Query psy12951
Match_columns 111
No_of_seqs 106 out of 1026
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 23:53:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0234 GroS Co-chaperonin Gro 100.0 9.4E-41 2E-45 226.8 10.1 96 14-109 1-96 (96)
2 PRK00364 groES co-chaperonin G 100.0 1.1E-38 2.4E-43 216.7 11.1 95 14-108 1-95 (95)
3 PTZ00414 10 kDa heat shock pro 100.0 1E-37 2.2E-42 214.1 10.5 93 11-108 7-99 (100)
4 cd00320 cpn10 Chaperonin 10 Kd 100.0 2.5E-37 5.4E-42 209.3 10.2 93 15-107 1-93 (93)
5 PRK14533 groES co-chaperonin G 100.0 7E-37 1.5E-41 206.9 10.3 91 14-109 1-91 (91)
6 PF00166 Cpn10: Chaperonin 10 100.0 2.5E-35 5.3E-40 199.0 11.3 93 15-107 1-93 (93)
7 KOG1641|consensus 100.0 3.9E-33 8.4E-38 191.1 6.6 97 11-107 6-103 (104)
8 KOG1197|consensus 92.0 0.13 2.8E-06 41.6 2.6 41 35-84 55-99 (336)
9 PF08240 ADH_N: Alcohol dehydr 90.3 0.17 3.7E-06 33.6 1.5 26 48-82 38-63 (109)
10 COG1062 AdhC Zn-dependent alco 89.8 0.22 4.8E-06 41.3 2.1 53 18-80 25-85 (366)
11 COG4384 Mu-like prophage prote 84.7 2.8 6.1E-05 32.1 5.3 40 63-102 87-133 (203)
12 COG0604 Qor NADPH:quinone redu 83.1 1.3 2.9E-05 35.4 3.2 71 18-103 25-108 (326)
13 COG1329 Transcriptional regula 82.9 1.4 3E-05 33.0 3.0 38 70-107 3-50 (166)
14 KOG0025|consensus 81.8 3 6.4E-05 34.4 4.7 72 18-99 46-130 (354)
15 TIGR02819 fdhA_non_GSH formald 79.4 1.6 3.4E-05 35.5 2.5 25 48-81 68-92 (393)
16 TIGR03366 HpnZ_proposed putati 78.4 2 4.2E-05 32.8 2.6 30 49-82 6-36 (280)
17 PF06890 Phage_Mu_Gp45: Bacter 78.0 10 0.00022 28.0 6.2 40 37-84 48-87 (162)
18 KOG0022|consensus 77.1 1.9 4E-05 35.9 2.2 53 17-79 29-90 (375)
19 PF08140 Cuticle_1: Crustacean 75.9 4.8 0.00011 23.4 3.1 26 35-60 2-29 (40)
20 PF02559 CarD_CdnL_TRCF: CarD- 75.1 4.7 0.0001 26.5 3.4 29 72-100 2-38 (98)
21 COG1064 AdhP Zn-dependent alco 74.8 2.2 4.9E-05 35.0 2.1 26 46-80 62-87 (339)
22 cd08230 glucose_DH Glucose deh 73.6 2.5 5.5E-05 33.2 2.1 24 48-81 64-87 (355)
23 COG1465 Predicted alternative 70.7 20 0.00043 29.7 6.6 86 12-100 203-316 (376)
24 PLN02586 probable cinnamyl alc 70.6 3.5 7.6E-05 32.8 2.3 24 48-80 73-96 (360)
25 KOG0024|consensus 67.7 2.1 4.5E-05 35.5 0.5 54 20-82 29-93 (354)
26 PF10794 DUF2606: Protein of u 67.5 31 0.00068 24.8 6.3 67 20-89 41-112 (131)
27 cd08281 liver_ADH_like1 Zinc-d 66.6 4.5 9.8E-05 32.0 2.2 24 48-80 68-91 (371)
28 TIGR02822 adh_fam_2 zinc-bindi 66.5 5 0.00011 31.4 2.4 25 48-81 63-87 (329)
29 PF12508 DUF3714: Protein of u 66.3 17 0.00036 27.8 5.1 39 18-62 66-104 (200)
30 cd08261 Zn_ADH7 Alcohol dehydr 66.2 12 0.00027 28.7 4.5 24 48-80 60-83 (337)
31 PRK10309 galactitol-1-phosphat 66.1 4.9 0.00011 31.3 2.3 26 47-81 59-84 (347)
32 cd08301 alcohol_DH_plants Plan 65.8 5.1 0.00011 31.6 2.3 25 48-81 63-87 (369)
33 cd08269 Zn_ADH9 Alcohol dehydr 65.7 11 0.00024 28.2 4.1 27 48-83 58-84 (312)
34 COG2140 Thermophilic glucose-6 64.7 9.9 0.00021 29.4 3.6 36 63-98 121-157 (209)
35 PLN02178 cinnamyl-alcohol dehy 64.5 5.4 0.00012 32.1 2.3 24 48-80 67-90 (375)
36 PLN02827 Alcohol dehydrogenase 64.0 5.3 0.00011 32.0 2.1 25 48-81 70-94 (378)
37 cd08293 PTGR2 Prostaglandin re 63.1 6.2 0.00013 30.4 2.3 24 48-80 75-98 (345)
38 TIGR01202 bchC 2-desacetyl-2-h 62.5 6.1 0.00013 30.6 2.2 47 48-104 65-115 (308)
39 cd05279 Zn_ADH1 Liver alcohol 62.3 18 0.0004 28.5 4.9 25 48-81 60-84 (365)
40 cd08239 THR_DH_like L-threonin 62.0 7.2 0.00016 30.1 2.5 26 48-82 61-86 (339)
41 TIGR02818 adh_III_F_hyde S-(hy 62.0 6.5 0.00014 31.2 2.3 25 48-81 62-86 (368)
42 PLN02740 Alcohol dehydrogenase 60.9 6.5 0.00014 31.4 2.1 25 48-81 72-96 (381)
43 cd08300 alcohol_DH_class_III c 60.8 6.9 0.00015 31.0 2.3 25 48-81 63-87 (368)
44 TIGR02227 sigpep_I_bact signal 60.6 39 0.00085 24.2 6.0 38 19-56 36-77 (163)
45 TIGR03451 mycoS_dep_FDH mycoth 60.4 7.2 0.00016 30.7 2.3 24 48-80 61-84 (358)
46 PLN02514 cinnamyl-alcohol dehy 60.2 7.5 0.00016 30.7 2.3 24 48-80 70-93 (357)
47 TIGR03214 ura-cupin putative a 59.6 18 0.00039 28.2 4.4 49 49-99 201-252 (260)
48 cd08238 sorbose_phosphate_red 59.6 7.5 0.00016 31.4 2.3 26 48-81 69-94 (410)
49 PRK10083 putative oxidoreducta 59.4 8.4 0.00018 29.6 2.4 25 48-81 60-84 (339)
50 cd08237 ribitol-5-phosphate_DH 58.9 20 0.00044 28.1 4.6 24 48-82 65-88 (341)
51 cd08260 Zn_ADH6 Alcohol dehydr 57.7 11 0.00023 29.1 2.8 25 48-81 61-85 (345)
52 cd08277 liver_alcohol_DH_like 56.7 9.1 0.0002 30.2 2.3 25 48-81 62-86 (365)
53 smart00696 DM9 Repeats found i 56.5 29 0.00062 22.0 4.2 50 40-91 12-63 (71)
54 cd08233 butanediol_DH_like (2R 55.9 9 0.0002 29.8 2.1 24 48-80 71-94 (351)
55 cd05278 FDH_like Formaldehyde 55.1 11 0.00024 28.9 2.5 24 48-80 61-84 (347)
56 TIGR00692 tdh L-threonine 3-de 54.8 11 0.00023 29.2 2.4 25 48-81 62-86 (340)
57 TIGR02817 adh_fam_1 zinc-bindi 54.7 11 0.00024 28.8 2.4 25 48-81 65-89 (336)
58 cd08292 ETR_like_2 2-enoyl thi 54.5 11 0.00024 28.4 2.4 26 48-82 65-90 (324)
59 cd08264 Zn_ADH_like2 Alcohol d 54.2 10 0.00022 28.8 2.2 25 48-81 61-85 (325)
60 COG3450 Predicted enzyme of th 53.8 33 0.00071 24.1 4.5 35 63-99 79-115 (116)
61 cd07376 PLPDE_III_DSD_D-TA_lik 53.5 20 0.00044 28.3 3.8 37 71-108 305-342 (345)
62 cd08287 FDH_like_ADH3 formalde 53.0 11 0.00024 29.0 2.2 24 48-80 60-83 (345)
63 cd08291 ETR_like_1 2-enoyl thi 52.3 12 0.00026 28.7 2.3 26 48-81 67-92 (324)
64 cd08284 FDH_like_2 Glutathione 52.1 12 0.00027 28.6 2.3 24 48-80 60-83 (344)
65 cd08255 2-desacetyl-2-hydroxye 51.3 19 0.00041 26.7 3.1 26 47-81 26-51 (277)
66 cd08278 benzyl_alcohol_DH Benz 51.3 12 0.00026 29.5 2.2 24 48-80 62-85 (365)
67 cd08262 Zn_ADH8 Alcohol dehydr 50.8 13 0.00028 28.6 2.2 25 48-81 70-95 (341)
68 PRK10838 spr outer membrane li 50.6 9.9 0.00021 28.7 1.5 34 36-82 106-139 (190)
69 cd05188 MDR Medium chain reduc 50.5 14 0.00029 26.8 2.2 26 48-82 36-61 (271)
70 cd05284 arabinose_DH_like D-ar 50.5 13 0.00028 28.5 2.2 25 48-81 64-88 (340)
71 cd08285 NADP_ADH NADP(H)-depen 50.2 14 0.00031 28.6 2.4 25 48-81 60-84 (351)
72 cd08235 iditol_2_DH_like L-idi 50.1 14 0.0003 28.4 2.3 24 48-80 60-83 (343)
73 cd08286 FDH_like_ADH2 formalde 49.4 15 0.00032 28.4 2.4 25 48-81 61-85 (345)
74 cd08236 sugar_DH NAD(P)-depend 48.7 16 0.00034 28.1 2.4 25 48-81 59-83 (343)
75 cd08232 idonate-5-DH L-idonate 48.3 14 0.00031 28.3 2.1 24 48-80 60-83 (339)
76 PF10844 DUF2577: Protein of u 48.2 15 0.00033 24.6 2.0 22 71-98 76-97 (100)
77 cd08283 FDH_like_1 Glutathione 48.1 15 0.00032 29.4 2.3 25 48-81 61-85 (386)
78 cd08279 Zn_ADH_class_III Class 47.5 16 0.00034 28.7 2.3 24 48-80 60-83 (363)
79 cd08258 Zn_ADH4 Alcohol dehydr 47.5 15 0.00033 28.1 2.2 25 48-81 62-86 (306)
80 PLN02702 L-idonate 5-dehydroge 47.0 15 0.00033 28.8 2.2 24 48-80 80-103 (364)
81 PF01079 Hint: Hint module; I 46.7 37 0.0008 26.1 4.1 24 62-85 21-45 (217)
82 cd08231 MDR_TM0436_like Hypoth 46.0 17 0.00037 28.3 2.3 30 48-81 61-91 (361)
83 cd05283 CAD1 Cinnamyl alcohol 46.0 17 0.00036 28.2 2.2 24 48-80 60-83 (337)
84 PTZ00354 alcohol dehydrogenase 46.0 18 0.00039 27.3 2.3 24 48-80 65-88 (334)
85 COG1063 Tdh Threonine dehydrog 45.9 18 0.00039 29.0 2.4 54 47-110 61-141 (350)
86 PF09871 DUF2098: Uncharacteri 45.5 55 0.0012 22.0 4.4 34 71-104 2-40 (91)
87 PRK05396 tdh L-threonine 3-deh 45.3 18 0.0004 27.9 2.3 25 48-81 64-88 (341)
88 PRK05889 putative acetyl-CoA c 45.3 45 0.00097 20.5 3.7 29 79-107 42-70 (71)
89 cd08290 ETR 2-enoyl thioester 44.7 19 0.00042 27.6 2.4 26 48-82 70-95 (341)
90 cd08282 PFDH_like Pseudomonas 44.6 19 0.0004 28.6 2.3 24 48-80 60-83 (375)
91 KOG0023|consensus 44.6 18 0.00038 30.2 2.2 24 48-80 72-95 (360)
92 PRK10754 quinone oxidoreductas 44.1 20 0.00044 27.2 2.4 25 48-81 64-88 (327)
93 cd08259 Zn_ADH5 Alcohol dehydr 43.7 20 0.00043 27.0 2.2 25 48-81 61-85 (332)
94 smart00829 PKS_ER Enoylreducta 43.6 19 0.00042 26.0 2.1 26 48-82 30-55 (288)
95 cd08274 MDR9 Medium chain dehy 43.3 19 0.00042 27.6 2.2 25 48-81 84-108 (350)
96 cd08245 CAD Cinnamyl alcohol d 43.2 23 0.0005 27.0 2.6 25 48-81 60-84 (330)
97 cd08297 CAD3 Cinnamyl alcohol 42.9 47 0.001 25.4 4.3 24 48-80 63-86 (341)
98 COG4079 Uncharacterized protei 42.6 30 0.00064 27.9 3.1 28 71-99 261-292 (293)
99 cd08246 crotonyl_coA_red croto 42.6 22 0.00047 28.3 2.4 25 48-81 88-112 (393)
100 cd05285 sorbitol_DH Sorbitol d 42.4 21 0.00046 27.6 2.3 24 48-80 61-84 (343)
101 TIGR00739 yajC preprotein tran 42.4 58 0.0013 21.3 4.1 25 71-95 37-62 (84)
102 PRK11479 hypothetical protein; 42.2 8.4 0.00018 30.9 -0.0 38 32-82 38-75 (274)
103 cd08268 MDR2 Medium chain dehy 41.8 21 0.00046 26.5 2.1 24 48-80 64-87 (328)
104 cd08240 6_hydroxyhexanoate_dh_ 41.6 21 0.00044 27.7 2.1 25 48-81 73-97 (350)
105 cd08266 Zn_ADH_like1 Alcohol d 41.6 22 0.00047 26.7 2.2 25 48-81 64-88 (342)
106 TIGR01751 crot-CoA-red crotony 40.8 22 0.00047 28.5 2.2 24 49-81 85-108 (398)
107 PRK09422 ethanol-active dehydr 40.7 23 0.00051 27.0 2.3 24 48-80 60-83 (338)
108 cd05195 enoyl_red enoyl reduct 40.5 23 0.00051 25.5 2.1 25 48-81 34-58 (293)
109 cd06555 ASCH_PF0470_like ASC-1 40.0 19 0.00041 25.0 1.5 15 71-85 31-45 (109)
110 TIGR03779 Bac_Flav_CT_M Bacter 39.7 68 0.0015 27.2 5.0 38 18-61 269-306 (410)
111 cd08234 threonine_DH_like L-th 39.5 26 0.00057 26.6 2.4 24 48-80 59-82 (334)
112 cd08256 Zn_ADH2 Alcohol dehydr 39.3 60 0.0013 25.1 4.4 26 48-80 69-94 (350)
113 cd08254 hydroxyacyl_CoA_DH 6-h 39.2 25 0.00055 26.6 2.2 24 48-80 63-86 (338)
114 cd08299 alcohol_DH_class_I_II_ 39.1 25 0.00054 28.0 2.3 25 48-81 67-91 (373)
115 cd08298 CAD2 Cinnamyl alcohol 39.0 55 0.0012 24.9 4.1 24 48-80 65-88 (329)
116 TIGR03201 dearomat_had 6-hydro 39.0 28 0.00061 27.2 2.5 24 48-81 60-83 (349)
117 cd08270 MDR4 Medium chain dehy 38.6 28 0.00061 26.0 2.4 25 48-81 58-82 (305)
118 cd08251 polyketide_synthase po 38.5 26 0.00056 25.7 2.1 25 48-81 44-68 (303)
119 cd05282 ETR_like 2-enoyl thioe 38.3 28 0.00062 26.1 2.4 26 48-82 63-88 (323)
120 cd08244 MDR_enoyl_red Possible 38.1 28 0.00061 26.1 2.3 26 48-82 66-91 (324)
121 cd08248 RTN4I1 Human Reticulon 37.8 26 0.00057 26.8 2.2 25 48-81 80-104 (350)
122 PLN03154 putative allyl alcoho 37.8 25 0.00054 27.8 2.0 24 48-80 81-104 (348)
123 cd08273 MDR8 Medium chain dehy 37.5 28 0.0006 26.4 2.2 25 48-81 64-88 (331)
124 cd08265 Zn_ADH3 Alcohol dehydr 37.3 26 0.00057 27.9 2.1 24 48-80 94-117 (384)
125 cd08296 CAD_like Cinnamyl alco 36.6 30 0.00066 26.7 2.3 24 48-80 61-84 (333)
126 cd08249 enoyl_reductase_like e 35.2 34 0.00074 26.5 2.4 25 48-81 61-85 (339)
127 cd08263 Zn_ADH10 Alcohol dehyd 35.1 30 0.00066 27.1 2.2 27 48-80 60-86 (367)
128 cd08253 zeta_crystallin Zeta-c 34.8 31 0.00068 25.4 2.1 26 48-82 64-89 (325)
129 cd08267 MDR1 Medium chain dehy 34.7 34 0.00074 25.4 2.3 25 48-81 65-89 (319)
130 PF12124 Nsp3_PL2pro: Coronavi 34.5 81 0.0018 19.7 3.5 25 71-95 31-56 (66)
131 PF08206 OB_RNB: Ribonuclease 34.1 66 0.0014 19.2 3.1 9 20-28 35-43 (58)
132 PRK13771 putative alcohol dehy 34.1 36 0.00077 26.0 2.4 25 48-81 61-85 (334)
133 cd05286 QOR2 Quinone oxidoredu 33.6 35 0.00076 25.0 2.2 25 48-81 61-85 (320)
134 cd00148 PROF Profilin binds ac 33.5 81 0.0018 21.8 3.9 19 86-104 60-78 (127)
135 PRK11171 hypothetical protein; 33.4 1.9E+02 0.0041 22.5 6.4 50 48-99 205-257 (266)
136 COG3264 Small-conductance mech 33.1 49 0.0011 30.5 3.3 15 71-85 660-674 (835)
137 cd08272 MDR6 Medium chain dehy 33.1 35 0.00076 25.3 2.1 25 48-81 64-88 (326)
138 cd08271 MDR5 Medium chain dehy 33.1 36 0.00077 25.4 2.2 25 48-81 63-87 (325)
139 PF01052 SpoA: Surface present 33.0 60 0.0013 20.0 2.9 25 71-95 28-54 (77)
140 PRK10579 hypothetical protein; 32.8 1.3E+02 0.0028 20.5 4.6 62 35-105 26-88 (94)
141 PRK09880 L-idonate 5-dehydroge 32.3 41 0.00089 26.2 2.5 23 48-81 66-88 (343)
142 PF00235 Profilin: Profilin; 31.8 44 0.00096 22.3 2.3 18 85-102 58-75 (121)
143 TIGR00074 hypC_hupF hydrogenas 31.7 64 0.0014 20.9 2.9 12 71-82 35-46 (76)
144 cd08252 AL_MDR Arginate lyase 31.5 41 0.00089 25.5 2.3 25 48-81 66-90 (336)
145 PRK05585 yajC preprotein trans 31.1 1E+02 0.0022 21.1 4.0 22 71-92 52-74 (106)
146 cd08250 Mgc45594_like Mgc45594 31.1 44 0.00096 25.3 2.4 26 48-82 67-92 (329)
147 PF11901 DUF3421: Protein of u 30.9 68 0.0015 22.1 3.1 49 40-90 68-118 (119)
148 PF07883 Cupin_2: Cupin domain 30.9 86 0.0019 18.2 3.3 40 57-98 28-68 (71)
149 cd06819 PLPDE_III_LS_D-TA Type 30.1 70 0.0015 25.3 3.5 37 71-108 316-353 (358)
150 PF02699 YajC: Preprotein tran 30.0 17 0.00037 23.6 0.0 28 71-99 36-64 (82)
151 cd04456 S1_IF1A_like S1_IF1A_l 30.0 62 0.0014 20.9 2.7 22 18-39 40-61 (78)
152 cd05276 p53_inducible_oxidored 29.8 42 0.00091 24.6 2.0 25 48-81 64-88 (323)
153 TIGR03784 marine_sortase sorta 29.6 58 0.0013 24.1 2.8 32 71-102 108-139 (174)
154 cd05281 TDH Threonine dehydrog 29.4 43 0.00093 25.8 2.1 24 48-80 64-87 (341)
155 smart00392 PROF Profilin. Bind 29.2 56 0.0012 22.6 2.5 18 86-103 62-79 (129)
156 PF06560 GPI: Glucose-6-phosph 29.1 76 0.0017 23.8 3.3 50 49-98 82-141 (182)
157 PRK04190 glucose-6-phosphate i 28.8 1.1E+02 0.0024 23.0 4.1 35 63-97 115-150 (191)
158 COG4043 Preprotein translocase 28.7 27 0.0006 24.4 0.8 12 71-82 33-44 (111)
159 COG2217 ZntA Cation transport 28.5 57 0.0012 29.4 3.0 31 48-79 245-278 (713)
160 PF11302 DUF3104: Protein of u 28.5 31 0.00067 22.6 1.0 15 70-84 4-18 (75)
161 PRK06531 yajC preprotein trans 28.2 1.1E+02 0.0024 21.3 3.8 34 71-104 36-71 (113)
162 PF01455 HupF_HypC: HupF/HypC 28.1 64 0.0014 20.3 2.4 12 71-82 37-48 (68)
163 PRK12278 50S ribosomal protein 28.0 2.3E+02 0.005 22.0 5.9 21 71-91 13-36 (221)
164 TIGR02876 spore_yqfD sporulati 27.9 1.9E+02 0.0042 23.9 5.8 36 71-107 208-245 (382)
165 PF13856 Gifsy-2: ATP-binding 27.6 1.2E+02 0.0026 19.8 3.8 33 67-101 53-85 (95)
166 TIGR02824 quinone_pig3 putativ 27.5 50 0.0011 24.4 2.1 25 48-81 64-88 (325)
167 cd08275 MDR3 Medium chain dehy 27.5 51 0.0011 24.7 2.2 25 48-81 63-87 (337)
168 cd05289 MDR_like_2 alcohol deh 26.5 52 0.0011 24.1 2.0 26 48-82 66-91 (309)
169 PRK10689 transcription-repair 25.9 87 0.0019 29.8 3.8 31 71-101 476-514 (1147)
170 PF07378 FlbT: Flagellar prote 25.7 57 0.0012 23.1 2.0 34 70-104 3-42 (126)
171 PRK02268 hypothetical protein; 25.4 34 0.00073 24.8 0.8 16 65-80 28-44 (141)
172 cd04451 S1_IF1 S1_IF1: Transla 24.8 45 0.00097 20.2 1.2 11 71-81 40-50 (64)
173 cd08276 MDR7 Medium chain dehy 24.8 61 0.0013 24.3 2.2 25 48-81 64-88 (336)
174 PF02643 DUF192: Uncharacteriz 24.4 21 0.00046 24.1 -0.4 25 52-82 84-108 (108)
175 PF03293 Pox_RNA_pol: Poxvirus 24.4 1.8E+02 0.0038 21.5 4.4 34 71-104 98-131 (160)
176 PF12852 Cupin_6: Cupin 24.4 60 0.0013 23.2 2.0 25 64-88 51-75 (186)
177 PF11948 DUF3465: Protein of u 24.4 1.1E+02 0.0023 22.1 3.2 11 71-81 85-95 (131)
178 TIGR00580 mfd transcription-re 24.1 98 0.0021 28.8 3.7 32 70-101 326-365 (926)
179 cd06820 PLPDE_III_LS_D-TA_like 24.0 1.1E+02 0.0023 24.3 3.5 37 71-108 311-348 (353)
180 cd03703 aeIF5B_II aeIF5B_II: T 23.6 97 0.0021 21.5 2.8 19 71-89 26-47 (110)
181 CHL00010 infA translation init 23.4 1.2E+02 0.0025 19.4 3.0 11 71-81 46-56 (78)
182 KOG3309|consensus 23.4 24 0.00053 26.2 -0.2 22 61-82 49-70 (159)
183 PF06865 DUF1255: Protein of u 23.1 1.6E+02 0.0034 20.0 3.7 64 35-107 26-90 (94)
184 PF11549 Sec31: Protein transp 22.9 30 0.00064 21.1 0.1 19 40-58 29-47 (51)
185 cd05794 S1_EF-P_repeat_2 S1_EF 22.9 56 0.0012 20.1 1.3 17 68-84 34-50 (56)
186 PRK13914 invasion associated s 22.8 61 0.0013 28.1 2.0 35 36-83 404-438 (481)
187 PF00924 MS_channel: Mechanose 22.8 1.2E+02 0.0027 21.6 3.4 21 71-91 60-80 (206)
188 PRK05886 yajC preprotein trans 22.4 2.1E+02 0.0045 19.8 4.3 8 50-57 52-59 (109)
189 PRK12426 elongation factor P; 22.4 1.3E+02 0.0028 22.7 3.5 40 63-102 45-87 (185)
190 PHA02951 Hypothetical protein; 22.3 4.6E+02 0.0099 21.8 7.6 84 13-99 92-181 (337)
191 PF13375 RnfC_N: RnfC Barrel s 22.3 92 0.002 21.0 2.5 11 70-80 44-54 (101)
192 PRK12784 hypothetical protein; 22.2 1E+02 0.0022 20.6 2.5 23 52-79 44-66 (84)
193 PHA02965 hypothetical protein; 22.2 2.6E+02 0.0057 23.7 5.5 82 12-99 119-209 (466)
194 PRK10861 signal peptidase I; P 22.0 3E+02 0.0065 22.5 5.8 67 19-92 98-169 (324)
195 COG0261 RplU Ribosomal protein 21.9 2.8E+02 0.0061 19.2 4.8 30 71-102 13-45 (103)
196 PRK11507 ribosome-associated p 21.7 2.3E+02 0.005 18.1 4.2 28 71-98 38-69 (70)
197 PRK00276 infA translation init 21.6 57 0.0012 20.4 1.3 11 71-81 46-56 (72)
198 cd06812 PLPDE_III_DSD_D-TA_lik 21.5 1.2E+02 0.0027 24.1 3.4 37 71-108 331-369 (374)
199 cd07557 trimeric_dUTPase Trime 21.5 1.4E+02 0.003 18.8 3.1 35 20-56 19-55 (92)
200 TIGR02480 fliN flagellar motor 21.3 1.3E+02 0.0029 18.9 3.0 26 71-96 28-55 (77)
201 PF09285 Elong-fact-P_C: Elong 21.3 88 0.0019 19.2 2.0 18 68-85 34-51 (56)
202 PF07591 PT-HINT: Pretoxin HIN 21.2 32 0.00069 24.0 0.0 19 63-82 5-24 (130)
203 PF06236 MelC1: Tyrosinase co- 21.1 1.2E+02 0.0027 21.6 3.0 18 85-102 70-87 (125)
204 PRK04542 elongation factor P; 21.1 1.4E+02 0.0031 22.5 3.5 40 63-102 47-89 (189)
205 TIGR00061 L21 ribosomal protei 21.1 2.8E+02 0.006 18.8 5.8 21 71-91 12-35 (101)
206 PF13533 Biotin_lipoyl_2: Biot 21.0 68 0.0015 18.5 1.4 9 71-79 23-31 (50)
207 cd08247 AST1_like AST1 is a cy 21.0 91 0.002 24.1 2.5 25 48-80 65-89 (352)
208 COG0231 Efp Translation elonga 20.8 1.5E+02 0.0032 21.0 3.4 40 63-102 47-89 (131)
209 PF12791 RsgI_N: Anti-sigma fa 20.7 94 0.002 18.2 2.0 12 71-82 25-36 (56)
210 PRK14578 elongation factor P; 20.7 1.4E+02 0.0031 22.4 3.5 40 63-102 47-89 (187)
211 PF13403 Hint_2: Hint domain 20.7 2E+02 0.0043 20.4 4.1 34 62-95 11-44 (147)
212 PRK06033 hypothetical protein; 20.5 1.4E+02 0.003 19.4 2.9 25 71-95 27-53 (83)
213 COG0309 HypE Hydrogenase matur 20.4 71 0.0015 26.5 1.9 22 65-86 154-175 (339)
214 cd08243 quinone_oxidoreductase 20.2 85 0.0018 23.3 2.2 23 48-81 63-85 (320)
215 PF04943 Pox_F11: Poxvirus F11 20.1 5.3E+02 0.012 21.7 8.0 86 11-99 82-173 (366)
216 PRK10334 mechanosensitive chan 20.1 1.3E+02 0.0028 23.9 3.2 18 71-88 129-146 (286)
217 cd08241 QOR1 Quinone oxidoredu 20.1 88 0.0019 23.0 2.2 25 48-81 64-88 (323)
218 TIGR02178 yeiP elongation fact 20.0 1.3E+02 0.0029 22.6 3.1 40 63-102 45-87 (186)
No 1
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-41 Score=226.81 Aligned_cols=96 Identities=44% Similarity=0.785 Sum_probs=93.8
Q ss_pred cceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEECCE
Q psy12951 14 QKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQ 93 (111)
Q Consensus 14 ~~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~~g~ 93 (111)
|+|+||+|||||++.++|++|+|||+||+++++|+++|+|+|||+|..+++|+.+|++||+||+|+|++|+|+++++||+
T Consensus 1 m~ikPL~DRVlVk~~e~EekT~gGIvlpdsakeK~~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~dge 80 (96)
T COG0234 1 MKIKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKIDGE 80 (96)
T ss_pred CCceecCCEEEEEEchhhccccCcEEecCccccCCcceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEECCE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCcEEEEeec
Q psy12951 94 ELHLFKEADLLAVIEK 109 (111)
Q Consensus 94 ~y~iv~~~DIlavi~~ 109 (111)
+|++++++||||++++
T Consensus 81 eylil~e~DILAiv~~ 96 (96)
T COG0234 81 EYLILSESDILAIVEK 96 (96)
T ss_pred EEEEechHHeeEEecC
Confidence 9999999999999874
No 2
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=100.00 E-value=1.1e-38 Score=216.71 Aligned_cols=95 Identities=43% Similarity=0.773 Sum_probs=92.5
Q ss_pred cceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEECCE
Q psy12951 14 QKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQ 93 (111)
Q Consensus 14 ~~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~~g~ 93 (111)
++|+||+|||||++.+++++|+|||+||+++++++++|+|+|||||+.+++|++.|++||+||+|+|++|+|++|+++++
T Consensus 1 ~~i~Pl~drVLV~~~~~e~~T~gGI~Lp~~a~~k~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~~~~ 80 (95)
T PRK00364 1 MNLKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKIDGE 80 (95)
T ss_pred CcceEcCCEEEEEEcccCccccceEEcCccccCCcceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEECCE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCcEEEEee
Q psy12951 94 ELHLFKEADLLAVIE 108 (111)
Q Consensus 94 ~y~iv~~~DIlavi~ 108 (111)
+|+|+|++||||+++
T Consensus 81 ~y~iv~~~DIlavi~ 95 (95)
T PRK00364 81 EYLILRESDILAIVE 95 (95)
T ss_pred EEEEEEHHHEEEEeC
Confidence 999999999999985
No 3
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=100.00 E-value=1e-37 Score=214.14 Aligned_cols=93 Identities=44% Similarity=0.759 Sum_probs=88.1
Q ss_pred hcccceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEE
Q psy12951 11 TLSQKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEV 90 (111)
Q Consensus 11 ~~~~~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~ 90 (111)
.++++|+||+|||||++.++|++|+|||+||+++++|+++|+|+|||+|..+ .|++||+||+|+|++|+|++|++
T Consensus 7 ~~~~~ikPL~dRVLVk~~~~e~kT~gGIiLP~sakekp~~g~VvAVG~G~~~-----~~~~Vk~GD~Vl~~~y~Gtevk~ 81 (100)
T PTZ00414 7 PALKKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATKD-----WTPTVKVGDTVLLPEFGGSSVKV 81 (100)
T ss_pred cccccceecCCEEEEEEcccccccccCEEcccccccCCceeEEEEECCCCcc-----ccceecCCCEEEEcCCCCcEEEE
Confidence 5578899999999999999999999999999999999999999999999753 48899999999999999999999
Q ss_pred CCEEEEEEecCcEEEEee
Q psy12951 91 EGQELHLFKEADLLAVIE 108 (111)
Q Consensus 91 ~g~~y~iv~~~DIlavi~ 108 (111)
+|++|++++++||||+++
T Consensus 82 dg~ey~i~~e~DILavi~ 99 (100)
T PTZ00414 82 EGEEFFLYNEDSLLGVLQ 99 (100)
T ss_pred CCEEEEEEEhHHEEEEec
Confidence 999999999999999986
No 4
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=100.00 E-value=2.5e-37 Score=209.31 Aligned_cols=93 Identities=48% Similarity=0.852 Sum_probs=90.9
Q ss_pred ceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEECCEE
Q psy12951 15 KFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQE 94 (111)
Q Consensus 15 ~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~~g~~ 94 (111)
+|+||+|||||++.++|++|+|||+||+++++++++|+|+|||||+.+++|++.|++|++||+|+|++|+|++|+++|++
T Consensus 1 ~i~Pl~DrVLV~~~~~e~~T~~GI~Lp~~~~~k~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~ 80 (93)
T cd00320 1 KIKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLDGEE 80 (93)
T ss_pred CceecCCEEEEEEccccceecceEEeCCCcCCCceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEECCEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcEEEEe
Q psy12951 95 LHLFKEADLLAVI 107 (111)
Q Consensus 95 y~iv~~~DIlavi 107 (111)
|+|+|++||||++
T Consensus 81 y~i~~~~DIla~i 93 (93)
T cd00320 81 YLILRESDILAVI 93 (93)
T ss_pred EEEEEHHHEEEEC
Confidence 9999999999985
No 5
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=100.00 E-value=7e-37 Score=206.89 Aligned_cols=91 Identities=34% Similarity=0.536 Sum_probs=86.2
Q ss_pred cceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEECCE
Q psy12951 14 QKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQ 93 (111)
Q Consensus 14 ~~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~~g~ 93 (111)
++|+||+|||||++.+++++|+|||+||+++++|++.|+|+|||+|.. ..|++||+||+|+|++|+|++|+++|+
T Consensus 1 ~~i~Pl~DRVLVk~~~~e~~T~gGI~Lp~~a~ek~~~G~VvavG~g~~-----~~~~~Vk~GD~Vl~~~y~g~ev~~~~~ 75 (91)
T PRK14533 1 MKVIPLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVGKLDD-----EEDFDIKVGDKVIFSKYAGTEIKIDDE 75 (91)
T ss_pred CCceEcCCEEEEEEccccceecccEEecccccCCcceEEEEEECCCCc-----cccccccCCCEEEEccCCCeEEEECCE
Confidence 479999999999999999999999999999999999999999999852 458899999999999999999999999
Q ss_pred EEEEEecCcEEEEeec
Q psy12951 94 ELHLFKEADLLAVIEK 109 (111)
Q Consensus 94 ~y~iv~~~DIlavi~~ 109 (111)
+|++++++||||++++
T Consensus 76 ~y~iv~e~DILa~i~~ 91 (91)
T PRK14533 76 DYIIIDVNDILAKIEE 91 (91)
T ss_pred EEEEEEhHhEEEEeeC
Confidence 9999999999999985
No 6
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=100.00 E-value=2.5e-35 Score=198.97 Aligned_cols=93 Identities=47% Similarity=0.772 Sum_probs=87.7
Q ss_pred ceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEECCEE
Q psy12951 15 KFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQE 94 (111)
Q Consensus 15 ~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~~g~~ 94 (111)
+|+||+|||||++.+.+++|+|||+||+++++++++|+|||||+|+.+.+|+..|+.|++||+|+|++|+|++++++|++
T Consensus 1 ki~Pl~drVLV~~~~~e~~T~~GiiLp~~~~~~~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~ 80 (93)
T PF00166_consen 1 KIKPLGDRVLVKKIEAEEKTASGIILPESAKEKPNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKFDGEK 80 (93)
T ss_dssp EEEESTTEEEEEECSCTCTCTTSCCE-CCSSSSEEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEETTEE
T ss_pred CceecCCEEEEEEccccceecceEEeccccccccceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEECCEE
Confidence 58999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcEEEEe
Q psy12951 95 LHLFKEADLLAVI 107 (111)
Q Consensus 95 y~iv~~~DIlavi 107 (111)
|+++|++||||++
T Consensus 81 ~~~~~~~dIlavi 93 (93)
T PF00166_consen 81 YLIVREDDILAVI 93 (93)
T ss_dssp EEEEEGGGEEEEE
T ss_pred EEEEEHHHeEEEC
Confidence 9999999999986
No 7
>KOG1641|consensus
Probab=99.98 E-value=3.9e-33 Score=191.10 Aligned_cols=97 Identities=48% Similarity=0.783 Sum_probs=92.5
Q ss_pred hcccceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEE
Q psy12951 11 TLSQKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEV 90 (111)
Q Consensus 11 ~~~~~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~ 90 (111)
..++++.|+.|||||++.+++++|+|||+||+++++|.++|+|+|||||..+..|+.+|..|++||+|||++|+|++|++
T Consensus 6 ~~~kk~vPl~DRVLVqr~~a~~KT~gGilLPEks~~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpeygGt~V~l 85 (104)
T KOG1641|consen 6 WEIKKVVPLLDRVLVQRIEAPTKTAGGILLPEKSVGKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPEYGGTKVKL 85 (104)
T ss_pred hhhhhhccccceeeeeeeeccccccceeEeccccccccceEEEEEEcCccccCCCCCcCccccCCCEEEeeccCCcEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-EEEEEEecCcEEEEe
Q psy12951 91 EG-QELHLFKEADLLAVI 107 (111)
Q Consensus 91 ~g-~~y~iv~~~DIlavi 107 (111)
++ ++|+++|.+|+|+.+
T Consensus 86 ~~~~~~~~fr~e~~l~~~ 103 (104)
T KOG1641|consen 86 GDEDEYHLFRDEDDLLAI 103 (104)
T ss_pred cCCceeEEecchhhhhhh
Confidence 85 699999999998865
No 8
>KOG1197|consensus
Probab=91.95 E-value=0.13 Score=41.65 Aligned_cols=41 Identities=34% Similarity=0.460 Sum_probs=29.0
Q ss_pred cceEE-eccCc--cccceeeEEEEecCceeCCCCeeecceeeeCCEEEccC-CC
Q psy12951 35 KGGVL-IPEKA--QQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK-FG 84 (111)
Q Consensus 35 ~gGIi-LP~~~--~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~-y~ 84 (111)
..||| .|+.- -.+.-.|+|+|||.|.. +.++||+|.|-. |+
T Consensus 55 RkGlY~~~plPytpGmEaaGvVvAvG~gvt---------drkvGDrVayl~~~g 99 (336)
T KOG1197|consen 55 RKGLYDPAPLPYTPGMEAAGVVVAVGEGVT---------DRKVGDRVAYLNPFG 99 (336)
T ss_pred hccccCCCCCCcCCCcccceEEEEecCCcc---------ccccccEEEEeccch
Confidence 34677 33321 23567899999999986 579999999855 44
No 9
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=90.27 E-value=0.17 Score=33.60 Aligned_cols=26 Identities=46% Similarity=0.714 Sum_probs=21.0
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
...|+|+++|++.. .+++||+|....
T Consensus 38 E~~G~V~~vG~~v~---------~~~~Gd~V~~~~ 63 (109)
T PF08240_consen 38 EGVGVVVAVGPGVT---------DFKVGDRVVVSP 63 (109)
T ss_dssp EEEEEEEEESTTTT---------SSGTT-EEEEES
T ss_pred ceeeeeeeeccccc---------cccccceeeeec
Confidence 57899999999875 489999999854
No 10
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=89.81 E-value=0.22 Score=41.26 Aligned_cols=53 Identities=32% Similarity=0.374 Sum_probs=35.5
Q ss_pred eeCCeEEEEecCC-----CCcccceEEeccCc---cccceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 18 PLLDRILVIKDEP-----LTKTKGGVLIPEKA---QQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 18 PlgDrVLVk~~~~-----e~~T~gGIiLP~~~---~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
|--|-|||+.... .-.+-+|.+ |+.- -.-.-.|+|.+||+|.. +||+||+|+.
T Consensus 25 P~~gEVlVri~AtGVCHTD~~~~~G~~-p~~~P~vLGHEgAGiVe~VG~gVt---------~vkpGDhVI~ 85 (366)
T COG1062 25 PRAGEVLVRITATGVCHTDAHTLSGDD-PEGFPAVLGHEGAGIVEAVGEGVT---------SVKPGDHVIL 85 (366)
T ss_pred CCCCeEEEEEEEeeccccchhhhcCCC-CCCCceecccccccEEEEecCCcc---------ccCCCCEEEE
Confidence 7788899988622 223333332 2221 12356799999999987 7999999985
No 11
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=84.66 E-value=2.8 Score=32.14 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=29.1
Q ss_pred CCCeeecceeeeCCEEEccCCC-------ceEEEECCEEEEEEecCc
Q psy12951 63 PNGEYIKPVVNVGDKVLLPKFG-------GTKIEVEGQELHLFKEAD 102 (111)
Q Consensus 63 ~~G~~~p~~vk~GD~Vl~~~y~-------g~~v~~~g~~y~iv~~~D 102 (111)
.++...|+.++.||+++|..++ |..++.+-+.|.+....+
T Consensus 87 ~~~syR~~GL~aGeT~iY~~eG~~i~Lteg~~Ie~~ck~~~v~a~~~ 133 (203)
T COG4384 87 QHGSYRITGLKAGETVIYNHEGAKIVLTEGGIIEADCKTLTVNAATG 133 (203)
T ss_pred cCCccccccccCCceEEEeccCcEEEEccCcEEEEeccEEEEecCCc
Confidence 4566678899999999999876 345666667777555444
No 12
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=83.06 E-value=1.3 Score=35.37 Aligned_cols=71 Identities=28% Similarity=0.337 Sum_probs=43.2
Q ss_pred eeCCeEEEEecCC-----CCcccceEE-----eccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccC-CCce
Q psy12951 18 PLLDRILVIKDEP-----LTKTKGGVL-----IPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK-FGGT 86 (111)
Q Consensus 18 PlgDrVLVk~~~~-----e~~T~gGIi-----LP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~-y~g~ 86 (111)
|--+.|||+.... +.....|-. +|- .-..-..|+|+++|++.. ..++||+|.+.. ..
T Consensus 25 p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~-i~G~d~aG~V~avG~~V~---------~~~~GdrV~~~~~~~-- 92 (326)
T COG0604 25 PGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPF-IPGSEAAGVVVAVGSGVT---------GFKVGDRVAALGGVG-- 92 (326)
T ss_pred CCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCC-cccceeEEEEEEeCCCCC---------CcCCCCEEEEccCCC--
Confidence 6668899998732 222333321 122 123357899999999876 348999999984 21
Q ss_pred EEEECC--EEEEEEecCcE
Q psy12951 87 KIEVEG--QELHLFKEADL 103 (111)
Q Consensus 87 ~v~~~g--~~y~iv~~~DI 103 (111)
.+| -+|..+.++.+
T Consensus 93 ---~~G~~AEy~~v~a~~~ 108 (326)
T COG0604 93 ---RDGGYAEYVVVPADWL 108 (326)
T ss_pred ---CCCcceeEEEecHHHc
Confidence 112 36666665433
No 13
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=82.93 E-value=1.4 Score=32.97 Aligned_cols=38 Identities=26% Similarity=0.529 Sum_probs=25.7
Q ss_pred ceeeeCCEEEccCCCceEE------EECC--EEEEEEe--cCcEEEEe
Q psy12951 70 PVVNVGDKVLLPKFGGTKI------EVEG--QELHLFK--EADLLAVI 107 (111)
Q Consensus 70 ~~vk~GD~Vl~~~y~g~~v------~~~g--~~y~iv~--~~DIlavi 107 (111)
+.+++||+|+||.|+.-.| ++.| .+|+++. .+|....+
T Consensus 3 ~~Fk~Gd~VVYP~HGvG~I~~Ieeke~~Ge~~~yyVI~f~~~dm~v~V 50 (166)
T COG1329 3 MAFKIGDHVVYPAHGVGIIQAIEEKEIAGETLEYYVIDFPQSDMTVMV 50 (166)
T ss_pred ccccCCCEEEecCCCceeeehhhhHhhcCceeEEEEEEEcCCCcEEEe
Confidence 4689999999999984333 3455 4777765 44555444
No 14
>KOG0025|consensus
Probab=81.79 E-value=3 Score=34.38 Aligned_cols=72 Identities=26% Similarity=0.216 Sum_probs=43.0
Q ss_pred eeCCeEEEEecCCCCcc-----cceEEe--ccC--ccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCC-ceE
Q psy12951 18 PLLDRILVIKDEPLTKT-----KGGVLI--PEK--AQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFG-GTK 87 (111)
Q Consensus 18 PlgDrVLVk~~~~e~~T-----~gGIiL--P~~--~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~-g~~ 87 (111)
|..| |+|+-+.+.-.. --|.|= |+- .......|+||+||++.. .+|+||+|+-..-+ |+.
T Consensus 46 ~~s~-v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~vk---------gfk~Gd~VIp~~a~lGtW 115 (354)
T KOG0025|consen 46 PGSD-VLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSNVK---------GFKPGDWVIPLSANLGTW 115 (354)
T ss_pred CCCc-eeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCCcC---------ccCCCCeEeecCCCCccc
Confidence 5666 888887554222 235441 221 123467899999998654 48999999966533 533
Q ss_pred ---EEECCEEEEEEe
Q psy12951 88 ---IEVEGQELHLFK 99 (111)
Q Consensus 88 ---v~~~g~~y~iv~ 99 (111)
..+++.+++-+.
T Consensus 116 ~t~~v~~e~~Li~vd 130 (354)
T KOG0025|consen 116 RTEAVFSESDLIKVD 130 (354)
T ss_pred eeeEeecccceEEcC
Confidence 344544444443
No 15
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=79.43 E-value=1.6 Score=35.52 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.2
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|.+.
T Consensus 68 E~~G~V~~vG~~V~---------~~~vGdrV~~~ 92 (393)
T TIGR02819 68 EITGEVIEKGRDVE---------FIKIGDIVSVP 92 (393)
T ss_pred eeEEEEEEEcCccc---------cccCCCEEEEe
Confidence 46899999999865 58999999774
No 16
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=78.41 E-value=2 Score=32.77 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=21.3
Q ss_pred eeeEEEEecCceeC-CCCeeecceeeeCCEEEccC
Q psy12951 49 NNAVVVAVGPGART-PNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 49 ~~G~VvaVG~G~~~-~~G~~~p~~vk~GD~Vl~~~ 82 (111)
..|+|+++|++... ..|. .+++||+|....
T Consensus 6 ~~G~V~~vG~~v~~~~~~~----~~~~GdrV~~~~ 36 (280)
T TIGR03366 6 IVGEVVALRGGFTPADDGV----PLRLGQRVVWSV 36 (280)
T ss_pred cceEEEEeCCCccccccCC----CCCCCCEEEEcC
Confidence 57999999998741 1121 478999998754
No 17
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=78.01 E-value=10 Score=28.04 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=26.7
Q ss_pred eEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCC
Q psy12951 37 GVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFG 84 (111)
Q Consensus 37 GIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~ 84 (111)
+|+||-. .+...|.|+++..++ ..|-.++.|+.++|.+++
T Consensus 48 ~vvl~lG--G~rs~~Vvia~~d~~------yR~~~L~~GEvalY~~~G 87 (162)
T PF06890_consen 48 AVVLFLG--GDRSHGVVIAVEDRR------YRPKGLKPGEVALYDDEG 87 (162)
T ss_pred EEEEEec--cCCcceEEEEeCCcc------ccccCCCCCcEEEEcCCC
Confidence 4555542 345677778777544 344468999999999764
No 18
>KOG0022|consensus
Probab=77.15 E-value=1.9 Score=35.86 Aligned_cols=53 Identities=23% Similarity=0.245 Sum_probs=33.7
Q ss_pred eeeCCeEEEEec-----CCCCcccceEEeccCcc----ccceeeEEEEecCceeCCCCeeecceeeeCCEEE
Q psy12951 17 RPLLDRILVIKD-----EPLTKTKGGVLIPEKAQ----QEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVL 79 (111)
Q Consensus 17 ~PlgDrVLVk~~-----~~e~~T~gGIiLP~~~~----~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl 79 (111)
.|-...|.||-+ -....+=+|-- |+..- ...-.|+|.+||+|.. .+++||+|+
T Consensus 29 pPka~EVRIKI~~t~vCHTD~~~~~g~~-~~~~fP~IlGHEaaGIVESvGegV~---------~vk~GD~Vi 90 (375)
T KOG0022|consen 29 PPKAHEVRIKILATGVCHTDAYVWSGKD-PEGLFPVILGHEAAGIVESVGEGVT---------TVKPGDHVI 90 (375)
T ss_pred CCCCceEEEEEEEEeeccccceeecCCC-ccccCceEecccceeEEEEecCCcc---------ccCCCCEEe
Confidence 377777777765 22222323322 33221 1246799999999886 699999998
No 19
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=75.87 E-value=4.8 Score=23.40 Aligned_cols=26 Identities=23% Similarity=0.570 Sum_probs=17.4
Q ss_pred cceEEeccCccccc--eeeEEEEecCce
Q psy12951 35 KGGVLIPEKAQQEV--NNAVVVAVGPGA 60 (111)
Q Consensus 35 ~gGIiLP~~~~~k~--~~G~VvaVG~G~ 60 (111)
.|||+.|+...... -.+.|+.+||.-
T Consensus 2 ~SGii~~dG~~~q~~~~~a~ivl~GpSG 29 (40)
T PF08140_consen 2 PSGIITPDGTNVQFPHGVANIVLIGPSG 29 (40)
T ss_pred CCceECCCCCEEECCcccceEEEECCce
Confidence 48999999754332 223789999743
No 20
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=75.10 E-value=4.7 Score=26.49 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=19.0
Q ss_pred eeeCCEEEccCCCce------EEEECC--EEEEEEec
Q psy12951 72 VNVGDKVLLPKFGGT------KIEVEG--QELHLFKE 100 (111)
Q Consensus 72 vk~GD~Vl~~~y~g~------~v~~~g--~~y~iv~~ 100 (111)
+++||.|+++.++-. +.++.| .+|+++..
T Consensus 2 f~~GD~VVh~~~Gv~~i~~i~~~~~~~~~~~yy~L~~ 38 (98)
T PF02559_consen 2 FKIGDYVVHPNHGVGRIEGIEEIEFGGEKQEYYVLEY 38 (98)
T ss_dssp --TTSEEEETTTEEEEEEEEEEEECTTEEEEEEEEEE
T ss_pred CCCCCEEEECCCceEEEEEEEEEeeCCeeEEEEEEEE
Confidence 579999999999842 234444 47777754
No 21
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=74.83 E-value=2.2 Score=35.01 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=22.3
Q ss_pred ccceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 46 QEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 46 ~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
.-...|+|++||++.. .+|+||+|-.
T Consensus 62 GHEivG~V~~vG~~V~---------~~k~GDrVgV 87 (339)
T COG1064 62 GHEIVGTVVEVGEGVT---------GLKVGDRVGV 87 (339)
T ss_pred CcceEEEEEEecCCCc---------cCCCCCEEEe
Confidence 4468899999999876 5899999988
No 22
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=73.55 E-value=2.5 Score=33.16 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=19.6
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++ . .+++||+|+..
T Consensus 64 e~~G~V~~vG~~-~---------~~~vGdrV~~~ 87 (355)
T cd08230 64 EALGVVEEVGDG-S---------GLSPGDLVVPT 87 (355)
T ss_pred ccceEEEEecCC-C---------CCCCCCEEEec
Confidence 467999999986 4 47899999864
No 23
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=70.68 E-value=20 Score=29.65 Aligned_cols=86 Identities=24% Similarity=0.329 Sum_probs=50.6
Q ss_pred cccceeee--CCeEEEEecCC----C----CcccceEEec--cCccc--------cceeeEEEEecCceeC-CCCeeecc
Q psy12951 12 LSQKFRPL--LDRILVIKDEP----L----TKTKGGVLIP--EKAQQ--------EVNNAVVVAVGPGART-PNGEYIKP 70 (111)
Q Consensus 12 ~~~~i~Pl--gDrVLVk~~~~----e----~~T~gGIiLP--~~~~~--------k~~~G~VvaVG~G~~~-~~G~~~p~ 70 (111)
.+..+.|+ ||||-|--+.- | -.+++|++|= ++.++ +.|.|-|-|-= +. .++++--.
T Consensus 203 ~vt~ieplG~gDRVCVDTcsLm~~gEGMLVGs~s~gmFlVhsEs~espYVAaRPFRVNAG~VhaYi---~vPg~kTkYLa 279 (376)
T COG1465 203 TVTEIEPLGSGDRVCVDTCSLMTRGEGMLVGSQSRGMFLVHSESEESPYVAARPFRVNAGAVHAYI---RVPGGKTKYLA 279 (376)
T ss_pred EEEEEeecCCCceEEEeeecccccCCceEeecccCcEEEEecccccCcccccCceeecccceeEEE---EcCCCceEEhh
Confidence 45778887 59999887632 2 2356788773 33222 13445444321 11 12222233
Q ss_pred eeeeCCEEEccCCCceE-------EEECCEEEEEEec
Q psy12951 71 VVNVGDKVLLPKFGGTK-------IEVEGQELHLFKE 100 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~g~~-------v~~~g~~y~iv~~ 100 (111)
.++.||.|+.-+|.|.. ++++...+++++.
T Consensus 280 EL~aGDeV~iVD~dGr~R~aiVGRvKIErRPl~lIeA 316 (376)
T COG1465 280 ELKAGDEVLIVDFDGRTRSAIVGRVKIERRPLMLIEA 316 (376)
T ss_pred hhcCCCeEEEEecCCceeEEEEEEEEeecCceEEEEE
Confidence 89999999999999832 4666666666653
No 24
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=70.61 E-value=3.5 Score=32.79 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=19.9
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|.+
T Consensus 73 E~~G~V~~vG~~v~---------~~~vGdrV~~ 96 (360)
T PLN02586 73 EIVGIVTKLGKNVK---------KFKEGDRVGV 96 (360)
T ss_pred ceeEEEEEECCCCC---------ccCCCCEEEE
Confidence 46799999998764 4789999974
No 25
>KOG0024|consensus
Probab=67.74 E-value=2.1 Score=35.49 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=36.6
Q ss_pred CCeEEEEec-------CCCCcccceEEeccCc----cccceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 20 LDRILVIKD-------EPLTKTKGGVLIPEKA----QQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 20 gDrVLVk~~-------~~e~~T~gGIiLP~~~----~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
-|-|||+.. +...-+.|+|-.+.-. -.-...|+|..||++.. .+|+||+|....
T Consensus 29 p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk---------~LkVGDrVaiEp 93 (354)
T KOG0024|consen 29 PDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK---------HLKVGDRVAIEP 93 (354)
T ss_pred CCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc---------ccccCCeEEecC
Confidence 355676654 3345566666544311 13467899999999887 699999999854
No 26
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=67.52 E-value=31 Score=24.76 Aligned_cols=67 Identities=9% Similarity=0.167 Sum_probs=48.7
Q ss_pred CCeEEEEecCCCCcccceE--Ee---ccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEE
Q psy12951 20 LDRILVIKDEPLTKTKGGV--LI---PEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIE 89 (111)
Q Consensus 20 gDrVLVk~~~~e~~T~gGI--iL---P~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~ 89 (111)
.+-|-....+++.+..-|+ .| |++ ...|+.-..+.+| +.+.+|+.++-.++.|+..+|-+-+++.+.
T Consensus 41 ~~pVT~hVen~e~~pi~~~ev~lmKa~ds-~~qPs~eig~~IG--KTD~~Gki~Wk~~~kG~Y~v~l~n~e~~~~ 112 (131)
T PF10794_consen 41 VNPVTFHVENAEGQPIKDFEVTLMKAADS-DPQPSKEIGISIG--KTDEEGKIIWKNGRKGKYIVFLPNGETQET 112 (131)
T ss_pred cccEEEEEecCCCCcccceEEEEEecccc-CCCCchhhceeec--ccCCCCcEEEecCCcceEEEEEcCCCceeE
Confidence 3445666677777777774 33 343 3457777777777 567899999999999999999888876654
No 27
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=66.57 E-value=4.5 Score=32.04 Aligned_cols=24 Identities=46% Similarity=0.674 Sum_probs=19.8
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|+.
T Consensus 68 E~~G~V~~vG~~v~---------~~~~GdrV~~ 91 (371)
T cd08281 68 EAAGVVVEVGEGVT---------DLEVGDHVVL 91 (371)
T ss_pred cceeEEEEeCCCCC---------cCCCCCEEEE
Confidence 46799999998764 4789999985
No 28
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=66.47 E-value=5 Score=31.45 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=20.5
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|...
T Consensus 63 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 87 (329)
T TIGR02822 63 EVVGEVAGRGADAG---------GFAVGDRVGIA 87 (329)
T ss_pred ceEEEEEEECCCCc---------ccCCCCEEEEc
Confidence 46899999998764 47899999753
No 29
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=66.34 E-value=17 Score=27.79 Aligned_cols=39 Identities=18% Similarity=0.060 Sum_probs=30.1
Q ss_pred eeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeC
Q psy12951 18 PLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGART 62 (111)
Q Consensus 18 PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~ 62 (111)
--|.||=++.. |..+.+|++||... +..| +..++..+..
T Consensus 66 ~~Gs~vrlRLl--e~i~i~g~~IPkgt---~l~G-~~~~~~~Rl~ 104 (200)
T PF12508_consen 66 VDGSRVRLRLL--EDIQIGGILIPKGT---YLYG-VASFQGQRLL 104 (200)
T ss_pred eCCCEEEEEEc--CceEECCEEeCCCC---EEEE-EEeeeccEEE
Confidence 46788888888 45677999999765 7888 8888877763
No 30
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=66.15 E-value=12 Score=28.72 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=19.6
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|+.
T Consensus 60 e~~G~V~~~G~~v~---------~~~~Gd~V~~ 83 (337)
T cd08261 60 ELSGEVVEVGEGVA---------GLKVGDRVVV 83 (337)
T ss_pred ccEEEEEEeCCCCC---------CCCCCCEEEE
Confidence 46799999998653 4789999996
No 31
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=66.11 E-value=4.9 Score=31.28 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=20.7
Q ss_pred cceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 47 EVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 47 k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
....|+|+++|++.. .+++||+|...
T Consensus 59 ~e~~G~V~~vG~~v~---------~~~vGd~V~~~ 84 (347)
T PRK10309 59 HEFSGYVEAVGSGVD---------DLHPGDAVACV 84 (347)
T ss_pred cceEEEEEEeCCCCC---------CCCCCCEEEEC
Confidence 356899999998754 47899999864
No 32
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=65.80 E-value=5.1 Score=31.58 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=20.3
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+..
T Consensus 63 e~~G~V~~vG~~v~---------~~~~GdrV~~~ 87 (369)
T cd08301 63 EAAGIVESVGEGVT---------DLKPGDHVLPV 87 (369)
T ss_pred ccceEEEEeCCCCC---------ccccCCEEEEc
Confidence 45799999998764 58999999863
No 33
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=65.73 E-value=11 Score=28.21 Aligned_cols=27 Identities=41% Similarity=0.446 Sum_probs=20.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccCC
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKF 83 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y 83 (111)
...|+|+++|++.. ..++||+|+.-.+
T Consensus 58 e~~G~V~~vG~~v~---------~~~~Gd~V~~~~~ 84 (312)
T cd08269 58 EGWGRVVALGPGVR---------GLAVGDRVAGLSG 84 (312)
T ss_pred eeEEEEEEECCCCc---------CCCCCCEEEEecC
Confidence 45799999998653 4689999997543
No 34
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=64.66 E-value=9.9 Score=29.41 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=26.8
Q ss_pred CCCeeecceeeeCCEEEccCCCceEE-EECCEEEEEE
Q psy12951 63 PNGEYIKPVVNVGDKVLLPKFGGTKI-EVEGQELHLF 98 (111)
Q Consensus 63 ~~G~~~p~~vk~GD~Vl~~~y~g~~v-~~~g~~y~iv 98 (111)
.+|+.+...++.||+++.+++-|--+ +..++.+.|+
T Consensus 121 ~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~ 157 (209)
T COG2140 121 PEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFL 157 (209)
T ss_pred CCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEE
Confidence 56888888999999999999877444 4455555543
No 35
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=64.48 E-value=5.4 Score=32.12 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=19.9
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|..
T Consensus 67 E~aG~Vv~vG~~v~---------~~~vGdrV~~ 90 (375)
T PLN02178 67 EIVGIATKVGKNVT---------KFKEGDRVGV 90 (375)
T ss_pred eeeEEEEEECCCCC---------ccCCCCEEEE
Confidence 46799999998764 4789999974
No 36
>PLN02827 Alcohol dehydrogenase-like
Probab=64.00 E-value=5.3 Score=32.05 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=20.6
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|...
T Consensus 70 E~~G~V~~vG~~v~---------~~~~GdrV~~~ 94 (378)
T PLN02827 70 EASGIVESIGEGVT---------EFEKGDHVLTV 94 (378)
T ss_pred cceEEEEEcCCCCc---------ccCCCCEEEEe
Confidence 46799999998764 47899999864
No 37
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=63.09 E-value=6.2 Score=30.40 Aligned_cols=24 Identities=25% Similarity=0.141 Sum_probs=19.8
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|..
T Consensus 75 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 98 (345)
T cd08293 75 DGGGVGVVEESKHQ---------KFAVGDIVTS 98 (345)
T ss_pred EeeEEEEEeccCCC---------CCCCCCEEEe
Confidence 46799999998763 4789999986
No 38
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=62.47 E-value=6.1 Score=30.57 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=28.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCc-eEE-EECC--EEEEEEecCcEE
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGG-TKI-EVEG--QELHLFKEADLL 104 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g-~~v-~~~g--~~y~iv~~~DIl 104 (111)
...|+|+++|++. .+++||+|....... ... -..| .+|++++++.++
T Consensus 65 E~~G~V~~vG~~v----------~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~ 115 (308)
T TIGR01202 65 ESVGRVVEAGPDT----------GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVC 115 (308)
T ss_pred eeEEEEEEecCCC----------CCCCCCEEEEeCccccccccccCCcccceEEcCHHHce
Confidence 4689999999863 268999998632100 000 0112 478888776543
No 39
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=62.30 E-value=18 Score=28.49 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=19.6
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+..
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~Vv~~ 84 (365)
T cd05279 60 EGAGIVESIGPGVT---------TLKPGDKVIPL 84 (365)
T ss_pred ceeEEEEEeCCCcc---------cCCCCCEEEEc
Confidence 46799999997653 47899999864
No 40
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=62.02 E-value=7.2 Score=30.10 Aligned_cols=26 Identities=46% Similarity=0.710 Sum_probs=20.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
...|+|+++|++.. .+++||+|+...
T Consensus 61 e~~G~V~~vG~~v~---------~~~~Gd~V~~~~ 86 (339)
T cd08239 61 EPAGVVVAVGPGVT---------HFRVGDRVMVYH 86 (339)
T ss_pred CceEEEEEECCCCc---------cCCCCCEEEECC
Confidence 46799999998764 478999998643
No 41
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=62.00 E-value=6.5 Score=31.22 Aligned_cols=25 Identities=40% Similarity=0.558 Sum_probs=20.5
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|...
T Consensus 62 E~~G~V~~vG~~v~---------~~~~GdrV~~~ 86 (368)
T TIGR02818 62 EGAGIVEAVGEGVT---------SVKVGDHVIPL 86 (368)
T ss_pred ccEEEEEEECCCCc---------cCCCCCEEEEc
Confidence 46799999998764 57899999864
No 42
>PLN02740 Alcohol dehydrogenase-like
Probab=60.94 E-value=6.5 Score=31.38 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=20.2
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|...
T Consensus 72 E~~G~V~~vG~~v~---------~~~vGdrV~~~ 96 (381)
T PLN02740 72 EAAGIVESVGEGVE---------DLKAGDHVIPI 96 (381)
T ss_pred cceEEEEEeCCCCC---------cCCCCCEEEec
Confidence 46799999998654 47899999864
No 43
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=60.84 E-value=6.9 Score=30.95 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=20.3
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|...
T Consensus 63 E~~G~V~~vG~~v~---------~~~vGdrV~~~ 87 (368)
T cd08300 63 EGAGIVESVGEGVT---------SVKPGDHVIPL 87 (368)
T ss_pred ceeEEEEEeCCCCc---------cCCCCCEEEEc
Confidence 46799999998764 47899999864
No 44
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=60.58 E-value=39 Score=24.18 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=21.1
Q ss_pred eCCeEEEEecCC--CCcccceEEeccC--ccccceeeEEEEe
Q psy12951 19 LLDRILVIKDEP--LTKTKGGVLIPEK--AQQEVNNAVVVAV 56 (111)
Q Consensus 19 lgDrVLVk~~~~--e~~T~gGIiLP~~--~~~k~~~G~VvaV 56 (111)
-||+||+.+..- .+-..|-|++=.. ...+...-+|+++
T Consensus 36 ~Gd~vlv~k~~~~~~~~~rGDiVvf~~~~~~~~~~iKRVig~ 77 (163)
T TIGR02227 36 EGDRILVNKFAYGTSDPKRGDIVVFKDPDDNKNIYVKRVIGL 77 (163)
T ss_pred CCCEEEEEEeEcCCCCCCCCcEEEEecCCCCCceeEEEEEec
Confidence 599999998632 2334566665221 1223445566655
No 45
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=60.42 E-value=7.2 Score=30.68 Aligned_cols=24 Identities=46% Similarity=0.530 Sum_probs=20.0
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|..
T Consensus 61 e~~G~V~~vG~~v~---------~~~~GdrV~~ 84 (358)
T TIGR03451 61 EAAGVVEAVGEGVT---------DVAPGDYVVL 84 (358)
T ss_pred ceEEEEEEeCCCCc---------ccCCCCEEEE
Confidence 46899999998764 4789999986
No 46
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=60.16 E-value=7.5 Score=30.74 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=19.8
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|++
T Consensus 70 E~~G~Vv~vG~~v~---------~~~~Gd~V~~ 93 (357)
T PLN02514 70 EVVGEVVEVGSDVS---------KFTVGDIVGV 93 (357)
T ss_pred eeeEEEEEECCCcc---------cccCCCEEEE
Confidence 46799999998764 4789999975
No 47
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=59.65 E-value=18 Score=28.15 Aligned_cols=49 Identities=18% Similarity=0.368 Sum_probs=37.9
Q ss_pred eeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEECCE---EEEEEe
Q psy12951 49 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQ---ELHLFK 99 (111)
Q Consensus 49 ~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~~g~---~y~iv~ 99 (111)
..+.-|=-|.|....||+.. .|+.||.+.++.|.=+.+..-|+ +|++.+
T Consensus 201 eh~~yiL~G~G~~~~~g~~~--~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~yk 252 (260)
T TIGR03214 201 EHGLYVLEGKGVYNLDNNWV--PVEAGDYIWMGAYCPQACYAGGRGEFRYLLYK 252 (260)
T ss_pred eeEEEEEeceEEEEECCEEE--EecCCCEEEECCCCCEEEEecCCCcEEEEEEc
Confidence 35667777888887788765 69999999999999888877542 666664
No 48
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=59.60 E-value=7.5 Score=31.45 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=20.1
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++... .+++||+|...
T Consensus 69 E~~G~V~~vG~~v~~--------~~~vGdrV~~~ 94 (410)
T cd08238 69 EFAGTILKVGKKWQG--------KYKPGQRFVIQ 94 (410)
T ss_pred ccEEEEEEeCCCccC--------CCCCCCEEEEc
Confidence 357999999987531 27899999875
No 49
>PRK10083 putative oxidoreductase; Provisional
Probab=59.35 E-value=8.4 Score=29.60 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=19.9
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+..
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 84 (339)
T PRK10083 60 EFFGVIDAVGEGVD---------AARIGERVAVD 84 (339)
T ss_pred ceEEEEEEECCCCc---------cCCCCCEEEEc
Confidence 46799999998653 47899999853
No 50
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=58.88 E-value=20 Score=28.10 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=18.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
...|+|+++|.+ .+++||+|.+..
T Consensus 65 E~~G~V~~~g~~-----------~~~vGdrV~~~~ 88 (341)
T cd08237 65 EGIGVVVSDPTG-----------TYKVGTKVVMVP 88 (341)
T ss_pred eeEEEEEeeCCC-----------ccCCCCEEEECC
Confidence 468999998752 378999998754
No 51
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=57.73 E-value=11 Score=29.13 Aligned_cols=25 Identities=40% Similarity=0.528 Sum_probs=20.1
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+.+
T Consensus 61 e~~G~V~~~G~~~~---------~~~~Gd~V~~~ 85 (345)
T cd08260 61 EFAGVVVEVGEDVS---------RWRVGDRVTVP 85 (345)
T ss_pred ceeEEEEEECCCCc---------cCCCCCEEEEC
Confidence 46799999998653 47999999863
No 52
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=56.70 E-value=9.1 Score=30.24 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=20.1
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+..
T Consensus 62 e~~G~V~~vG~~v~---------~~~~GdrV~~~ 86 (365)
T cd08277 62 EGAGIVESVGEGVT---------NLKPGDKVIPL 86 (365)
T ss_pred ceeEEEEeeCCCCc---------cCCCCCEEEEC
Confidence 46899999998764 47899999864
No 53
>smart00696 DM9 Repeats found in Drosophila proteins.
Probab=56.52 E-value=29 Score=22.02 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=39.0
Q ss_pred eccCcc--ccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEEC
Q psy12951 40 IPEKAQ--QEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVE 91 (111)
Q Consensus 40 LP~~~~--~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~~ 91 (111)
+|..|- .....|..+-||-+.. +|.++|-.+-+.....|=.|.|.++.++
T Consensus 12 vP~~AV~~G~~~~G~~lYvgR~~~--~g~~~pGKv~p~~~~~yi~~~g~E~~~~ 63 (71)
T smart00696 12 IPPNAVVGGTDSDGEPLYVGRAYY--EGSLLPGKVVPSHGCAYIPYGGQEVRLD 63 (71)
T ss_pred CCCCcEEcccCCCCCEEEEEEEEE--CCcEEEEEEEccCCEEEEEECCEEEEcC
Confidence 476653 2345678888987766 7788888899999999999999999874
No 54
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=55.87 E-value=9 Score=29.78 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=19.6
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|+.
T Consensus 71 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 94 (351)
T cd08233 71 EFSGVVVEVGSGVT---------GFKVGDRVVV 94 (351)
T ss_pred cceEEEEEeCCCCC---------CCCCCCEEEE
Confidence 46799999998653 4789999986
No 55
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=55.11 E-value=11 Score=28.86 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=19.8
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|+.
T Consensus 61 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 84 (347)
T cd05278 61 EFVGEVVEVGSDVK---------RLKPGDRVSV 84 (347)
T ss_pred ceEEEEEEECCCcc---------ccCCCCEEEe
Confidence 46799999998654 4789999986
No 56
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=54.84 E-value=11 Score=29.21 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=20.2
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+..
T Consensus 62 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 86 (340)
T TIGR00692 62 EVAGEVVGIGPGVE---------GIKVGDYVSVE 86 (340)
T ss_pred ceEEEEEEECCCCC---------cCCCCCEEEEC
Confidence 46899999998653 47899999874
No 57
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=54.69 E-value=11 Score=28.77 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=20.1
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+.-
T Consensus 65 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 89 (336)
T TIGR02817 65 DAAGVVVAVGDEVT---------LFKPGDEVWYA 89 (336)
T ss_pred eeEEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 46899999998653 47899999863
No 58
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=54.49 E-value=11 Score=28.44 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=20.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
...|+|+++|++.. .+++||+|+...
T Consensus 65 e~~G~V~~~G~~v~---------~~~~Gd~V~~~~ 90 (324)
T cd08292 65 EAVGVVDAVGEGVK---------GLQVGQRVAVAP 90 (324)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEecc
Confidence 56899999998653 478999998754
No 59
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=54.24 E-value=10 Score=28.85 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=20.0
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+..
T Consensus 61 e~~G~v~~vG~~v~---------~~~~Gd~V~~~ 85 (325)
T cd08264 61 EFAGVVEEVGDHVK---------GVKKGDRVVVY 85 (325)
T ss_pred ceeEEEEEECCCCC---------CCCCCCEEEEC
Confidence 46799999998764 47899999853
No 60
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=53.78 E-value=33 Score=24.11 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=24.0
Q ss_pred CCCeeecceeeeCCEEEccC-CCceEEEECC-EEEEEEe
Q psy12951 63 PNGEYIKPVVNVGDKVLLPK-FGGTKIEVEG-QELHLFK 99 (111)
Q Consensus 63 ~~G~~~p~~vk~GD~Vl~~~-y~g~~v~~~g-~~y~iv~ 99 (111)
++|+ |..+++||.++|+. |.|..-..+. .++++++
T Consensus 79 d~Ge--~v~~~aGD~~~~~~G~~g~W~V~EtvrK~Yv~~ 115 (116)
T COG3450 79 DGGE--PVEVRAGDSFVFPAGFKGTWEVLETVRKHYVIR 115 (116)
T ss_pred CCCe--EEEEcCCCEEEECCCCeEEEEEeeeeEEEEEEe
Confidence 4554 55899999999998 8886655544 3444443
No 61
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=53.45 E-value=20 Score=28.32 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=30.8
Q ss_pred eeeeCCEEEc-cCCCceEEEECCEEEEEEecCcEEEEee
Q psy12951 71 VVNVGDKVLL-PKFGGTKIEVEGQELHLFKEADLLAVIE 108 (111)
Q Consensus 71 ~vk~GD~Vl~-~~y~g~~v~~~g~~y~iv~~~DIlavi~ 108 (111)
.+++||+|.+ +.+....+.+-+. |++++...|.+.|.
T Consensus 305 ~~~vGd~v~~ip~H~c~t~~~~~~-~~vv~~~~v~~~w~ 342 (345)
T cd07376 305 DLPIGDRVFLVPNHACETVALHDE-LYVVEGGRVAATWP 342 (345)
T ss_pred CCCCCCEEEEeCCccccchhcCCE-EEEEECCEEEEEEe
Confidence 4789999999 7788888877655 99999998888774
No 62
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=53.01 E-value=11 Score=29.01 Aligned_cols=24 Identities=33% Similarity=0.309 Sum_probs=19.3
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|+.
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (345)
T cd08287 60 EFVGVVEEVGSEVT---------SVKPGDFVIA 83 (345)
T ss_pred ceEEEEEEeCCCCC---------ccCCCCEEEe
Confidence 46799999997653 4789999985
No 63
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=52.31 E-value=12 Score=28.73 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=19.9
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++... .+++||+|...
T Consensus 67 e~~G~V~~vG~~v~~--------~~~vGd~V~~~ 92 (324)
T cd08291 67 EGSGTVVAAGGGPLA--------QSLIGKRVAFL 92 (324)
T ss_pred ceEEEEEEECCCccc--------cCCCCCEEEec
Confidence 467999999987531 26899999863
No 64
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=52.06 E-value=12 Score=28.64 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=19.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. ..++||+|+.
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (344)
T cd08284 60 EFVGEVVEVGPEVR---------TLKVGDRVVS 83 (344)
T ss_pred ceEEEEEeeCCCcc---------ccCCCCEEEE
Confidence 46799999998654 5789999986
No 65
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=51.32 E-value=19 Score=26.73 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=20.4
Q ss_pred cceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 47 EVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 47 k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
....|+|+++|++.. ..++||+|+..
T Consensus 26 ~e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 51 (277)
T cd08255 26 YSSVGRVVEVGSGVT---------GFKPGDRVFCF 51 (277)
T ss_pred cceeEEEEEeCCCCC---------CCCCCCEEEec
Confidence 467799999997643 36899999875
No 66
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=51.30 E-value=12 Score=29.50 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=19.4
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|..
T Consensus 62 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 85 (365)
T cd08278 62 EGAGVVEAVGSAVT---------GLKPGDHVVL 85 (365)
T ss_pred ceeEEEEEeCCCcc---------cCCCCCEEEE
Confidence 46799999998653 4789999983
No 67
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=50.82 E-value=13 Score=28.60 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=19.8
Q ss_pred ceeeEEEEecCceeCCCCeeecce-eeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPV-VNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~-vk~GD~Vl~~ 81 (111)
...|+|+++|++.. . +++||+|+.-
T Consensus 70 e~~G~V~~vG~~v~---------~~~~~Gd~V~~~ 95 (341)
T cd08262 70 EFCGEVVDYGPGTE---------RKLKVGTRVTSL 95 (341)
T ss_pred ceeEEEEEeCCCCc---------CCCCCCCEEEec
Confidence 46799999998653 3 7899999964
No 68
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=50.56 E-value=9.9 Score=28.72 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=21.1
Q ss_pred ceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 36 GGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 36 gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
.|+-||..+.+....|.-|. ..++++||.|+|..
T Consensus 106 ~Gi~LPr~t~~Q~~~g~~V~-------------~~~lqpGDLVfF~~ 139 (190)
T PRK10838 106 FGLELPRSTYEQQEMGKSVS-------------RSKLRTGDLVLFRA 139 (190)
T ss_pred CCCCCCCCHHHHHhcCcCcc-------------cCCCCCCcEEEECC
Confidence 57888887654333332111 12689999999974
No 69
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=50.51 E-value=14 Score=26.77 Aligned_cols=26 Identities=46% Similarity=0.710 Sum_probs=20.5
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
...|+|+++|++.. .+++||+|+...
T Consensus 36 e~~G~v~~~G~~v~---------~~~~Gd~V~~~~ 61 (271)
T cd05188 36 EGAGVVVEVGPGVT---------GVKVGDRVVVLP 61 (271)
T ss_pred ccEEEEEEECCCCC---------cCCCCCEEEEcC
Confidence 46799999997543 478999999754
No 70
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=50.50 E-value=13 Score=28.46 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=19.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+.-
T Consensus 64 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 88 (340)
T cd05284 64 ENAGWVEEVGSGVD---------GLKEGDPVVVH 88 (340)
T ss_pred ceeEEEEEeCCCCC---------cCcCCCEEEEc
Confidence 45799999997653 47899999853
No 71
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=50.18 E-value=14 Score=28.62 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=20.3
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+..
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 84 (351)
T cd08285 60 EAVGVVEEVGSEVK---------DFKPGDRVIVP 84 (351)
T ss_pred ceEEEEEEecCCcC---------ccCCCCEEEEc
Confidence 56799999998753 47899999964
No 72
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=50.14 E-value=14 Score=28.36 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=19.6
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. ..++||+|+.
T Consensus 60 ~~~G~V~~~G~~v~---------~~~~Gd~V~~ 83 (343)
T cd08235 60 EIAGEIVEVGDGVT---------GFKVGDRVFV 83 (343)
T ss_pred ceEEEEEeeCCCCC---------CCCCCCEEEE
Confidence 56899999998653 4789999995
No 73
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=49.42 E-value=15 Score=28.37 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=19.9
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+..
T Consensus 61 e~~G~V~~~G~~v~---------~~~~Gd~V~~~ 85 (345)
T cd08286 61 EGVGVVEEVGSAVT---------NFKVGDRVLIS 85 (345)
T ss_pred cceEEEEEeccCcc---------ccCCCCEEEEC
Confidence 46799999998653 47899999863
No 74
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=48.67 E-value=16 Score=28.11 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=20.2
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+..
T Consensus 59 ~~~G~V~~~g~~v~---------~~~~Gd~V~~~ 83 (343)
T cd08236 59 EFSGTVEEVGSGVD---------DLAVGDRVAVN 83 (343)
T ss_pred ceEEEEEEECCCCC---------cCCCCCEEEEc
Confidence 57899999998653 57899999863
No 75
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=48.26 E-value=14 Score=28.30 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=19.3
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. ..++||+|+.
T Consensus 60 e~~G~v~~vG~~v~---------~~~~Gd~V~~ 83 (339)
T cd08232 60 EVSGVVEAVGPGVT---------GLAPGQRVAV 83 (339)
T ss_pred cceEEEEeeCCCCC---------cCCCCCEEEE
Confidence 35799999998653 4789999986
No 76
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=48.23 E-value=15 Score=24.61 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=15.5
Q ss_pred eeeeCCEEEccCCCceEEEECCEEEEEE
Q psy12951 71 VVNVGDKVLLPKFGGTKIEVEGQELHLF 98 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~g~~v~~~g~~y~iv 98 (111)
.+|+||+|+.-+. -+|+.|+++
T Consensus 76 ~Lk~GD~V~ll~~------~~gQ~yiVl 97 (100)
T PF10844_consen 76 GLKVGDKVLLLRV------QGGQKYIVL 97 (100)
T ss_pred CCcCCCEEEEEEe------cCCCEEEEE
Confidence 7899999997652 245666665
No 77
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=48.08 E-value=15 Score=29.36 Aligned_cols=25 Identities=44% Similarity=0.696 Sum_probs=20.0
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+..
T Consensus 61 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 85 (386)
T cd08283 61 EFMGVVEEVGPEVR---------NLKVGDRVVVP 85 (386)
T ss_pred cceEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 46899999998653 47899999864
No 78
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=47.49 E-value=16 Score=28.75 Aligned_cols=24 Identities=46% Similarity=0.666 Sum_probs=19.6
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. ..++||+|+.
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (363)
T cd08279 60 EGAGVVEEVGPGVT---------GVKPGDHVVL 83 (363)
T ss_pred cceEEEEEeCCCcc---------ccCCCCEEEE
Confidence 46799999998653 4789999987
No 79
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=47.47 E-value=15 Score=28.12 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=20.1
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+..
T Consensus 62 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 86 (306)
T cd08258 62 EFSGTIVEVGPDVE---------GWKVGDRVVSE 86 (306)
T ss_pred ceEEEEEEECCCcC---------cCCCCCEEEEc
Confidence 46799999998654 47899999874
No 80
>PLN02702 L-idonate 5-dehydrogenase
Probab=47.02 E-value=15 Score=28.76 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=19.4
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|+.
T Consensus 80 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 103 (364)
T PLN02702 80 ECAGIIEEVGSEVK---------HLVVGDRVAL 103 (364)
T ss_pred ceeEEEEEECCCCC---------CCCCCCEEEE
Confidence 46799999998653 4789999986
No 81
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=46.67 E-value=37 Score=26.07 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=14.7
Q ss_pred CCCCeeecc-eeeeCCEEEccCCCc
Q psy12951 62 TPNGEYIKP-VVNVGDKVLLPKFGG 85 (111)
Q Consensus 62 ~~~G~~~p~-~vk~GD~Vl~~~y~g 85 (111)
..+|..++| ++++||+|+--+-.|
T Consensus 21 ~~~G~~k~m~~L~iGD~Vla~d~~G 45 (217)
T PF01079_consen 21 LEDGGRKRMSDLKIGDRVLAVDSDG 45 (217)
T ss_dssp BTTS-EEEGGG--TT-EEEEE-TTS
T ss_pred eCCCCEeEHHHCCCCCEEEEecCCC
Confidence 467777777 999999999988555
No 82
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=46.02 E-value=17 Score=28.34 Aligned_cols=30 Identities=37% Similarity=0.488 Sum_probs=20.6
Q ss_pred ceeeEEEEecCceeC-CCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGART-PNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~-~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++... ..| ..+++||+|+..
T Consensus 61 e~~G~V~~vG~~v~~~~~~----~~~~~Gd~V~~~ 91 (361)
T cd08231 61 EGVGRVVALGGGVTTDVAG----EPLKVGDRVTWS 91 (361)
T ss_pred CCceEEEEeCCCccccccC----CccCCCCEEEEc
Confidence 467999999987541 001 137899999864
No 83
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=45.99 E-value=17 Score=28.15 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=19.5
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|++
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (337)
T cd05283 60 EIVGIVVAVGSKVT---------KFKVGDRVGV 83 (337)
T ss_pred ceeeEEEEECCCCc---------ccCCCCEEEE
Confidence 46799999998754 5789999974
No 84
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=45.96 E-value=18 Score=27.30 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=19.1
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|.|+++|++.. .+++||+|+-
T Consensus 65 e~~G~v~~vG~~v~---------~~~~Gd~V~~ 88 (334)
T PTZ00354 65 EVAGYVEDVGSDVK---------RFKEGDRVMA 88 (334)
T ss_pred eeEEEEEEeCCCCC---------CCCCCCEEEE
Confidence 46899999997653 4789999975
No 85
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=45.94 E-value=18 Score=29.02 Aligned_cols=54 Identities=26% Similarity=0.217 Sum_probs=34.5
Q ss_pred cceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCC--ce--------------------EE---EECC--EEEEEEe
Q psy12951 47 EVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFG--GT--------------------KI---EVEG--QELHLFK 99 (111)
Q Consensus 47 k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~--g~--------------------~v---~~~g--~~y~iv~ 99 (111)
-...|+|+++| ... ..++||+|..+..- |. .. .++| -+|+.++
T Consensus 61 HE~~G~V~evG-~~~---------~~~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp 130 (350)
T COG1063 61 HEFVGEVVEVG-VVR---------GFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVP 130 (350)
T ss_pred ccceEEEEEec-ccc---------CCCCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEec
Confidence 35679999999 433 46788888876421 11 10 0234 4888888
Q ss_pred cCcEEEEeecC
Q psy12951 100 EADLLAVIEKD 110 (111)
Q Consensus 100 ~~DIlavi~~~ 110 (111)
.+..+.++.++
T Consensus 131 ~~~~~~~~pd~ 141 (350)
T COG1063 131 ADFNLAKLPDG 141 (350)
T ss_pred cccCeecCCCC
Confidence 87777776544
No 86
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=45.46 E-value=55 Score=22.03 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=24.2
Q ss_pred eeeeCCEEEccCCC--c--eEEEE-CCEEEEEEecCcEE
Q psy12951 71 VVNVGDKVLLPKFG--G--TKIEV-EGQELHLFKEADLL 104 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~--g--~~v~~-~g~~y~iv~~~DIl 104 (111)
.+++|+.|.|..-+ | .+++. ||..|.++...+++
T Consensus 2 ~I~vGs~VRY~~TGT~G~V~diK~ed~~~wv~LD~t~L~ 40 (91)
T PF09871_consen 2 PIKVGSYVRYINTGTVGKVVDIKEEDGETWVLLDSTDLY 40 (91)
T ss_pred cceeCCEEEECCCCeEEEEEEEEEeCCCeEEEEccCCce
Confidence 47899999998855 5 44444 67788888666654
No 87
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=45.30 E-value=18 Score=27.86 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=19.8
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|...
T Consensus 64 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 88 (341)
T PRK05396 64 EFVGEVVEVGSEVT---------GFKVGDRVSGE 88 (341)
T ss_pred eeEEEEEEeCCCCC---------cCCCCCEEEEC
Confidence 36799999998654 47899999864
No 88
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=45.26 E-value=45 Score=20.46 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=14.3
Q ss_pred EccCCCceEEEECCEEEEEEecCcEEEEe
Q psy12951 79 LLPKFGGTKIEVEGQELHLFKEADLLAVI 107 (111)
Q Consensus 79 l~~~y~g~~v~~~g~~y~iv~~~DIlavi 107 (111)
+..+.+|+=.++.-++--.++..++|+.+
T Consensus 42 I~a~~~G~V~~i~v~~G~~V~~G~~l~~i 70 (71)
T PRK05889 42 VLAEVAGTVSKVSVSVGDVIQAGDLIAVI 70 (71)
T ss_pred EeCCCCEEEEEEEeCCCCEECCCCEEEEE
Confidence 34556664333322222245667777765
No 89
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=44.75 E-value=19 Score=27.56 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=20.6
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
...|+|+++|++.. ..++||+|+...
T Consensus 70 e~~G~V~~vG~~v~---------~~~~Gd~V~~~~ 95 (341)
T cd08290 70 EGVGEVVKVGSGVK---------SLKPGDWVIPLR 95 (341)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEecC
Confidence 46899999998653 478999999654
No 90
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=44.62 E-value=19 Score=28.58 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=19.4
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|+.
T Consensus 60 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (375)
T cd08282 60 EAMGEVEEVGSAVE---------SLKVGDRVVV 83 (375)
T ss_pred ccEEEEEEeCCCCC---------cCCCCCEEEE
Confidence 46799999998643 4789999986
No 91
>KOG0023|consensus
Probab=44.61 E-value=18 Score=30.19 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=19.0
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+.||+... ..|+||+|=.
T Consensus 72 EiaG~VvkvGs~V~---------~~kiGD~vGV 95 (360)
T KOG0023|consen 72 EIAGVVVKVGSNVT---------GFKIGDRVGV 95 (360)
T ss_pred eeeEEEEEECCCcc---------cccccCeeee
Confidence 57899999999754 4788888754
No 92
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=44.12 E-value=20 Score=27.24 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=19.8
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|.|+++|++.. .+++||+|++-
T Consensus 64 e~~G~v~~vG~~v~---------~~~~Gd~V~~~ 88 (327)
T PRK10754 64 EAAGVVSKVGSGVK---------HIKVGDRVVYA 88 (327)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEEC
Confidence 46799999998654 46899999863
No 93
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=43.67 E-value=20 Score=27.05 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=19.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+.+|++.. .+++||+|..-
T Consensus 61 e~~G~v~~~G~~v~---------~~~~Gd~V~~~ 85 (332)
T cd08259 61 EIVGTVEEVGEGVE---------RFKPGDRVILY 85 (332)
T ss_pred cceEEEEEECCCCc---------cCCCCCEEEEC
Confidence 46799999998653 47899999853
No 94
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=43.59 E-value=19 Score=25.99 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=20.3
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
...|+|+++|++.. .+++||+|+...
T Consensus 30 e~~G~v~~~G~~~~---------~~~~Gd~V~~~~ 55 (288)
T smart00829 30 ECAGVVTRVGPGVT---------GLAVGDRVMGLA 55 (288)
T ss_pred eeEEEEEeeCCCCc---------CCCCCCEEEEEc
Confidence 46799999997653 478999998743
No 95
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=43.26 E-value=19 Score=27.58 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=19.8
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|.|+++|++.. .+++||+|+..
T Consensus 84 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 108 (350)
T cd08274 84 DIVGRVVAVGEGVD---------TARIGERVLVD 108 (350)
T ss_pred cceEEEEEeCCCCC---------CCCCCCEEEEe
Confidence 35799999998653 47899999863
No 96
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=43.16 E-value=23 Score=26.95 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=19.5
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|++.
T Consensus 60 e~~G~v~~~g~~~~---------~~~~Gd~V~~~ 84 (330)
T cd08245 60 EIVGEVVEVGAGVE---------GRKVGDRVGVG 84 (330)
T ss_pred cceEEEEEECCCCc---------ccccCCEEEEc
Confidence 46799999997543 47899999853
No 97
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=42.93 E-value=47 Score=25.41 Aligned_cols=24 Identities=50% Similarity=0.735 Sum_probs=19.0
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. ..++||+|+.
T Consensus 63 e~~G~V~~vG~~~~---------~~~~Gd~V~~ 86 (341)
T cd08297 63 EGAGVVVAVGPGVS---------GLKVGDRVGV 86 (341)
T ss_pred ccceEEEEeCCCCC---------CCCCCCEEEE
Confidence 46799999997653 4789999985
No 98
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.59 E-value=30 Score=27.86 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=19.2
Q ss_pred eeeeCCEEEccCC----CceEEEECCEEEEEEe
Q psy12951 71 VVNVGDKVLLPKF----GGTKIEVEGQELHLFK 99 (111)
Q Consensus 71 ~vk~GD~Vl~~~y----~g~~v~~~g~~y~iv~ 99 (111)
.+++||+|...+- .|++++.. ..|+++|
T Consensus 261 ~~~pGd~vvv~dg~mki~G~d~kV~-t~yiIcr 292 (293)
T COG4079 261 EVEPGDRVVVKDGVMKIDGKDLKVI-TGYIICR 292 (293)
T ss_pred ccCCCCEEEEecCceEeccccceee-eeeEEec
Confidence 5899999998873 25555544 5677765
No 99
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=42.59 E-value=22 Score=28.27 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=20.0
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+..
T Consensus 88 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 112 (393)
T cd08246 88 DASGIVWAVGEGVK---------NWKVGDEVVVH 112 (393)
T ss_pred ceEEEEEEeCCCCC---------cCCCCCEEEEe
Confidence 36799999998753 47899999864
No 100
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=42.44 E-value=21 Score=27.59 Aligned_cols=24 Identities=42% Similarity=0.671 Sum_probs=19.3
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|+... .+++||+|+.
T Consensus 61 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 84 (343)
T cd05285 61 ESAGTVVAVGSGVT---------HLKVGDRVAI 84 (343)
T ss_pred ceeEEEEeeCCCCC---------CCCCCCEEEE
Confidence 56899999997543 4789999985
No 101
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=42.41 E-value=58 Score=21.30 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=16.6
Q ss_pred eeeeCCEEEccC-CCceEEEECCEEE
Q psy12951 71 VVNVGDKVLLPK-FGGTKIEVEGQEL 95 (111)
Q Consensus 71 ~vk~GD~Vl~~~-y~g~~v~~~g~~y 95 (111)
.+++||.|+... .-|+=++++++..
T Consensus 37 ~L~~Gd~VvT~gGi~G~V~~i~d~~v 62 (84)
T TIGR00739 37 SLKKGDKVLTIGGIIGTVTKIAENTI 62 (84)
T ss_pred hCCCCCEEEECCCeEEEEEEEeCCEE
Confidence 677888887765 5566666665433
No 102
>PRK11479 hypothetical protein; Provisional
Probab=42.16 E-value=8.4 Score=30.86 Aligned_cols=38 Identities=8% Similarity=0.047 Sum_probs=25.6
Q ss_pred CcccceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 32 TKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 32 ~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
+.++-|+-||.+++.....|+=|+.. ++++||.|+|..
T Consensus 38 ~~~~~~~~~pr~s~~q~~~g~~Vs~~-------------~LqpGDLVFfst 75 (274)
T PRK11479 38 EAKTWAVKFQHQSSFTEQGIKEITAP-------------DLKPGDLLFSSS 75 (274)
T ss_pred cchhcceecCcccHHHHhCCcccChh-------------hCCCCCEEEEec
Confidence 34567999999876554444433332 689999999853
No 103
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=41.76 E-value=21 Score=26.46 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=19.0
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|+.
T Consensus 64 e~~G~v~~~G~~~~---------~~~~Gd~V~~ 87 (328)
T cd08268 64 EAAGVVEAVGAGVT---------GFAVGDRVSV 87 (328)
T ss_pred ceEEEEEeeCCCCC---------cCCCCCEEEe
Confidence 46799999997643 4789999985
No 104
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=41.58 E-value=21 Score=27.69 Aligned_cols=25 Identities=56% Similarity=0.610 Sum_probs=19.6
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+.-
T Consensus 73 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 97 (350)
T cd08240 73 EIVGEVVAVGPDAA---------DVKVGDKVLVY 97 (350)
T ss_pred ceeEEEEeeCCCCC---------CCCCCCEEEEC
Confidence 46799999998653 47899999753
No 105
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=41.57 E-value=22 Score=26.66 Aligned_cols=25 Identities=40% Similarity=0.593 Sum_probs=19.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+.+|++.. .+++||+|...
T Consensus 64 e~~G~v~~~G~~~~---------~~~~Gd~V~~~ 88 (342)
T cd08266 64 DGAGVVEAVGPGVT---------NVKPGQRVVIY 88 (342)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 46799999997653 47899999864
No 106
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=40.81 E-value=22 Score=28.50 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=19.4
Q ss_pred eeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 49 NNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 49 ~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
..|+|+++|++.. .+++||+|+..
T Consensus 85 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 108 (398)
T TIGR01751 85 ASGVVWRVGPGVT---------RWKVGDEVVAS 108 (398)
T ss_pred eEEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 5799999998754 47899999864
No 107
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=40.68 E-value=23 Score=27.04 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=19.4
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|+.
T Consensus 60 e~~G~V~~~G~~v~---------~~~~Gd~V~~ 83 (338)
T PRK09422 60 EGIGIVKEVGPGVT---------SLKVGDRVSI 83 (338)
T ss_pred ccceEEEEECCCCc---------cCCCCCEEEE
Confidence 46799999998653 4789999985
No 108
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=40.54 E-value=23 Score=25.47 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=19.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|.|+++|++.. .+++||+|+.-
T Consensus 34 e~~G~v~~~g~~~~---------~~~~Gd~V~~~ 58 (293)
T cd05195 34 ECSGIVTRVGSGVT---------GLKVGDRVMGL 58 (293)
T ss_pred eeeEEEEeecCCcc---------CCCCCCEEEEE
Confidence 56799999997643 47899999864
No 109
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=40.01 E-value=19 Score=24.95 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=13.3
Q ss_pred eeeeCCEEEccCCCc
Q psy12951 71 VVNVGDKVLLPKFGG 85 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~g 85 (111)
.+++||+++|..+.+
T Consensus 31 ~ikvGD~I~f~~~~~ 45 (109)
T cd06555 31 QIKVGDKILFNDLDT 45 (109)
T ss_pred cCCCCCEEEEEEcCC
Confidence 689999999999864
No 110
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=39.71 E-value=68 Score=27.18 Aligned_cols=38 Identities=11% Similarity=-0.019 Sum_probs=27.5
Q ss_pred eeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCcee
Q psy12951 18 PLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGAR 61 (111)
Q Consensus 18 PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~ 61 (111)
--|.||=++.. |..+.+|.+||... +..|. ..++..+.
T Consensus 269 ~~G~~vrlRLl--e~~~v~~~~ipkgt---~l~g~-~~~~g~R~ 306 (410)
T TIGR03779 269 VDGSAVKLRLL--EPIQAGDLVIPKGT---VLYGT-AKIQGERL 306 (410)
T ss_pred ecCCEEEEEEc--CceeeCCEEecCCC---EEEEE-eeeccceE
Confidence 35788888888 55778899999765 66777 66665554
No 111
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=39.54 E-value=26 Score=26.64 Aligned_cols=24 Identities=42% Similarity=0.501 Sum_probs=19.4
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|+.
T Consensus 59 ~~~G~v~~vG~~v~---------~~~~Gd~V~~ 82 (334)
T cd08234 59 EFAGVVVAVGSKVT---------GFKVGDRVAV 82 (334)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEE
Confidence 57899999997653 4689999986
No 112
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=39.32 E-value=60 Score=25.13 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=19.0
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. +| .+++||+|+.
T Consensus 69 e~~G~v~~vG~~v~--~~-----~~~~Gd~V~~ 94 (350)
T cd08256 69 EFVGRVVELGEGAE--ER-----GVKVGDRVIS 94 (350)
T ss_pred ceeEEEEEeCCCcc--cC-----CCCCCCEEEE
Confidence 35799999997642 11 3689999985
No 113
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=39.16 E-value=25 Score=26.59 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=19.0
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|+... .+++||+|+.
T Consensus 63 ~~~G~v~~~G~~v~---------~~~~Gd~V~~ 86 (338)
T cd08254 63 EIAGTVVEVGAGVT---------NFKVGDRVAV 86 (338)
T ss_pred cccEEEEEECCCCc---------cCCCCCEEEE
Confidence 45799999997654 4689999985
No 114
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=39.10 E-value=25 Score=28.00 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=19.9
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|...
T Consensus 67 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 91 (373)
T cd08299 67 EAAGIVESVGEGVT---------TVKPGDKVIPL 91 (373)
T ss_pred cceEEEEEeCCCCc---------cCCCCCEEEEC
Confidence 46799999998654 47899999854
No 115
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=39.01 E-value=55 Score=24.85 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=18.9
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|+.
T Consensus 65 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 88 (329)
T cd08298 65 EIVGRVEAVGPGVT---------RFSVGDRVGV 88 (329)
T ss_pred cccEEEEEECCCCC---------CCcCCCEEEE
Confidence 46799999997653 4789999975
No 116
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=38.98 E-value=28 Score=27.20 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=18.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+ +||+|..+
T Consensus 60 E~~G~V~~vG~~v~---------~~-~GdrV~~~ 83 (349)
T TIGR03201 60 EISGRVIQAGAGAA---------SW-IGKAVIVP 83 (349)
T ss_pred cceEEEEEeCCCcC---------CC-CCCEEEEC
Confidence 46799999998753 24 89999864
No 117
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=38.65 E-value=28 Score=25.97 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=19.5
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|..-
T Consensus 58 e~~G~v~~~G~~v~---------~~~~Gd~V~~~ 82 (305)
T cd08270 58 DAAGVVERAAADGS---------GPAVGARVVGL 82 (305)
T ss_pred eeEEEEEEeCCCCC---------CCCCCCEEEEe
Confidence 56899999997643 46899999853
No 118
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=38.46 E-value=26 Score=25.73 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=19.4
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|.|+++|++.. ..++||+|+..
T Consensus 44 e~~G~v~~~G~~v~---------~~~~Gd~V~~~ 68 (303)
T cd08251 44 EASGVVRAVGPHVT---------RLAVGDEVIAG 68 (303)
T ss_pred eeeEEEEEECCCCC---------CCCCCCEEEEe
Confidence 46799999997653 46899999853
No 119
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=38.26 E-value=28 Score=26.11 Aligned_cols=26 Identities=38% Similarity=0.446 Sum_probs=20.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
...|.|+++|++.. ..++||+|+...
T Consensus 63 e~~G~v~~~G~~v~---------~~~~Gd~V~~~~ 88 (323)
T cd05282 63 EGVGVVVEVGSGVS---------GLLVGQRVLPLG 88 (323)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEEeC
Confidence 46899999998754 468999999754
No 120
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=38.08 E-value=28 Score=26.14 Aligned_cols=26 Identities=35% Similarity=0.449 Sum_probs=20.2
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
...|+|+++|++.. .+++||+|+..-
T Consensus 66 e~~G~v~~~G~~v~---------~~~~Gd~V~~~~ 91 (324)
T cd08244 66 EVAGVVDAVGPGVD---------PAWLGRRVVAHT 91 (324)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEEcc
Confidence 46799999997653 478999998753
No 121
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=37.81 E-value=26 Score=26.83 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=19.6
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|...
T Consensus 80 e~~G~v~~vG~~v~---------~~~~Gd~V~~~ 104 (350)
T cd08248 80 DCSGVVVDIGSGVK---------SFEIGDEVWGA 104 (350)
T ss_pred eeEEEEEecCCCcc---------cCCCCCEEEEe
Confidence 46799999997653 47899999863
No 122
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=37.78 E-value=25 Score=27.79 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=18.6
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|.+||++.. .+++||+|..
T Consensus 81 ~~~G~v~~vg~~v~---------~~~~Gd~V~~ 104 (348)
T PLN03154 81 EGFGVSKVVDSDDP---------NFKPGDLISG 104 (348)
T ss_pred EeeEEEEEEecCCC---------CCCCCCEEEe
Confidence 34689999998653 4789999973
No 123
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=37.49 E-value=28 Score=26.36 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=19.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|.|+++|++.. .+++||+|.--
T Consensus 64 e~~G~v~~vG~~v~---------~~~~Gd~V~~~ 88 (331)
T cd08273 64 DLVGRVDALGSGVT---------GFEVGDRVAAL 88 (331)
T ss_pred ceEEEEEEeCCCCc---------cCCCCCEEEEe
Confidence 45799999997653 47899999864
No 124
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=37.29 E-value=26 Score=27.88 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=19.1
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|+.
T Consensus 94 e~~G~V~~vG~~v~---------~~~~Gd~V~~ 117 (384)
T cd08265 94 EFSGVVEKTGKNVK---------NFEKGDPVTA 117 (384)
T ss_pred ceEEEEEEECCCCC---------CCCCCCEEEE
Confidence 45799999997643 4789999985
No 125
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=36.55 E-value=30 Score=26.65 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=19.3
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. .+++||+|+.
T Consensus 61 e~~G~v~~vG~~v~---------~~~~Gd~V~~ 84 (333)
T cd08296 61 EVVGRIDAVGEGVS---------RWKVGDRVGV 84 (333)
T ss_pred ceeEEEEEECCCCc---------cCCCCCEEEe
Confidence 46799999997653 4789999985
No 126
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=35.15 E-value=34 Score=26.49 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=19.6
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|.|+++|++.. .+++||+|+--
T Consensus 61 e~~G~v~~vG~~v~---------~~~~Gd~V~~~ 85 (339)
T cd08249 61 DFAGTVVEVGSGVT---------RFKVGDRVAGF 85 (339)
T ss_pred eeeEEEEEeCCCcC---------cCCCCCEEEEE
Confidence 46799999998653 46899999853
No 127
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=35.14 E-value=30 Score=27.09 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=19.8
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++.. ..+ ..++||+|+.
T Consensus 60 e~~G~v~~vG~~~~-~~~-----~~~~Gd~V~~ 86 (367)
T cd08263 60 EISGEVVEVGPNVE-NPY-----GLSVGDRVVG 86 (367)
T ss_pred ccceEEEEeCCCCC-CCC-----cCCCCCEEEE
Confidence 46799999998653 111 3789999986
No 128
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=34.82 E-value=31 Score=25.42 Aligned_cols=26 Identities=42% Similarity=0.580 Sum_probs=19.8
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
...|.|+++|+... .+++||+|+...
T Consensus 64 e~~G~v~~~g~~~~---------~~~~Gd~v~~~~ 89 (325)
T cd08253 64 DGAGVVEAVGEGVD---------GLKVGDRVWLTN 89 (325)
T ss_pred ceEEEEEeeCCCCC---------CCCCCCEEEEec
Confidence 45799999997543 478999998653
No 129
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=34.68 E-value=34 Score=25.41 Aligned_cols=25 Identities=40% Similarity=0.445 Sum_probs=19.8
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|.|+++|++.. .+++||+|+..
T Consensus 65 e~~G~v~~~G~~v~---------~~~~Gd~V~~~ 89 (319)
T cd08267 65 DFAGEVVAVGSGVT---------RFKVGDEVFGR 89 (319)
T ss_pred eeeEEEEEeCCCCC---------CCCCCCEEEEe
Confidence 46799999997654 47899999864
No 130
>PF12124 Nsp3_PL2pro: Coronavirus polyprotein cleavage domain; InterPro: IPR022733 This domain is found in SARS coronaviruses, and is about 70 amino acids in length. It is found associated with various other coronavirus proteins due to the polyprotein nature of most viral translation. PL2pro is a domain of the non-structural protein nsp3. The domain performs three of the cleavages required to separate the translated polyprotein into its distinct proteins. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity, 0016788 hydrolase activity, acting on ester bonds, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2KAF_A 2KQW_A.
Probab=34.52 E-value=81 Score=19.69 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=17.4
Q ss_pred eeeeCCEEEccCCC-ceEEEECCEEE
Q psy12951 71 VVNVGDKVLLPKFG-GTKIEVEGQEL 95 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~-g~~v~~~g~~y 95 (111)
.+|.||+++|.--. -.++-++|+-+
T Consensus 31 flkrgdkivyht~~~~iefh~~gevl 56 (66)
T PF12124_consen 31 FLKRGDKIVYHTVENPIEFHMDGEVL 56 (66)
T ss_dssp EEEETTEEEEE-SSSS--EEETTEEE
T ss_pred HHhcCCEEEEEecCCceEEEecCcEe
Confidence 68999999998855 47778888754
No 131
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=34.14 E-value=66 Score=19.19 Aligned_cols=9 Identities=33% Similarity=0.335 Sum_probs=4.8
Q ss_pred CCeEEEEec
Q psy12951 20 LDRILVIKD 28 (111)
Q Consensus 20 gDrVLVk~~ 28 (111)
+|+|+|+..
T Consensus 35 gD~V~v~i~ 43 (58)
T PF08206_consen 35 GDKVLVRIT 43 (58)
T ss_dssp T-EEEEEEE
T ss_pred CCEEEEEEe
Confidence 566666654
No 132
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=34.12 E-value=36 Score=25.97 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=19.4
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. ..++||+|+..
T Consensus 61 e~~G~v~~~g~~~~---------~~~~G~~V~~~ 85 (334)
T PRK13771 61 EVVGTVEEVGENVK---------GFKPGDRVASL 85 (334)
T ss_pred cceEEEEEeCCCCc---------cCCCCCEEEEC
Confidence 46799999997653 36799999864
No 133
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=33.64 E-value=35 Score=25.04 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=19.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|.|+++|++.. .+++||+|+.-
T Consensus 61 e~~G~v~~~g~~~~---------~~~~G~~V~~~ 85 (320)
T cd05286 61 EGAGVVEAVGPGVT---------GFKVGDRVAYA 85 (320)
T ss_pred ceeEEEEEECCCCC---------CCCCCCEEEEe
Confidence 46799999997653 47899999874
No 134
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=33.54 E-value=81 Score=21.76 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=15.8
Q ss_pred eEEEECCEEEEEEecCcEE
Q psy12951 86 TKIEVEGQELHLFKEADLL 104 (111)
Q Consensus 86 ~~v~~~g~~y~iv~~~DIl 104 (111)
.=+.++|++|+++|.++-.
T Consensus 60 ~Gi~l~G~KY~~l~~d~~~ 78 (127)
T cd00148 60 TGLTLGGQKYMVIRADDRS 78 (127)
T ss_pred CCEEECCeEEEEEecCccE
Confidence 4489999999999988743
No 135
>PRK11171 hypothetical protein; Provisional
Probab=33.39 E-value=1.9e+02 Score=22.45 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=36.3
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEECC-E--EEEEEe
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEG-Q--ELHLFK 99 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~~g-~--~y~iv~ 99 (111)
..+...|--|.+....+|+.. .|+.||.+.|+.+.-..+..-| + .|++++
T Consensus 205 ~ee~i~Vl~G~~~~~~~~~~~--~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k 257 (266)
T PRK11171 205 MEHGLYVLEGKGVYRLNNDWV--EVEAGDFIWMRAYCPQACYAGGPGPFRYLLYK 257 (266)
T ss_pred ceEEEEEEeCEEEEEECCEEE--EeCCCCEEEECCCCCEEEECCCCCcEEEEEEc
Confidence 446667777777777677654 6899999999999888887633 3 566554
No 136
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=33.14 E-value=49 Score=30.54 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=14.2
Q ss_pred eeeeCCEEEccCCCc
Q psy12951 71 VVNVGDKVLLPKFGG 85 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~g 85 (111)
++|+||+|-++.+.|
T Consensus 660 pvkvGD~It~g~~~G 674 (835)
T COG3264 660 PVKVGDTVTIGTVSG 674 (835)
T ss_pred CcccCCEEEECCceE
Confidence 799999999999998
No 137
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=33.14 E-value=35 Score=25.31 Aligned_cols=25 Identities=40% Similarity=0.383 Sum_probs=19.3
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|.|+++|++.. .+++||+|+.-
T Consensus 64 e~~G~v~~~G~~~~---------~~~~Gd~V~~~ 88 (326)
T cd08272 64 DVAGVVEAVGEGVT---------RFRVGDEVYGC 88 (326)
T ss_pred ceeEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 46799999997653 46899999853
No 138
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=33.07 E-value=36 Score=25.41 Aligned_cols=25 Identities=40% Similarity=0.438 Sum_probs=19.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+..
T Consensus 63 e~~G~v~~~G~~~~---------~~~~Gd~V~~~ 87 (325)
T cd08271 63 DGAGVVVAVGAKVT---------GWKVGDRVAYH 87 (325)
T ss_pred ceEEEEEEeCCCCC---------cCCCCCEEEec
Confidence 46799999997653 46899999864
No 139
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=33.03 E-value=60 Score=20.05 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=14.3
Q ss_pred eeeeCCEEEccCCC--ceEEEECCEEE
Q psy12951 71 VVNVGDKVLLPKFG--GTKIEVEGQEL 95 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~--g~~v~~~g~~y 95 (111)
.+++||.+.++... -..+.++|...
T Consensus 28 ~L~~Gdvi~l~~~~~~~v~l~v~g~~~ 54 (77)
T PF01052_consen 28 NLKVGDVIPLDKPADEPVELRVNGQPI 54 (77)
T ss_dssp C--TT-EEEECCESSTEEEEEETTEEE
T ss_pred cCCCCCEEEeCCCCCCCEEEEECCEEE
Confidence 67788888887763 35556677644
No 140
>PRK10579 hypothetical protein; Provisional
Probab=32.78 E-value=1.3e+02 Score=20.47 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=28.5
Q ss_pred cceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCC-ceEEEECCEEEEEEecCcEEE
Q psy12951 35 KGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFG-GTKIEVEGQELHLFKEADLLA 105 (111)
Q Consensus 35 ~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~-g~~v~~~g~~y~iv~~~DIla 105 (111)
.=||++|....=.....++..|=.|.. .|+.-+.=-+..|. |..+++.+..-+=++.++..+
T Consensus 26 TlGVm~pGey~F~T~~~E~MeivsG~l---------~V~Lpg~~ew~~~~aG~sF~VpanssF~l~v~~~t~ 88 (94)
T PRK10579 26 SVGVMAEGEYTFSTAEPEEMTVISGAL---------NVLLPGATDWQVYEAGEVFNVPGHSEFHLQVAEPTS 88 (94)
T ss_pred EEEEEeeeEEEEcCCCcEEEEEEeeEE---------EEECCCCcccEEeCCCCEEEECCCCeEEEEECccee
Confidence 358899876432333444444444443 23332222233332 455555544444444444443
No 141
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=32.31 E-value=41 Score=26.20 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=17.9
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++ +.. .+++||+|.+.
T Consensus 66 E~~G~V~~v--~v~---------~~~vGdrV~~~ 88 (343)
T PRK09880 66 EVIGKIVHS--DSS---------GLKEGQTVAIN 88 (343)
T ss_pred ccEEEEEEe--cCc---------cCCCCCEEEEC
Confidence 467999999 332 48999999875
No 142
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=31.75 E-value=44 Score=22.35 Aligned_cols=18 Identities=17% Similarity=0.422 Sum_probs=14.9
Q ss_pred ceEEEECCEEEEEEecCc
Q psy12951 85 GTKIEVEGQELHLFKEAD 102 (111)
Q Consensus 85 g~~v~~~g~~y~iv~~~D 102 (111)
..-|.++|++|.++|.+|
T Consensus 58 ~~gi~l~G~kY~~~~~d~ 75 (121)
T PF00235_consen 58 SNGITLGGKKYIVLRADD 75 (121)
T ss_dssp HH-EEETTEEEEEEEEET
T ss_pred cCCeEEcCcEeEEEecCC
Confidence 356999999999999876
No 143
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=31.74 E-value=64 Score=20.89 Aligned_cols=12 Identities=50% Similarity=0.592 Sum_probs=9.9
Q ss_pred eeeeCCEEEccC
Q psy12951 71 VVNVGDKVLLPK 82 (111)
Q Consensus 71 ~vk~GD~Vl~~~ 82 (111)
++++||.|+..-
T Consensus 35 ~~~vGD~VLVH~ 46 (76)
T TIGR00074 35 EVKVGDYVLVHV 46 (76)
T ss_pred CCCCCCEEEEec
Confidence 689999999754
No 144
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=31.51 E-value=41 Score=25.53 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=19.8
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. ..++||+|++-
T Consensus 66 e~~G~v~~~G~~v~---------~~~~Gd~V~~~ 90 (336)
T cd08252 66 DASGVVEAVGSEVT---------LFKVGDEVYYA 90 (336)
T ss_pred ceEEEEEEcCCCCC---------CCCCCCEEEEc
Confidence 46799999998653 46899999974
No 145
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=31.11 E-value=1e+02 Score=21.06 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=13.3
Q ss_pred eeeeCCEEEccC-CCceEEEECC
Q psy12951 71 VVNVGDKVLLPK-FGGTKIEVEG 92 (111)
Q Consensus 71 ~vk~GD~Vl~~~-y~g~~v~~~g 92 (111)
.+++||+|+... .-|+-+++++
T Consensus 52 ~Lk~Gd~VvT~gGi~G~Vv~i~~ 74 (106)
T PRK05585 52 SLAKGDEVVTNGGIIGKVTKVSE 74 (106)
T ss_pred hcCCCCEEEECCCeEEEEEEEeC
Confidence 567777776543 4466566655
No 146
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=31.08 E-value=44 Score=25.32 Aligned_cols=26 Identities=38% Similarity=0.399 Sum_probs=20.1
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
...|.|+++|++.. .+++||+|+...
T Consensus 67 e~~G~v~~vG~~v~---------~~~~Gd~V~~~~ 92 (329)
T cd08250 67 EGVGEVVAVGEGVT---------DFKVGDAVATMS 92 (329)
T ss_pred eeEEEEEEECCCCC---------CCCCCCEEEEec
Confidence 46799999997643 468999999753
No 147
>PF11901 DUF3421: Protein of unknown function (DUF3421); InterPro: IPR024518 This domain of unknown function is found in the fish toxin Natterin [] and in uncharacterised proteins.
Probab=30.91 E-value=68 Score=22.05 Aligned_cols=49 Identities=24% Similarity=0.376 Sum_probs=36.1
Q ss_pred eccCcc--ccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEE
Q psy12951 40 IPEKAQ--QEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEV 90 (111)
Q Consensus 40 LP~~~~--~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~ 90 (111)
+|..+- .....|..+-||-... +|...|-.+.++..+.|=.|.|.|+.+
T Consensus 68 iP~~av~~G~~~~Ge~lyIgR~~~--~g~~~~GKv~~s~~~~~ip~gG~E~~~ 118 (119)
T PF11901_consen 68 IPPNAVVGGRTEDGEPLYIGRAHY--NGSLIPGKVHPSHKCCYIPYGGKEISF 118 (119)
T ss_pred cCCCcEEcccccCCCEEEEEEEEE--CCeeEEEEEEcCCCEEEEEECCEEEEc
Confidence 455442 2455678888887665 677777788888889999999888765
No 148
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=30.91 E-value=86 Score=18.20 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=24.6
Q ss_pred cCceeCCCCeeecceeeeCCEEEccCCCceEEEE-CCEEEEEE
Q psy12951 57 GPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEV-EGQELHLF 98 (111)
Q Consensus 57 G~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~-~g~~y~iv 98 (111)
|.+....+|+ ...+++||.++++...--.+.. .++++.++
T Consensus 28 G~~~~~~~~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l 68 (71)
T PF07883_consen 28 GEGTLTVDGE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFL 68 (71)
T ss_dssp SEEEEEETTE--EEEEETTEEEEEETTSEEEEEEESSSEEEEE
T ss_pred CCEEEEEccE--EeEccCCEEEEECCCCeEEEEECCCCCEEEE
Confidence 4444333444 3579999999999887655544 33444443
No 149
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=30.08 E-value=70 Score=25.30 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=27.5
Q ss_pred eeeeCCEEEccC-CCceEEEECCEEEEEEecCcEEEEee
Q psy12951 71 VVNVGDKVLLPK-FGGTKIEVEGQELHLFKEADLLAVIE 108 (111)
Q Consensus 71 ~vk~GD~Vl~~~-y~g~~v~~~g~~y~iv~~~DIlavi~ 108 (111)
.+++||+|.|-. |+...+..= ..|++++.+.|...|.
T Consensus 316 ~~~vGd~v~~~p~h~c~t~~~~-~~~~vv~~~~v~~~w~ 353 (358)
T cd06819 316 PLKIGDRLELVPGHCDPTVNLH-DWYVGVRGGVVEDVWP 353 (358)
T ss_pred CCCCCCEEEEECCCcCcccccc-CEEEEEECCEEEEEEE
Confidence 589999999977 766666543 3577888877777764
No 150
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=30.03 E-value=17 Score=23.58 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=0.0
Q ss_pred eeeeCCEEEccC-CCceEEEECCEEEEEEe
Q psy12951 71 VVNVGDKVLLPK-FGGTKIEVEGQELHLFK 99 (111)
Q Consensus 71 ~vk~GD~Vl~~~-y~g~~v~~~g~~y~iv~ 99 (111)
++++||+|+... .-|+=+++++ +++.+.
T Consensus 36 ~Lk~Gd~VvT~gGi~G~V~~i~~-~~v~le 64 (82)
T PF02699_consen 36 SLKPGDEVVTIGGIYGTVVEIDD-DTVVLE 64 (82)
T ss_dssp ------------------------------
T ss_pred cCCCCCEEEECCcEEEEEEEEeC-CEEEEE
Confidence 688888888765 5576666643 333343
No 151
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=29.97 E-value=62 Score=20.91 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=15.4
Q ss_pred eeCCeEEEEecCCCCcccceEE
Q psy12951 18 PLLDRILVIKDEPLTKTKGGVL 39 (111)
Q Consensus 18 PlgDrVLVk~~~~e~~T~gGIi 39 (111)
=-||+|||+..+..+.+++=|+
T Consensus 40 ~~GD~VlV~~~~~~~~~kg~Iv 61 (78)
T cd04456 40 KRGDFLIVDPIEEGEDVKADII 61 (78)
T ss_pred cCCCEEEEEecccCCCceEEEE
Confidence 4599999998775455655553
No 152
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=29.76 E-value=42 Score=24.64 Aligned_cols=25 Identities=48% Similarity=0.581 Sum_probs=19.2
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+.+|++.. .+++||+|+.-
T Consensus 64 e~~G~v~~vg~~~~---------~~~~Gd~V~~~ 88 (323)
T cd05276 64 EVAGVVVAVGPGVT---------GWKVGDRVCAL 88 (323)
T ss_pred eeEEEEEeeCCCCC---------CCCCCCEEEEe
Confidence 45799999997653 46889999864
No 153
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=29.64 E-value=58 Score=24.05 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=20.9
Q ss_pred eeeeCCEEEccCCCceEEEECCEEEEEEecCc
Q psy12951 71 VVNVGDKVLLPKFGGTKIEVEGQELHLFKEAD 102 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~g~~v~~~g~~y~iv~~~D 102 (111)
.+++||.|.+..-.|+...|.=.+-.+++.+|
T Consensus 108 ~L~~GD~I~v~~~~g~~~~Y~V~~~~iV~~~d 139 (174)
T TIGR03784 108 ELRPGDVIRLQTPDGQWQSYQVTATRVVDESE 139 (174)
T ss_pred hCCCCCEEEEEECCCeEEEEEEeEEEEECCcc
Confidence 78999999998777765444333334455544
No 154
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=29.36 E-value=43 Score=25.83 Aligned_cols=24 Identities=42% Similarity=0.432 Sum_probs=18.8
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|+... ..++||+|..
T Consensus 64 e~~G~V~~~G~~v~---------~~~~Gd~V~~ 87 (341)
T cd05281 64 EFAGEVVEVGEGVT---------RVKVGDYVSA 87 (341)
T ss_pred ceEEEEEEECCCCC---------CCCCCCEEEE
Confidence 46899999997542 3689999975
No 155
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=29.20 E-value=56 Score=22.58 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=15.0
Q ss_pred eEEEECCEEEEEEecCcE
Q psy12951 86 TKIEVEGQELHLFKEADL 103 (111)
Q Consensus 86 ~~v~~~g~~y~iv~~~DI 103 (111)
.=+.++|++|+++|.+|.
T Consensus 62 ~Gi~l~G~Ky~~~~~d~~ 79 (129)
T smart00392 62 NGLTLGGQKYMVIRADDR 79 (129)
T ss_pred CCeEECCeEEEEEEecCc
Confidence 458999999999998764
No 156
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=29.11 E-value=76 Score=23.85 Aligned_cols=50 Identities=24% Similarity=0.269 Sum_probs=27.2
Q ss_pred eeeEEEEe--cCceeC---CCC----eeecceeeeCCEEEccCCCc-eEEEECCEEEEEE
Q psy12951 49 NNAVVVAV--GPGART---PNG----EYIKPVVNVGDKVLLPKFGG-TKIEVEGQELHLF 98 (111)
Q Consensus 49 ~~G~VvaV--G~G~~~---~~G----~~~p~~vk~GD~Vl~~~y~g-~~v~~~g~~y~iv 98 (111)
..++|-.+ |.|... .+| +.....+++||.|+.|++-+ ..|..+++.+.+.
T Consensus 82 ~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~ 141 (182)
T PF06560_consen 82 SYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFA 141 (182)
T ss_dssp T--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEE
T ss_pred CCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEECCCCcEEEE
Confidence 34555444 444432 455 55667899999999999554 7777777666543
No 157
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=28.76 E-value=1.1e+02 Score=23.03 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=24.4
Q ss_pred CCCeeecceeeeCCEEEccCCCceEEEE-CCEEEEE
Q psy12951 63 PNGEYIKPVVNVGDKVLLPKFGGTKIEV-EGQELHL 97 (111)
Q Consensus 63 ~~G~~~p~~vk~GD~Vl~~~y~g~~v~~-~g~~y~i 97 (111)
.+|+.....+++||.|+++.+..-.+.. +++.+.+
T Consensus 115 ~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~f 150 (191)
T PRK04190 115 PEGEARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVF 150 (191)
T ss_pred CCCcEEEEEECCCCEEEECCCCcEEeEECCCCCEEE
Confidence 3455556789999999999988766655 3344443
No 158
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.67 E-value=27 Score=24.37 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=10.8
Q ss_pred eeeeCCEEEccC
Q psy12951 71 VVNVGDKVLLPK 82 (111)
Q Consensus 71 ~vk~GD~Vl~~~ 82 (111)
.+|+||+++|+.
T Consensus 33 ~ik~GD~IiF~~ 44 (111)
T COG4043 33 QIKPGDKIIFNG 44 (111)
T ss_pred CCCCCCEEEEcC
Confidence 699999999985
No 159
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=28.50 E-value=57 Score=29.43 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=22.3
Q ss_pred ceeeEEEEecCceeC---CCCeeecceeeeCCEEE
Q psy12951 48 VNNAVVVAVGPGART---PNGEYIKPVVNVGDKVL 79 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~---~~G~~~p~~vk~GD~Vl 79 (111)
|.-|+|+. |.+..+ -+||-.|...++||.|+
T Consensus 245 PvDG~V~~-G~s~vDeS~iTGEs~PV~k~~Gd~V~ 278 (713)
T COG2217 245 PVDGVVVS-GSSSVDESMLTGESLPVEKKPGDEVF 278 (713)
T ss_pred cCCeEEEe-CcEEeecchhhCCCCCEecCCCCEEe
Confidence 55566665 333443 36999999999999997
No 160
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=28.46 E-value=31 Score=22.63 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=12.5
Q ss_pred ceeeeCCEEEccCCC
Q psy12951 70 PVVNVGDKVLLPKFG 84 (111)
Q Consensus 70 ~~vk~GD~Vl~~~y~ 84 (111)
+.||.||.|++.+-.
T Consensus 4 L~Vk~Gd~ViV~~~~ 18 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQ 18 (75)
T ss_pred cccCCCCEEEEecCc
Confidence 379999999998755
No 161
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=28.16 E-value=1.1e+02 Score=21.28 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=16.1
Q ss_pred eeeeCCEEEccC-CCceEEEECCE-EEEEEecCcEE
Q psy12951 71 VVNVGDKVLLPK-FGGTKIEVEGQ-ELHLFKEADLL 104 (111)
Q Consensus 71 ~vk~GD~Vl~~~-y~g~~v~~~g~-~y~iv~~~DIl 104 (111)
.+++||.|+-.. .-|+=++++++ .++.+..+.+.
T Consensus 36 sLk~GD~VvT~GGi~G~V~~I~~~~~~v~le~~gv~ 71 (113)
T PRK06531 36 AIQKGDEVVTIGGLYGTVDEVDTEAKTIVLDVDGVY 71 (113)
T ss_pred hcCCCCEEEECCCcEEEEEEEecCCCEEEEEECCEE
Confidence 466666666433 44544444432 34444333333
No 162
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=28.06 E-value=64 Score=20.31 Aligned_cols=12 Identities=50% Similarity=0.601 Sum_probs=7.8
Q ss_pred eeeeCCEEEccC
Q psy12951 71 VVNVGDKVLLPK 82 (111)
Q Consensus 71 ~vk~GD~Vl~~~ 82 (111)
++++||.|+..-
T Consensus 37 ~v~~Gd~VLVHa 48 (68)
T PF01455_consen 37 DVKVGDYVLVHA 48 (68)
T ss_dssp SB-TT-EEEEET
T ss_pred CCCCCCEEEEec
Confidence 589999999743
No 163
>PRK12278 50S ribosomal protein L21/unknown domain fusion protein; Provisional
Probab=28.00 E-value=2.3e+02 Score=21.99 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=14.6
Q ss_pred eeeeCCEEEccCCC---ceEEEEC
Q psy12951 71 VVNVGDKVLLPKFG---GTKIEVE 91 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~---g~~v~~~ 91 (111)
-|..||.+...+.. |.+|+|+
T Consensus 13 kV~~Gd~i~Vekl~~~~G~~i~~~ 36 (221)
T PRK12278 13 KVQAGDLLRVEKLAAEAGETVQFG 36 (221)
T ss_pred EEeCCCEEEEeccCCCCCCEEEEe
Confidence 57788888877643 5666665
No 164
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=27.92 E-value=1.9e+02 Score=23.86 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=21.7
Q ss_pred eeeeCCEEEccC--CCceEEEECCEEEEEEecCcEEEEe
Q psy12951 71 VVNVGDKVLLPK--FGGTKIEVEGQELHLFKEADLLAVI 107 (111)
Q Consensus 71 ~vk~GD~Vl~~~--y~g~~v~~~g~~y~iv~~~DIlavi 107 (111)
.|++||.|-=.+ -+|. +..+|..+++-...||.|..
T Consensus 208 ~Vk~GD~VkkGqvLIsG~-i~~~~~~~~v~A~g~V~a~t 245 (382)
T TIGR02876 208 VVKKGDVVKKGDLLISGI-LGKEGKTYTVHAEGEVFART 245 (382)
T ss_pred EEccCCEEcCCCEEEEeE-eCCCCceEEEccceEEEEEE
Confidence 577777776544 2343 44455555556677787765
No 165
>PF13856 Gifsy-2: ATP-binding sugar transporter from pro-phage; PDB: 2PP6_A.
Probab=27.55 E-value=1.2e+02 Score=19.77 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=17.8
Q ss_pred eecceeeeCCEEEccCCCceEEEECCEEEEEEecC
Q psy12951 67 YIKPVVNVGDKVLLPKFGGTKIEVEGQELHLFKEA 101 (111)
Q Consensus 67 ~~p~~vk~GD~Vl~~~y~g~~v~~~g~~y~iv~~~ 101 (111)
-.-+.|+..|.-- +--|..|.+||+.|.+-+..
T Consensus 53 ~~~L~v~~~d~~~--P~~gd~v~~dG~~y~V~~~~ 85 (95)
T PF13856_consen 53 QPTLYVFSSDYPK--PRRGDRVVIDGESYTVTRFQ 85 (95)
T ss_dssp -EEEEE--SS-------TT-EEEETTEEEEEEEEE
T ss_pred ceEEEEEcCCCCC--CCCCCEEEECCeEEEEeEEe
Confidence 3445677777322 55578889999999987643
No 166
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=27.52 E-value=50 Score=24.38 Aligned_cols=25 Identities=40% Similarity=0.420 Sum_probs=19.1
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|.|+++|+... .+++||+|+--
T Consensus 64 e~~G~v~~vg~~~~---------~~~~Gd~V~~~ 88 (325)
T TIGR02824 64 EVAGEVVAVGEGVS---------RWKVGDRVCAL 88 (325)
T ss_pred eeEEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 46799999997543 46899999863
No 167
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=27.45 E-value=51 Score=24.69 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=19.5
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|+.-
T Consensus 63 e~~G~v~~~g~~~~---------~~~~G~~V~~~ 87 (337)
T cd08275 63 ECAGTVEAVGEGVK---------DFKVGDRVMGL 87 (337)
T ss_pred eeEEEEEEECCCCc---------CCCCCCEEEEe
Confidence 46799999997654 46889999864
No 168
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=26.50 E-value=52 Score=24.10 Aligned_cols=26 Identities=46% Similarity=0.565 Sum_probs=20.0
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
...|.|+++|++.. .+++||+|....
T Consensus 66 e~~G~v~~~G~~~~---------~~~~G~~V~~~~ 91 (309)
T cd05289 66 DVAGVVVAVGPGVT---------GFKVGDEVFGMT 91 (309)
T ss_pred ceeEEEEeeCCCCC---------CCCCCCEEEEcc
Confidence 46799999997653 468899998654
No 169
>PRK10689 transcription-repair coupling factor; Provisional
Probab=25.91 E-value=87 Score=29.78 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=24.1
Q ss_pred eeeeCCEEEccCCC-c-----eEEEECC--EEEEEEecC
Q psy12951 71 VVNVGDKVLLPKFG-G-----TKIEVEG--QELHLFKEA 101 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~-g-----~~v~~~g--~~y~iv~~~ 101 (111)
++++||.|++.+|+ | ..++++| .+|+.+...
T Consensus 476 ~l~~Gd~VVh~~~Gig~~~gi~~~~~~g~~~~~~~l~y~ 514 (1147)
T PRK10689 476 ELHPGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA 514 (1147)
T ss_pred hCCCCCEEEecCCCeEEEeeEEEEecCCcceeEEEEEEC
Confidence 89999999999988 3 3456666 688887653
No 170
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=25.69 E-value=57 Score=23.10 Aligned_cols=34 Identities=18% Similarity=0.440 Sum_probs=22.0
Q ss_pred ceeeeCCEEEccC------CCceEEEECCEEEEEEecCcEE
Q psy12951 70 PVVNVGDKVLLPK------FGGTKIEVEGQELHLFKEADLL 104 (111)
Q Consensus 70 ~~vk~GD~Vl~~~------y~g~~v~~~g~~y~iv~~~DIl 104 (111)
..+|+|.+++.+. -.-..+.+.++ --|+|++|||
T Consensus 3 l~LkpgERi~INGAVi~N~drr~~l~i~n~-a~~Lre~dil 42 (126)
T PF07378_consen 3 LSLKPGERIIINGAVIRNGDRRSTLEIEND-APFLREKDIL 42 (126)
T ss_pred eeecCCCEEEEcCeEEEeCCCceEEEEecC-CceechhccC
Confidence 3577888887754 11245556555 6678888876
No 171
>PRK02268 hypothetical protein; Provisional
Probab=25.39 E-value=34 Score=24.83 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=11.6
Q ss_pred Ceeecc-eeeeCCEEEc
Q psy12951 65 GEYIKP-VVNVGDKVLL 80 (111)
Q Consensus 65 G~~~p~-~vk~GD~Vl~ 80 (111)
|+..|+ -+|+||.++|
T Consensus 28 gK~apl~RmkpGD~ivy 44 (141)
T PRK02268 28 GKAAPLRRMKPGDWIIY 44 (141)
T ss_pred CccchhhcCCCCCEEEE
Confidence 334444 6899999997
No 172
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=24.80 E-value=45 Score=20.15 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=9.6
Q ss_pred eeeeCCEEEcc
Q psy12951 71 VVNVGDKVLLP 81 (111)
Q Consensus 71 ~vk~GD~Vl~~ 81 (111)
.+.+||.|.|.
T Consensus 40 ~~~vGD~V~~~ 50 (64)
T cd04451 40 RILPGDRVKVE 50 (64)
T ss_pred ccCCCCEEEEE
Confidence 47899999988
No 173
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=24.78 E-value=61 Score=24.30 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=18.8
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|.|+++|+... .+++||+|+-.
T Consensus 64 e~~G~v~~~G~~~~---------~~~~Gd~V~~~ 88 (336)
T cd08276 64 DGAGEVVAVGEGVT---------RFKVGDRVVPT 88 (336)
T ss_pred ceeEEEEEeCCCCc---------CCCCCCEEEEe
Confidence 45799999997543 36789998864
No 174
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=24.44 E-value=21 Score=24.13 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=13.5
Q ss_pred EEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 52 VVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 52 ~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
.|+++.+|... ...+++||+|.|++
T Consensus 84 ~vLE~~aG~~~------~~~i~~Gd~v~~~~ 108 (108)
T PF02643_consen 84 YVLELPAGWFE------KLGIKVGDRVRIEP 108 (108)
T ss_dssp EEEEEETTHHH------HHT--TT-EEE---
T ss_pred EEEEcCCCchh------hcCCCCCCEEEecC
Confidence 38888877652 33599999998763
No 175
>PF03293 Pox_RNA_pol: Poxvirus DNA-directed RNA polymerase, 18 kD subunit; InterPro: IPR004973 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The Poxvirus DNA-directed RNA polymerase (2.7.7.6 from EC) catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. The enzyme consists of at least eight subunits, this is the 18 kDa subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0019083 viral transcription
Probab=24.42 E-value=1.8e+02 Score=21.54 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=20.6
Q ss_pred eeeeCCEEEccCCCceEEEECCEEEEEEecCcEE
Q psy12951 71 VVNVGDKVLLPKFGGTKIEVEGQELHLFKEADLL 104 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~g~~v~~~g~~y~iv~~~DIl 104 (111)
.|.-||.|---.-..-.|.|++.+|.|+|...+.
T Consensus 98 ~V~CgDLiCkl~rdsGtVSf~dsKYCfirNg~vY 131 (160)
T PF03293_consen 98 TVQCGDLICKLSRDSGTVSFNDSKYCFIRNGVVY 131 (160)
T ss_pred EEEcCcEEEEeeccCCeEEecCceEEEEECCEEe
Confidence 4555666543222223477888888888876543
No 176
>PF12852 Cupin_6: Cupin
Probab=24.38 E-value=60 Score=23.19 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=17.4
Q ss_pred CCeeecceeeeCCEEEccCCCceEE
Q psy12951 64 NGEYIKPVVNVGDKVLLPKFGGTKI 88 (111)
Q Consensus 64 ~G~~~p~~vk~GD~Vl~~~y~g~~v 88 (111)
+|...|..+..||.|+++.=..-.+
T Consensus 51 ~~~~~~~~L~~GDivllp~g~~H~l 75 (186)
T PF12852_consen 51 PGGGEPIRLEAGDIVLLPRGTAHVL 75 (186)
T ss_pred cCCCCeEEecCCCEEEEcCCCCeEe
Confidence 3433677899999999987544333
No 177
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=24.37 E-value=1.1e+02 Score=22.11 Aligned_cols=11 Identities=27% Similarity=0.320 Sum_probs=9.1
Q ss_pred eeeeCCEEEcc
Q psy12951 71 VVNVGDKVLLP 81 (111)
Q Consensus 71 ~vk~GD~Vl~~ 81 (111)
.+++||+|-|.
T Consensus 85 ~l~~GD~V~f~ 95 (131)
T PF11948_consen 85 WLQKGDQVEFY 95 (131)
T ss_pred CcCCCCEEEEE
Confidence 58999999874
No 178
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=24.07 E-value=98 Score=28.75 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=24.1
Q ss_pred ceeeeCCEEEccCCC-c-----eEEEECC--EEEEEEecC
Q psy12951 70 PVVNVGDKVLLPKFG-G-----TKIEVEG--QELHLFKEA 101 (111)
Q Consensus 70 ~~vk~GD~Vl~~~y~-g-----~~v~~~g--~~y~iv~~~ 101 (111)
.++++||.|++.+|+ | ..++++| .+|+.++..
T Consensus 326 ~~l~~Gd~VVh~~~Gig~~~gi~~~~~~g~~~dy~~l~y~ 365 (926)
T TIGR00580 326 NELNPGDYVVHLDHGIGRFLGLETLEVGGIERDYLVLEYA 365 (926)
T ss_pred hhCCCCCEEEecCCCeEEEeeEEEEecCCcceeEEEEEEC
Confidence 489999999999988 3 3456666 588887643
No 179
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=23.99 E-value=1.1e+02 Score=24.27 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=27.5
Q ss_pred eeeeCCEEEccC-CCceEEEECCEEEEEEecCcEEEEee
Q psy12951 71 VVNVGDKVLLPK-FGGTKIEVEGQELHLFKEADLLAVIE 108 (111)
Q Consensus 71 ~vk~GD~Vl~~~-y~g~~v~~~g~~y~iv~~~DIlavi~ 108 (111)
.+++||+|.|-. |+..-+..= ..|++++.+.+..+|.
T Consensus 311 ~~~vGd~i~~~p~h~c~t~~~~-~~~~~~~~~~v~~~w~ 348 (353)
T cd06820 311 LPRVGDRVRVVPNHACVVVNLV-DEVYLVDGGEVVETWP 348 (353)
T ss_pred CCCCCCEEEEECCCcCcchhcC-CEEEEEECCEEEEEEE
Confidence 479999999977 766655544 4588888887877764
No 180
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=23.59 E-value=97 Score=21.50 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=15.0
Q ss_pred eeeeCCEEEccCCCc---eEEE
Q psy12951 71 VVNVGDKVLLPKFGG---TKIE 89 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~g---~~v~ 89 (111)
.+++||+|++....| +.|+
T Consensus 26 tL~~GD~Iv~g~~~Gpi~tkVR 47 (110)
T cd03703 26 TLREGDTIVVCGLNGPIVTKVR 47 (110)
T ss_pred eEecCCEEEEccCCCCceEEEe
Confidence 689999999988776 5554
No 181
>CHL00010 infA translation initiation factor 1
Probab=23.39 E-value=1.2e+02 Score=19.44 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=9.5
Q ss_pred eeeeCCEEEcc
Q psy12951 71 VVNVGDKVLLP 81 (111)
Q Consensus 71 ~vk~GD~Vl~~ 81 (111)
.+.+||.|.|.
T Consensus 46 ~~~vGD~V~ve 56 (78)
T CHL00010 46 RILPGDRVKVE 56 (78)
T ss_pred ccCCCCEEEEE
Confidence 46789999998
No 182
>KOG3309|consensus
Probab=23.36 E-value=24 Score=26.22 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=18.8
Q ss_pred eCCCCeeecceeeeCCEEEccC
Q psy12951 61 RTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 61 ~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
.+.+|+.++...++||.||+--
T Consensus 49 v~~dG~~~~i~g~vGdtlLd~a 70 (159)
T KOG3309|consen 49 VDPDGEEIKIKGKVGDTLLDAA 70 (159)
T ss_pred ECCCCCEEEeeeecchHHHHHH
Confidence 4579999999999999999743
No 183
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=23.15 E-value=1.6e+02 Score=20.00 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=26.6
Q ss_pred cceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCC-ceEEEECCEEEEEEecCcEEEEe
Q psy12951 35 KGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFG-GTKIEVEGQELHLFKEADLLAVI 107 (111)
Q Consensus 35 ~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~-g~~v~~~g~~y~iv~~~DIlavi 107 (111)
.-|+++|....=.....++..|=.|.. .|+.-+.=-+..|. |..+++.+..-+-++-.++.+-+
T Consensus 26 TlGVm~pGeY~F~T~~~E~M~vvsG~l---------~V~lpg~~ew~~~~aGesF~VpanssF~v~v~~~~~Y~ 90 (94)
T PF06865_consen 26 TLGVMLPGEYTFGTSAPERMEVVSGEL---------EVKLPGEDEWQTYSAGESFEVPANSSFDVKVKEPTAYL 90 (94)
T ss_dssp EEEEE-SECEEEEESS-EEEEEEESEE---------EEEETT-SS-EEEETT-EEEE-TTEEEEEEESS-EEEE
T ss_pred eEEEEeeeEEEEcCCCCEEEEEEEeEE---------EEEcCCCcccEEeCCCCeEEECCCCeEEEEECcceeeE
Confidence 358888876432233334444444443 23322222222222 56666655544455555555543
No 184
>PF11549 Sec31: Protein transport protein SEC31; InterPro: IPR021614 Sec31 is involved in COPII coat formation as it forms through the sequential binding of three cytoplasmic proteins: Sar1, Sec23/24 and Sec13/31. Sec13/31 is recruited by the pre-budding complex and polymerisation of Sec13/31 occurs to form an octahedral cage that is the outer shell of the COPII coat []. Sec13/31 is a hetero-tetramer which is organised as a linear array of alpha-solenoid and beta-propeller domains to form a rod in which twenty-four copies assemble to form the COPII cub-octahedron []. ; PDB: 2QTV_D.
Probab=22.91 E-value=30 Score=21.08 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=0.8
Q ss_pred eccCccccceeeEEEEecC
Q psy12951 40 IPEKAQQEVNNAVVVAVGP 58 (111)
Q Consensus 40 LP~~~~~k~~~G~VvaVG~ 58 (111)
||...++|+++++-|+|.|
T Consensus 29 Lpl~vkEKpsRAKavsvap 47 (51)
T PF11549_consen 29 LPLKVKEKPSRAKAVSVAP 47 (51)
T ss_dssp --S----------------
T ss_pred cchhhhccccccccccccc
Confidence 6777788999999999886
No 185
>cd05794 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=22.88 E-value=56 Score=20.08 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=12.3
Q ss_pred ecceeeeCCEEEccCCC
Q psy12951 68 IKPVVNVGDKVLLPKFG 84 (111)
Q Consensus 68 ~p~~vk~GD~Vl~~~y~ 84 (111)
+|+.++.||+|..+--.
T Consensus 34 VP~FI~~Gd~I~V~T~~ 50 (56)
T cd05794 34 VPLFIKEGEKIKVDTRT 50 (56)
T ss_pred cCCeecCCCEEEEECCC
Confidence 57788888888775433
No 186
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=22.78 E-value=61 Score=28.05 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=21.3
Q ss_pred ceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCC
Q psy12951 36 GGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKF 83 (111)
Q Consensus 36 gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y 83 (111)
.||.||..+......| .... ..++++||.|+|...
T Consensus 404 ~GI~LPR~s~~Q~~~G------~~Vs-------~selqpGDLVFF~~~ 438 (481)
T PRK13914 404 AGISLPRTSGAQYAST------TRIS-------ESQAKPGDLVFFDYG 438 (481)
T ss_pred cCCCCCCChHHHHhcC------cccc-------cccCCCCCEEEeCCC
Confidence 5899998764322222 1111 126889999999743
No 187
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=22.77 E-value=1.2e+02 Score=21.65 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=13.6
Q ss_pred eeeeCCEEEccCCCceEEEEC
Q psy12951 71 VVNVGDKVLLPKFGGTKIEVE 91 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~g~~v~~~ 91 (111)
++++||+|.++.+.|.-.+++
T Consensus 60 pf~vGD~I~i~~~~G~V~~I~ 80 (206)
T PF00924_consen 60 PFKVGDRIEIGGVEGRVEEIG 80 (206)
T ss_dssp SS-TT-EEESSS-EEEEEEE-
T ss_pred CccCCCEEEEEEeehHHHhcC
Confidence 578999999999888665554
No 188
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=22.42 E-value=2.1e+02 Score=19.85 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=3.8
Q ss_pred eeEEEEec
Q psy12951 50 NAVVVAVG 57 (111)
Q Consensus 50 ~G~VvaVG 57 (111)
.|+|++++
T Consensus 52 ~G~V~~I~ 59 (109)
T PRK05886 52 QATIVGIT 59 (109)
T ss_pred EEEEEEEe
Confidence 44444444
No 189
>PRK12426 elongation factor P; Provisional
Probab=22.41 E-value=1.3e+02 Score=22.67 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=27.8
Q ss_pred CCCeeecceeeeCCEEEccCCCceEEEE---CCEEEEEEecCc
Q psy12951 63 PNGEYIKPVVNVGDKVLLPKFGGTKIEV---EGQELHLFKEAD 102 (111)
Q Consensus 63 ~~G~~~p~~vk~GD~Vl~~~y~g~~v~~---~g~~y~iv~~~D 102 (111)
.+|..+...++.||++---...-.+.+| ||+.|.||..++
T Consensus 45 ~tG~~~e~tf~s~ek~e~a~ve~~~~qylY~dg~~~~FMd~et 87 (185)
T PRK12426 45 DSDVVVERNFKAGQEVKEAQFEPRNLEYLYLEGDEYLFLDLGN 87 (185)
T ss_pred CCCCeEEEEECCCCeEEEeEEEeeEeEEEEECCCeEEEecCCC
Confidence 4566666688889988665555555544 788888887653
No 190
>PHA02951 Hypothetical protein; Provisional
Probab=22.34 E-value=4.6e+02 Score=21.78 Aligned_cols=84 Identities=18% Similarity=0.176 Sum_probs=49.8
Q ss_pred ccceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCce---eCCCCeeecceeeeCCEEEccCCCceEE-
Q psy12951 13 SQKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGA---RTPNGEYIKPVVNVGDKVLLPKFGGTKI- 88 (111)
Q Consensus 13 ~~~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~---~~~~G~~~p~~vk~GD~Vl~~~y~g~~v- 88 (111)
...+.-..|--||+..--+.-+.+-+++|.++. ..+++==--.|. ..++-......+.+||.++++-+-|..+
T Consensus 92 ~eg~Fev~d~~lVkLkHGn~f~~~~~~~~~s~g---FvAtICIKNeGiSgl~Vp~t~~LK~ni~~GD~IVsRs~rGv~fL 168 (337)
T PHA02951 92 RDGNFRPADCFLVKLKHGNGFTKGALYLGHSAG---FTATICLKNEGISGLYIPGTSVLKINICQGDTIVSRSSRGVQFL 168 (337)
T ss_pred ccCceeeeeeEEEEeecCchhhccccccCCccc---eEEEEEEcCCCeeEEEeCCCchheeeeccCcEEEEeccccceec
Confidence 344455677788888877777777777777642 111111111111 1111122233677899999999988877
Q ss_pred -EECCE-EEEEEe
Q psy12951 89 -EVEGQ-ELHLFK 99 (111)
Q Consensus 89 -~~~g~-~y~iv~ 99 (111)
++.|+ .|++++
T Consensus 169 PQIGGeaiYLIVs 181 (337)
T PHA02951 169 PQIGGEAIYLVVS 181 (337)
T ss_pred cccCceeEEEEEE
Confidence 67776 677664
No 191
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=22.34 E-value=92 Score=21.01 Aligned_cols=11 Identities=73% Similarity=0.978 Sum_probs=7.0
Q ss_pred ceeeeCCEEEc
Q psy12951 70 PVVNVGDKVLL 80 (111)
Q Consensus 70 ~~vk~GD~Vl~ 80 (111)
+.|++||+|.-
T Consensus 44 p~V~~Gd~V~~ 54 (101)
T PF13375_consen 44 PVVKVGDKVKK 54 (101)
T ss_pred EEEcCCCEEcC
Confidence 36677777754
No 192
>PRK12784 hypothetical protein; Provisional
Probab=22.24 E-value=1e+02 Score=20.57 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=17.8
Q ss_pred EEEEecCceeCCCCeeecceeeeCCEEE
Q psy12951 52 VVVAVGPGARTPNGEYIKPVVNVGDKVL 79 (111)
Q Consensus 52 ~VvaVG~G~~~~~G~~~p~~vk~GD~Vl 79 (111)
+.|++| -+|.+....|.+||.|.
T Consensus 44 e~v~vG-----iSG~I~~v~Ve~Gq~i~ 66 (84)
T PRK12784 44 EKVAVG-----ISGNIRLVNVVVGQQIH 66 (84)
T ss_pred EEEEEe-----eeeeEEEEEeecCceec
Confidence 456777 26888888999999876
No 193
>PHA02965 hypothetical protein; Provisional
Probab=22.20 E-value=2.6e+02 Score=23.73 Aligned_cols=82 Identities=11% Similarity=0.027 Sum_probs=51.2
Q ss_pred cccceeeeCCeEEEEecCCCCcccceEEeccCcccc-----ceeeE-EEEecCceeCCCCeeecceeeeCCEEEccCCCc
Q psy12951 12 LSQKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQE-----VNNAV-VVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGG 85 (111)
Q Consensus 12 ~~~~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k-----~~~G~-VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g 85 (111)
+...+.-..|--||+..--+.-+.+-++.|.++.=- -+.|. ++.|- +-.........||.++++.+-|
T Consensus 119 D~ngyFeVsD~~LVKL~HGN~fm~~~~y~~~sagF~AvICIKNeG~S~I~Vn------hc~~kqHsMq~Gd~II~RSsRG 192 (466)
T PHA02965 119 DGNKYFEVKDIKILQLAHGNDLMNIDKYDDGFFDFIAVICIKNSGRSMIMLK------HCNGKQHSMQDGFCLIARSFYG 192 (466)
T ss_pred cccCceeecceEEEEeeccCcccccccccCCccceEEEEEEccCCceEEEec------ccccceeeeccccEEEEeccch
Confidence 344455567888999888788888888888875311 11121 12221 1111122456999999999988
Q ss_pred eEE--EECCE-EEEEEe
Q psy12951 86 TKI--EVEGQ-ELHLFK 99 (111)
Q Consensus 86 ~~v--~~~g~-~y~iv~ 99 (111)
..+ .+.|+ .|++++
T Consensus 193 I~FLPQIgGeA~YLIVs 209 (466)
T PHA02965 193 INILPQIIGESRYLILK 209 (466)
T ss_pred hhhhhhhCCceEEEEEE
Confidence 777 56665 788775
No 194
>PRK10861 signal peptidase I; Provisional
Probab=22.03 E-value=3e+02 Score=22.48 Aligned_cols=67 Identities=19% Similarity=0.097 Sum_probs=33.2
Q ss_pred eCCeEEEEecCCCCcccceEEeccCc-----cccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEECC
Q psy12951 19 LLDRILVIKDEPLTKTKGGVLIPEKA-----QQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEG 92 (111)
Q Consensus 19 lgDrVLVk~~~~e~~T~gGIiLP~~~-----~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~~g 92 (111)
-||+|||.+..- |+-+|-.. ...+..|-||-.-.-.....-=....-=.+||+|.|....+ .+.+||
T Consensus 98 ~GD~IlVnK~~y------g~~~p~~~~~~~~~~~p~RGDIVVF~~P~~~~~~yIKRVIGlPGD~I~~~~~~~-~l~iNg 169 (324)
T PRK10861 98 IGDFILVEKFAY------GIKDPITQTTLIETGHPKRGDIVVFKYPEDPKLDYIKRVVGLPGDKVTYDPVSK-EVTIQP 169 (324)
T ss_pred CCCEEEEEEeec------CccCccccccccccCCCCCCCEEEEecCCCCCCcEEEEeeecCCcEEEEEeCCC-EEEEcC
Confidence 699999999632 22222111 13467787777642110000011222345789988863222 344444
No 195
>COG0261 RplU Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]
Probab=21.86 E-value=2.8e+02 Score=19.17 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=16.2
Q ss_pred eeeeCCEEEccCCC---ceEEEECCEEEEEEecCc
Q psy12951 71 VVNVGDKVLLPKFG---GTKIEVEGQELHLFKEAD 102 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~---g~~v~~~g~~y~iv~~~D 102 (111)
-|..||.+...+.. |.+|+|| +-+++..++
T Consensus 13 kV~~G~~i~vEkl~~e~g~~v~f~--~VL~v~~~~ 45 (103)
T COG0261 13 KVEEGDVIKVEKLDAEPGDKVEFD--EVLMVGGGE 45 (103)
T ss_pred EEecCCEEEEEEcCCCCCCEEEEE--EEEEEcCCC
Confidence 46677766665533 5666664 334444443
No 196
>PRK11507 ribosome-associated protein; Provisional
Probab=21.66 E-value=2.3e+02 Score=18.14 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=14.9
Q ss_pred eeeeCCEEEccC----CCceEEEECCEEEEEE
Q psy12951 71 VVNVGDKVLLPK----FGGTKIEVEGQELHLF 98 (111)
Q Consensus 71 ~vk~GD~Vl~~~----y~g~~v~~~g~~y~iv 98 (111)
.|+++..|-..+ |.|..|+++|+.|.+.
T Consensus 38 ~V~VNGeve~rRgkKl~~GD~V~~~g~~~~v~ 69 (70)
T PRK11507 38 QVKVDGAVETRKRCKIVAGQTVSFAGHSVQVV 69 (70)
T ss_pred ceEECCEEecccCCCCCCCCEEEECCEEEEEe
Confidence 344444444433 5566666666666543
No 197
>PRK00276 infA translation initiation factor IF-1; Validated
Probab=21.56 E-value=57 Score=20.44 Aligned_cols=11 Identities=36% Similarity=0.431 Sum_probs=9.6
Q ss_pred eeeeCCEEEcc
Q psy12951 71 VVNVGDKVLLP 81 (111)
Q Consensus 71 ~vk~GD~Vl~~ 81 (111)
.+.+||.|.|.
T Consensus 46 ~i~vGD~V~ve 56 (72)
T PRK00276 46 RILPGDKVTVE 56 (72)
T ss_pred ccCCCCEEEEE
Confidence 47899999998
No 198
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=21.54 E-value=1.2e+02 Score=24.12 Aligned_cols=37 Identities=8% Similarity=0.204 Sum_probs=26.6
Q ss_pred eeeeCCEEEccC-CCceEEEECCEEEEEEecCcEE-EEee
Q psy12951 71 VVNVGDKVLLPK-FGGTKIEVEGQELHLFKEADLL-AVIE 108 (111)
Q Consensus 71 ~vk~GD~Vl~~~-y~g~~v~~~g~~y~iv~~~DIl-avi~ 108 (111)
.+++||+|.|-. |+..-+..- ..|++++.+.+. .+|.
T Consensus 331 ~~~vGd~v~~~p~H~c~t~~~~-~~~~~v~~~~~~~~~w~ 369 (374)
T cd06812 331 DLPIGTRLRILPNHACATAAQH-DHYHVLDGEGVVQATWS 369 (374)
T ss_pred CCCCCCEEEEeCCccCcchhcC-CEEEEEeCCCEEEEEec
Confidence 589999997755 766555543 468888887777 6664
No 199
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=21.50 E-value=1.4e+02 Score=18.80 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=18.9
Q ss_pred CCeEEEEecCCCCc--ccceEEeccCccccceeeEEEEe
Q psy12951 20 LDRILVIKDEPLTK--TKGGVLIPEKAQQEVNNAVVVAV 56 (111)
Q Consensus 20 gDrVLVk~~~~e~~--T~gGIiLP~~~~~k~~~G~VvaV 56 (111)
++.++|...+.-.. .-.|.+.|.|...+ .|..+..
T Consensus 19 ~~~~~v~t~~~i~~p~~~~~~i~~RSs~~~--~Gi~v~~ 55 (92)
T cd07557 19 GETVLVPTGEAIELPEGYVGLVFPRSSLAR--KGITVHN 55 (92)
T ss_pred CCEEEEEEeEEEEcCCCeEEEEEcCchhhc--CCEEecC
Confidence 46666655532211 23467777765433 6666665
No 200
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=21.33 E-value=1.3e+02 Score=18.86 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=16.7
Q ss_pred eeeeCCEEEccCCCc--eEEEECCEEEE
Q psy12951 71 VVNVGDKVLLPKFGG--TKIEVEGQELH 96 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~g--~~v~~~g~~y~ 96 (111)
.+++||.+.++.... .++..+|....
T Consensus 28 ~L~~Gdvi~L~~~~~~~v~l~v~g~~~~ 55 (77)
T TIGR02480 28 KLGEGSVIELDKLAGEPLDILVNGRLIA 55 (77)
T ss_pred cCCCCCEEEcCCCCCCcEEEEECCEEEE
Confidence 677888888876443 55566775443
No 201
>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology []. ; GO: 0043043 peptide biosynthetic process, 0005737 cytoplasm; PDB: 1YBY_A 3OYY_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H.
Probab=21.29 E-value=88 Score=19.18 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=11.0
Q ss_pred ecceeeeCCEEEccCCCc
Q psy12951 68 IKPVVNVGDKVLLPKFGG 85 (111)
Q Consensus 68 ~p~~vk~GD~Vl~~~y~g 85 (111)
+|..++.||+|..+--.|
T Consensus 34 VP~FI~~Gd~I~VdT~~g 51 (56)
T PF09285_consen 34 VPLFIEEGDKIKVDTRDG 51 (56)
T ss_dssp EETT--TT-EEEEETTTT
T ss_pred ccceecCCCEEEEECCCC
Confidence 577889999988776554
No 202
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=21.23 E-value=32 Score=24.03 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=0.0
Q ss_pred CCCeeecc-eeeeCCEEEccC
Q psy12951 63 PNGEYIKP-VVNVGDKVLLPK 82 (111)
Q Consensus 63 ~~G~~~p~-~vk~GD~Vl~~~ 82 (111)
.+|. .|. ++++||+|+=.+
T Consensus 5 ~~G~-k~Ie~I~~GD~Vls~d 24 (130)
T PF07591_consen 5 ADGL-KPIEDIKVGDRVLSYD 24 (130)
T ss_dssp ---------------------
T ss_pred cccc-cccccccccccccccc
Confidence 3453 344 899999999654
No 203
>PF06236 MelC1: Tyrosinase co-factor MelC1; InterPro: IPR010928 This family consists of several tyrosinase co-factor MELC1 proteins from a number of Streptomyces species. The melanin operon (melC) of Streptomyces antibioticus contains two genes, melC1 and melC2 (apotyrosinase). It is thought that MelC1 forms a transient binary complex with the downstream apotyrosinase MelC2 to facilitate the incorporation of copper ion and the secretion of tyrosinase indicating that MelC1 is a chaperone for the apotyrosinase MelC2 [].; GO: 0005507 copper ion binding, 0042438 melanin biosynthetic process; PDB: 1WX4_B 2ZWD_B 2ZMZ_B 1WX2_B 1WX5_D 3AWX_B 3AWS_B 2ZMY_B 3AX0_B 2ZWG_B ....
Probab=21.13 E-value=1.2e+02 Score=21.62 Aligned_cols=18 Identities=33% Similarity=0.850 Sum_probs=14.3
Q ss_pred ceEEEECCEEEEEEecCc
Q psy12951 85 GTKIEVEGQELHLFKEAD 102 (111)
Q Consensus 85 g~~v~~~g~~y~iv~~~D 102 (111)
+.+|.+||.++.+||..|
T Consensus 70 ~~~V~IDGr~LhvMr~AD 87 (125)
T PF06236_consen 70 GYEVTIDGRPLHVMRRAD 87 (125)
T ss_dssp SEEEEETTEEE-EEE-TT
T ss_pred ceEEEECCeEeeeEEcCC
Confidence 578999999999999876
No 204
>PRK04542 elongation factor P; Provisional
Probab=21.13 E-value=1.4e+02 Score=22.53 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=28.6
Q ss_pred CCCeeecceeeeCCEEEccCCCceEEEE---CCEEEEEEecCc
Q psy12951 63 PNGEYIKPVVNVGDKVLLPKFGGTKIEV---EGQELHLFKEAD 102 (111)
Q Consensus 63 ~~G~~~p~~vk~GD~Vl~~~y~g~~v~~---~g~~y~iv~~~D 102 (111)
.+|..+...++.||+|---...-.+.+| ||+.|+||..++
T Consensus 47 ~tG~~~e~tfrs~ekve~a~~~~~~~qylY~dg~~~~FMd~et 89 (189)
T PRK04542 47 RTGLKVEERFKGDDILDTVDLTRRPVTFSYIDGDEYVFMDNED 89 (189)
T ss_pred CCCCeEEEEECCCCeEEEEEEEEeEeEEEEeCCCEEEEecCCC
Confidence 4666666788899988776665555544 778888887753
No 205
>TIGR00061 L21 ribosomal protein L21. Eubacterial and chloroplast.
Probab=21.05 E-value=2.8e+02 Score=18.80 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=12.9
Q ss_pred eeeeCCEEEccCCC---ceEEEEC
Q psy12951 71 VVNVGDKVLLPKFG---GTKIEVE 91 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~---g~~v~~~ 91 (111)
-|.+||.+..+... |..++++
T Consensus 12 kV~~Gd~i~Ve~l~~~~G~~i~l~ 35 (101)
T TIGR00061 12 KVEEGQTVRIEKLDAAPGDTVEFD 35 (101)
T ss_pred EEeCCCEEEEcccCCCCCCEEEEE
Confidence 56777777766542 5556554
No 206
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=21.01 E-value=68 Score=18.55 Aligned_cols=9 Identities=44% Similarity=0.608 Sum_probs=4.3
Q ss_pred eeeeCCEEE
Q psy12951 71 VVNVGDKVL 79 (111)
Q Consensus 71 ~vk~GD~Vl 79 (111)
.||.||..+
T Consensus 23 ~VkkGd~L~ 31 (50)
T PF13533_consen 23 QVKKGDVLL 31 (50)
T ss_pred EEcCCCEEE
Confidence 355555443
No 207
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=20.98 E-value=91 Score=24.06 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=18.8
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
...|+|+++|++... .+++||+|+-
T Consensus 65 e~~G~V~~vG~~v~~--------~~~~Gd~V~~ 89 (352)
T cd08247 65 DYSGVIVKVGSNVAS--------EWKVGDEVCG 89 (352)
T ss_pred eeEEEEEEeCccccc--------CCCCCCEEEE
Confidence 568999999976520 3678999974
No 208
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=20.75 E-value=1.5e+02 Score=20.95 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=27.8
Q ss_pred CCCeeecceeeeCCEEEccCCCc---eEEEECCEEEEEEecCc
Q psy12951 63 PNGEYIKPVVNVGDKVLLPKFGG---TKIEVEGQELHLFKEAD 102 (111)
Q Consensus 63 ~~G~~~p~~vk~GD~Vl~~~y~g---~~v~~~g~~y~iv~~~D 102 (111)
.+|.......+.+|+|--....- +=+..+|+.|.|+..++
T Consensus 47 ~tG~~~e~~f~~~~kve~a~ie~~~~q~lY~dg~~~~FMD~et 89 (131)
T COG0231 47 FTGKKVEKTFKADDKVEVAIVERKTAQYLYIDGDFYVFMDLET 89 (131)
T ss_pred cCCCEEEEEEcCCCEEEEeEEeeeeEEEEEcCCCeEEEccCCC
Confidence 46777777888888886655443 44455889999988553
No 209
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=20.74 E-value=94 Score=18.15 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=8.5
Q ss_pred eeeeCCEEEccC
Q psy12951 71 VVNVGDKVLLPK 82 (111)
Q Consensus 71 ~vk~GD~Vl~~~ 82 (111)
..++||.|.|+.
T Consensus 25 ~~~vG~eI~~~~ 36 (56)
T PF12791_consen 25 GMEVGQEIEFDE 36 (56)
T ss_pred CCcccCEEEEec
Confidence 467777777765
No 210
>PRK14578 elongation factor P; Provisional
Probab=20.74 E-value=1.4e+02 Score=22.42 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=27.0
Q ss_pred CCCeeecceeeeCCEEEccCCCceEEEE---CCEEEEEEecCc
Q psy12951 63 PNGEYIKPVVNVGDKVLLPKFGGTKIEV---EGQELHLFKEAD 102 (111)
Q Consensus 63 ~~G~~~p~~vk~GD~Vl~~~y~g~~v~~---~g~~y~iv~~~D 102 (111)
.+|..+....+.||+|--....-.+.++ ||+.|.||..++
T Consensus 47 ~tG~~~e~tf~s~d~ve~a~ve~~~~qylY~dg~~~~FMD~et 89 (187)
T PRK14578 47 LTGQVLEKTFRSGDKVEEADFERHKGQFLYADGDRGVFMDLET 89 (187)
T ss_pred CCCCEEEEEECCCCEEEEeEEEEeEeEEEEeCCCEEEEecCCC
Confidence 4566666678888887666554444433 788888887653
No 211
>PF13403 Hint_2: Hint domain
Probab=20.69 E-value=2e+02 Score=20.43 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=22.6
Q ss_pred CCCCeeecceeeeCCEEEccCCCceEEEECCEEE
Q psy12951 62 TPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQEL 95 (111)
Q Consensus 62 ~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~~g~~y 95 (111)
+.+|.+.--++++||+|+=.+-+-++|..=+...
T Consensus 11 T~~G~~~Ve~L~~GD~V~T~dgg~~~V~wig~~~ 44 (147)
T PF13403_consen 11 TPDGPRPVEDLRPGDRVLTRDGGFQPVRWIGRRT 44 (147)
T ss_pred cCCcCeEeeccCCCCEEEecCCCEEEEEEEEEEE
Confidence 3455444448999999998776667776644443
No 212
>PRK06033 hypothetical protein; Validated
Probab=20.52 E-value=1.4e+02 Score=19.45 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=14.8
Q ss_pred eeeeCCEEEccCCCc--eEEEECCEEE
Q psy12951 71 VVNVGDKVLLPKFGG--TKIEVEGQEL 95 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~g--~~v~~~g~~y 95 (111)
.+++||.+.++.... .++.++|...
T Consensus 27 ~L~~GDVI~L~~~~~~~v~v~V~~~~~ 53 (83)
T PRK06033 27 RMGRGAVIPLDATEADEVWILANNHPI 53 (83)
T ss_pred CCCCCCEEEeCCCCCCcEEEEECCEEE
Confidence 567777777766433 4445566543
No 213
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.43 E-value=71 Score=26.49 Aligned_cols=22 Identities=18% Similarity=0.034 Sum_probs=16.9
Q ss_pred CeeecceeeeCCEEEccCCCce
Q psy12951 65 GEYIKPVVNVGDKVLLPKFGGT 86 (111)
Q Consensus 65 G~~~p~~vk~GD~Vl~~~y~g~ 86 (111)
....|..+++||.|+..+-.|.
T Consensus 154 ~~v~~~~~~~GD~vI~tg~~g~ 175 (339)
T COG0309 154 ILVSPSGARPGDAVIVTGTIGI 175 (339)
T ss_pred cccccCCCCCCCEEEEcCChhH
Confidence 3345667999999999987764
No 214
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=20.20 E-value=85 Score=23.26 Aligned_cols=23 Identities=13% Similarity=0.029 Sum_probs=17.6
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|. . .+++||+|+..
T Consensus 63 e~~G~v~~vG~--~---------~~~~Gd~V~~~ 85 (320)
T cd08243 63 EAVGEVEEAPG--G---------TFTPGQRVATA 85 (320)
T ss_pred eeEEEEEEecC--C---------CCCCCCEEEEe
Confidence 46799999993 1 36899999854
No 215
>PF04943 Pox_F11: Poxvirus F11 protein; InterPro: IPR007027 These proteins belong to the poxvirus F11 family. They are early virus proteins.
Probab=20.08 E-value=5.3e+02 Score=21.68 Aligned_cols=86 Identities=19% Similarity=0.240 Sum_probs=53.4
Q ss_pred hcccceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCce---eCCCCeeecceeeeCCEEEccCCCceE
Q psy12951 11 TLSQKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGA---RTPNGEYIKPVVNVGDKVLLPKFGGTK 87 (111)
Q Consensus 11 ~~~~~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~---~~~~G~~~p~~vk~GD~Vl~~~y~g~~ 87 (111)
.+...+.-..|--||+..--+.-..+-++.|.++. ..+++===-.|. .-.+-......+..||.++++-+-|..
T Consensus 82 ~D~eg~Fev~d~~lvkL~HGn~f~~~~~~~~~s~g---f~a~ICikN~GiSgi~V~~t~~lk~nm~~Gd~ivsrs~rgi~ 158 (366)
T PF04943_consen 82 LDNEGFFEVSDCFLVKLKHGNGFMKGAIYVGNSAG---FVATICIKNEGISGIYVPNTNFLKHNMEEGDYIVSRSSRGIN 158 (366)
T ss_pred hcccCcEeeeeeEEEEEecCchhhcCccccCCccc---eEEEEEEcCCCeeEEEeCCCcceEeeeeeCCEEEEecccccc
Confidence 34455666788889999877777777787887642 111111111111 112222244578999999999998988
Q ss_pred E--EECCE-EEEEEe
Q psy12951 88 I--EVEGQ-ELHLFK 99 (111)
Q Consensus 88 v--~~~g~-~y~iv~ 99 (111)
+ +++|+ .|+++.
T Consensus 159 fLPQIgG~a~YLIv~ 173 (366)
T PF04943_consen 159 FLPQIGGEAIYLIVS 173 (366)
T ss_pred cccccCceeEEEEEE
Confidence 7 67776 676654
No 216
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=20.08 E-value=1.3e+02 Score=23.86 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=13.8
Q ss_pred eeeeCCEEEccCCCceEE
Q psy12951 71 VVNVGDKVLLPKFGGTKI 88 (111)
Q Consensus 71 ~vk~GD~Vl~~~y~g~~v 88 (111)
++++||.|.++++.|+-.
T Consensus 129 pf~vGD~I~i~~~~G~V~ 146 (286)
T PRK10334 129 PFRAGEYVDLGGVAGTVL 146 (286)
T ss_pred CCCCCCEEEECCEEEEEE
Confidence 578888888888877443
No 217
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=20.08 E-value=88 Score=22.96 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=18.9
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|.|+.+|++.. ..++||+|+--
T Consensus 64 e~~G~v~~~g~~~~---------~~~~G~~V~~~ 88 (323)
T cd08241 64 EVAGVVEAVGEGVT---------GFKVGDRVVAL 88 (323)
T ss_pred eeEEEEEEeCCCCC---------CCCCCCEEEEe
Confidence 46799999997543 36789999864
No 218
>TIGR02178 yeiP elongation factor P-like protein YeiP. This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae.
Probab=20.02 E-value=1.3e+02 Score=22.63 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=27.6
Q ss_pred CCCeeecceeeeCCEEEccCCCceEEEE---CCEEEEEEecCc
Q psy12951 63 PNGEYIKPVVNVGDKVLLPKFGGTKIEV---EGQELHLFKEAD 102 (111)
Q Consensus 63 ~~G~~~p~~vk~GD~Vl~~~y~g~~v~~---~g~~y~iv~~~D 102 (111)
.+|..+.-.++.||+|---...-.+.+| ||+.|+||..++
T Consensus 45 ~tG~~~e~tf~s~e~ve~a~le~~~~qylY~dg~~~~FMD~et 87 (186)
T TIGR02178 45 PTGSKVEERFKADDMLDTVELLRREASFSYKDGEEYVFMDEED 87 (186)
T ss_pred CCCCeEEEEECCCCeEEEEEEEEeEeEEEEeCCCeEEEccCCC
Confidence 4566666678888888766655555544 778888887654
Done!