RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12951
         (111 letters)



>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli
           [TaxId: 562]}
          Length = 97

 Score = 97.6 bits (243), Expect = 1e-28
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 15  KFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNV 74
             RPL DR++V + E  TK+ GG+++   A  +     V+AVG G    NGE     V V
Sbjct: 2   NIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKV 61

Query: 75  GDKVLLPKF-GGTKIEVEGQELHLFKEADLLAVIE 108
           GD V+     G    +++ +E+ +  E+D+LA++E
Sbjct: 62  GDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVE 96


>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 99

 Score = 95.3 bits (237), Expect = 9e-28
 Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 1/96 (1%)

Query: 15  KFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPV-VN 73
             +PL D+ILV  +E  T T  G++IP+ A+++     VVAVGPG    +GE   P+ V 
Sbjct: 4   NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVA 63

Query: 74  VGDKVLLPKFGGTKIEVEGQELHLFKEADLLAVIEK 109
            GD V+  K+GGT+I+  G+E  +    D+LAV+ K
Sbjct: 64  EGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK 99


>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus
           [TaxId: 274]}
          Length = 96

 Score = 91.5 bits (227), Expect = 3e-26
 Identities = 38/92 (41%), Positives = 61/92 (66%)

Query: 17  RPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGD 76
           +PL DR++V + E   KTKGG+++P+ A+++     V+AVG G    NG+ +   V  GD
Sbjct: 5   KPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGD 64

Query: 77  KVLLPKFGGTKIEVEGQELHLFKEADLLAVIE 108
            V+  K+GGT+IE++G+E  +  E DLLAV++
Sbjct: 65  IVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 96


>d1e6ya2 d.58.31.2 (A:1002-1283) Alpha chain {Archaeon
           Methanosarcina barkeri [TaxId: 2208]}
          Length = 282

 Score = 26.1 bits (57), Expect = 1.1
 Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 6/98 (6%)

Query: 9   LRTLSQKFRPLLDRILVIKDEPLTKT----KGGVLIPEKAQQEVNNAVVVAVGPGARTPN 64
            + +  KF            +   KT    + G     +  + +     +A   G    N
Sbjct: 9   KKDMEVKFAQEFGSNKQTGGDITDKTAKFLRLGPEQDPRKVEMIKAGKEIAEKRGIAFYN 68

Query: 65  GEYIKPVVNVGDKVLLP-KFGGTKIEVEGQELHLFKEA 101
              +     +G + + P    GT I  E  +LH    A
Sbjct: 69  -PMMHSGAPLGQRAITPYTISGTDIVCEPDDLHYVNNA 105


>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 163

 Score = 24.3 bits (52), Expect = 3.6
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 7/34 (20%)

Query: 48  VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81
           V NA VV    G  T N       V + D VL+P
Sbjct: 135 VGNADVVC--GGVSTANA-----TVYMIDSVLMP 161


>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM
           {Methylobacillus flagellatus [TaxId: 405]}
          Length = 395

 Score = 23.8 bits (51), Expect = 6.4
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 64  NGEYIKPVVNVGDKVLLPKFGGTKIEVEGQELHLFKEA 101
           +       V   D ++       K+++EG EL   K A
Sbjct: 303 HEPADLIDVRPIDDIIDDAPTFIKMDIEGSELSALKGA 340


>d1dmla1 d.131.1.2 (A:29-169) UL42 {Human herpesvirus type 1
          [TaxId: 10298]}
          Length = 141

 Score = 23.2 bits (50), Expect = 8.6
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 3/36 (8%)

Query: 5  AAPKLRTLSQKFRPLLDRILVIKDEPLTKTKGGVLI 40
             +L  + Q F PL      + D  L     G+LI
Sbjct: 8  QGAELNGILQAFAPLRTS---LLDSLLVMGDRGILI 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.136    0.375 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 384,477
Number of extensions: 16523
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 12
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)