RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1295
(137 letters)
>d2alea1 d.79.3.1 (A:1-126) Small nuclear
ribonucleoprotein-associated protein 1, Snu13p
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 126
Score = 149 bits (377), Expect = 3e-48
Identities = 88/124 (70%), Positives = 107/124 (86%)
Query: 14 AVNPKAYPLADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLE 73
A NPKA+PLAD ALT +IL +VQQA N +QL+KGANEATKTLNRG+SEFI++AAD EP+E
Sbjct: 3 APNPKAFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIE 62
Query: 74 IVLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIE 133
I+LHLPLLCEDKNVPYVFV S+ ALGRACGVSRP+IA S+T ++ S +K QI A++ +IE
Sbjct: 63 ILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKTQIYAVKDKIE 122
Query: 134 RLLI 137
LLI
Sbjct: 123 TLLI 126
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 142 bits (360), Expect = 1e-45
Identities = 106/123 (86%), Positives = 115/123 (93%)
Query: 15 VNPKAYPLADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEI 74
VNPKAYPLAD LT K+L LVQQ+ NYKQLRKGANEATKTLNRG+SEFIV+AADAEPLEI
Sbjct: 3 VNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEI 62
Query: 75 VLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIER 134
+LHLPLLCEDKNVPYVFVRSKQALGRACGVSRP+IACSVT+ EGSQLK QIQ+IQQ IER
Sbjct: 63 ILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIER 122
Query: 135 LLI 137
LL+
Sbjct: 123 LLV 125
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium
parvum [TaxId: 5807]}
Length = 115
Score = 126 bits (318), Expect = 2e-39
Identities = 80/115 (69%), Positives = 96/115 (83%)
Query: 20 YPLADTALTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLP 79
+PLA L KI++LVQQA NYKQLRKGANEATK LNRG++E ++LAADAEPLEI+LHLP
Sbjct: 1 FPLASPDLNNKIINLVQQACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLP 60
Query: 80 LLCEDKNVPYVFVRSKQALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIER 134
L+CEDKN PYVFVRSK ALGRACGVSRP+IA ++T +GS L QI ++ QIE+
Sbjct: 61 LVCEDKNTPYVFVRSKVALGRACGVSRPVIAAAITSKDGSSLSSQITELKDQIEQ 115
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 113
Score = 108 bits (271), Expect = 3e-32
Identities = 42/109 (38%), Positives = 74/109 (67%), Gaps = 2/109 (1%)
Query: 27 LTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKN 86
+ + LSL+++ +++KG NE TK + RGL++ + +A D +P EIV HLPLLCE+KN
Sbjct: 5 MQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKN 64
Query: 87 VPYVFVRSKQALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIERL 135
VPY++V+SK LGRA G+ P + ++ + +L+ ++ ++ ++I+ L
Sbjct: 65 VPYIYVKSKNDLGRAVGIEVPCASAAIINE--GELRKELGSLVEKIKGL 111
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix
[TaxId: 56636]}
Length = 124
Score = 105 bits (264), Expect = 5e-31
Identities = 43/109 (39%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 27 LTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKN 86
L K V++A +++KG NE TK + RGL++ +V+A D +P EIV+HLPLLC++K
Sbjct: 12 LAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKK 71
Query: 87 VPYVFVRSKQALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIERL 135
+PYV+V SK+ LG A G+ A SV + E + ++ I ++++ L
Sbjct: 72 IPYVYVPSKKRLGEAAGIEVA--AASVAIIEPGDAETLVREIVEKVKEL 118
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 119
Score = 103 bits (259), Expect = 2e-30
Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 27 LTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKN 86
L L ++ A + ++KG NE TK++ RG +E + +A D +P EIV+H+P L ++K
Sbjct: 12 LEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKG 71
Query: 87 VPYVFVRSKQALGRACGVSRPIIACSVTVDEGSQLKPQIQAIQQQIERL 135
VP++FV + LG A G+ A +VT + + ++ I ++E L
Sbjct: 72 VPFIFVEQQDDLGHAAGLEVGSAAAAVT--DAGEADADVEDIADKVEEL 118
>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 115
Score = 91.8 bits (228), Expect = 9e-26
Identities = 37/105 (35%), Positives = 67/105 (63%), Gaps = 4/105 (3%)
Query: 27 LTTKILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKN 86
+ ++L V +A ++++KGANE TK + RG+++ +++A D +P E+V HLP LCE+K
Sbjct: 12 IQKELLDAVAKA---QKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKG 68
Query: 87 VPYVFVRSKQALGRACGVSRPIIACSVTVDEGS-QLKPQIQAIQQ 130
+PY +V SKQ LG+A G+ + ++ + + +LK I+ +
Sbjct: 69 IPYAYVASKQDLGKAAGLEVAASSVAIINEGDAEELKVLIEKVNV 113
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e)
{Archaeon Thermococcus celer [TaxId: 2264]}
Length = 98
Score = 75.2 bits (185), Expect = 2e-19
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 35 VQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVP-YVFVR 93
+++A + ++ GA ++ + G ++ I++A +A P +I + + Y F
Sbjct: 7 LRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARP-DIKEDIEYYARLSGIAVYEFEG 65
Query: 94 SKQALGRACGVSRPIIACSVTVDEG 118
+ LG G + A +V D G
Sbjct: 66 TSVELGTLLGRPHTVSALAVV-DPG 89
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 97
Score = 74.8 bits (184), Expect = 2e-19
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 31 ILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVP-Y 89
I + + + G K+L +G S+ I++AA+ L Y
Sbjct: 2 INQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPV-LRKSELEYYAMLSKTKVY 60
Query: 90 VFVRSKQALGRACGVSRPIIACSVTVDEG 118
F LG A G + S+ + G
Sbjct: 61 YFQGGNNELGTAVGKLFRVGVVSIL-EAG 88
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e)
{Archaeon Thermococcus celer [TaxId: 2264]}
Length = 100
Score = 69.0 bits (169), Expect = 5e-17
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 31 ILSLVQQALNYKQLRKGANEATKTLNRGLSEFIVLAADAEPLEIVLHLPLLCEDKNVP-Y 89
I +++ ++ + G + ++L G S+ I++A + P + L P Y
Sbjct: 3 IAFELRKVIDSGKYTLGYRKTVQSLKMGGSKLIIIARNTRP-DRKEDLEYYARLSGTPVY 61
Query: 90 VFVRSKQALGRACGVSRPIIACSVTVDEG 118
F + LG A G + S+ D G
Sbjct: 62 EFEGTNVELGTAVGKPHTVSVVSIL-DAG 89
>d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate
decarboxylase {Plasmodium berghei [TaxId: 5821]}
Length = 324
Score = 25.3 bits (54), Expect = 2.5
Identities = 8/30 (26%), Positives = 9/30 (30%)
Query: 104 VSRPIIACSVTVDEGSQLKPQIQAIQQQIE 133
V R I QI I + IE
Sbjct: 294 VGRAITKSPNPKKSSESYYNQIIQIFKDIE 323
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.372
Gapped
Lambda K H
0.267 0.0596 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 434,669
Number of extensions: 17229
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 13
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.6 bits)