RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12951
(111 letters)
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
b.35.1.1 PDB: 1wf4_o* 1wnr_A
Length = 100
Score = 99.5 bits (249), Expect = 5e-29
Identities = 38/98 (38%), Positives = 62/98 (63%)
Query: 11 TLSQKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKP 70
+ +PL DR++V + E KTKGG+++P+ A+++ V+AVG G NG+ +
Sbjct: 3 EVKTVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPL 62
Query: 71 VVNVGDKVLLPKFGGTKIEVEGQELHLFKEADLLAVIE 108
V GD V+ K+GGT+IE++G+E + E DLLAV++
Sbjct: 63 EVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 100
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop,
structural genomics, PSI, protein structure initiative;
2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB:
1hx5_A 1lep_A 1p82_A 1p83_A
Length = 99
Score = 97.6 bits (244), Expect = 3e-28
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 15 KFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPV-VN 73
+PL D+ILV +E T T G++IP+ A+++ VVAVGPG +GE P+ V
Sbjct: 4 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVA 63
Query: 74 VGDKVLLPKFGGTKIEVEGQELHLFKEADLLAVIEK 109
GD V+ K+GGT+I+ G+E + D+LAV+ K
Sbjct: 64 EGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK 99
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas
oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas
oryzae PV}
Length = 95
Score = 97.2 bits (243), Expect = 4e-28
Identities = 36/93 (38%), Positives = 55/93 (59%)
Query: 15 KFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNV 74
+PL DR++V E + GG++IP+ A+++ VVA+G G NG PVV V
Sbjct: 2 SIKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLHAPVVKV 61
Query: 75 GDKVLLPKFGGTKIEVEGQELHLFKEADLLAVI 107
GDKV+ ++ G+ + EG E + +E D+LAVI
Sbjct: 62 GDKVIYGQYAGSSYKSEGVEYKVLREDDILAVI 94
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP:
b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O*
2c7c_O 2c7d_O
Length = 97
Score = 93.7 bits (234), Expect = 1e-26
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 15 KFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNV 74
RPL DR++V + E TK+ GG+++ A + V+AVG G NGE V V
Sbjct: 2 NIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKV 61
Query: 75 GDKVLLPKF-GGTKIEVEGQELHLFKEADLLAVIE 108
GD V+ G +++ +E+ + E+D+LA++E
Sbjct: 62 GDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVE 96
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP-
binding, DNA-binding; 2.50A {Geobacillus
stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C*
2pjr_B*
Length = 724
Score = 32.9 bits (76), Expect = 0.011
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 40 IPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFG-GTKIEVEGQ 93
IP + + A P P VGD+ K+G GT + V G
Sbjct: 641 IPAHLLETASRRQAGASRPAVSRPQASGAVGSWKVGDRANHRKWGIGTVVSVRGG 695
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor,
leucine rich repeat, receptor ectodomain, signaling
protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B
1shy_B 1ssl_A
Length = 727
Score = 28.4 bits (62), Expect = 0.45
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 13/53 (24%)
Query: 52 VVVAVGPGARTPNGE---YIKPVV-----NVGDKVLLPKFGGTKIEVEGQELH 96
+ + + G T Y+ PV+ G P GGT + + G L+
Sbjct: 615 MSIIISNGHGTTQYSTFSYVDPVITSISPKYG-----PMAGGTLLTLTGNYLN 662
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 1.1
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 9 LRTLSQKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYI 68
LR L Q + L+ ++ E L++ L EK + N + P + TP+ +Y+
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP-SNTPDKDYL 231
Query: 69 K--PV 71
P+
Sbjct: 232 LSIPI 236
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS
antifolate complex, methyltransfe multifunctional
enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB:
3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A*
3kjs_A*
Length = 521
Score = 27.1 bits (60), Expect = 1.2
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 11 TLSQKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPG 59
++ KFRPL R+ V+ LT +P++ ++ ++ +VAV G
Sbjct: 83 SIPPKFRPLPGRLNVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGG 131
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 27.2 bits (61), Expect = 1.3
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 52 VVVAVGPGARTPNGEYIKPVVNVGDKVLL 80
VV V R NGE +KP GD ++
Sbjct: 82 RVVEVNGEKRDLNGELLKP----GDLIVW 106
>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine,
structural genomics, protein structure initiative; HET:
GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4
c.1.9.9
Length = 475
Score = 25.8 bits (57), Expect = 3.2
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKF 83
V + V+ A GP + + ++ D++++P F
Sbjct: 40 VTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGF 75
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 24.9 bits (55), Expect = 6.3
Identities = 7/30 (23%), Positives = 9/30 (30%), Gaps = 9/30 (30%)
Query: 52 VVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81
V +G G VGD V +
Sbjct: 67 TVAELGEGVTG---------FGVGDAVAVY 87
>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK
structural genomics research consortium; 1.55A
{Xanthomonas campestris PV}
Length = 472
Score = 24.9 bits (55), Expect = 7.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81
V+N V+VAV P A V+ D L+P
Sbjct: 40 VSNGVIVAVLPTADARVRFAPARTVSRPDAALMP 73
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 24.5 bits (54), Expect = 8.3
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 9/30 (30%)
Query: 52 VVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81
+ V G + GD V+L
Sbjct: 84 YIEEVAEGVEG---------LEKGDPVILH 104
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 24.7 bits (53), Expect = 8.8
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 76 DKVLLPKFGGTKIEVEGQELHLFKEA 101
D ++ K+++EG EL K A
Sbjct: 329 DDIIDDAPTFIKMDIEGSELSALKGA 354
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein
biosynthesis, NUC binding, amino acid-binding,
ATP-binding, metal-binding; HET: G5A EPE; 1.90A
{Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A*
3hxw_A* 3hxx_A* 3hxy_A*
Length = 441
Score = 24.5 bits (54), Expect = 8.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 14 QKFRPLLDRILVIKDEPLTKTKGGVLIPEKA 44
++F L+R L + DE L K G L E A
Sbjct: 364 EQFARTLERGLALLDEELAKLSGDTLDGETA 394
>2e6x_A TT1592, hypothetical protein TTHA1281; unknown function protein,
NPPSFA, national project on protei structural and
functional analyses; 2.00A {Thermus thermophilus}
Length = 69
Score = 23.5 bits (50), Expect = 9.6
Identities = 13/64 (20%), Positives = 28/64 (43%)
Query: 28 DEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTK 87
++ L G L+ + E + +VV VG + TP + ++N+ + + +
Sbjct: 2 EKDLLDKLGQHLVWRMGRAEDEDVLVVRVGLASATPRFRELPRLLNLPEAEMRRLVQEGR 61
Query: 88 IEVE 91
+ VE
Sbjct: 62 VRVE 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.136 0.375
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,645,502
Number of extensions: 95022
Number of successful extensions: 251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 38
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)