEEecCCChhhHHHhHHHHhHhcCCCEEE
Q psy1295 48 ANEATKTLNRG--LSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVF 91 (137)
Q Consensus 48 ~~~v~kaI~k~--kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~ 91 (137)
..++.+++... +.++|++..-.....-.+.+.++|+++|++++.
T Consensus 109 ~~~l~~~i~~~~~~~~~v~~~~~~G~~~~l~~i~~l~~~~~~~li~ 154 (394)
T 1o69_A 109 VDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIE 154 (394)
T ss_dssp HHHHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhcccCCceEEEEECCCCChhhHHHHHHHHHHcCCEEEE
Confidence 34556666653 578888875332223467889999999998774
No 215
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=26.10 E-value=58 Score=22.51 Aligned_cols=49 Identities=14% Similarity=0.418 Sum_probs=26.8
Q ss_pred cCCCEEEeCCHHHHHHHh----------------CCCcceEEEEEEeCCCCChHHHHHHHHHHHH
Q psy1295 85 KNVPYVFVRSKQALGRAC----------------GVSRPIIACSVTVDEGSQLKPQIQAIQQQIE 133 (137)
Q Consensus 85 ~~IP~i~~~tk~eLG~a~----------------G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~ 133 (137)
.++|++.+.+|.+|-... ....++...-+-...+..+.++++.+..++.
T Consensus 132 ~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 132 ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp --CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 479999999988875221 0011222222222345677788887777653
No 216
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=26.09 E-value=1.2e+02 Score=18.56 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHcCC---ccccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 27 LTTKILSLVQQALNYKQ---LRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 27 ~~~kl~~lL~~A~~ag~---lv~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
....+.+.|.. .|. ......+....++.++..++++--+.+..+-...+..+.+..++|++.+
T Consensus 14 ~~~~l~~~L~~---~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~ 79 (122)
T 1zgz_A 14 TQARLQSYFTQ---EGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILV 79 (122)
T ss_dssp HHHHHHHHHHH---TTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHH---CCCeEEEecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEE
Confidence 34445555542 243 2234467777888888999998765533222233333334567888765
No 217
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=25.95 E-value=1.4e+02 Score=19.73 Aligned_cols=52 Identities=8% Similarity=0.091 Sum_probs=29.4
Q ss_pred HHHHHHHHcCcccEEEEec------CCChhhHHHhHHHHhHhcCCC-EEEe--CCH----HHHHHHhCCC
Q psy1295 49 NEATKTLNRGLSEFIVLAA------DAEPLEIVLHLPLLCEDKNVP-YVFV--RSK----QALGRACGVS 105 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~------D~~~~~~~~~i~~lc~~~~IP-~i~~--~tk----~eLG~a~G~~ 105 (137)
..+.+.+.++ +++|... .| |. =.....+-++++|| |..+ ... ++|-+..|..
T Consensus 11 ~~v~~~i~~~--~Vvvfsk~t~~~p~C-p~--C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~ 75 (118)
T 2wem_A 11 EQLDALVKKD--KVVVFLKGTPEQPQC-GF--SNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWP 75 (118)
T ss_dssp HHHHHHHHHS--SEEEEESBCSSSBSS-HH--HHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCC
T ss_pred HHHHHHhccC--CEEEEEecCCCCCcc-HH--HHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCC
Confidence 4455556555 4666666 46 42 34566677888996 6644 322 3454555643
No 218
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=25.86 E-value=1.2e+02 Score=22.57 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=26.1
Q ss_pred HHHHHHHcCc--ccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 50 EATKTLNRGL--SEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 50 ~v~kaI~k~k--aklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
..+.+.++|. +.++.+-+|-.. ..+..+|+++|||+..+.
T Consensus 18 ali~~~~~~~l~~eI~~Visn~~~----a~v~~~A~~~gIp~~~~~ 59 (211)
T 3p9x_A 18 AIIQSQKAGQLPCEVALLITDKPG----AKVVERVKVHEIPVCALD 59 (211)
T ss_dssp HHHHHHHTTCCSSEEEEEEESCSS----SHHHHHHHTTTCCEEECC
T ss_pred HHHHHHHcCCCCcEEEEEEECCCC----cHHHHHHHHcCCCEEEeC
Confidence 3444455664 567777777432 246689999999987653
No 219
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=25.78 E-value=80 Score=24.42 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=24.5
Q ss_pred CcccEEEEec---CC----ChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 58 GLSEFIVLAA---DA----EPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 58 ~kaklViiA~---D~----~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
.+.++|++-. +. .+.+..+.+..+|++++++++.-.
T Consensus 198 ~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De 240 (426)
T 1sff_A 198 EDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADE 240 (426)
T ss_dssp GGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 4566777732 21 233468899999999999887543
No 220
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=25.72 E-value=1.6e+02 Score=21.27 Aligned_cols=43 Identities=7% Similarity=0.002 Sum_probs=24.8
Q ss_pred HHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCC
Q psy1295 50 EATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRS 94 (137)
Q Consensus 50 ~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~t 94 (137)
+..+.+..+++.-+|+..-..+. .......+.+.+||++.+++
T Consensus 55 ~~~~~l~~~~vdgiI~~~~~~~~--~~~~~~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 55 EQILEFVHLKVDAIFITTLDDVY--IGSAIEEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHHHHTTCSEEEEECSCTTT--THHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHcCCCEEEEecCChHH--HHHHHHHHHHcCCCEEEecC
Confidence 44455555666666665432222 22344556778999998753
No 221
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=25.72 E-value=63 Score=22.16 Aligned_cols=46 Identities=11% Similarity=0.236 Sum_probs=29.8
Q ss_pred ccEEEEecCCCh---hhHHHhHHHHhHhcCCCEEEe-CCHHHHHHHhCCC
Q psy1295 60 SEFIVLAADAEP---LEIVLHLPLLCEDKNVPYVFV-RSKQALGRACGVS 105 (137)
Q Consensus 60 aklViiA~D~~~---~~~~~~i~~lc~~~~IP~i~~-~tk~eLG~a~G~~ 105 (137)
+.++.+..|-.. .+....+..+++++++++-.. ....++.+..|..
T Consensus 66 ~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 115 (188)
T 2cvb_A 66 VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRAL 115 (188)
T ss_dssp EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCC
T ss_pred eEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC
Confidence 666666665321 124566777888888876544 4456888888875
No 222
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=25.47 E-value=1.5e+02 Score=21.44 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=30.0
Q ss_pred HHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC--C-------HHHHHHHhCCC
Q psy1295 51 ATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR--S-------KQALGRACGVS 105 (137)
Q Consensus 51 v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~--t-------k~eLG~a~G~~ 105 (137)
-.+.|..-+-.|||......+ +..+ ..++.+||++.+. + -..||+++|++
T Consensus 52 n~E~i~~l~PDLIi~~~~~~~-~~~~----~L~~~gipvv~~~~~~~~~~~~~i~~lg~~~g~~ 110 (260)
T 2q8p_A 52 NVEAVKKLKPTHVLSVSTIKD-EMQP----FYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRK 110 (260)
T ss_dssp CHHHHHHTCCSEEEEEGGGHH-HHHH----HHHHHTSCCEEECCSSHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHhcCCCEEEecCccCH-HHHH----HHHHcCCcEEEecCCCHHHHHHHHHHHHHHhCCh
Confidence 355666667888887653322 2333 3355579987653 2 12578888875
No 223
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=25.38 E-value=86 Score=24.29 Aligned_cols=39 Identities=8% Similarity=0.128 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEE
Q psy1295 48 ANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYV 90 (137)
Q Consensus 48 ~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i 90 (137)
..++.+.+++++++.||.-...+++ .. ..++++.|+|+.
T Consensus 221 l~~l~~~ik~~~v~~if~e~~~~~~-~~---~~ia~~~g~~v~ 259 (294)
T 3hh8_A 221 ISSLIEKLKVIKPSALFVESSVDRR-PM---ETVSKDSGIPIY 259 (294)
T ss_dssp HHHHHHHHHHSCCSCEEEETTSCSH-HH---HHHHHHHCCCEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcH-HH---HHHHHHhCCcEE
Confidence 4567778889999999999888886 44 466899999987
No 224
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=25.35 E-value=1e+02 Score=23.27 Aligned_cols=41 Identities=10% Similarity=-0.009 Sum_probs=26.3
Q ss_pred HHHHHHHHHcC--cccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 48 ANEATKTLNRG--LSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 48 ~~~v~kaI~k~--kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
...+++++.++ ...++.+-+|-+.. ....+|+++|||+..+
T Consensus 36 ~~~~l~~l~~~~~~~~I~~Vvt~~~~~----~~~~~A~~~gIp~~~~ 78 (229)
T 3auf_A 36 LQAILDGCREGRIPGRVAVVISDRADA----YGLERARRAGVDALHM 78 (229)
T ss_dssp HHHHHHHHHTTSSSEEEEEEEESSTTC----HHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHhCCCCCeEEEEEcCCCch----HHHHHHHHcCCCEEEE
Confidence 34566666666 35666565553222 2467899999999864
No 225
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=25.25 E-value=1.8e+02 Score=22.29 Aligned_cols=90 Identities=19% Similarity=0.173 Sum_probs=45.8
Q ss_pred CcccCCCCChHHH--------------HHHHHHHHHHHHcC-C--ccccH-HHHH---------HHHHcCcccEEEEecC
Q psy1295 16 NPKAYPLADTALT--------------TKILSLVQQALNYK-Q--LRKGA-NEAT---------KTLNRGLSEFIVLAAD 68 (137)
Q Consensus 16 ~~~~~p~a~~~~~--------------~kl~~lL~~A~~ag-~--lv~G~-~~v~---------kaI~k~kaklViiA~D 68 (137)
.|++-|+++-..- +++.++++..++.- . +..|. +.+. .+.+.| +.- ++..|
T Consensus 50 ~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG-~dG-viv~D 127 (271)
T 1ujp_A 50 LPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAG-ATG-VILPD 127 (271)
T ss_dssp CCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHT-CCE-EECTT
T ss_pred CCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcC-CCE-EEecC
Confidence 5888898865432 23455666666552 1 22221 2222 223334 343 44468
Q ss_pred CChhhHHHhHHHHhHhcCCCEEEe--C-C-HHHHHHHhCCCcce
Q psy1295 69 AEPLEIVLHLPLLCEDKNVPYVFV--R-S-KQALGRACGVSRPI 108 (137)
Q Consensus 69 ~~~~~~~~~i~~lc~~~~IP~i~~--~-t-k~eLG~a~G~~~~v 108 (137)
+.+. ....+...|++++++.+.. + + .+++-.........
T Consensus 128 l~~e-e~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~gf 170 (271)
T 1ujp_A 128 LPPD-EDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGF 170 (271)
T ss_dssp CCGG-GCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSC
T ss_pred CCHH-HHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCCC
Confidence 8775 6778888999998765542 2 2 35566655544433
No 226
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=25.17 E-value=44 Score=22.33 Aligned_cols=75 Identities=11% Similarity=0.118 Sum_probs=36.6
Q ss_pred cccEEEEecCCChhhHHHhHHHH----hH--hcCCCEEEeCCHHHHHH----------HhCCCcceEEEEEEeCCCCChH
Q psy1295 59 LSEFIVLAADAEPLEIVLHLPLL----CE--DKNVPYVFVRSKQALGR----------ACGVSRPIIACSVTVDEGSQLK 122 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~~l----c~--~~~IP~i~~~tk~eLG~----------a~G~~~~v~~~ai~~~~~s~~~ 122 (137)
.+..+++.-|++..+....+..+ .+ ..++|++.+.+|.+|-. .+-...++...-+-...+..+.
T Consensus 83 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (180)
T 2g6b_A 83 DAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVD 162 (180)
T ss_dssp GCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 35566666666543232322221 11 26799988877765431 1101111112222233456777
Q ss_pred HHHHHHHHHHH
Q psy1295 123 PQIQAIQQQIE 133 (137)
Q Consensus 123 ~~i~e~~~~~~ 133 (137)
++++.+...+.
T Consensus 163 ~l~~~l~~~~~ 173 (180)
T 2g6b_A 163 LAFTAIAKELK 173 (180)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 227
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=25.07 E-value=1.6e+02 Score=20.37 Aligned_cols=74 Identities=8% Similarity=0.039 Sum_probs=38.5
Q ss_pred ccEEEEecCCChhhHHHhHHHH------hHhcCCCEEEeCCHHHHHH----------HhCCCcceEEEEEEeCCCCChHH
Q psy1295 60 SEFIVLAADAEPLEIVLHLPLL------CEDKNVPYVFVRSKQALGR----------ACGVSRPIIACSVTVDEGSQLKP 123 (137)
Q Consensus 60 aklViiA~D~~~~~~~~~i~~l------c~~~~IP~i~~~tk~eLG~----------a~G~~~~v~~~ai~~~~~s~~~~ 123 (137)
+..+++.-|++.......+..+ ....++|++.+.+|.+|-. ..-........-+-...+..+.+
T Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 164 (218)
T 4djt_A 85 ASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGL 164 (218)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Confidence 5556666666543233333211 1234689998877765432 22223333333343444567777
Q ss_pred HHHHHHHHHH
Q psy1295 124 QIQAIQQQIE 133 (137)
Q Consensus 124 ~i~e~~~~~~ 133 (137)
+++.+...+.
T Consensus 165 l~~~l~~~~~ 174 (218)
T 4djt_A 165 PFLHLARIFT 174 (218)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 228
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=25.05 E-value=68 Score=26.36 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=32.1
Q ss_pred HHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHH
Q psy1295 50 EATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALG 99 (137)
Q Consensus 50 ~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG 99 (137)
.+...+.+ +..+++--|++..+....+...+++.++|++.+.+|.+|-
T Consensus 106 ~~~~~l~~--aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 106 KARRVFYR--ADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp HHHHHHTS--CSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTT
T ss_pred HHHHHHhc--CCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCC
Confidence 34445544 4444444466554566777888888999999999887653
No 229
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=24.93 E-value=79 Score=20.98 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=24.6
Q ss_pred HcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEE-EeCCHH
Q psy1295 56 NRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYV-FVRSKQ 96 (137)
Q Consensus 56 ~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i-~~~tk~ 96 (137)
++....+++|-++.-+. +...+..+-++.-.|.+ .++++.
T Consensus 50 ~~~digIIlIte~ia~~-i~~~i~~~~~~~~~P~IieIPs~~ 90 (102)
T 2i4r_A 50 KRDDVGVVIMKQEYLKK-LPPVLRREIDEKVEPTFVSVGGTG 90 (102)
T ss_dssp HCSSEEEEEEEGGGSTT-SCHHHHTTTTTCCSSEEEEEC---
T ss_pred hCCCeEEEEEeHHHHHH-HHHHHHHHHhCCCccEEEEECCCC
Confidence 34567788888877775 66666666666567765 456665
No 230
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=24.84 E-value=1.4e+02 Score=25.41 Aligned_cols=54 Identities=22% Similarity=0.434 Sum_probs=35.7
Q ss_pred HHHHHHHcCcccEEEE-ecCCChhh---HHHhHHHHhHhcCCCEEEeCCHHHHHHHhCCC
Q psy1295 50 EATKTLNRGLSEFIVL-AADAEPLE---IVLHLPLLCEDKNVPYVFVRSKQALGRACGVS 105 (137)
Q Consensus 50 ~v~kaI~k~kaklVii-A~D~~~~~---~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G~~ 105 (137)
.+.++++.| +.+|-+ ..|.+..+ +.+.+..+|+.+++|++ +.+..+|...+|-+
T Consensus 30 ~ve~al~~G-v~~vQlR~K~~~~~~~~~~a~~l~~l~~~~~v~li-IND~~dlA~~~gAd 87 (540)
T 3nl6_A 30 QVEAGLQNG-VTLVQIREKDADTKFFIEEALQIKELCHAHNVPLI-INDRIDVAMAIGAD 87 (540)
T ss_dssp HHHHHHHTT-CSEEEECCSSSCTTHHHHHHHHHHHHHHHTTCCEE-ECSCSHHHHHTTCS
T ss_pred HHHHHHHCC-CCEEEEecCCCCHHHHHHHHHHHHHHHHhcCCEEE-EeCcHHHHHHcCCC
Confidence 344455555 666655 55665543 45677889999999974 56677777777644
No 231
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=24.78 E-value=1.5e+02 Score=19.36 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=7.3
Q ss_pred hHHHHhHhcCCCEEEe
Q psy1295 77 HLPLLCEDKNVPYVFV 92 (137)
Q Consensus 77 ~i~~lc~~~~IP~i~~ 92 (137)
.+...|.+.+|++..+
T Consensus 99 ~l~~~~~~~gi~v~vi 114 (117)
T 3hh1_A 99 TMASAAHAAGLPVVPV 114 (117)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHCCCcEEEe
Confidence 3334444455555443
No 232
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=24.78 E-value=41 Score=23.94 Aligned_cols=89 Identities=17% Similarity=0.255 Sum_probs=53.2
Q ss_pred ccccHHHHHHHH-H------cCcccEEEEecCCChhhH--HHhHHHHhHhcCCCEEEeC--C------------HHHHHH
Q psy1295 44 LRKGANEATKTL-N------RGLSEFIVLAADAEPLEI--VLHLPLLCEDKNVPYVFVR--S------------KQALGR 100 (137)
Q Consensus 44 lv~G~~~v~kaI-~------k~kaklViiA~D~~~~~~--~~~i~~lc~~~~IP~i~~~--t------------k~eLG~ 100 (137)
+..|...+.+.+ . .+..+.||+-.|..+.+- .......+++.+|+++.++ + ..+|-.
T Consensus 87 ~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~ 166 (213)
T 1pt6_A 87 TALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKS 166 (213)
T ss_dssp HHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSHHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccchhhHHHHHH
Confidence 444555555442 1 235778999898866531 2345566778899887653 3 256777
Q ss_pred HhCCCcceEEEEEEeCCCCChHHHHHHHHHHHHH
Q psy1295 101 ACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIER 134 (137)
Q Consensus 101 a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~~ 134 (137)
..+.+..-. .......+++.+.++++.++|..
T Consensus 167 iA~~~~~g~--~~~~~~~~~l~~i~~~l~~~i~~ 198 (213)
T 1pt6_A 167 IASEPTEKH--FFNVSDELALVTIVKTLGERIFA 198 (213)
T ss_dssp HSCSSHHHH--EEEESSGGGGGGGHHHHHHHHTC
T ss_pred HhCCCchhc--EEEeCCHHHHHHHHHHHHHhhee
Confidence 776642111 23345567777777877777643
No 233
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=24.75 E-value=1.7e+02 Score=19.90 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=33.2
Q ss_pred hHHHHhHhcCCCEEEeCCHHHHHHHhC----------CCcceEEEEEEeCCCC-ChHHHHHHHHHHHHH
Q psy1295 77 HLPLLCEDKNVPYVFVRSKQALGRACG----------VSRPIIACSVTVDEGS-QLKPQIQAIQQQIER 134 (137)
Q Consensus 77 ~i~~lc~~~~IP~i~~~tk~eLG~a~G----------~~~~v~~~ai~~~~~s-~~~~~i~e~~~~~~~ 134 (137)
.+...+...++|++.+.+|.+|-..-. ...++...-+-...+. .+.++++.+..++.+
T Consensus 123 ~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 123 ILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp HHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 344445557899999998887753211 0112222222223345 788888888777654
No 234
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=24.72 E-value=1.2e+02 Score=23.78 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=23.2
Q ss_pred cccEEEEecCCC------hhhHHHhHHHHhHhcCCCEEE
Q psy1295 59 LSEFIVLAADAE------PLEIVLHLPLLCEDKNVPYVF 91 (137)
Q Consensus 59 kaklViiA~D~~------~~~~~~~i~~lc~~~~IP~i~ 91 (137)
+.++|++..=.+ +.+-.+.+.++|+++++.++.
T Consensus 191 ~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 229 (435)
T 3piu_A 191 RVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLIS 229 (435)
T ss_dssp CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 677887763222 223578889999999998874
No 235
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=24.66 E-value=2.3e+02 Score=21.36 Aligned_cols=45 Identities=20% Similarity=0.120 Sum_probs=23.2
Q ss_pred HHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHH
Q psy1295 55 LNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALG 99 (137)
Q Consensus 55 I~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG 99 (137)
+..+++.++++.-|++..+-...+.....+.++|++.+.+|.++-
T Consensus 76 ~~~~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 76 LLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp HHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHH
T ss_pred HhcCCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhC
Confidence 333456666666665443222223233344677777776666553
No 236
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=24.53 E-value=1.6e+02 Score=22.21 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=33.8
Q ss_pred HHHHHHcCcccEEEE-ecCC---------Chhh---HHHhHHHHhHhcCCCEEEeCCHHHHHHHhCCC
Q psy1295 51 ATKTLNRGLSEFIVL-AADA---------EPLE---IVLHLPLLCEDKNVPYVFVRSKQALGRACGVS 105 (137)
Q Consensus 51 v~kaI~k~kaklVii-A~D~---------~~~~---~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G~~ 105 (137)
+.++++.| +.+|.+ .+|. ++.+ ....+..+|+.+++|++ +.+..+|...+|-+
T Consensus 49 ~~~al~~G-v~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~li-Ind~~~lA~~~gAd 114 (243)
T 3o63_A 49 AEAALAGG-VDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFA-VNDRADIARAAGAD 114 (243)
T ss_dssp HHHHHHTT-CSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEE-EESCHHHHHHHTCS
T ss_pred HHHHHHCC-CCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEE-EeCHHHHHHHhCCC
Confidence 33445544 666666 5552 2433 34678899999999974 45667777777643
No 237
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=24.50 E-value=49 Score=26.35 Aligned_cols=36 Identities=6% Similarity=0.175 Sum_probs=28.7
Q ss_pred CcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCH
Q psy1295 58 GLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSK 95 (137)
Q Consensus 58 ~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk 95 (137)
.+..+||.+.|- .. .+..+...|..++||++..++.
T Consensus 124 ~~~dvVv~~~d~-~~-~r~~ln~~~~~~~ip~i~~~~~ 159 (346)
T 1y8q_A 124 TQFDAVCLTCCS-RD-VIVKVDQICHKNSIKFFTGDVF 159 (346)
T ss_dssp TTCSEEEEESCC-HH-HHHHHHHHHHHTTCEEEEEEEE
T ss_pred cCCCEEEEcCCC-HH-HHHHHHHHHHHcCCCEEEEeec
Confidence 357899988874 43 6888999999999999987543
No 238
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography; 1.80A {Brucella melitensis biovar}
Probab=24.42 E-value=1e+02 Score=23.59 Aligned_cols=64 Identities=5% Similarity=-0.010 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCCccc------cHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 29 TKILSLVQQALNYKQLRK------GANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 29 ~kl~~lL~~A~~ag~lv~------G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
....+.+...++.|++.. ...++.++++......++.--..++......+..+|+++||+++-.
T Consensus 141 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 210 (283)
T 3o0k_A 141 METWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHDIATEAW 210 (283)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHHSCCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHCCCcceEEeccCcHHHHHHHHHhCCCCeEEEEeecCcccCcHHHHHHHHHCCcEEEEe
Confidence 445667777788887532 4566666666554443333323333222346788999999987743
No 239
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=24.38 E-value=32 Score=23.55 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=22.7
Q ss_pred cccEEEEecCCChhh-------HHHhHHHHhHhcCCCEEEeCCHHHH
Q psy1295 59 LSEFIVLAADAEPLE-------IVLHLPLLCEDKNVPYVFVRSKQAL 98 (137)
Q Consensus 59 kaklViiA~D~~~~~-------~~~~i~~lc~~~~IP~i~~~tk~eL 98 (137)
.+..+++.-|++..+ +...+...+...++|++.+.+|.+|
T Consensus 93 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 139 (189)
T 1z06_A 93 NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139 (189)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTC
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 355666666654321 2223333344568999888877665
No 240
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=24.32 E-value=71 Score=25.20 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=29.1
Q ss_pred HHHHHHHHHc---CcccEEEEecC-------CChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 48 ANEATKTLNR---GLSEFIVLAAD-------AEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 48 ~~~v~kaI~k---~kaklViiA~D-------~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
..++.+++++ ++.++|++-.. ..+.+..+.+..+|+++++.++.-.
T Consensus 205 ~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~De 260 (449)
T 3a8u_X 205 ADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDE 260 (449)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEec
Confidence 3444455543 35566666432 2234468899999999999987543
No 241
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=24.16 E-value=1.3e+02 Score=21.06 Aligned_cols=47 Identities=11% Similarity=0.024 Sum_probs=30.1
Q ss_pred cHHHHHHHHHcC--cccEEEEecCCC-----------h-------hhHHHhHHHHhHhcCCCEEEeC
Q psy1295 47 GANEATKTLNRG--LSEFIVLAADAE-----------P-------LEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 47 G~~~v~kaI~k~--kaklViiA~D~~-----------~-------~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
...+.++.+++. .++++++..-.. . .++...+..+|+++++|++-..
T Consensus 115 ~l~~li~~l~~~~P~~~iil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~v~~iD~~ 181 (232)
T 3dc7_A 115 ALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADYGVPHLSLY 181 (232)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEECCCCCSCSBTTBCSSCCTTSCCHHHHHHHHHHHHHHHTCCEEEHH
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCcccCCccCCcccccccccchHHHHHHHHHHHHHHHcCCcEEecc
Confidence 444555555544 577777643110 0 3477888999999999998653
No 242
>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima}
Probab=24.15 E-value=56 Score=27.38 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.7
Q ss_pred CCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 68 DAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 68 D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
|+++. +...+..+|++++|||-..
T Consensus 367 ~~~~~-~~~~~~~ia~~~~Ip~Q~~ 390 (450)
T 2glf_A 367 DAHAE-FVARVRKVLNEQGVIWQVA 390 (450)
T ss_dssp BCCHH-HHHHHHHHHHHTTCCEEEC
T ss_pred cCCHH-HHHHHHHHHHHcCCCEEEE
Confidence 46776 8999999999999999874
No 243
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=24.09 E-value=89 Score=20.77 Aligned_cols=75 Identities=11% Similarity=0.113 Sum_probs=38.7
Q ss_pred ccEEEEecCCChhhHHHhHHHH-------hH--hcCCCEEEeCCHHHHH------------HHhCCCc-ceEEEEEEeCC
Q psy1295 60 SEFIVLAADAEPLEIVLHLPLL-------CE--DKNVPYVFVRSKQALG------------RACGVSR-PIIACSVTVDE 117 (137)
Q Consensus 60 aklViiA~D~~~~~~~~~i~~l-------c~--~~~IP~i~~~tk~eLG------------~a~G~~~-~v~~~ai~~~~ 117 (137)
+..+++.-|++..+....+..+ .. ..++|++.+++|.+|- +..-... .+...-+-...
T Consensus 73 ~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (178)
T 2iwr_A 73 ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATY 152 (178)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccc
Confidence 4556666666543344444432 11 1479999998887661 1110111 22222233344
Q ss_pred CCChHHHHHHHHHHHHH
Q psy1295 118 GSQLKPQIQAIQQQIER 134 (137)
Q Consensus 118 ~s~~~~~i~e~~~~~~~ 134 (137)
+..+.++++.+...+.+
T Consensus 153 ~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 153 GLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp TBTHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 56777888877766543
No 244
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=24.05 E-value=54 Score=21.48 Aligned_cols=72 Identities=11% Similarity=0.170 Sum_probs=38.2
Q ss_pred cccEEEEecCCChhhHHHhHH----HHhHh--cCCCEEEeCCHHHHH-------------HHhCCCcceEEEEEEeCCCC
Q psy1295 59 LSEFIVLAADAEPLEIVLHLP----LLCED--KNVPYVFVRSKQALG-------------RACGVSRPIIACSVTVDEGS 119 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~----~lc~~--~~IP~i~~~tk~eLG-------------~a~G~~~~v~~~ai~~~~~s 119 (137)
.+..+++.-|++..+....+. .+.+. .++|++.+.+|.+|. +..|.+ ..-+-...+.
T Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~Sa~~~~ 150 (170)
T 1g16_A 75 GAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP----FIESSAKNDD 150 (170)
T ss_dssp TEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC----EEECBTTTTB
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCe----EEEEECCCCC
Confidence 456666666665432322222 22222 378998888776652 122322 2222233456
Q ss_pred ChHHHHHHHHHHHHH
Q psy1295 120 QLKPQIQAIQQQIER 134 (137)
Q Consensus 120 ~~~~~i~e~~~~~~~ 134 (137)
.+.++++.+...+.+
T Consensus 151 gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 151 NVNEIFFTLAKLIQE 165 (170)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 777888877776654
No 245
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=24.04 E-value=1.6e+02 Score=21.30 Aligned_cols=40 Identities=8% Similarity=0.027 Sum_probs=22.9
Q ss_pred HHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 52 TKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 52 ~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
.+.+...++.-+|+...-.. ........+.+.+||++.+.
T Consensus 50 i~~l~~~~vdgiii~~~~~~--~~~~~~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 50 IDSLAASGAKGFVICTPDPK--LGSAIVAKARGYDMKVIAVD 89 (306)
T ss_dssp HHHHHHTTCCEEEEECSCGG--GHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHcCCCEEEEeCCCch--hhHHHHHHHHHCCCcEEEeC
Confidence 33444445666666543222 23344456777899998776
No 246
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=24.02 E-value=79 Score=25.00 Aligned_cols=45 Identities=7% Similarity=0.151 Sum_probs=31.3
Q ss_pred HHHHHHHHH---cCcccEEEEecC-------CChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 48 ANEATKTLN---RGLSEFIVLAAD-------AEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 48 ~~~v~kaI~---k~kaklViiA~D-------~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
..++.++++ ..+..+|++-.. ..+.+..+.+..+|+++|+.++.-
T Consensus 201 ~~~le~~l~~~~~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~~~~llI~D 255 (452)
T 3n5m_A 201 VKEVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISD 255 (452)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 455566665 355677777654 214457899999999999998854
No 247
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=23.98 E-value=1.1e+02 Score=20.36 Aligned_cols=53 Identities=17% Similarity=0.327 Sum_probs=29.8
Q ss_pred hHHHHhHhcCCCEEEeCCHHHHH-------------HHhCCCcceEEEEEEeCCCCChHHHHHHHHHHHH
Q psy1295 77 HLPLLCEDKNVPYVFVRSKQALG-------------RACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIE 133 (137)
Q Consensus 77 ~i~~lc~~~~IP~i~~~tk~eLG-------------~a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~ 133 (137)
.+...+...++|++.+.+|.+|- +..|.+ ...+-...+..+.++++.+...+.
T Consensus 100 ~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 100 QIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP----FIETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp HHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCC----EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCe----EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 34444555689999887776542 223322 222223345677777777766654
No 248
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=23.97 E-value=1.2e+02 Score=25.06 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=36.4
Q ss_pred CCccccHHHHHHHHH--c--CcccEEEEec---CCChh--hHHHhHHHHhHhcCCCEEEeC
Q psy1295 42 KQLRKGANEATKTLN--R--GLSEFIVLAA---DAEPL--EIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 42 g~lv~G~~~v~kaI~--k--~kaklViiA~---D~~~~--~~~~~i~~lc~~~~IP~i~~~ 93 (137)
.++..|..-|.+.+. + ..+.|||-.+ |..-. .+-..+-++|+++++|++-+-
T Consensus 266 a~l~~Gi~~v~~~~~l~~~l~~ADLVITGEG~~D~Qtl~GK~p~gVa~~A~~~~vPviaia 326 (383)
T 3cwc_A 266 AQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIA 326 (383)
T ss_dssp CEEECHHHHHHHHTTHHHHHHHCSEEEECCEESCC----CHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEccHHHHHHHHhChHhhhcCCCEEEECCCCCcCcCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 478888888888651 1 4689999988 55331 134556789999999998653
No 249
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=23.85 E-value=2.2e+02 Score=20.93 Aligned_cols=45 Identities=24% Similarity=0.146 Sum_probs=23.7
Q ss_pred HHcCcccEEEEecCCChhhHHHhHHHHhHhcC-CCEEEeCCHHHHH
Q psy1295 55 LNRGLSEFIVLAADAEPLEIVLHLPLLCEDKN-VPYVFVRSKQALG 99 (137)
Q Consensus 55 I~k~kaklViiA~D~~~~~~~~~i~~lc~~~~-IP~i~~~tk~eLG 99 (137)
+..+++..+++.-|++..+-...+.....+.+ +|++.+.+|.+|-
T Consensus 77 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp HHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred hhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 33455666666666654322222223333445 8887777776654
No 250
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=23.79 E-value=1.3e+02 Score=21.64 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=25.9
Q ss_pred HHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCC
Q psy1295 50 EATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRS 94 (137)
Q Consensus 50 ~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~t 94 (137)
+..+.+..+++.-+|+...-+. ........+.+.+||++.+++
T Consensus 52 ~~~~~l~~~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 52 SQIQTLIAQKPDAIIEQLGNLD--VLNPWLQKINDAGIPLFTVDT 94 (291)
T ss_dssp HHHHHHHHHCCSEEEEESSCHH--HHHHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHcCCCEEEEeCCChh--hhHHHHHHHHHCCCcEEEecC
Confidence 3444555566766666543222 234455667788999988764
No 251
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus subtilis} PDB: 3b3d_A
Probab=23.61 E-value=99 Score=24.09 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 29 TKILSLVQQALNYKQLR------KGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 29 ~kl~~lL~~A~~ag~lv------~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
....+.+...++.|++. .+..++.++++......++.--..++......+..+|+++||.++-.
T Consensus 154 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 223 (310)
T 3b3e_A 154 KDTWRALEKLYKDGKIRAIGVSNFQVHHLEELLKDAEIKPMVNQVEFHPRLTQKELRDYCKGQGIQLEAW 223 (310)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHcCCcceEeecCCCHHHHHHHHHhcCCCcceeeeeccCccCCHHHHHHHHHcCCEEEEe
Confidence 34566777778888753 25677777777776665555444444333356889999999998753
No 252
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=23.54 E-value=1.2e+02 Score=22.97 Aligned_cols=40 Identities=10% Similarity=0.269 Sum_probs=26.1
Q ss_pred HHHHHHc-CcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 51 ATKTLNR-GLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 51 v~kaI~k-~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
+...+.+ +++.-+|+..+.. ....+...+...+||++.+.
T Consensus 53 i~~~i~~~~~vDgiIi~~~~~---~~~~~~~~~~~~giPvV~~~ 93 (350)
T 3h75_A 53 ARELFQGRDKPDYLMLVNEQY---VAPQILRLSQGSGIKLFIVN 93 (350)
T ss_dssp HHHHHHSSSCCSEEEEECCSS---HHHHHHHHHTTSCCEEEEEE
T ss_pred HHHHHhcCCCCCEEEEeCchh---hHHHHHHHHHhCCCcEEEEc
Confidence 3444554 5788777776432 23455667788999998764
No 253
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=23.45 E-value=1e+02 Score=19.97 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=37.6
Q ss_pred cccEEEEecCCChhh----HHHhHHHHhH---hcCCCEEEeCCHHHHH---------HHhCCC----cceEEEEEEeCCC
Q psy1295 59 LSEFIVLAADAEPLE----IVLHLPLLCE---DKNVPYVFVRSKQALG---------RACGVS----RPIIACSVTVDEG 118 (137)
Q Consensus 59 kaklViiA~D~~~~~----~~~~i~~lc~---~~~IP~i~~~tk~eLG---------~a~G~~----~~v~~~ai~~~~~ 118 (137)
.+..+++.-|++..+ ....+..+.+ ..++|++.+++|.+|- ...+.. ......-+-...+
T Consensus 67 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 146 (164)
T 1r8s_A 67 NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 146 (164)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCC
Confidence 455555555554321 2223333333 2489999988876653 223321 2222222223345
Q ss_pred CChHHHHHHHHHHH
Q psy1295 119 SQLKPQIQAIQQQI 132 (137)
Q Consensus 119 s~~~~~i~e~~~~~ 132 (137)
..+.++++.+...+
T Consensus 147 ~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 147 DGLYEGLDWLSNQL 160 (164)
T ss_dssp BTHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHH
Confidence 67777777776654
No 254
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=23.45 E-value=86 Score=20.95 Aligned_cols=75 Identities=11% Similarity=0.068 Sum_probs=34.1
Q ss_pred cccEEEEecCCChhhHHHhHH----HHhH--hcCCCEEEeCCHHHHHH----------HhCCCcceEEEEEEeCCCCChH
Q psy1295 59 LSEFIVLAADAEPLEIVLHLP----LLCE--DKNVPYVFVRSKQALGR----------ACGVSRPIIACSVTVDEGSQLK 122 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~----~lc~--~~~IP~i~~~tk~eLG~----------a~G~~~~v~~~ai~~~~~s~~~ 122 (137)
.+..+++.-|++..+....+. .+.+ ..++|++.+.+|.+|-. .+-...++...-+-...+..+.
T Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 80 GAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVE 159 (183)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 456666666665432323332 2222 24799998887776531 1101111211222223345677
Q ss_pred HHHHHHHHHHH
Q psy1295 123 PQIQAIQQQIE 133 (137)
Q Consensus 123 ~~i~e~~~~~~ 133 (137)
++++.+...+.
T Consensus 160 ~l~~~l~~~i~ 170 (183)
T 2fu5_C 160 NAFFTLARDIK 170 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666554
No 255
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=23.38 E-value=1.1e+02 Score=24.09 Aligned_cols=38 Identities=3% Similarity=-0.025 Sum_probs=31.2
Q ss_pred HHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEE
Q psy1295 49 NEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYV 90 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i 90 (137)
.++.+.+++++++.||.-...+++ +.+. ++++.|+|+.
T Consensus 243 ~~l~~~ik~~~v~~If~e~~~~~~-~~~~---iA~e~g~~v~ 280 (321)
T 1xvl_A 243 QTVIEEVKTNNVPTIFCESTVSDK-GQKQ---VAQATGARFG 280 (321)
T ss_dssp HHHHHHHHTTTCSEEEEETTSCSH-HHHH---HHTTTCCEEE
T ss_pred HHHHHHHHHcCCcEEEEeCCCChH-HHHH---HHHhcCCcee
Confidence 566777889999999999999887 5554 4899999985
No 256
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium smegmatis} PDB: 2wzt_A
Probab=23.36 E-value=1.1e+02 Score=23.38 Aligned_cols=64 Identities=13% Similarity=-0.037 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 29 TKILSLVQQALNYKQLR------KGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 29 ~kl~~lL~~A~~ag~lv------~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
....+.+..+++.|++. .+..+..++++....+..+.=-..++......+..+|+++||.+.-.
T Consensus 126 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 195 (283)
T 2wzm_A 126 VDSWGGLMKVKEDGIARSIGVCNFGAEDLETIVSLTYFTPAVNQIELHPLLNQAALREVNAGYNIVTEAY 195 (283)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCccEEEEcCCCHHHHHHHHHhcCCCcccccccCCcccCCHHHHHHHHHCCCEEEEe
Confidence 35666777778888752 24566677776554433333222333212246889999999987743
No 257
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=23.32 E-value=89 Score=21.01 Aligned_cols=74 Identities=9% Similarity=0.190 Sum_probs=36.8
Q ss_pred ccEEEEecCCChhhHHHhHH-------HHhHhcCCCEEEeCCHHHHHH---------HhCCCcceEEEEEEeCCCCChHH
Q psy1295 60 SEFIVLAADAEPLEIVLHLP-------LLCEDKNVPYVFVRSKQALGR---------ACGVSRPIIACSVTVDEGSQLKP 123 (137)
Q Consensus 60 aklViiA~D~~~~~~~~~i~-------~lc~~~~IP~i~~~tk~eLG~---------a~G~~~~v~~~ai~~~~~s~~~~ 123 (137)
+..+++.-|++..+....+. ..+...++|++.+.+|.+|-. ..-....+...-+-...+..+.+
T Consensus 88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 45555555654432222222 222235789888887766521 11111222222222334567777
Q ss_pred HHHHHHHHHH
Q psy1295 124 QIQAIQQQIE 133 (137)
Q Consensus 124 ~i~e~~~~~~ 133 (137)
+++.+..++.
T Consensus 168 l~~~l~~~~~ 177 (195)
T 1x3s_A 168 AFEELVEKII 177 (195)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 258
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=23.29 E-value=1.6e+02 Score=19.09 Aligned_cols=44 Identities=5% Similarity=0.080 Sum_probs=31.6
Q ss_pred CcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCC----HHHHHHHhCCC
Q psy1295 58 GLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRS----KQALGRACGVS 105 (137)
Q Consensus 58 ~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~t----k~eLG~a~G~~ 105 (137)
..+.++.+..|-++ ..+..+.+++++++..+.+ ..++.+..|..
T Consensus 68 ~~~~~v~v~~d~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~ 115 (150)
T 3fw2_A 68 KYIGMLGISLDVDK----QQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIY 115 (150)
T ss_dssp SSEEEEEEECCSCH----HHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCC
T ss_pred CCeEEEEEEcCCCH----HHHHHHHHHhCCCceEEEcCcccchHHHHHcCCC
Confidence 34778888877654 3456667889999877654 45888888876
No 259
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=23.24 E-value=1.3e+02 Score=22.44 Aligned_cols=40 Identities=8% Similarity=0.017 Sum_probs=26.0
Q ss_pred HHHHHHHcCc--ccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 50 EATKTLNRGL--SEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 50 ~v~kaI~k~k--aklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
.++++++.+. +.++.+-+|-... ....+|+++|||+..+.
T Consensus 23 all~~~~~~~l~~~I~~Visn~~~a----~~l~~A~~~gIp~~~~~ 64 (209)
T 4ds3_A 23 ALIRAAQAPGFPAEIVAVFSDKAEA----GGLAKAEAAGIATQVFK 64 (209)
T ss_dssp HHHHHHTSTTCSEEEEEEEESCTTC----THHHHHHHTTCCEEECC
T ss_pred HHHHHHHcCCCCcEEEEEEECCccc----HHHHHHHHcCCCEEEeC
Confidence 3555666664 5777777764222 12478999999998764
No 260
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=23.17 E-value=1.2e+02 Score=22.80 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCcccEEEEecCCCh------hhHHHhHHHHhHhcCCCEEEe
Q psy1295 48 ANEATKTLNRGLSEFIVLAADAEP------LEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 48 ~~~v~kaI~k~kaklViiA~D~~~------~~~~~~i~~lc~~~~IP~i~~ 92 (137)
..++.+++ +.+.++|++..=-+| .+-...+.++|++++++++.-
T Consensus 146 ~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D 195 (383)
T 3kax_A 146 FEHLEKQF-QQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVAD 195 (383)
T ss_dssp HHHHHHHH-TTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHh-CcCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 35566666 567888887542222 124677888899999988753
No 261
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=23.10 E-value=1.8e+02 Score=19.56 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=28.9
Q ss_pred CCCEEEeCCHHHH---------HHHhCC-----CcceEEEEEEeCCCCChHHHHHHHHHHHHH
Q psy1295 86 NVPYVFVRSKQAL---------GRACGV-----SRPIIACSVTVDEGSQLKPQIQAIQQQIER 134 (137)
Q Consensus 86 ~IP~i~~~tk~eL---------G~a~G~-----~~~v~~~ai~~~~~s~~~~~i~e~~~~~~~ 134 (137)
++|++.+.+|.+| -+.++. ...+...-+-...+..+.++++.+...+.+
T Consensus 127 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 127 RVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp BCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 8999988777544 334442 233332233334456788888887776653
No 262
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=23.05 E-value=1.7e+02 Score=19.32 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=41.9
Q ss_pred cHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe--CCHHHHHH
Q psy1295 47 GANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV--RSKQALGR 100 (137)
Q Consensus 47 G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~--~tk~eLG~ 100 (137)
.++..+|.++.+---||+...-++++ -...+..-+++.||.|-.. -+.++|-+
T Consensus 39 dirdiiksmkdngkplvvfvngasqn-dvnefqneakkegvsydvlkstdpeeltq 93 (112)
T 2lnd_A 39 DIRDIIKSMKDNGKPLVVFVNGASQN-DVNEFQNEAKKEGVSYDVLKSTDPEELTQ 93 (112)
T ss_dssp HHHHHHHHHTTCCSCEEEEECSCCHH-HHHHHHHHHHHHTCEEEEEECCCHHHHHH
T ss_pred hHHHHHHHHHhcCCeEEEEecCcccc-cHHHHHHHHHhcCcchhhhccCCHHHHHH
Confidence 46778888887777888888999998 5788999999999998755 35566654
No 263
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=23.02 E-value=2.7e+02 Score=21.66 Aligned_cols=63 Identities=8% Similarity=0.084 Sum_probs=48.4
Q ss_pred cccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCC-EEEeCCHHHHHHHhCCCcce
Q psy1295 45 RKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVP-YVFVRSKQALGRACGVSRPI 108 (137)
Q Consensus 45 v~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP-~i~~~tk~eLG~a~G~~~~v 108 (137)
+.-.-|+..+-.-|---+++|++-.++. ....+..+|.+.|.. ++.+-|.+||-+++.....+
T Consensus 113 iid~yQI~eAr~~GADaILLI~a~L~~~-~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~a~i 176 (258)
T 4a29_A 113 IVKESQIDDAYNLGADTVLLIVKILTER-ELESLLEYARSYGMEPLILINDENDLDIALRIGARF 176 (258)
T ss_dssp CCSHHHHHHHHHHTCSEEEEEGGGSCHH-HHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTTCSE
T ss_pred cccHHHHHHHHHcCCCeeehHHhhcCHH-HHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCCCcE
Confidence 3455667777666766677788888886 678899999999984 66899999999987765443
No 264
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=22.89 E-value=1.1e+02 Score=24.00 Aligned_cols=42 Identities=7% Similarity=0.106 Sum_probs=27.6
Q ss_pred HHHHHHHc--CcccEEEEecC-------CChhhHHHhHHHHhHhcCCCEEE
Q psy1295 50 EATKTLNR--GLSEFIVLAAD-------AEPLEIVLHLPLLCEDKNVPYVF 91 (137)
Q Consensus 50 ~v~kaI~k--~kaklViiA~D-------~~~~~~~~~i~~lc~~~~IP~i~ 91 (137)
++.+++++ ++.++|++-.. .++.+..+.+..+|+++|++++.
T Consensus 192 ~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~ 242 (434)
T 2epj_A 192 ALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLIL 242 (434)
T ss_dssp HHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 44445543 35667766322 22345789999999999999874
No 265
>2xfr_A Beta-amylase; hydrolase, carbohydrate metabolism, glycosyl hydrolase famil starch degradation, germination; 0.97A {Hordeum vulgare} PDB: 2xff_A 2xfy_A* 2xg9_A* 2xgb_A* 2xgi_A* 1b1y_A*
Probab=22.85 E-value=1.1e+02 Score=26.50 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=40.4
Q ss_pred cccHHHHHHHHHcCcccEEEEecC-----------CChhhHHHhHHHHhHhcCCCEE
Q psy1295 45 RKGANEATKTLNRGLSEFIVLAAD-----------AEPLEIVLHLPLLCEDKNVPYV 90 (137)
Q Consensus 45 v~G~~~v~kaI~k~kaklViiA~D-----------~~~~~~~~~i~~lc~~~~IP~i 90 (137)
.-|...+.+.+++..+.+.|-+-+ |+|..+...+...|+.+||++.
T Consensus 320 rdGY~pIa~mf~rh~~~l~FTClEM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~va 376 (535)
T 2xfr_A 320 RDGYRTIARMLKRHRASINFTCAEMRDSEQSSQAMSAPEELVQQVLSAGWREGLNVA 376 (535)
T ss_dssp BCTTHHHHHHHHTTTCEEEECCTTCCGGGSCGGGTCCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCchHHHHHHHHHcCCeEEEEecCCCcCCCCcccCCCHHHHHHHHHHHHHHhCCcee
Confidence 368899999999999999998754 6777899999999999999986
No 266
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=22.81 E-value=45 Score=24.84 Aligned_cols=40 Identities=5% Similarity=0.052 Sum_probs=24.4
Q ss_pred HHHHHHHHcC--cccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 49 NEATKTLNRG--LSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 49 ~~v~kaI~k~--kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
.....+++++ ...++.+-+|-+.. ....+|+++|||+..+
T Consensus 15 ~aLi~~~~~~~~~~~I~~Vvs~~~~~----~~~~~A~~~gIp~~~~ 56 (209)
T 1meo_A 15 QALIDSTREPNSSAQIDIVISNKAAV----AGLDKAERAGIPTRVI 56 (209)
T ss_dssp HHHHHHHHSTTCSCEEEEEEESSTTC----HHHHHHHHTTCCEEEC
T ss_pred HHHHHHHhcCCCCcEEEEEEeCCCCh----HHHHHHHHcCCCEEEE
Confidence 3444455555 35666666554332 1247899999999754
No 267
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.73 E-value=1.2e+02 Score=21.96 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=21.5
Q ss_pred cCCChhhHHHhHHHHhHhcCCCEEEeCCHHHHHHHhCC
Q psy1295 67 ADAEPLEIVLHLPLLCEDKNVPYVFVRSKQALGRACGV 104 (137)
Q Consensus 67 ~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a~G~ 104 (137)
.+.++.+..+.+..+|+.++++++. .+..++...+|-
T Consensus 35 k~~~~~~~~~~i~~l~~~~~~~liv-nd~~~~A~~~ga 71 (210)
T 3ceu_A 35 PETPAMYSERLLTLIPEKYHRRIVT-HEHFYLKEEFNL 71 (210)
T ss_dssp SSCCHHHHHHHHHHSCGGGGGGEEE-SSCTTHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHhCCeEEE-eCCHHHHHHcCC
Confidence 4445555666667777777777643 344455555553
No 268
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=22.70 E-value=1.7e+02 Score=19.34 Aligned_cols=19 Identities=26% Similarity=0.111 Sum_probs=8.5
Q ss_pred HHHhHHHHhHhcCCCEEEe
Q psy1295 74 IVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 74 ~~~~i~~lc~~~~IP~i~~ 92 (137)
..+.+..+.+..++-++.+
T Consensus 34 ~~~~~~~l~~~~digIIlI 52 (109)
T 2d00_A 34 AQSLLETLVERGGYALVAV 52 (109)
T ss_dssp HHHHHHHHHHHCCCSEEEE
T ss_pred HHHHHHHHhhCCCeEEEEE
Confidence 4444444444444444433
No 269
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=22.47 E-value=1.3e+02 Score=23.52 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=28.9
Q ss_pred HHHHHHHH---cCcccEEEEecCCC-------hhhHHHhHHHHhHhcCCCEEEe
Q psy1295 49 NEATKTLN---RGLSEFIVLAADAE-------PLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 49 ~~v~kaI~---k~kaklViiA~D~~-------~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
.+..++++ ..+.++|++-..-+ +.+..+.+.++|++++++++.-
T Consensus 188 ~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D 241 (439)
T 3dxv_A 188 TLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCD 241 (439)
T ss_dssp HHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 34445553 44566777655322 2335889999999999998854
No 270
>3b0z_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.45A {Salmonella enterica subsp}
Probab=28.05 E-value=18 Score=24.94 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=22.1
Q ss_pred EEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 62 FIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 62 lViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
-+|+|+=.+. +..+|..+++++|||++.-
T Consensus 18 P~VvAKG~~~--~A~~I~e~A~e~gVPi~e~ 46 (114)
T 3b0z_B 18 PKVVAKGAGL--IALRIREIGAEHRVPTLEA 46 (114)
Confidence 3555655544 6889999999999998754
No 271
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=22.22 E-value=1.6e+02 Score=22.80 Aligned_cols=33 Identities=9% Similarity=0.090 Sum_probs=23.6
Q ss_pred cccEEEEecC------CChhhHHHhHHHHhHhcCCCEEE
Q psy1295 59 LSEFIVLAAD------AEPLEIVLHLPLLCEDKNVPYVF 91 (137)
Q Consensus 59 kaklViiA~D------~~~~~~~~~i~~lc~~~~IP~i~ 91 (137)
+.++|++..= +-+.+..+.+..+|++++++++.
T Consensus 188 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 226 (428)
T 1iay_A 188 KVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVC 226 (428)
T ss_dssp CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred ceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEE
Confidence 6788887532 22334578899999999998874
No 272
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=22.21 E-value=1.4e+02 Score=22.26 Aligned_cols=39 Identities=5% Similarity=0.004 Sum_probs=21.1
Q ss_pred HHHHHcCcccEEEEe-cCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 52 TKTLNRGLSEFIVLA-ADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 52 ~kaI~k~kaklViiA-~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
.+.+..+++..+|+. .|.+. + ......+.+.+||++.+.
T Consensus 53 i~~li~~~vdgiii~~~~~~~--~-~~~~~~a~~~gipvV~~d 92 (316)
T 1tjy_A 53 VNNFVNQGYDAIIVSAVSPDG--L-CPALKRAMQRGVKILTWD 92 (316)
T ss_dssp HHHHHHTTCSEEEECCSSSST--T-HHHHHHHHHTTCEEEEES
T ss_pred HHHHHHcCCCEEEEeCCCHHH--H-HHHHHHHHHCcCEEEEec
Confidence 334444566666654 44331 1 233445677889887653
No 273
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=22.13 E-value=1.9e+02 Score=19.58 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=31.7
Q ss_pred HHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCH
Q psy1295 49 NEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSK 95 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk 95 (137)
.........|+.+.|+=+.|- . -...+...++..|+|+..+-|.
T Consensus 45 ~~~~~W~~~g~~Kvvlk~~~e--~-el~~l~~~a~~~gl~~~~i~DA 88 (121)
T 1wn2_A 45 EWFEAWFREGQKKVVVKVESE--E-ELFKLKAEAEKLGLPNALIRDA 88 (121)
T ss_dssp HHHHHHHHTTCCEEEEEESSH--H-HHHHHHHHHHHTTCCEEEEECT
T ss_pred HHHHHHHHCCCcEEEEecCCH--H-HHHHHHHHHHHCCCCEEEEEcC
Confidence 444555677889988888873 3 3557888889999998766443
No 274
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=21.81 E-value=1.2e+02 Score=19.09 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=20.2
Q ss_pred cCCChhhHHHhHHHHhHhcCCCEEEeC---CH---HHHHHHhCCC
Q psy1295 67 ADAEPLEIVLHLPLLCEDKNVPYVFVR---SK---QALGRACGVS 105 (137)
Q Consensus 67 ~D~~~~~~~~~i~~lc~~~~IP~i~~~---tk---~eLG~a~G~~ 105 (137)
..|++ . ..+..+.++++|+|..+. +. .+|-+..|..
T Consensus 30 ~~C~~--C-~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~ 71 (105)
T 2yan_A 30 AKCGF--S-KQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWP 71 (105)
T ss_dssp BCTTH--H-HHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCC
T ss_pred CCCcc--H-HHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCC
Confidence 56644 2 345556677789977653 21 2355556653
No 275
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=21.81 E-value=1.2e+02 Score=20.26 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=39.4
Q ss_pred cccEEEEecCCChhhHHHhHHHH------hHhcCCCEEEeCCHHHHHHHhCC----------CcceEEEEEEeCCCCChH
Q psy1295 59 LSEFIVLAADAEPLEIVLHLPLL------CEDKNVPYVFVRSKQALGRACGV----------SRPIIACSVTVDEGSQLK 122 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~~l------c~~~~IP~i~~~tk~eLG~a~G~----------~~~v~~~ai~~~~~s~~~ 122 (137)
.+..+++.-|++..+....+..+ ....++|++.+.+|.+|-..-.. ...+...-+-...+..+.
T Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 82 GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVE 161 (186)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence 45666666666543333333222 12368999999998887421111 112222222233456777
Q ss_pred HHHHHHHHHHH
Q psy1295 123 PQIQAIQQQIE 133 (137)
Q Consensus 123 ~~i~e~~~~~~ 133 (137)
++++.+...+.
T Consensus 162 ~l~~~l~~~~~ 172 (186)
T 2bme_A 162 EAFVQCARKIL 172 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 276
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=21.73 E-value=1.1e+02 Score=20.89 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=23.7
Q ss_pred cccEEEEecCCChhhHHHhHH----HHhHh--cCCCEEEeCCHHHHH
Q psy1295 59 LSEFIVLAADAEPLEIVLHLP----LLCED--KNVPYVFVRSKQALG 99 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~----~lc~~--~~IP~i~~~tk~eLG 99 (137)
.+..+++.-|++..+....+. ..... .++|++.+++|.+|-
T Consensus 91 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 91 NTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR 137 (201)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGG
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 355666666665433333332 11222 389999999888774
No 277
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=21.71 E-value=1.1e+02 Score=24.16 Aligned_cols=44 Identities=2% Similarity=-0.048 Sum_probs=28.8
Q ss_pred HHHHHHHHc--CcccEEEEecC-------CChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 49 NEATKTLNR--GLSEFIVLAAD-------AEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 49 ~~v~kaI~k--~kaklViiA~D-------~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
.++.+++++ ++.++|++-.. ..+.+..+.+..+|++||++++.-
T Consensus 189 ~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~D 241 (453)
T 2cy8_A 189 EGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILD 241 (453)
T ss_dssp HHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 344555653 35667766432 123456889999999999988753
No 278
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=21.69 E-value=1.3e+02 Score=17.37 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=8.7
Q ss_pred hHHHHhHhcCCCEEEe
Q psy1295 77 HLPLLCEDKNVPYVFV 92 (137)
Q Consensus 77 ~i~~lc~~~~IP~i~~ 92 (137)
.+..+.++++|++..+
T Consensus 16 ~~~~~l~~~~i~~~~~ 31 (82)
T 1fov_A 16 RAKALLSSKGVSFQEL 31 (82)
T ss_dssp HHHHHHHHHTCCCEEE
T ss_pred HHHHHHHHCCCCcEEE
Confidence 3444445567776544
No 279
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=21.67 E-value=2.2e+02 Score=24.39 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=48.8
Q ss_pred cCcccEEEEecCCChhh----------------------------------HHHhHHHHhHhcCCCEEEeCCH------H
Q psy1295 57 RGLSEFIVLAADAEPLE----------------------------------IVLHLPLLCEDKNVPYVFVRSK------Q 96 (137)
Q Consensus 57 k~kaklViiA~D~~~~~----------------------------------~~~~i~~lc~~~~IP~i~~~tk------~ 96 (137)
++..+++|++.|++++. ....+.....+++|..|+.-++ +
T Consensus 259 R~a~rllV~~TDA~fH~agDgkLaGIv~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~ennI~~IFAVt~~~~~~Y~ 338 (503)
T 3v4v_B 259 RNVSRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAANIQPIFAVTSAALPVYQ 338 (503)
T ss_dssp CSSEEEEEEEESSCBCCTTGGGTTTCCSCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHTEEEEEEECSSSHHHHH
T ss_pred CcceEEEEEECCCCcCcCCCccccceecCCCCCeEECCCCccccccccCCCCHHHHHHHHHhcCCeEEEEEcccchhHHH
Confidence 34679999999997641 1234455556677776665333 3
Q ss_pred HHHHHhCCCcceEEEEEEeCCCCChHHHHHHHHHHHH
Q psy1295 97 ALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIE 133 (137)
Q Consensus 97 eLG~a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~ 133 (137)
+|...+... .+...-.+.+.+.++|.+...+|.
T Consensus 339 ~L~~~ip~s----~vg~Ls~dSsNiv~LI~~aY~~i~ 371 (503)
T 3v4v_B 339 ELSKLIPKS----AVGELSEDSSNVVQLIMDAYNSLS 371 (503)
T ss_dssp HHHTTSTTC----EEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHhCCCc----eeeEccccchhHHHHHHHHHHHhh
Confidence 566666542 456777778899999998877764
No 280
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=21.60 E-value=66 Score=24.76 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=20.9
Q ss_pred ccEEEEecCCC-hh---hHHHhHHHHhHhcCCCEEEeCCHHHH
Q psy1295 60 SEFIVLAADAE-PL---EIVLHLPLLCEDKNVPYVFVRSKQAL 98 (137)
Q Consensus 60 aklViiA~D~~-~~---~~~~~i~~lc~~~~IP~i~~~tk~eL 98 (137)
+..+++.-|+. |. +....+...++..++|.+.+.+|.+|
T Consensus 80 aD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL 122 (302)
T 2yv5_A 80 VDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDL 122 (302)
T ss_dssp CCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGG
T ss_pred cCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccC
Confidence 44555555543 21 12334444556677777777776655
No 281
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=21.59 E-value=1.2e+02 Score=20.47 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=40.8
Q ss_pred cccEEEEecCCChh----hHHHhHHHHhHh---cCCCEEEeCCHHHHH---------HHhCC----CcceEEEEEEeCCC
Q psy1295 59 LSEFIVLAADAEPL----EIVLHLPLLCED---KNVPYVFVRSKQALG---------RACGV----SRPIIACSVTVDEG 118 (137)
Q Consensus 59 kaklViiA~D~~~~----~~~~~i~~lc~~---~~IP~i~~~tk~eLG---------~a~G~----~~~v~~~ai~~~~~ 118 (137)
.+..+++.-|++.. +....+..+.+. .++|++.+.+|.+|- ...+. ...+...-+-...+
T Consensus 89 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (189)
T 2x77_A 89 DTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTG 168 (189)
T ss_dssp TCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCc
Confidence 45556665555422 233334444333 589999888776553 33332 22232222323445
Q ss_pred CChHHHHHHHHHHHHH
Q psy1295 119 SQLKPQIQAIQQQIER 134 (137)
Q Consensus 119 s~~~~~i~e~~~~~~~ 134 (137)
..+.++++.+...+.+
T Consensus 169 ~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 169 DGLVEGMDWLVERLRE 184 (189)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 6788888888777653
No 282
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A*
Probab=21.58 E-value=1.1e+02 Score=26.15 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHcCcccEEEEecC-----------CChhhHHHhHHHHhHhcCCCEE
Q psy1295 45 RKGANEATKTLNRGLSEFIVLAAD-----------AEPLEIVLHLPLLCEDKNVPYV 90 (137)
Q Consensus 45 v~G~~~v~kaI~k~kaklViiA~D-----------~~~~~~~~~i~~lc~~~~IP~i 90 (137)
.-|...+.+.+++..+.+.|-+-+ |+|..+...+...|+.+||++.
T Consensus 322 rdGY~~Ia~m~~rh~~~l~fTC~EM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~a 378 (495)
T 1wdp_A 322 RDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVA 378 (495)
T ss_dssp BCSSHHHHHHHHTTTCEEEECCTTCCGGGSCGGGCCCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCchHHHHHHHHHcCCeEEEEecCCCcCCCCcccCCCHHHHHHHHHHHHHHhCCcee
Confidence 368899999999999999998754 6677899999999999999986
No 283
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=21.57 E-value=1.9e+02 Score=19.39 Aligned_cols=43 Identities=9% Similarity=0.180 Sum_probs=30.6
Q ss_pred HHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCC
Q psy1295 49 NEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRS 94 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~t 94 (137)
.........|+.+.|+=+.|- . -...+...++..|+|+..+-+
T Consensus 41 ~~~~~W~~~g~~kiVlk~~~e--~-~l~~l~~~a~~~gl~~~~v~D 83 (117)
T 1rlk_A 41 DVFNEWYDEGQRKIVVKVNDL--D-EIMEIKRMADSMGIVNEIVQD 83 (117)
T ss_dssp HHHHHHHHTTCCEEEEEESSH--H-HHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHCCCeEEEEecCCH--H-HHHHHHHHHHHCCCCEEEEEe
Confidence 444455667888888888773 2 356688888899999876643
No 284
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.50 E-value=1.7e+02 Score=18.79 Aligned_cols=16 Identities=13% Similarity=0.187 Sum_probs=11.8
Q ss_pred hHHHHhHhcCCCEEEe
Q psy1295 77 HLPLLCEDKNVPYVFV 92 (137)
Q Consensus 77 ~i~~lc~~~~IP~i~~ 92 (137)
....+.+.++|+|..+
T Consensus 29 ~ak~~L~~~gi~y~~v 44 (111)
T 2ct6_A 29 DVVRFLEANKIEFEEV 44 (111)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 5677777888887655
No 285
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=21.50 E-value=1.5e+02 Score=25.29 Aligned_cols=51 Identities=25% Similarity=0.238 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCCHHH---HHHHhC
Q psy1295 48 ANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRSKQA---LGRACG 103 (137)
Q Consensus 48 ~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~tk~e---LG~a~G 103 (137)
.++..+.|.+-.+.+||++.+.++. ... ++.++||-.+...++.+ |.+++|
T Consensus 284 l~~~v~~I~~~g~~vvi~~~~I~~~-al~----~L~~~gI~av~~v~~~~leria~~tG 337 (568)
T 3p9d_H 284 IDAMMKEIADMGVECIVAGAGVGEL-ALH----YLNRYGILVLKVPSKFELRRLCRVCG 337 (568)
T ss_dssp HHHHHHHHHHTTCCEEEECSCCCHH-HHH----HHHHHTCEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCeEEEECCCcChH-HHH----HHHHCCeEEEecCCHHHHHHHHHHhC
Confidence 3556667777778999999999885 333 33456787776655543 444444
No 286
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=21.50 E-value=1.7e+02 Score=20.98 Aligned_cols=46 Identities=9% Similarity=0.113 Sum_probs=29.0
Q ss_pred HHcCcccEEEEecCCChhhHHHhHHHHhHhc-------CCCEEEe-CCHHHHHHHhCCC
Q psy1295 55 LNRGLSEFIVLAADAEPLEIVLHLPLLCEDK-------NVPYVFV-RSKQALGRACGVS 105 (137)
Q Consensus 55 I~k~kaklViiA~D~~~~~~~~~i~~lc~~~-------~IP~i~~-~tk~eLG~a~G~~ 105 (137)
.++..+.+|.|..|. +. ....+++.+ ++++-.+ ....++.+..|..
T Consensus 82 ~~~~~v~vv~Is~D~-~~----~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~ 135 (213)
T 2i81_A 82 FHERNVELLGCSVDS-KY----THLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVL 135 (213)
T ss_dssp HHHTTEEEEEEESSC-HH----HHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCE
T ss_pred HHHCCCEEEEEeCCC-HH----HHHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCc
Confidence 344568888888883 32 234455555 6666544 3457888888875
No 287
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=21.48 E-value=1.4e+02 Score=20.94 Aligned_cols=75 Identities=12% Similarity=0.079 Sum_probs=35.7
Q ss_pred cccEEEEecCCChhhHHHhHH----HHhH--hcCCCEEEeCCHHHHHHH----------hCCCcceEEEEEEeCCCCChH
Q psy1295 59 LSEFIVLAADAEPLEIVLHLP----LLCE--DKNVPYVFVRSKQALGRA----------CGVSRPIIACSVTVDEGSQLK 122 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~----~lc~--~~~IP~i~~~tk~eLG~a----------~G~~~~v~~~ai~~~~~s~~~ 122 (137)
.+..+|+.-|++..+....+. .+-. ..++|++.+.+|.+|-.. +-....+...-+-...+..+.
T Consensus 85 ~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 85 GAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVD 164 (223)
T ss_dssp TCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 355666666665432333322 2211 247999999888776421 101112222222223345777
Q ss_pred HHHHHHHHHHH
Q psy1295 123 PQIQAIQQQIE 133 (137)
Q Consensus 123 ~~i~e~~~~~~ 133 (137)
++++.+...+.
T Consensus 165 ~l~~~l~~~i~ 175 (223)
T 3cpj_B 165 KAFEELINTIY 175 (223)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 77777766653
No 288
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=21.36 E-value=2.3e+02 Score=20.46 Aligned_cols=42 Identities=14% Similarity=0.066 Sum_probs=23.4
Q ss_pred HHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCC
Q psy1295 51 ATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRS 94 (137)
Q Consensus 51 v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~t 94 (137)
..+.+..+++.-+|+....... . ......+.+.+||++.+.+
T Consensus 51 ~~~~~~~~~vdgiii~~~~~~~-~-~~~~~~~~~~~iPvV~~~~ 92 (309)
T 2fvy_A 51 QIDVLLAKGVKALAINLVDPAA-A-GTVIEKARGQNVPVVFFNK 92 (309)
T ss_dssp HHHHHHHTTCSEEEECCSSGGG-H-HHHHHHHHTTTCCEEEESS
T ss_pred HHHHHHHcCCCEEEEeCCCcch-h-HHHHHHHHHCCCcEEEecC
Confidence 3445555667766665432221 2 2333445678999987653
No 289
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=21.35 E-value=92 Score=21.11 Aligned_cols=76 Identities=13% Similarity=0.035 Sum_probs=37.9
Q ss_pred cccEEEEecCCChhhHHHhHH----HHhHh--cCCCEEEeCCHHHHHHH----------hCCCcceEEEEEEeCCCCChH
Q psy1295 59 LSEFIVLAADAEPLEIVLHLP----LLCED--KNVPYVFVRSKQALGRA----------CGVSRPIIACSVTVDEGSQLK 122 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i~----~lc~~--~~IP~i~~~tk~eLG~a----------~G~~~~v~~~ai~~~~~s~~~ 122 (137)
.+..+++.-|++..+....+. .+.+. .++|++.+.+|.+|-.. +-...++...-+-...+..+.
T Consensus 94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 173 (189)
T 2gf9_A 94 GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVK 173 (189)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 345555655654332223222 22222 47999988877665321 100112222223234456788
Q ss_pred HHHHHHHHHHHH
Q psy1295 123 PQIQAIQQQIER 134 (137)
Q Consensus 123 ~~i~e~~~~~~~ 134 (137)
++++.+.+.+.+
T Consensus 174 ~l~~~l~~~i~~ 185 (189)
T 2gf9_A 174 QVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887776643
No 290
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=21.29 E-value=1.8e+02 Score=19.12 Aligned_cols=33 Identities=6% Similarity=0.025 Sum_probs=17.9
Q ss_pred HHHHHHcCcccEEEEec------CCChhhHHHhHHHHhHhcCCC
Q psy1295 51 ATKTLNRGLSEFIVLAA------DAEPLEIVLHLPLLCEDKNVP 88 (137)
Q Consensus 51 v~kaI~k~kaklViiA~------D~~~~~~~~~i~~lc~~~~IP 88 (137)
+.+.|.++ +++|... .|.. =.....+-++++||
T Consensus 9 v~~~i~~~--~Vvvfsk~t~~~p~Cp~---C~~ak~lL~~~gv~ 47 (121)
T 3gx8_A 9 IEDAIESA--PVVLFMKGTPEFPKCGF---SRATIGLLGNQGVD 47 (121)
T ss_dssp HHHHHHSC--SEEEEESBCSSSBCTTH---HHHHHHHHHHHTBC
T ss_pred HHHHhccC--CEEEEEeccCCCCCCcc---HHHHHHHHHHcCCC
Confidence 33444444 4555555 4532 34555666777888
No 291
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=21.22 E-value=1.5e+02 Score=21.85 Aligned_cols=43 Identities=2% Similarity=0.030 Sum_probs=23.3
Q ss_pred HHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeCC
Q psy1295 50 EATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVRS 94 (137)
Q Consensus 50 ~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~t 94 (137)
+..+.+..+++.-+|+...-... .......+.+.+||++.+.+
T Consensus 49 ~~i~~l~~~~vdgiIi~~~~~~~--~~~~~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 49 SQIENMINRGVDVLVIIPYNGQV--LSNVVKEAKQEGIKVLAYDR 91 (313)
T ss_dssp HHHHHHHHTTCSEEEEECSSTTS--CHHHHHHHHTTTCEEEEESS
T ss_pred HHHHHHHHcCCCEEEEeCCChhh--hHHHHHHHHHCCCeEEEECC
Confidence 34455555566655555432221 12344456778999887653
No 292
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=21.10 E-value=1.7e+02 Score=21.29 Aligned_cols=41 Identities=10% Similarity=0.021 Sum_probs=22.8
Q ss_pred HHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 51 ATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 51 v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
..+.+..+++.-+|+..-..+. . ......+.+.+||++.+.
T Consensus 53 ~i~~l~~~~vdgiii~~~~~~~-~-~~~~~~~~~~giPvV~~~ 93 (297)
T 3rot_A 53 FIESALATYPSGIATTIPSDTA-F-SKSLQRANKLNIPVIAVD 93 (297)
T ss_dssp HHHHHHHTCCSEEEECCCCSST-T-HHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHcCCCEEEEeCCCHHH-H-HHHHHHHHHCCCCEEEEc
Confidence 3444445556666654432221 2 334455677899998775
No 293
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=21.07 E-value=1.4e+02 Score=23.69 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=29.6
Q ss_pred HHHHHHHHcCcccEEEEecCC-------ChhhHHHhHHHHhHhcCCCEEEeC
Q psy1295 49 NEATKTLNRGLSEFIVLAADA-------EPLEIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~D~-------~~~~~~~~i~~lc~~~~IP~i~~~ 93 (137)
.++.++++..+.++|++-..- .+.+..+.+.++|+++|+.++.-.
T Consensus 202 ~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE 253 (433)
T 1z7d_A 202 EALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADE 253 (433)
T ss_dssp HHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 445555645567777764321 122367899999999999988543
No 294
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Probab=21.07 E-value=97 Score=24.27 Aligned_cols=64 Identities=19% Similarity=0.127 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 29 TKILSLVQQALNYKQLR------KGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 29 ~kl~~lL~~A~~ag~lv------~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
....+.+...++.|++. .+..++.++++......+++--..++..-...+..+|+++||.++-.
T Consensus 153 ~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~ 222 (331)
T 3h7r_A 153 TSTWKAMEALYDSGKARAIGVSNFSSKKLTDLLNVARVTPAVNQVECHPVWQQQGLHELCKSKGVHLSGY 222 (331)
T ss_dssp HHHHHHHHHHHHTTSBSSEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEecCCCHHHHHHHHHhcCCCceeEEeecccccCCHHHHHHHHHCCCEEEEe
Confidence 34566777778888863 35677788887776665555544554322357889999999998743
No 295
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Probab=21.05 E-value=96 Score=24.28 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCcc------ccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 29 TKILSLVQQALNYKQLR------KGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 29 ~kl~~lL~~A~~ag~lv------~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
....+.+...++.|++. .+..++.++++....+.+++--..++..-...+..+|+++||.++-.
T Consensus 157 ~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~ 226 (335)
T 3h7u_A 157 PSTWKAMEALYDSGKARAIGVSNFSTKKLADLLELARVPPAVNQVECHPSWRQTKLQEFCKSKGVHLSAY 226 (335)
T ss_dssp HHHHHHHHHHHHTTSBSSEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCeEEEecccccccCCHHHHHHHHHCCCEEEEe
Confidence 34566777778888863 35667777777776665555544544322356889999999998743
No 296
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=21.00 E-value=2e+02 Score=19.71 Aligned_cols=47 Identities=6% Similarity=0.079 Sum_probs=32.0
Q ss_pred HHHcCcc-cEEEEecCCChhhHHHhHHHHhHhcCCC--EEEe-CCHHHHHHHhCCC
Q psy1295 54 TLNRGLS-EFIVLAADAEPLEIVLHLPLLCEDKNVP--YVFV-RSKQALGRACGVS 105 (137)
Q Consensus 54 aI~k~ka-klViiA~D~~~~~~~~~i~~lc~~~~IP--~i~~-~tk~eLG~a~G~~ 105 (137)
..++..+ .++-|+.|. + .....+++++++| +-.+ ....+++++.|..
T Consensus 61 ~~~~~gv~~vv~Is~d~-~----~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~ 111 (167)
T 2wfc_A 61 AIHGKGVDIIACMAVND-S----FVMDAWGKAHGADDKVQMLADPGGAFTKAVDME 111 (167)
T ss_dssp HHHHTTCCEEEEEESSC-H----HHHHHHHHHTTCTTTSEEEECTTSHHHHHTTCE
T ss_pred HHHHCCCCEEEEEeCCC-H----HHHHHHHHhcCCCcceEEEECCCCcHHHHcCCc
Confidence 3444567 888888873 3 2355678888887 6554 4457888888864
No 297
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=20.99 E-value=2.5e+02 Score=20.64 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=29.7
Q ss_pred HHhHHHHhHhcCCCEE-EeCCHHHHHHHhCCCcceEEEEEEeCCCCChHHHHHHHHHHHH
Q psy1295 75 VLHLPLLCEDKNVPYV-FVRSKQALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIE 133 (137)
Q Consensus 75 ~~~i~~lc~~~~IP~i-~~~tk~eLG~a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~ 133 (137)
...+..+++..++|+. .++....+.++......+ ......+.....++++.+++.
T Consensus 193 ~~~~~~l~~~~g~~~l~~Ip~~~~~~~a~~~g~~v----~~~~~~s~~~~~~~~la~~l~ 248 (289)
T 2afh_E 193 DELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTV----IEYDPKAKQADEYRALARKVV 248 (289)
T ss_dssp HHHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCH----HHHCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccccccCCCchhHHHHHHcCCCc----eeeCCCCHHHHHHHHHHHHHH
Confidence 3445556666677765 356666776665433322 112334555666666666553
No 298
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=20.94 E-value=1.3e+02 Score=20.62 Aligned_cols=49 Identities=8% Similarity=0.047 Sum_probs=29.7
Q ss_pred ccccHHHHHHHHHc-------CcccEEEEecCCChhhH--HHhHHHHhHhcCCCEEEe
Q psy1295 44 LRKGANEATKTLNR-------GLSEFIVLAADAEPLEI--VLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 44 lv~G~~~v~kaI~k-------~kaklViiA~D~~~~~~--~~~i~~lc~~~~IP~i~~ 92 (137)
+..|...+.+.+.. +..+.+|+-.|..+.+- .......++..+|+++.+
T Consensus 100 ~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~~~~~~~~~~l~~~gi~v~~i 157 (178)
T 2xgg_A 100 TSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSDFRTVRAAKEIRELGGIVTVL 157 (178)
T ss_dssp HHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHHHHHSHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEE
Confidence 55666666665522 34688999999877532 333444555666665544
No 299
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=20.87 E-value=55 Score=22.88 Aligned_cols=68 Identities=15% Similarity=0.044 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHcCC--------------ccccHHHHHHHHHcCcccEEEEecCCCh--hhHHHhHHHHhHhcCCCE
Q psy1295 26 ALTTKILSLVQQALNYKQ--------------LRKGANEATKTLNRGLSEFIVLAADAEP--LEIVLHLPLLCEDKNVPY 89 (137)
Q Consensus 26 ~~~~kl~~lL~~A~~ag~--------------lv~G~~~v~kaI~k~kaklViiA~D~~~--~~~~~~i~~lc~~~~IP~ 89 (137)
.+...+..+-..|...|. =--|....++.+++|++..|++.+ .+. ++....+..+|..+||.+
T Consensus 19 sl~~Q~~~l~~~~~~~g~~v~~~~D~~SG~~~~Rp~l~~ll~~~~~g~id~vvv~~-ldRL~R~~~~~l~~~l~~~gv~~ 97 (154)
T 3lhk_A 19 DLERQIQLIKSYAEENGWDIQILKDIGSGLNEKRKNYKKLLKMVMNRKVEKVIIAY-PDRLTRFGFETLKEFFKSYGTEI 97 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEESCTTCTTCHHHHHHHHHHHTTCEEEEEESS-HHHHCSSCHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEeccCCcCCCCHHHHHHHHHHHcCCCCEEEEEe-CCcccccHHHHHHHHHHHCCCEE
Confidence 566666666666655432 123678888888999888777642 211 012233457789999998
Q ss_pred EEeCC
Q psy1295 90 VFVRS 94 (137)
Q Consensus 90 i~~~t 94 (137)
+.+..
T Consensus 98 ~~~~~ 102 (154)
T 3lhk_A 98 VIINK 102 (154)
T ss_dssp EESCS
T ss_pred EEEeC
Confidence 87653
No 300
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=20.85 E-value=1.7e+02 Score=21.71 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=24.9
Q ss_pred cccEEEEecCCChhhHHHhH----HHHhHhc--CCCEEEeCCHHHHH
Q psy1295 59 LSEFIVLAADAEPLEIVLHL----PLLCEDK--NVPYVFVRSKQALG 99 (137)
Q Consensus 59 kaklViiA~D~~~~~~~~~i----~~lc~~~--~IP~i~~~tk~eLG 99 (137)
.+..+++.-|++..+....+ ......+ ++|++.+++|.+|-
T Consensus 226 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLR 272 (332)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHH
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcc
Confidence 45666777676543232222 2222333 89999999998884
No 301
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1
Probab=20.77 E-value=1.1e+02 Score=26.30 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=40.1
Q ss_pred cccHHHHHHHHHcCcccEEEEecC-----------CChhhHHHhHHHHhHhcCCCEE
Q psy1295 45 RKGANEATKTLNRGLSEFIVLAAD-----------AEPLEIVLHLPLLCEDKNVPYV 90 (137)
Q Consensus 45 v~G~~~v~kaI~k~kaklViiA~D-----------~~~~~~~~~i~~lc~~~~IP~i 90 (137)
.-|...+.+.+++..+.+.|-+-+ |+|..+...+...|+.+||++.
T Consensus 324 rdGY~~Ia~mf~rh~~~l~fTC~EM~d~eqp~~~~s~Pe~Lv~QV~~aa~~~Gv~~a 380 (498)
T 1fa2_A 324 RDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQELVQQVLSSGWKEYIDVA 380 (498)
T ss_dssp BCSSHHHHHHHHHTTCEEEESCCSCCGGGSCGGGTCCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCchHHHHHHHHHcCCeEEEEecCCCcCCCCcccCCCHHHHHHHHHHHHHHhCCcee
Confidence 358899999999999999997654 6777899999999999999986
No 302
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=20.72 E-value=30 Score=27.97 Aligned_cols=12 Identities=42% Similarity=0.495 Sum_probs=0.0
Q ss_pred cccccccCCCCC
Q psy1295 3 TFLYFQTNEEPA 14 (137)
Q Consensus 3 ~~~~~~~~~~~~ 14 (137)
.|||||.+.|..
T Consensus 16 ~~~~~~~~~m~~ 27 (429)
T 1z05_A 16 ENLYFQSNAMYM 27 (429)
T ss_dssp ------------
T ss_pred cceeeehhhhhc
Confidence 479999999984
No 303
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=20.68 E-value=1.6e+02 Score=20.06 Aligned_cols=47 Identities=11% Similarity=0.280 Sum_probs=29.7
Q ss_pred cccEEEEecCCCh---hhHHHhHHHHhHhcCCCEEEe-CCHHHHHHHhCCC
Q psy1295 59 LSEFIVLAADAEP---LEIVLHLPLLCEDKNVPYVFV-RSKQALGRACGVS 105 (137)
Q Consensus 59 kaklViiA~D~~~---~~~~~~i~~lc~~~~IP~i~~-~tk~eLG~a~G~~ 105 (137)
.+.++.+..|-.. .+....+..+++++++++-.. ....++.+..|..
T Consensus 79 ~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 129 (196)
T 2ywi_A 79 GVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYDAA 129 (196)
T ss_dssp TCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHTCC
T ss_pred CcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhCCC
Confidence 4666777665321 124556777788888876544 3456788888865
No 304
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=20.65 E-value=62 Score=20.99 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=38.0
Q ss_pred ccEEEEecCCCh--hhHHHhHHHHhHhcCCCEEEeCCHHHHHHH-------h--CCCcceEEEEEEeCCCCChHHHHHHH
Q psy1295 60 SEFIVLAADAEP--LEIVLHLPLLCEDKNVPYVFVRSKQALGRA-------C--GVSRPIIACSVTVDEGSQLKPQIQAI 128 (137)
Q Consensus 60 aklViiA~D~~~--~~~~~~i~~lc~~~~IP~i~~~tk~eLG~a-------~--G~~~~v~~~ai~~~~~s~~~~~i~e~ 128 (137)
+..+++.-|++. ......+..+.+..++|++.+.+|.+|-.. . |.. .. .-+-...+..+.++++.+
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~--~~~Sa~~~~gv~~l~~~l 156 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELYLGPLYGLGFG-DP--IPTSSEHARGLEELLEAI 156 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGGGCGGGGGGSSC-SC--EECBTTTTBSHHHHHHHH
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchHhHHHHHhCCCC-Ce--EEEecccCCChHHHHHHH
Confidence 444554444432 224456667777789999999888665432 1 211 11 112223456777777776
Q ss_pred HHH
Q psy1295 129 QQQ 131 (137)
Q Consensus 129 ~~~ 131 (137)
.+.
T Consensus 157 ~~~ 159 (161)
T 2dyk_A 157 WER 159 (161)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 305
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=20.62 E-value=77 Score=24.77 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=27.5
Q ss_pred HHHHHHHHc---CcccEEEEecC-------CChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 49 NEATKTLNR---GLSEFIVLAAD-------AEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 49 ~~v~kaI~k---~kaklViiA~D-------~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
..+.+++++ ++.++|++-.. ..+.+..+.+.++|+++++.++.-
T Consensus 190 ~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D 243 (433)
T 1zod_A 190 DYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILD 243 (433)
T ss_dssp HHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Confidence 344445543 45666666332 122345888999999999988754
No 306
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=20.61 E-value=1.5e+02 Score=17.78 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=9.0
Q ss_pred hHHHHhHhcCCCEEEe
Q psy1295 77 HLPLLCEDKNVPYVFV 92 (137)
Q Consensus 77 ~i~~lc~~~~IP~i~~ 92 (137)
....+.++++|||..+
T Consensus 19 ~ak~~L~~~gi~y~~i 34 (87)
T 1aba_A 19 NAKRLLTVKKQPFEFI 34 (87)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 4445556666766543
No 307
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=20.59 E-value=1.5e+02 Score=17.71 Aligned_cols=29 Identities=14% Similarity=0.167 Sum_probs=14.4
Q ss_pred EEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 62 FIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 62 lViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
+++...+..|. . ..+..+.++++|+|..+
T Consensus 8 v~ly~~~~C~~-C-~~~~~~L~~~~i~~~~~ 36 (92)
T 2khp_A 8 VIIYTRPGCPY-C-ARAKALLARKGAEFNEI 36 (92)
T ss_dssp EEEEECTTCHH-H-HHHHHHHHHTTCCCEEE
T ss_pred EEEEECCCChh-H-HHHHHHHHHcCCCcEEE
Confidence 44444443343 2 34455556667776654
No 308
>3krb_A Aldose reductase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, oxidoreductase, S genomics; HET: NAP; 1.75A {Giardia lamblia}
Probab=20.47 E-value=1e+02 Score=24.07 Aligned_cols=63 Identities=11% Similarity=0.038 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCcc------ccHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 30 KILSLVQQALNYKQLR------KGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 30 kl~~lL~~A~~ag~lv------~G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
...+.+...++.|++. ....++.+++...+.+.++.--..++......+..+|+++||.++-.
T Consensus 156 e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~c~~~gI~v~ay 224 (334)
T 3krb_A 156 DTWRAMEQLVEEGLVKHIGVSNYTVPLLADLLNYAKIKPLVNQIEIHPWHPNDATVKFCLDNGIGVTAY 224 (334)
T ss_dssp HHHHHHHHHHHHTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHcCCccEEEEecCCHHHHHHHHHhCCCceEEeeeecCcccccHHHHHHHHHcCCEEEEE
Confidence 4556667778888753 25677778887776655555444444323367889999999998743
No 309
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=20.37 E-value=1.1e+02 Score=20.64 Aligned_cols=43 Identities=16% Similarity=0.331 Sum_probs=29.4
Q ss_pred CcccEEEEecCCChhhHHHhHHHHhHhcCC-CEEEeCC--HHHHHHHhCCC
Q psy1295 58 GLSEFIVLAADAEPLEIVLHLPLLCEDKNV-PYVFVRS--KQALGRACGVS 105 (137)
Q Consensus 58 ~kaklViiA~D~~~~~~~~~i~~lc~~~~I-P~i~~~t--k~eLG~a~G~~ 105 (137)
..+.+|.|+.|. + ..+..+++++++ ++-...+ ..+++++.|..
T Consensus 76 ~~~~vv~is~d~-~----~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~ 121 (166)
T 3p7x_A 76 EEGIVLTISADL-P----FAQKRWCASAGLDNVITLSDHRDLSFGENYGVV 121 (166)
T ss_dssp TTSEEEEEESSC-H----HHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCE
T ss_pred CCCEEEEEECCC-H----HHHHHHHHHcCCCceEEccCCchhHHHHHhCCc
Confidence 457788888774 2 234567788888 6665533 46889988875
No 310
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=20.33 E-value=1.8e+02 Score=21.11 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=28.3
Q ss_pred HhHHHHhHhcCCCEE-EeCCHHHHHHHhCCCcceEEEEEEeCCCCChHHHHHHHHHHHH
Q psy1295 76 LHLPLLCEDKNVPYV-FVRSKQALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIE 133 (137)
Q Consensus 76 ~~i~~lc~~~~IP~i-~~~tk~eLG~a~G~~~~v~~~ai~~~~~s~~~~~i~e~~~~~~ 133 (137)
..+..+++..++|+. .++....+.++......+. .....+.....++++.+++.
T Consensus 191 ~~~~~l~~~~~~~v~~~Ip~~~~~~~a~~~g~~v~----~~~~~s~~~~~~~~l~~~l~ 245 (269)
T 1cp2_A 191 ELLDAFAKELGSQLIHFVPRSPMVTKAEINKQTVI----EYDPTCEQAEEYRELARKVD 245 (269)
T ss_dssp HHHHHHHHHHTCCEEEEECCCHHHHHHHHTTSCHH----HHCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccccCCCCcHHHHHHHcCCceE----EECCCChHHHHHHHHHHHHH
Confidence 334455566666655 3455566666654433221 12334555666666666654
No 311
>2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum}
Probab=20.33 E-value=62 Score=27.15 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.0
Q ss_pred CCChhhHHHhHHHHhHhcCCCEEE
Q psy1295 68 DAEPLEIVLHLPLLCEDKNVPYVF 91 (137)
Q Consensus 68 D~~~~~~~~~i~~lc~~~~IP~i~ 91 (137)
|+++. +...+..+|++++|||-.
T Consensus 379 ~~~~~-~~~~l~~ia~~~~Ip~Q~ 401 (461)
T 2glj_A 379 DANPE-YIAELRRILSKESVNWQT 401 (461)
T ss_dssp CCCHH-HHHHHHHHHHHTCCCEEE
T ss_pred cCCHH-HHHHHHHHHHHcCCCeEE
Confidence 35675 899999999999999987
No 312
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=20.19 E-value=99 Score=23.31 Aligned_cols=45 Identities=9% Similarity=0.021 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCcccEEEEecCCCh------hhHHHhHHHHhHhc--CCCEEEe
Q psy1295 48 ANEATKTLNRGLSEFIVLAADAEP------LEIVLHLPLLCEDK--NVPYVFV 92 (137)
Q Consensus 48 ~~~v~kaI~k~kaklViiA~D~~~------~~~~~~i~~lc~~~--~IP~i~~ 92 (137)
..++.+++...+.++|++..=-+| .+-...+..+|+++ |+.++.-
T Consensus 146 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~D 198 (367)
T 3euc_A 146 RGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVD 198 (367)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEE
T ss_pred HHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEe
Confidence 355566666556788888532222 12467788889999 8887753
No 313
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=20.16 E-value=2.7e+02 Score=20.64 Aligned_cols=39 Identities=8% Similarity=0.140 Sum_probs=25.0
Q ss_pred HHHHHHHcC-cccEEEEecCCChhhHHHhHHHHhHhcCCCEEEe
Q psy1295 50 EATKTLNRG-LSEFIVLAADAEPLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 50 ~v~kaI~k~-kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
.++++++.| .+.++.+-+|-+.. . -..+|+++|||+..+
T Consensus 21 all~~~~~~~~~eI~~Vis~~~~a-~---~~~~A~~~gIp~~~~ 60 (215)
T 3tqr_A 21 AIIGAIQKGLAIEIRAVISNRADA-Y---GLKRAQQADIPTHII 60 (215)
T ss_dssp HHHHHHHTTCSEEEEEEEESCTTC-H---HHHHHHHTTCCEEEC
T ss_pred HHHHHHHcCCCCEEEEEEeCCcch-H---HHHHHHHcCCCEEEe
Confidence 345555555 45677777664322 1 247899999999875
No 314
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=20.16 E-value=1.1e+02 Score=23.18 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEE-EeCCHHHHHHHhCC
Q psy1295 48 ANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYV-FVRSKQALGRACGV 104 (137)
Q Consensus 48 ~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i-~~~tk~eLG~a~G~ 104 (137)
..++..+++.| +++++.. .. ...+...|+++++|++ =+.|-.|+-++...
T Consensus 96 ~~~a~~Ai~AG-A~fIvsP-~~-----~~~vi~~~~~~gi~~ipGv~TptEi~~A~~~ 146 (232)
T 4e38_A 96 GEQALAAKEAG-ATFVVSP-GF-----NPNTVRACQEIGIDIVPGVNNPSTVEAALEM 146 (232)
T ss_dssp HHHHHHHHHHT-CSEEECS-SC-----CHHHHHHHHHHTCEEECEECSHHHHHHHHHT
T ss_pred HHHHHHHHHcC-CCEEEeC-CC-----CHHHHHHHHHcCCCEEcCCCCHHHHHHHHHc
Confidence 57777777777 6777643 23 3445677999999986 46788888776543
No 315
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=20.15 E-value=1.8e+02 Score=18.64 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=30.6
Q ss_pred hHHHHhHhcCCCEEEeCCHHHHHHH----------hCCCc-ceEEEEEEeCCCCChHHHHHHHHHHHH
Q psy1295 77 HLPLLCEDKNVPYVFVRSKQALGRA----------CGVSR-PIIACSVTVDEGSQLKPQIQAIQQQIE 133 (137)
Q Consensus 77 ~i~~lc~~~~IP~i~~~tk~eLG~a----------~G~~~-~v~~~ai~~~~~s~~~~~i~e~~~~~~ 133 (137)
.+...+...++|++.+.+|.+|-.. .-... .....-+-...+..+.++++.+.+++.
T Consensus 99 ~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 99 QILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred HHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 3444444568999998887665321 00011 222222223345678788887777653
No 316
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=20.14 E-value=1.2e+02 Score=20.85 Aligned_cols=48 Identities=13% Similarity=0.260 Sum_probs=27.4
Q ss_pred cCCCEEEeCCHHHHH---------HHhCCC----cceEEEEEEeCCCCChHHHHHHHHHHH
Q psy1295 85 KNVPYVFVRSKQALG---------RACGVS----RPIIACSVTVDEGSQLKPQIQAIQQQI 132 (137)
Q Consensus 85 ~~IP~i~~~tk~eLG---------~a~G~~----~~v~~~ai~~~~~s~~~~~i~e~~~~~ 132 (137)
.++|++.+.+|.+|- ...|.. ......-+-...+..+.++++.+..++
T Consensus 129 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 129 RDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred CCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 489999988776653 233322 222222232334567777777776655
No 317
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=20.14 E-value=71 Score=24.42 Aligned_cols=45 Identities=16% Similarity=0.043 Sum_probs=28.1
Q ss_pred HHHHHHHHcCcccEEEEecCCChh-hHHHhHHHHhHhcCCCEEEeC
Q psy1295 49 NEATKTLNRGLSEFIVLAADAEPL-EIVLHLPLLCEDKNVPYVFVR 93 (137)
Q Consensus 49 ~~v~kaI~k~kaklViiA~D~~~~-~~~~~i~~lc~~~~IP~i~~~ 93 (137)
.++.+++++.+.++|++..-..|. .-.+.+.++|++++++++.-.
T Consensus 153 ~~l~~~l~~~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~De 198 (407)
T 2dkj_A 153 EEVRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDM 198 (407)
T ss_dssp HHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHhhcCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEEEc
Confidence 455556654467888883222221 125788899999999877543
No 318
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=20.11 E-value=1.5e+02 Score=23.04 Aligned_cols=44 Identities=9% Similarity=0.037 Sum_probs=28.8
Q ss_pred HHHHHHHHcC--cccEEEEecCCC-------hhhHHHhHHHHhHhcCCCEEEe
Q psy1295 49 NEATKTLNRG--LSEFIVLAADAE-------PLEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 49 ~~v~kaI~k~--kaklViiA~D~~-------~~~~~~~i~~lc~~~~IP~i~~ 92 (137)
.++.++++.+ +..+|++-..-+ +.+..+.+..+|+++++.++.-
T Consensus 187 ~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D 239 (427)
T 3fq8_A 187 EAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFD 239 (427)
T ss_dssp HHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 3455566553 566666655322 2235889999999999998853
No 319
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=20.09 E-value=2.7e+02 Score=21.28 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=40.7
Q ss_pred cHHHHHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEE-EeCCHHHHHHHh
Q psy1295 47 GANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYV-FVRSKQALGRAC 102 (137)
Q Consensus 47 G~~~v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i-~~~tk~eLG~a~ 102 (137)
-..++..+..-|--.++++..|.++. ....+...|++.|+... .+.|.+++-++.
T Consensus 124 d~~qv~~A~~~GAD~VlLi~a~l~~~-~l~~l~~~a~~lGl~~lvev~t~ee~~~A~ 179 (272)
T 3qja_A 124 QPYQIHEARAHGADMLLLIVAALEQS-VLVSMLDRTESLGMTALVEVHTEQEADRAL 179 (272)
T ss_dssp SHHHHHHHHHTTCSEEEEEGGGSCHH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHH-HHHHHHHHHHHCCCcEEEEcCCHHHHHHHH
Confidence 34467777777755555568888886 57788899999998754 567888887764
No 320
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=20.07 E-value=1.5e+02 Score=24.94 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=27.7
Q ss_pred HHHHHHcCcccEEEEecCCChhhHHHhHHHHhHhcCCCEE
Q psy1295 51 ATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVPYV 90 (137)
Q Consensus 51 v~kaI~k~kaklViiA~D~~~~~~~~~i~~lc~~~~IP~i 90 (137)
+.+++++| ++.|++++..+.. ....+...|+++|+.++
T Consensus 53 v~e~~~~G-v~~viis~Gf~~~-~~~~l~~~A~~~g~rli 90 (480)
T 3dmy_A 53 ANQALDRN-LNVMMFSDNVTLE-DEIQLKTRAREKGLLVM 90 (480)
T ss_dssp HHHHHHTT-CEEEECCCCCCHH-HHHHHHHHHHHTTCCEE
T ss_pred HHHHHhcC-CCEEEECCCCCHH-HHHHHHHHHHHcCCEEE
Confidence 44455666 5677787777654 77889999999998765
No 321
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=20.01 E-value=1.6e+02 Score=17.82 Aligned_cols=64 Identities=23% Similarity=0.252 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHcCC---ccccHHHHHHHHHcCcccEEEEecCCC-h---hhHHHhHHHHhHhcCCCEEEe
Q psy1295 26 ALTTKILSLVQQALNYKQ---LRKGANEATKTLNRGLSEFIVLAADAE-P---LEIVLHLPLLCEDKNVPYVFV 92 (137)
Q Consensus 26 ~~~~kl~~lL~~A~~ag~---lv~G~~~v~kaI~k~kaklViiA~D~~-~---~~~~~~i~~lc~~~~IP~i~~ 92 (137)
...+.+...|.. .|. ......+..+.++++...+|++--+.+ . .++...+.......++|++.+
T Consensus 16 ~~~~~l~~~L~~---~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 16 ALSATLRSALEG---RGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHHH---HTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHHHHh---cCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE
Confidence 444555666654 232 334567788888888899999876554 2 223444433322468998877
Done!