BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12953
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 77/119 (64%), Gaps = 5/119 (4%)
Query: 1 MLSRIFLA--FLGFLSLVSCQVE---LPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGI 55
++ R+F A L F S+ S + E P WW++A+ YQ+YPRSF+D NGDG GD +G+
Sbjct: 2 LMKRLFAASLMLAFSSVSSVRAEEAVKPGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGL 61
Query: 56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
TEKLD+ LGI+++WI P Y + D GYD+S+Y +V +G M DF+ L+ E RG
Sbjct: 62 TEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRG 120
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 65/91 (71%)
Query: 24 QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
+K WW+ + YQIYPRSF D NGDG GD+RGI EKLD+ V+LG++ +WI P Y + AD
Sbjct: 2 KKTWWKEGVAYQIYPRSFMDANGDGIGDLRGIIEKLDYLVELGVDIVWICPIYRSPNADN 61
Query: 84 GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYD+S+Y + FG M DF+ L+ +AH RG
Sbjct: 62 GYDISDYYAIMDEFGTMDDFDELLAQAHRRG 92
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 23 PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
P WW++A+ YQ+YPRSF+D NGDG GD +G+TEKLD+ LGI+++WI P Y + D
Sbjct: 2 PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTD 61
Query: 83 LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYD+S+Y +V +G M DF+ L+ E RG
Sbjct: 62 NGYDISDYREVMKEYGTMEDFDRLMAELKKRG 93
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 23 PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
P WW++A+ YQ+YPRSF+D NGDG GD +G+TEKLD+ LGI+++WI P Y + D
Sbjct: 2 PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTD 61
Query: 83 LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYD+S+Y +V +G M DF+ L+ E RG
Sbjct: 62 NGYDISDYREVMKEYGTMEDFDRLMAELKKRG 93
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 23 PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
P WW++A+ YQ+YPRSF+D NGDG GD +G+TEKLD+ LGI+++WI P Y + D
Sbjct: 2 PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTD 61
Query: 83 LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYD+S+Y +V +G M DF+ L+ E RG
Sbjct: 62 NGYDISDYREVMKEYGTMEDFDRLMAELKKRG 93
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 23 PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
P WW++A+ YQ+YPRSF+D NGDG GD +G+TEKLD+ LGI+++WI P Y + D
Sbjct: 1 PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTD 60
Query: 83 LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYD+S+Y +V +G M DF+ L+ E RG
Sbjct: 61 NGYDISDYREVMKEYGTMEDFDRLMAELKKRG 92
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 23 PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
P WW++A+ YQ+YPRSF+D NGDG GD +G+TEKLD+ LGI+++WI P Y + D
Sbjct: 1 PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTD 60
Query: 83 LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYD+S+Y +V +G M DF+ L+ E RG
Sbjct: 61 NGYDISDYREVMKEYGTMEDFDRLMAELKKRG 92
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 23 PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
P WW++A+ YQ+YPRSF+D NGDG GD +G+TEKLD+ LGI+++WI P Y + D
Sbjct: 1 PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTD 60
Query: 83 LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYD+S+Y +V +G M DF+ L+ E RG
Sbjct: 61 NGYDISDYREVMKEYGTMEDFDRLMAELKKRG 92
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 62/99 (62%)
Query: 16 VSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPF 75
+ Q E WW+ A+ YQIYPRSF+D N DG GD+RGI EKLD+ LGI+++WI P
Sbjct: 8 IHVQKESEYPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINPH 67
Query: 76 YPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
Y + D GYD+SNY + +G M DF+ L+ E R
Sbjct: 68 YDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRN 106
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 63/91 (69%)
Query: 24 QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
+K+WW+ +++YQIYPRSF D NGDG GD+RGI KLD+ +LGI+ +W+ P Y + D
Sbjct: 2 EKQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDN 61
Query: 84 GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYD+S+Y + FG M D++ L+ E H R
Sbjct: 62 GYDISDYCKIMNEFGTMEDWDELLHEMHERN 92
>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran
Glucosidase
Length = 543
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 62/91 (68%)
Query: 24 QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
QK WW A +YQIYP+SF D NGDG GD++GIT KLD+ LG+ ++W+ P Y + D
Sbjct: 2 QKHWWHKATVYQIYPKSFMDTNGDGIGDLKGITSKLDYLQKLGVMAIWLSPVYDSPMDDN 61
Query: 84 GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYD++NY + +FG+M D + L+ +A RG
Sbjct: 62 GYDIANYEAIADIFGNMADMDNLLTQAKMRG 92
>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex
With Isomaltotriose
Length = 543
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 62/91 (68%)
Query: 24 QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
QK WW A +YQIYP+SF D NGDG GD++GIT KLD+ LG+ ++W+ P Y + D
Sbjct: 2 QKHWWHKATVYQIYPKSFMDTNGDGIGDLKGITSKLDYLQKLGVMAIWLSPVYDSPMDDN 61
Query: 84 GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYD++NY + +FG+M D + L+ +A RG
Sbjct: 62 GYDIANYEAIADIFGNMADMDNLLTQAKMRG 92
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 102 bits (254), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 62/84 (73%)
Query: 27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYD 86
WW+ A++YQ+YP+SF+D NGDG GD++GI +LD+ LGI+++W+ P Y + G D GYD
Sbjct: 6 WWKNAVVYQVYPKSFQDSNGDGIGDLQGIISRLDYLEKLGIDAIWLSPVYQSPGVDNGYD 65
Query: 87 VSNYVDVDPLFGDMHDFEILIEEA 110
+S+Y +DP +G M D + LI +A
Sbjct: 66 ISDYEAIDPQYGTMADMDELISKA 89
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 59/89 (66%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGY 85
+WW+ A+ YQ+YPRSF+D NGDG GD+ GI EKLD+ LGI+++WI P Y + D GY
Sbjct: 4 KWWKEAVFYQVYPRSFKDTNGDGIGDINGIIEKLDYLKALGIDAIWINPHYDSPNTDNGY 63
Query: 86 DVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
D+ +Y + +G M DF+ LI E R
Sbjct: 64 DIRDYRKIMKEYGTMEDFDRLISEMKKRN 92
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 99.8 bits (247), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 13 LSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWI 72
+++ S E K WW+ A YQIYP SF+D N DG GDM+GI KL++ +LG +++WI
Sbjct: 1 MTISSAHPETEPK-WWKEATFYQIYPASFKDSNDDGWGDMKGIASKLEYIKELGADAIWI 59
Query: 73 QPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
PFY + D+GYD++NY V P +G D LIE+ H G
Sbjct: 60 SPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLG 101
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 99.8 bits (247), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 13 LSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWI 72
+++ S E K WW+ A YQIYP SF+D N DG GDM+GI KL++ +LG +++WI
Sbjct: 1 MTISSAHPETEPK-WWKEATFYQIYPASFKDSNDDGWGDMKGIASKLEYIKELGADAIWI 59
Query: 73 QPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
PFY + D+GYD++NY V P +G D LIE+ H G
Sbjct: 60 SPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLG 101
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 84.3 bits (207), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 32 IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYV 91
I YQ+ SF D +GDG GD+ G+T+KLD+ LG+++LW+ P +P GYDV++Y
Sbjct: 39 ISYQLLLYSFADSDGDGYGDLNGVTQKLDYLNQLGVKALWLSPIHPCXSYH-GYDVTDYT 97
Query: 92 DVDPLFGDMHDFEILIEEAHSRG 114
V+P G DF+ L+ EAH+RG
Sbjct: 98 KVNPQLGTESDFDRLVTEAHNRG 120
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 84.0 bits (206), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 32 IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYV 91
I YQ+ SF D +GDG GD+ G+T+KLD+ LG+++LW+ P +P GYDV++Y
Sbjct: 39 ISYQLLLYSFADSDGDGYGDLNGVTQKLDYLNQLGVKALWLSPIHPCMSYH-GYDVTDYT 97
Query: 92 DVDPLFGDMHDFEILIEEAHSRG 114
V+P G DF+ L+ EAH+RG
Sbjct: 98 KVNPQLGTESDFDRLVTEAHNRG 120
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 9/94 (9%)
Query: 29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHF--------VDLGIESLWIQPFYPAGG 80
+ Y+I+ RSF D +GDG GD++GI EKLD+ DLG+ +W+ P + +
Sbjct: 3 KHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPS 62
Query: 81 ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYDV++Y ++P +G + DF L+E AH RG
Sbjct: 63 YH-GYDVTDYYKINPDYGTLEDFHKLVEAAHQRG 95
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
EW + A++YQI+P F NGD GT GD++G+ ++L +
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64 DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
+LG+ +L+ P + A + YD ++Y+ +DP FGD+ F L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
EW + A++YQI+P F NGD GT GD++G+ ++L +
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64 DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
+LG+ +L+ P + A + YD ++Y+ +DP FGD+ F L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
EW + A++YQI+P F NGD GT GD++G+ ++L +
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64 DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
+LG+ +L+ P + A + YD ++Y+ +DP FGD+ F L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
EW + A++YQI+P F NGD GT GD++G+ ++L +
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64 DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
+LG+ +L+ P + A + YD ++Y+ +DP FGD+ F L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
EW + A++YQI+P F NGD GT GD++G+ ++L +
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64 DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
+LG+ +L+ P + A + YD ++Y+ +DP FGD+ F L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
EW + A++YQI+P F NGD GT GD++G+ ++L +
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64 DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
+LG+ +L+ P + A + YD ++Y+ +DP FGD+ F L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
EW + A++YQI+P F NGD GT GD++G+ ++L +
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64 DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
+LG+ +L+ P + A + YD ++Y+ +DP FGD+ F L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
EW + A++YQI+P F NGD GT GD++G+ ++L +
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64 DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
+LG+ +L+ P + A + YD ++Y+ +DP FGD+ F L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
EW + A++YQI+P F NGD GT GD++G+ ++L +
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64 DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
+LG+ +L+ P + A + YD ++Y+ +DP FGD+ F L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 32 IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYV 91
I YQIY RSFRD N DG GD RG+ + + +LGI+ +W+ P + + GYDV ++
Sbjct: 2 IGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSISFH-GYDVVDFY 60
Query: 92 DVDPLFGDMHDFEILIEEAHSRG 114
+G +F+ +IE H G
Sbjct: 61 SFKAEYGSEREFKEMIEAFHDSG 83
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 20/108 (18%)
Query: 26 EWWQTAIMYQIYPRSFRD----VNGDGT---------------GDMRGITEKLDHFVDLG 66
+W + + YQI+P F + ++ +G+ GD++GI + LD+ VDLG
Sbjct: 130 DWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLG 189
Query: 67 IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
I +++ P + ++ YD ++Y +VDP FGD + LI+ H +G
Sbjct: 190 ITGIYLTPIF-RSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKG 236
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 20/108 (18%)
Query: 26 EWWQTAIMYQIYPRSFRD----VNGDGT---------------GDMRGITEKLDHFVDLG 66
+W + + YQI+P F + ++ +G+ GD++GI + LD+ VDLG
Sbjct: 130 DWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLG 189
Query: 67 IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
I +++ P + ++ YD ++Y +VDP FGD + LI+ H +G
Sbjct: 190 ITGIYLTPIF-RSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKG 236
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 27 WWQTAIMYQIYPRSFRDVNGD------GT---------------GDMRGITEKLDHFVDL 65
W + AI YQI+P F NGD GT GD++G+ + LDH L
Sbjct: 127 WVKDAIFYQIFPERF--ANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKL 184
Query: 66 GIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTK 125
G+ +++ P + A + YD +Y +DP FGD + L++ H RG R +
Sbjct: 185 GVNAVYFTPLFKAT-TNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERG-----IRVLLD 238
Query: 126 SFANNQGR 133
+ N+ GR
Sbjct: 239 AVFNHSGR 246
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 20/108 (18%)
Query: 26 EWWQTAIMYQIYPRSFRDVNG-------------DGT------GDMRGITEKLDHFVDLG 66
+W + + YQI+P F + N D T GD++GI + LD+ DLG
Sbjct: 130 DWVKDTVWYQIFPERFANGNPAISPKGARPWGSEDPTPTSFFGGDLQGIIDHLDYLADLG 189
Query: 67 IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
I +++ P + A ++ YD ++Y ++DP FGD + L++ H +G
Sbjct: 190 ITGIYLTPIFRAP-SNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKG 236
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 20/108 (18%)
Query: 26 EWWQTAIMYQIYPRSFRDVNG-------------DGT------GDMRGITEKLDHFVDLG 66
+W + + YQI+P F + N D T GD++GI + LD+ DLG
Sbjct: 130 DWVKDTVWYQIFPERFANGNPAISPKGARPWGSEDPTPTSFFGGDLQGIIDHLDYLADLG 189
Query: 67 IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
I +++ P + A ++ YD ++Y ++DP FGD + L++ H +G
Sbjct: 190 ITGIYLTPIFRAP-SNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKG 236
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 24 QKEWWQTAIMYQIYPRSFR--DVNGDGT---------------GDMRGITEKLDHFVDLG 66
+ W+ + YQI+ SF D N D GD+ GI + +DH DLG
Sbjct: 219 KPRWYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDLAGIMKHIDHLEDLG 278
Query: 67 IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+E++++ P + + YD +Y +D G M DFE L++ HSR
Sbjct: 279 VETIYLTPIFSSTSYH-RYDTIDYKSIDKYLGTMEDFEKLVQVLHSR 324
>pdb|2DH3|A Chain A, Crystal Structure Of Human Ed-4f2hc
pdb|2DH3|B Chain B, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 21 ELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG 80
ELP ++WW T +Y+I + G G G++ G+ +LD+ L ++ L + P +
Sbjct: 6 ELPAQKWWHTGALYRI--GDLQAFQGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQK 63
Query: 81 ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSF 127
D+ ++ + +DP FG DF+ L++ A + K R ++T ++
Sbjct: 64 DDVAQ--TDLLQIDPNFGSKEDFDSLLQSA--KKKSIRVILDLTPNY 106
>pdb|2DH2|A Chain A, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 21 ELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG 80
ELP ++WW T +Y+I + G G G++ G+ +LD+ L ++ L + P +
Sbjct: 6 ELPAQKWWHTGALYRI--GDLQAFQGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQK 63
Query: 81 ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSF 127
D+ ++ + +DP FG DF+ L++ A + K R ++T ++
Sbjct: 64 DDVAQ--TDLLQIDPNFGSKEDFDSLLQSA--KKKSIRVILDLTPNY 106
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 49 TGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
GD++G+ +K+ +F +LG+ L++ P + P G +D GY VS+Y DV+P G + D +
Sbjct: 109 AGDLKGLKDKIPYFQELGLTYLYLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
Query: 107 IEEAHSRG 114
I H G
Sbjct: 169 IAALHEAG 176
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 49 TGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
GD++G+ +K+ +F +LG+ L++ P + P G +D GY VS+Y DV+P G + D +
Sbjct: 109 AGDLKGLKDKIPYFQELGLTYLYLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
Query: 107 IEEAHSRG 114
I H G
Sbjct: 169 IAALHEAG 176
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 27/128 (21%)
Query: 27 WWQTAIMYQIYPRSF---------------------RDVNGDGTGDMRGITEKLDHFVDL 65
W++ A YQI+P F + G G + G+ EKL + +DL
Sbjct: 3 WYEGAFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTLWGVAEKLPYLLDL 62
Query: 66 GIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTK 125
G+E++++ P + A A+ Y +Y VDP+ G L+E AH+ G R +
Sbjct: 63 GVEAIYLNPVF-ASTANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHG-----VRVILD 116
Query: 126 SFANNQGR 133
N+ GR
Sbjct: 117 GVFNHTGR 124
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 49 TGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
GD++G+ +K+ +F +LG+ L + P + P G +D GY VS+Y DV+P G + D +
Sbjct: 109 AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
Query: 107 IEEAHSRG 114
I H G
Sbjct: 169 IAALHEAG 176
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 49 TGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
GD++G+ +K+ +F +LG+ L + P + P G +D GY VS+Y DV+P G + D +
Sbjct: 109 AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
Query: 107 IEEAHSRG 114
I H G
Sbjct: 169 IAALHEAG 176
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 49 TGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
GD++G+ +K+ +F +LG+ L + P + P G +D GY VS+Y DV+P G + D +
Sbjct: 109 AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
Query: 107 IEEAHSRG 114
I H G
Sbjct: 169 IAALHEAG 176
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 49 TGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
GD++G+ +K+ +F +LG+ L + P + P G +D GY VS+Y DV+P G + D +
Sbjct: 109 AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
Query: 107 IEEAHSRG 114
I H G
Sbjct: 169 IAALHEAG 176
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 49 TGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
GD++G+ +K+ +F +LG+ L + P + P G +D GY VS+Y DV+P G + D +
Sbjct: 113 AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREV 172
Query: 107 IEEAHSRG 114
I H G
Sbjct: 173 IAALHEAG 180
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 49 TGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
GD++G+ +K+ +F +LG+ L + P + P G +D GY VS+Y DV+P G + D +
Sbjct: 109 AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
Query: 107 IEEAHSRG 114
I H G
Sbjct: 169 IAALHEAG 176
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 25/118 (21%)
Query: 18 CQVELPQKEWWQTAIMYQIYPRSFR----------------------DVNGDGTGDMRGI 55
Q++ P +W + A+ YQI+P F + G GD+ GI
Sbjct: 1 MQIQTP--DWVKHAVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGI 58
Query: 56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
E LD+ +LGI +++ P + + ++ Y +Y VDP+ G F+ L++ AH R
Sbjct: 59 MEDLDYIQNLGINAIYFTPIFQS-ASNHRYHTHDYYQVDPMLGGNEAFKELLDAAHQR 115
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 13 LSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWI 72
+SL Q +L + ++Y ++ R++ + G+ G+T L DLG + LW+
Sbjct: 1 MSLRDTQTQL------RNEMIYSVFVRNYSEA-----GNFAGVTADLQRIKDLGTDILWL 49
Query: 73 QPFYPAGGAD----LG--YDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
P P G + LG Y + +Y ++P +G + DF+ L + AH G
Sbjct: 50 LPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHELG 97
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 40/150 (26%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQ++ F D N D T GD +G+ K++ +F D
Sbjct: 9 KQSFSTDVIYQVFTDRFLDGNPSNNPTGAAYDATCSNLKLYCGGDWQGLINKINDNYFSD 68
Query: 65 LGIESLWI-QPFYP----------AGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
LG+ +LWI QP A GY ++ +P FG M DF+ LI AH++
Sbjct: 69 LGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPYFGTMADFQNLITTAHAK 128
Query: 114 G-------KPKRT--FREVTKSFANNQGRY 134
G P T E SFA N Y
Sbjct: 129 GIKIVIDFAPNHTSPAMETDTSFAENGRLY 158
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 40/150 (26%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQ++ F D N D T GD +G+ K++ +F D
Sbjct: 9 KQSFSTDVIYQVFTDRFLDGNPSNNPTGAAYDATCSNLKLYCGGDWQGLINKINDNYFSD 68
Query: 65 LGIESLWI-QPFYP----------AGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
LG+ +LWI QP A GY ++ +P FG M DF+ LI AH++
Sbjct: 69 LGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPYFGTMADFQNLITTAHAK 128
Query: 114 G-------KPKRT--FREVTKSFANNQGRY 134
G P T E SFA N Y
Sbjct: 129 GIKIVIDFAPNHTSPAMETDTSFAENGRLY 158
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 40/150 (26%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQ++ F D N D T GD +G+ K++ +F D
Sbjct: 9 KQSFSTDVIYQVFTDRFLDGNPSNNPTGAAYDATCSNLKLYCGGDWQGLINKINDNYFSD 68
Query: 65 LGIESLWI-QPFYP----------AGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
LG+ +LWI QP A GY ++ +P FG M DF+ LI AH++
Sbjct: 69 LGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPYFGTMADFQNLITTAHAK 128
Query: 114 G-------KPKRT--FREVTKSFANNQGRY 134
G P T E SFA N Y
Sbjct: 129 GIKIVIDFAPNHTSPAMETDTSFAENGRLY 158
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 40/150 (26%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQ++ F D N D T GD +G+ K++ +F D
Sbjct: 9 KQSFSTDVIYQVFTDRFLDGNPSNNPTGAAYDATCSNLKLYCGGDWQGLINKINDNYFSD 68
Query: 65 LGIESLWI-QPFYP----------AGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
LG+ +LWI QP A GY ++ +P FG M DF+ LI AH++
Sbjct: 69 LGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPYFGTMADFQNLITTAHAK 128
Query: 114 G-------KPKRT--FREVTKSFANNQGRY 134
G P T E SFA N Y
Sbjct: 129 GIKIVIDFAPNHTSPAMETDTSFAENGRLY 158
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 31/121 (25%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQ++ F D N D T GD +G+ K++ +F D
Sbjct: 9 KQSFSTDVIYQVFTDRFLDGNPSNNPTGAAYDATCSNLKLYCGGDWQGLINKINDNYFSD 68
Query: 65 LGIESLWI-QPFYP----------AGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
LG+ +LWI QP A GY ++ +P FG M DF+ LI AH++
Sbjct: 69 LGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPYFGTMADFQNLITTAHAK 128
Query: 114 G 114
G
Sbjct: 129 G 129
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 19 QVELPQKEWWQTAIMYQIYPRSF---RDVNGDGT-------GDMRGITEKLDHFVDLGIE 68
+E P W + YQI P F R + G GD+ GI EK+DH V+LGI
Sbjct: 197 SIEFPT--WVIDRVFYQIMPDKFARSRKIQGIAYPKDKYWGGDLIGIKEKIDHLVNLGIN 254
Query: 69 SLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEE 109
++++ P + + GYD+ +Y V G F L+ E
Sbjct: 255 AIYLTPIFSSLTYH-GYDIVDYFHVARRLGGDRAFVDLLSE 294
>pdb|1IZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase 1 Mutant
Enzyme W398v
Length = 637
Score = 45.8 bits (107), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 42/126 (33%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDGT------------------------------------ 49
+W + +MYQI+P F NGD +
Sbjct: 128 DWLKNGVMYQIFPDRF--YNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVF 185
Query: 50 --GDMRGITEKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
GD+ GI +KL + LG L++ P + A + YD +Y+ VDP FGD + L
Sbjct: 186 FGGDLAGIDQKLGYIKKTLGANILYLNPIFKAP-TNHKYDTQDYMAVDPAFGDNSTLQTL 244
Query: 107 IEEAHS 112
I + HS
Sbjct: 245 INDIHS 250
>pdb|1IZJ|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1 Mutant
Enzyme F313a
Length = 637
Score = 45.4 bits (106), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 42/126 (33%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDGT------------------------------------ 49
+W + +MYQI+P F NGD +
Sbjct: 128 DWLKNGVMYQIFPDRF--YNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVF 185
Query: 50 --GDMRGITEKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
GD+ GI +KL + LG L++ P + A + YD +Y+ VDP FGD + L
Sbjct: 186 FGGDLAGIDQKLGYIKKTLGANILYLNPIFKAP-TNHKYDTQDYMAVDPAFGDNSTLQTL 244
Query: 107 IEEAHS 112
I + HS
Sbjct: 245 INDIHS 250
>pdb|2D0F|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356n Complexed With P2,
A Pullulan Model Oligosaccharide
Length = 637
Score = 45.4 bits (106), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 42/126 (33%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDGT------------------------------------ 49
+W + +MYQI+P F NGD +
Sbjct: 128 DWLKNGVMYQIFPDRF--YNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVF 185
Query: 50 --GDMRGITEKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
GD+ GI +KL + LG L++ P + A + YD +Y+ VDP FGD + L
Sbjct: 186 FGGDLAGIDQKLGYIKKTLGANILYLNPIFKAP-TNHKYDTQDYMAVDPAFGDNSTLQTL 244
Query: 107 IEEAHS 112
I + HS
Sbjct: 245 INDIHS 250
>pdb|1UH2|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseMALTO-Hexaose
Complex
pdb|1UH4|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1MALTO-
Tridecaose Complex
pdb|2D0G|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
P5, A Pullulan Model Oligosaccharide
pdb|2D0H|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
P2, A Pullulan Model Oligosaccharide
Length = 637
Score = 45.4 bits (106), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 42/126 (33%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDGT------------------------------------ 49
+W + +MYQI+P F NGD +
Sbjct: 128 DWLKNGVMYQIFPDRF--YNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVF 185
Query: 50 --GDMRGITEKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
GD+ GI +KL + LG L++ P + A + YD +Y+ VDP FGD + L
Sbjct: 186 FGGDLAGIDQKLGYIKKTLGANILYLNPIFKAP-TNHKYDTQDYMAVDPAFGDNSTLQTL 244
Query: 107 IEEAHS 112
I + HS
Sbjct: 245 INDIHS 250
>pdb|1JI1|A Chain A, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1JI1|B Chain B, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1UH3|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseACARBOSE
Complex
Length = 637
Score = 45.4 bits (106), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 42/126 (33%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDGT------------------------------------ 49
+W + +MYQI+P F NGD +
Sbjct: 128 DWLKNGVMYQIFPDRF--YNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVF 185
Query: 50 --GDMRGITEKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
GD+ GI +KL + LG L++ P + A + YD +Y+ VDP FGD + L
Sbjct: 186 FGGDLAGIDQKLGYIKKTLGANILYLNPIFKAP-TNHKYDTQDYMAVDPAFGDNSTLQTL 244
Query: 107 IEEAHS 112
I + HS
Sbjct: 245 INDIHS 250
>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical
Maltooligosyl Trehalose Synthase
Length = 704
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 55 ITEKLDHFVDLGIESLWIQPFYPAG-GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
I +LD+FV+LG+ L++ P A G+ GYDV +Y ++ G ++ LI+EA S+
Sbjct: 17 IRNRLDYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTINDELGGEEEYIRLIDEAKSK 76
Query: 114 G 114
G
Sbjct: 77 G 77
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 32 IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPF--YPAGGADLGYDVSN 89
I+Y+I+ +F G G+ KLD+ DLGI ++ I P +P G D GYD
Sbjct: 103 IIYEIHVGTFTP-----EGTFEGVIRKLDYLKDLGITAIEIMPIAQFP-GKRDWGYDGVY 156
Query: 90 YVDVDPLFGDMHDFEILIEEAHSRG 114
V +G F L++EAH +G
Sbjct: 157 LYAVQNSYGGPEGFRKLVDEAHKKG 181
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 32 IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPF--YPAGGADLGYDVSN 89
I+Y+I+ +F G G+ KLD+ DLGI ++ I P +P G D GYD
Sbjct: 103 IIYEIHVGTFTP-----EGTFEGVIRKLDYLKDLGITAIEIMPIAQFP-GKRDWGYDGVY 156
Query: 90 YVDVDPLFGDMHDFEILIEEAHSRG 114
V +G F L++EAH +G
Sbjct: 157 LYAVQNSYGGPEGFRKLVDEAHKKG 181
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 32 IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPF--YPAGGADLGYDVSN 89
I+Y+I+ +F G G+ KLD+ DLGI ++ I P +P G D GYD
Sbjct: 103 IIYEIHVGTFTP-----EGTFEGVIRKLDYLKDLGITAIEIMPIAQFP-GKRDWGYDGVY 156
Query: 90 YVDVDPLFGDMHDFEILIEEAHSRG 114
V +G F L++EAH +G
Sbjct: 157 LYAVQNSYGGPEGFRKLVDEAHKKG 181
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 32 IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPF--YPAGGADLGYDVSN 89
I+Y+I+ +F G G+ KLD+ DLGI ++ I P +P G D GYD
Sbjct: 103 IIYEIHVGTFTP-----EGTFEGVIRKLDYLKDLGITAIEIMPIAQFP-GKRDWGYDGVY 156
Query: 90 YVDVDPLFGDMHDFEILIEEAHSRG 114
V +G F L++EAH +G
Sbjct: 157 LYAVQNSYGGPEGFRKLVDEAHKKG 181
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 32 IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPF--YPAGGADLGYDVSN 89
I+Y+I+ +F G G+ KLD+ DLGI ++ I P +P G D GYD
Sbjct: 103 IIYEIHVGTFTP-----EGTFEGVIRKLDYLKDLGITAIEIMPIAQFP-GKRDWGYDGVY 156
Query: 90 YVDVDPLFGDMHDFEILIEEAHSRG 114
V +G F L++EAH +G
Sbjct: 157 LYAVQNSYGGPEGFRKLVDEAHKKG 181
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 50 GDMRGITEKLDHFVDLGIESLWIQPFYP-----AGGADLGYD---VSNYVDVDPLFGDMH 101
GD+ G+ +KL + LG+ ++W+ P AG + GY ++ ++ FG+
Sbjct: 49 GDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWT 108
Query: 102 DFEILIEEAHSRG 114
F+ L+ +AH G
Sbjct: 109 TFDTLVNDAHQNG 121
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 40.8 bits (94), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 31/119 (26%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DG+ GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QP---FYPA-------GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHS 112
+GI ++WI QP Y A GY ++ +P +G M DF+ LI+ AH+
Sbjct: 69 MGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHA 127
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 12/77 (15%)
Query: 50 GDMRGITEKLD--HFVDLGIESLWI-QPFY--------PAGGADL-GYDVSNYVDVDPLF 97
GD +GI K++ + D+G+ ++WI QP +G A GY ++ +P F
Sbjct: 49 GDWQGIINKINDGYLTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFF 108
Query: 98 GDMHDFEILIEEAHSRG 114
G + DF+ L++ AH++G
Sbjct: 109 GTLSDFQRLVDAAHAKG 125
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 31/119 (26%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DG+ GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QP---FYPA-------GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHS 112
+GI ++WI QP Y A GY ++ +P +G M DF+ LI+ AH+
Sbjct: 69 MGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHA 127
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 31/119 (26%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DG+ GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QP---FYPA-------GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHS 112
+GI ++WI QP Y A GY ++ +P +G M DF+ LI+ AH+
Sbjct: 69 MGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHA 127
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 31/119 (26%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DG+ GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QP---FYPA-------GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHS 112
+GI ++WI QP Y A GY ++ +P +G M DF+ LI+ AH+
Sbjct: 69 MGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHA 127
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 31/119 (26%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DG+ GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QP---FYPA-------GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHS 112
+GI ++WI QP Y A GY ++ +P +G M DF+ LI+ AH+
Sbjct: 69 MGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHA 127
>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis
pdb|3UER|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis In Complex With Turanose
Length = 655
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPA--GGADLGYDVSNYVDVDPLFGDMHDFEIL 106
G ++G+ E+LD+ LG++ L + P G D GY V +Y V P G M D L
Sbjct: 107 AGTLKGVEERLDYLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVRPDLGTMDDLSAL 166
Query: 107 IEEAHSRG 114
RG
Sbjct: 167 ARALRGRG 174
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAG----GADLG 84
+ I+Y+ + R++ G+ + + L+ +GI ++W+ P +P G LG
Sbjct: 4 KNLIIYEAFARAY---PGEKGKKFLSLEKDLERLKGMGINTVWLMPIHPTGVEGRKGTLG 60
Query: 85 --YDVSNYVDVDPLFGDMHDFEILIEEAHS 112
Y + +Y ++D L G DF+ ++ AH
Sbjct: 61 SPYAIRDYYEIDLLIGTKGDFKKFVKRAHE 90
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DGT GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+G+ ++WI QP Y A GY ++ +P +G + DF+ LI AH++
Sbjct: 69 MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DGT GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+G+ ++WI QP Y A GY ++ +P +G + DF+ LI AH++
Sbjct: 69 MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DGT GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+G+ ++WI QP Y A GY ++ +P +G + DF+ LI AH++
Sbjct: 69 MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DGT GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+G+ ++WI QP Y A GY ++ +P +G + DF+ LI AH++
Sbjct: 69 MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DGT GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+G+ ++WI QP Y A GY ++ +P +G + DF+ LI AH++
Sbjct: 69 MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DGT GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+G+ ++WI QP Y A GY ++ +P +G + DF+ LI AH++
Sbjct: 69 MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DGT GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+G+ ++WI QP Y A GY ++ +P +G + DF+ LI AH++
Sbjct: 69 MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DGT GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+G+ ++WI QP Y A GY ++ +P +G + DF+ LI AH++
Sbjct: 69 MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DGT GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+G+ ++WI QP Y A GY ++ +P +G + DF+ LI AH++
Sbjct: 69 MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DGT GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+G+ ++WI QP Y A GY ++ +P +G + DF+ LI AH++
Sbjct: 69 MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DGT GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+G+ ++WI QP Y A GY ++ +P +G + DF+ LI AH++
Sbjct: 69 MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DGT GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+G+ ++WI QP Y A GY ++ +P +G + DF+ LI AH++
Sbjct: 69 MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 39.3 bits (90), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DGT GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+G+ ++WI QP Y A GY ++ +P +G + DF+ LI AH++
Sbjct: 69 MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128
>pdb|2WPG|A Chain A, Sucrose Hydrolase
Length = 637
Score = 39.3 bits (90), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 50 GDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
G +RG+ E++ + +LG+ L + PF AG D G+ VS+Y V+P G D L
Sbjct: 104 GTLRGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPALGSNDDLVAL 162
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 39.3 bits (90), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DGT GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+G+ ++WI QP Y A GY ++ +P +G + DF+ LI AH++
Sbjct: 69 MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 39.3 bits (90), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DGT GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QP---FYPA-------GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+G+ ++WI QP Y A GY ++ +P +G + DF+ LI AH++
Sbjct: 69 MGVTAIWISQPVENIYSIINDSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 38.9 bits (89), Expect = 0.001, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DGT GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFNDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+G+ ++WI QP Y A GY ++ +P +G + DF+ LI AH++
Sbjct: 69 MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 43/125 (34%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
K+ + T ++YQI+ F D N DG+ GD +GI K++ +
Sbjct: 9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65 LGIESLWI-QPFYPAGGADLGYDVSNYVDVD----------------PLFGDMHDFEILI 107
+GI ++WI QP + Y V NY V+ P +G M DF+ LI
Sbjct: 69 MGITAIWISQP------VENIYSVINYSGVNNTAYHGLWARDFKKTNPAYGTMQDFKNLI 122
Query: 108 EEAHS 112
+ AH+
Sbjct: 123 DTAHA 127
>pdb|1IV8|A Chain A, Crystal Structure Of Maltooligosyl Trehalose Synthase
Length = 720
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 55 ITEKLDHFVDLGIESLWIQPFYPAG-GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+ + L +F DLG+ L++ P A G++ GYDV ++ ++ G ++ LIE AH+
Sbjct: 19 VIDNLWYFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTI 78
Query: 114 G 114
G
Sbjct: 79 G 79
>pdb|3CZK|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Sucrose Complex
pdb|3CZL|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Glucose Complex
Length = 644
Score = 37.4 bits (85), Expect = 0.003, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 50 GDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEILI 107
G ++G+ E++ + +LG+ L + PF AG D G+ VS+Y V+P G D L
Sbjct: 103 GTLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALT 162
Query: 108 EEAHSRG 114
G
Sbjct: 163 SRLREAG 169
>pdb|3CZE|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase (Suh)-
Tris Complex
pdb|3CZG|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase (Suh)-
Glucose Complex
Length = 644
Score = 37.4 bits (85), Expect = 0.003, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 50 GDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEILI 107
G ++G+ E++ + +LG+ L + PF AG D G+ VS+Y V+P G D L
Sbjct: 103 GTLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALT 162
Query: 108 EEAHSRG 114
G
Sbjct: 163 SRLREAG 169
>pdb|3EDF|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDF|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 26/106 (24%)
Query: 33 MYQIYPRSFRDVNGDGTGD----MR-----------------GITEKLDHFVDLGIESLW 71
+YQI P F NGD + D MR G + LD+ LG LW
Sbjct: 109 IYQIMPDRF--ANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIAGLGFTQLW 166
Query: 72 IQPFYPAGGADL---GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
P A GY +++ +DP +G DF L EA RG
Sbjct: 167 PTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRG 212
>pdb|3EDD|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDD|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 26/106 (24%)
Query: 33 MYQIYPRSFRDVNGDGTGD----MR-----------------GITEKLDHFVDLGIESLW 71
+YQI P F NGD + D MR G + LD+ LG LW
Sbjct: 109 IYQIMPDRF--ANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIAGLGFTQLW 166
Query: 72 IQPFYPAGGADL---GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
P A GY +++ +DP +G DF L EA RG
Sbjct: 167 PTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRG 212
>pdb|3EDE|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDE|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 26/106 (24%)
Query: 33 MYQIYPRSFRDVNGDGTGD----MR-----------------GITEKLDHFVDLGIESLW 71
+YQI P F NGD + D MR G + LD+ LG LW
Sbjct: 109 IYQIMPDRF--ANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIAGLGFTQLW 166
Query: 72 IQPFYPAGGADL---GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
P A GY +++ +DP +G DF L EA RG
Sbjct: 167 PTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRG 212
>pdb|1H3G|A Chain A, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
pdb|1H3G|B Chain B, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
Length = 601
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 41/106 (38%), Gaps = 26/106 (24%)
Query: 33 MYQIYPRSFRDVNGDGTGD---------------------MRGITEKLDHFVDLGIESLW 71
+YQI P F NGD + D +RG + LD+ LG LW
Sbjct: 109 IYQIXPDRF--ANGDPSNDNVAGXREQADRRHGGGRHGGDIRGTIDHLDYIAGLGFTQLW 166
Query: 72 IQPFYPAGGADL---GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
P A GY +++ +DP +G DF L EA RG
Sbjct: 167 PTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRG 212
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 28 WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGA-DLGYD 86
W+ A++Y+++ +F G R KL + +LG+ + + P GG GYD
Sbjct: 134 WEQAVVYEMHTGTFTP-----EGTFRAAIAKLPYLAELGVTVIEVMPVAQFGGERGWGYD 188
Query: 87 VSNYVDVDPLFGDMHDFEILIEEAHSRG 114
+G DF+ I+ AH G
Sbjct: 189 GVLLYAPHSAYGTPDDFKAFIDAAHGYG 216
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 35.0 bits (79), Expect = 0.013, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 19/106 (17%)
Query: 28 WQTAIMYQIYPRSFRDVNGDGT------------GDMRGITEKLDHFVDLGIESLWIQPF 75
W++ +Y + F +G T G +GI +KLD+ +G ++WI P
Sbjct: 6 WRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPV 65
Query: 76 YPA-------GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
G A GY ++ ++ +G D + L H RG
Sbjct: 66 TAQLPQDCAYGDAYTGYWQTDIYSLNENYGTADDLKALSSALHERG 111
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 35.0 bits (79), Expect = 0.014, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 50 GDMRGITEKLDHFVDLGIESLWIQPF---YPAGGAD----LGYDVSNYVDVDPLFGDMHD 102
G +GI + LD+ +G ++WI P P AD GY DV+ FG +
Sbjct: 40 GSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADN 99
Query: 103 FEILIEEAHSRG 114
+ L + H+RG
Sbjct: 100 LKSLSDALHARG 111
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 34.7 bits (78), Expect = 0.016, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 32/117 (27%)
Query: 28 WQTAIMYQIYPRSFRDVNGDGT------------------GDMRGITEKLD--HFVDLGI 67
+ T ++YQI F D N GD +GI K++ + +G+
Sbjct: 12 YSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLTGMGV 71
Query: 68 ESLWIQ----------PFYPAGGADL--GYDVSNYVDVDPLFGDMHDFEILIEEAHS 112
++WI P GG+ GY ++ +P FG DF+ LI AH+
Sbjct: 72 TAIWISQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHA 128
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 34.3 bits (77), Expect = 0.023, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 32/117 (27%)
Query: 28 WQTAIMYQIYPRSFRDVNGDGT------------------GDMRGITEKLD--HFVDLGI 67
+ T ++YQI F D N GD +GI K++ + +G+
Sbjct: 12 YSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLTGMGV 71
Query: 68 ESLWIQ----------PFYPAGGADL--GYDVSNYVDVDPLFGDMHDFEILIEEAHS 112
++WI P GG+ GY ++ +P FG DF+ LI AH+
Sbjct: 72 TAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHA 128
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 33.9 bits (76), Expect = 0.032, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 19/106 (17%)
Query: 28 WQTAIMYQIYPRSFRDVNGDGT------------GDMRGITEKLDHFVDLGIESLWIQPF 75
W++ +Y + F +G T G +GI +KLD+ +G ++WI P
Sbjct: 6 WRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPV 65
Query: 76 YPA-------GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
G A GY + ++ +G D + L H RG
Sbjct: 66 TAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERG 111
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei In
Complex With Acarbose
Length = 435
Score = 32.3 bits (72), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 16/87 (18%)
Query: 41 FRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA----GGADLGYDVSNYVD---- 92
+ DV G G I K+ + + GI ++W+ P P+ GG +GYD +Y D
Sbjct: 17 YWDVPGGGIW-WDHIRSKIPEWYEAGISAIWLPP--PSKGMSGGYSMGYDPYDYFDLGEY 73
Query: 93 -----VDPLFGDMHDFEILIEEAHSRG 114
V+ FG + LI+ AH+ G
Sbjct: 74 YQKGTVETRFGSKEELVRLIQTAHAYG 100
>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant
Length = 435
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 55 ITEKLDHFVDLGIESLWIQPFYPA-GGA-DLGYDVSNYVD---------VDPLFGDMHDF 103
I +K+ + D GI ++WI P GGA +GYD ++ D V+ FG +
Sbjct: 30 IRQKIPEWYDAGISAIWIPPASKGMGGAYSMGYDPYDFFDLGEYDQKGTVETRFGSKQEL 89
Query: 104 EILIEEAHSRG 114
+I AH+ G
Sbjct: 90 VNMINTAHAYG 100
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 81 ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFANNQ 131
A GY V+N+ V G D + L+++AHS G R +V S A+N
Sbjct: 231 ASFGYHVTNFFAVSSRSGTPEDLKYLVDKAHSLG--LRVLMDVVHSHASNN 279
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 81 ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFANNQ 131
A GY V+N+ V G D + L+++AHS G R +V S A+N
Sbjct: 231 ASFGYHVTNFFAVSSRSGTPEDLKYLVDKAHSLG--LRVLMDVVHSHASNN 279
>pdb|2GSN|A Chain A, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE
pdb|2GSN|B Chain B, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE
pdb|2GSO|A Chain A, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE IN COMPLEX WITH
VANADATE
pdb|2GSO|B Chain B, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE IN COMPLEX WITH
VANADATE
pdb|2GSU|A Chain A, Structure Of Xac Nucleotide
Pyrophosphatase/phosphodiesterase In Complex With Amp
pdb|2GSU|B Chain B, Structure Of Xac Nucleotide
Pyrophosphatase/phosphodiesterase In Complex With Amp
pdb|2RH6|A Chain A, Structure Of Xac Npp For Evaluation Of Refinement
Methodology
pdb|2RH6|B Chain B, Structure Of Xac Npp For Evaluation Of Refinement
Methodology
Length = 393
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 53 RGITEKLDHFVDLGIESLWIQPFYPA 78
RGIT L H G+ + W+ P YP+
Sbjct: 24 RGITPNLSHLAREGVRARWMAPSYPS 49
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 31 AIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGA-DLGYDVSN 89
+ Y+++ +F G R EKL + +LG+ ++ + P G GYD +
Sbjct: 127 CVFYEVHVGTFTP-----EGTYRAAAEKLPYLKELGVTAIQVXPLAAFDGQRGWGYDGAA 181
Query: 90 YVDVDPLFGDMHDFEILIEEAHSRG 114
+ +G D L++ AH G
Sbjct: 182 FYAPYAPYGRPEDLXALVDAAHRLG 206
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 28.9 bits (63), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 33/119 (27%)
Query: 29 QTAIMYQIYPRSFRD---VNGDGT---GDMRGITEKLDHFVDLGIESLWIQPF------- 75
+ A++Y+ + R F + D T G EKLD+ DLG+ + + P
Sbjct: 151 EDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVN 210
Query: 76 ----------YPAGGADL--GYDVSNYVDVDPLFGD--------MHDFEILIEEAHSRG 114
Y + ++ GYD NY + ++ + +F+ LI E H RG
Sbjct: 211 ELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRG 269
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 28.9 bits (63), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 33/119 (27%)
Query: 29 QTAIMYQIYPRSFRD---VNGDGT---GDMRGITEKLDHFVDLGIESLWIQPF------- 75
+ A++Y+ + R F + D T G EKLD+ DLG+ + + P
Sbjct: 150 EDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVN 209
Query: 76 ----------YPAGGADL--GYDVSNYVDVDPLFGD--------MHDFEILIEEAHSRG 114
Y + ++ GYD NY + ++ + +F+ LI E H RG
Sbjct: 210 ELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRG 268
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 28.9 bits (63), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGA-DLGYDVSNYVDVDPLFGDMHDFEILIE 108
G R EKL + +LG+ ++ + P G GYD + + +G D L++
Sbjct: 141 GTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLMALVD 200
Query: 109 EAHSRG 114
AH G
Sbjct: 201 AAHRLG 206
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 28.9 bits (63), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 33/119 (27%)
Query: 29 QTAIMYQIYPRSFRD---VNGDGT---GDMRGITEKLDHFVDLGIESLWIQPF------- 75
+ A++Y+ + R F + D T G EKLD+ DLG+ + + P
Sbjct: 457 EDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVN 516
Query: 76 ----------YPAGGADL--GYDVSNYVDVDPLFGD--------MHDFEILIEEAHSRG 114
Y + ++ GYD NY + ++ + +F+ LI E H RG
Sbjct: 517 ELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRG 575
>pdb|2GDV|A Chain A, Sucrose Phosphorylase From Bifidobacterium Adolescentis
Reacted With Sucrose
pdb|2GDV|B Chain B, Sucrose Phosphorylase From Bifidobacterium Adolescentis
Reacted With Sucrose
Length = 504
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 40 SFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFY-PAGGADLGYDVSNYVDVDPLFG 98
++ D GDGT ++ +T+ L D + + I PF+ P GAD G+D ++ VD G
Sbjct: 9 TYADRLGDGT--IKSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDERLG 66
Query: 99 DMHDFEIL 106
D L
Sbjct: 67 SWDDVAEL 74
>pdb|2GDU|A Chain A, E232q Mutant Of Sucrose Phosphorylase From Bifidobacterium
Adolescentis In Complex With Sucrose
pdb|2GDU|B Chain B, E232q Mutant Of Sucrose Phosphorylase From Bifidobacterium
Adolescentis In Complex With Sucrose
Length = 504
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 40 SFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFY-PAGGADLGYDVSNYVDVDPLFG 98
++ D GDGT ++ +T+ L D + + I PF+ P GAD G+D ++ VD G
Sbjct: 9 TYADRLGDGT--IKSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDERLG 66
Query: 99 DMHDFEIL 106
D L
Sbjct: 67 SWDDVAEL 74
>pdb|1R7A|A Chain A, Sucrose Phosphorylase From Bifidobacterium Adolescentis
pdb|1R7A|B Chain B, Sucrose Phosphorylase From Bifidobacterium Adolescentis
Length = 504
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 40 SFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFY-PAGGADLGYDVSNYVDVDPLFG 98
++ D GDGT ++ +T+ L D + + I PF+ P GAD G+D ++ VD G
Sbjct: 9 TYADRLGDGT--IKSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDERLG 66
Query: 99 DMHDFEIL 106
D L
Sbjct: 67 SWDDVAEL 74
>pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 249
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 17 SCQVELPQKEWWQTAIMYQIYPRSFRDV 44
SC++ L ++ ++ AI+ Q++PRS D+
Sbjct: 100 SCEMGLQLRQTFEAAILTQLHPRSQIDI 127
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 57 EKLDHFVDLGIESLWIQPF--YPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
E D+ VD G + + P +P G+ GY V++Y FG DF L++ H G
Sbjct: 268 ELTDYIVDQGFTHVELLPVAEHPFAGS-WGYQVTSYYAPTSRFGTPDDFRALVDALHQAG 326
>pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase
Length = 515
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 55 ITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVD---------VDPLFGDMHDFE 104
+ + ++ LGI +LW+ P Y +D+GY V + D V +G +
Sbjct: 26 VANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKAQYL 85
Query: 105 ILIEEAHSRG 114
I+ AH+ G
Sbjct: 86 QAIQAAHAAG 95
>pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
pdb|4FGW|B Chain B, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
Length = 391
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 15/67 (22%)
Query: 10 LGFLSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIES 69
G LS + E+ Q+ W +T + Y I P+ FR G+G + +DH V +++
Sbjct: 176 CGALSGANIATEVAQEHWSETTVAYHI-PKDFR---GEG--------KDVDHKV---LKA 220
Query: 70 LWIQPFY 76
L+ +P++
Sbjct: 221 LFHRPYF 227
>pdb|3ECQ|A Chain A, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
Pneumoniae: Semet Structure
pdb|3ECQ|B Chain B, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
Pneumoniae: Semet Structure
Length = 1531
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 76 YPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
Y + G D G+ NY D+ G + DF+ LIE+A G
Sbjct: 616 YGSEGHDSGH--LNYADIGKRIGGVEDFKTLIEKAKKYG 652
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 32/118 (27%)
Query: 29 QTAIMYQIYPRSF-RDVNGDGT-----GDMRGITEKLDHFVDLGIESLWIQP----FY-- 76
Q A++Y+ + R F D + DG G +EKLD+ LG+ + + P FY
Sbjct: 266 QDAVIYEAHVRDFTSDQSLDGKLKNQLGTFAAFSEKLDYLQKLGVTHIQLLPVLSYFYVN 325
Query: 77 ------------PAGGADLGYDVSNYVDVDPLFGD--------MHDFEILIEEAHSRG 114
+ GYD +Y + ++ + + + + LI + H RG
Sbjct: 326 EMDKSRSTAYTSSDNNYNWGYDPQSYFALSGMYSEKPKDPSARIAELKQLIHDIHKRG 383
>pdb|3M7V|A Chain A, Crystal Structure Of Phosphopentomutase From Streptococcus
M
pdb|3M7V|B Chain B, Crystal Structure Of Phosphopentomutase From Streptococcus
M
Length = 413
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 45 NGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG---DMH 101
NG G + G + H VD I+++ + F G+ +N VD D L+G + H
Sbjct: 257 NGSGITNDMGHNKSNSHGVDTLIKTMGLSAFTK------GFSFTNLVDFDALYGHRRNAH 310
Query: 102 DFEILIEEAHSR 113
+ + E R
Sbjct: 311 GYRDCLHEFDER 322
>pdb|2HRK|A Chain A, Structural Basis Of Yeast Aminoacyl-Trna Synthetase
Complex Formation Revealed By Crystal Structures Of Two
Binary Sub- Complexes
pdb|2HSM|A Chain A, Structural Basis Of Yeast Aminoacyl-Trna Synthetase
Complex Formation Revealed By Crystal Structures Of Two
Binary Sub- Complexes
Length = 207
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 4/35 (11%)
Query: 91 VDVDPLFGDMHDF--EILIE--EAHSRGKPKRTFR 121
+++DP+FG+ HDF + L+E ++ + GK K T +
Sbjct: 169 LEMDPIFGEAHDFLSKSLLELKKSANVGKKKETHK 203
>pdb|2HRA|A Chain A, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HRA|B Chain B, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
Length = 209
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 4/35 (11%)
Query: 91 VDVDPLFGDMHDF--EILIE--EAHSRGKPKRTFR 121
+++DP+FG+ HDF + L+E ++ + GK K T +
Sbjct: 171 LEMDPIFGEAHDFLSKSLLELKKSANVGKKKETHK 205
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 45 NGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFE 104
NG G G + + D + IES I + GG +LG ++D L D
Sbjct: 9 NGSGKGTQGNLVK--DKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 105 ILIEEAHSRGK 115
+++E S+GK
Sbjct: 67 MVLETLESKGK 77
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 45 NGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFE 104
NG G G + + D + IES I + GG +LG ++D L D
Sbjct: 9 NGSGKGTQGNLVK--DKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 105 ILIEEAHSRGK 115
+++E S+GK
Sbjct: 67 MVLETLESKGK 77
>pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.92a
pdb|1E3Z|A Chain A, Acarbose Complex Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.93a
pdb|1E40|A Chain A, TrisMALTOTRIOSE COMPLEX OF CHIMAERIC AMYLASE FROM B.
Amyloliquefaciens And B. Licheniformis At 2.2a
pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.7a
Length = 483
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 60 DHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVD---------VDPLFGDMHDFEILIEE 109
+H D+GI ++WI P Y +D GY + D V +G + + I
Sbjct: 28 EHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGS 87
Query: 110 AHSR 113
HSR
Sbjct: 88 LHSR 91
>pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
pdb|3BH4|B Chain B, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
Length = 483
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 60 DHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVD---------VDPLFGDMHDFEILIEE 109
+H D+GI ++WI P Y +D GY + D V +G + + I
Sbjct: 28 EHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGS 87
Query: 110 AHSR 113
HSR
Sbjct: 88 LHSR 91
>pdb|1TMO|A Chain A, Trimethylamine N-Oxide Reductase From Shewanella Massilia
Length = 829
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 93 VDPLFGDMHDFEILIEEAHSRGKPKRTFREV 123
V+PLF + DFEI A GK K R +
Sbjct: 542 VEPLFDSLSDFEIFTRFAAVLGKEKEYTRNM 572
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,672,126
Number of Sequences: 62578
Number of extensions: 208826
Number of successful extensions: 617
Number of sequences better than 100.0: 137
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 144
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)