Query psy12953
Match_columns 136
No_of_seqs 121 out of 1198
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 15:24:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10933 trehalose-6-phosphate 100.0 1.5E-31 3.2E-36 225.7 11.0 109 23-131 3-114 (551)
2 TIGR02456 treS_nterm trehalose 100.0 2.2E-31 4.7E-36 224.2 9.9 105 26-130 1-108 (539)
3 PRK10785 maltodextrin glucosid 100.0 3.1E-31 6.7E-36 225.6 10.2 108 22-130 113-258 (598)
4 TIGR02403 trehalose_treC alpha 100.0 2.1E-30 4.7E-35 218.4 9.8 104 27-130 1-107 (543)
5 PRK09505 malS alpha-amylase; R 100.0 2E-28 4.4E-33 210.3 11.1 112 15-126 174-320 (683)
6 smart00642 Aamy Alpha-amylase 100.0 7E-28 1.5E-32 176.0 9.9 91 35-125 1-97 (166)
7 PRK12313 glycogen branching en 99.9 6.4E-27 1.4E-31 200.3 12.4 101 27-127 144-249 (633)
8 TIGR02402 trehalose_TreZ malto 99.9 1.5E-26 3.2E-31 195.1 11.5 95 28-127 91-189 (542)
9 KOG0471|consensus 99.9 6E-27 1.3E-31 197.5 8.4 109 24-132 11-122 (545)
10 COG0366 AmyA Glycosidases [Car 99.9 1.7E-26 3.7E-31 190.3 9.4 101 31-131 1-110 (505)
11 PRK05402 glycogen branching en 99.9 5.2E-26 1.1E-30 197.2 12.3 99 28-126 239-343 (726)
12 TIGR01515 branching_enzym alph 99.9 1.7E-25 3.6E-30 191.0 11.7 96 27-127 135-235 (613)
13 PF00128 Alpha-amylase: Alpha 99.9 1.8E-26 3.9E-31 178.2 5.1 80 50-129 1-83 (316)
14 TIGR02100 glgX_debranch glycog 99.9 2.8E-25 6.1E-30 191.4 11.3 103 26-128 151-275 (688)
15 PRK03705 glycogen debranching 99.9 4.3E-25 9.3E-30 189.4 11.2 101 25-125 145-269 (658)
16 PRK14706 glycogen branching en 99.9 2.6E-24 5.6E-29 184.2 11.4 99 28-126 142-245 (639)
17 PRK12568 glycogen branching en 99.9 3.8E-24 8.2E-29 184.4 12.0 100 27-126 243-347 (730)
18 PLN02960 alpha-amylase 99.9 3.8E-24 8.3E-29 185.9 12.1 102 25-128 390-496 (897)
19 TIGR02104 pulA_typeI pullulana 99.9 1.6E-24 3.5E-29 184.7 8.5 101 25-125 122-256 (605)
20 PLN00196 alpha-amylase; Provis 99.9 4.3E-23 9.4E-28 169.8 13.8 100 29-132 23-126 (428)
21 COG0296 GlgB 1,4-alpha-glucan 99.9 1.7E-23 3.6E-28 177.5 11.4 97 27-125 141-241 (628)
22 PRK14705 glycogen branching en 99.9 1.5E-23 3.2E-28 188.2 11.6 94 28-126 745-843 (1224)
23 TIGR02102 pullulan_Gpos pullul 99.9 3.1E-23 6.7E-28 185.0 11.7 102 27-128 448-585 (1111)
24 PRK14510 putative bifunctional 99.9 6.3E-23 1.4E-27 185.3 10.5 104 25-128 153-277 (1221)
25 PLN02447 1,4-alpha-glucan-bran 99.9 2.9E-22 6.2E-27 173.3 12.1 97 29-127 228-329 (758)
26 PRK09441 cytoplasmic alpha-amy 99.9 2.2E-22 4.9E-27 167.5 10.8 93 30-126 3-109 (479)
27 PLN02877 alpha-amylase/limit d 99.9 2.6E-21 5.5E-26 170.3 11.5 105 26-130 335-498 (970)
28 PLN02361 alpha-amylase 99.8 6.6E-21 1.4E-25 155.7 11.2 94 29-128 10-106 (401)
29 TIGR02103 pullul_strch alpha-1 99.8 6.1E-21 1.3E-25 167.6 10.5 106 26-131 248-437 (898)
30 COG1523 PulA Type II secretory 99.8 3.5E-21 7.7E-26 165.3 8.2 102 24-125 165-292 (697)
31 PLN02784 alpha-amylase 99.8 4.9E-20 1.1E-24 160.1 10.8 101 30-131 498-601 (894)
32 TIGR02401 trehalose_TreY malto 99.8 8.7E-20 1.9E-24 158.8 10.4 78 49-126 12-93 (825)
33 PRK14511 maltooligosyl trehalo 99.8 8.9E-20 1.9E-24 159.4 10.5 79 50-128 17-99 (879)
34 PRK13840 sucrose phosphorylase 99.8 6.8E-20 1.5E-24 152.8 8.7 91 29-131 2-97 (495)
35 KOG0470|consensus 99.8 2.5E-19 5.4E-24 152.5 6.5 96 30-125 229-338 (757)
36 PRK14507 putative bifunctional 99.8 1.2E-18 2.6E-23 159.9 11.3 88 31-126 744-835 (1693)
37 TIGR03852 sucrose_gtfA sucrose 99.8 1.8E-19 3.8E-24 149.5 4.0 87 36-131 3-92 (470)
38 TIGR02455 TreS_stutzeri trehal 99.7 5.2E-18 1.1E-22 143.9 8.7 98 29-131 50-162 (688)
39 COG3280 TreY Maltooligosyl tre 99.6 6.8E-16 1.5E-20 132.0 7.2 80 50-129 16-100 (889)
40 TIGR01531 glyc_debranch glycog 99.6 3E-15 6.4E-20 135.3 9.2 83 49-131 128-218 (1464)
41 PLN03244 alpha-amylase; Provis 99.1 4.7E-10 1E-14 97.7 8.3 69 29-127 399-470 (872)
42 PF14701 hDGE_amylase: glucano 99.0 1.8E-09 3.9E-14 88.8 8.8 90 30-127 7-106 (423)
43 KOG2212|consensus 98.0 3.8E-05 8.3E-10 62.2 8.4 90 24-125 21-122 (504)
44 PF14871 GHL6: Hypothetical gl 98.0 1.2E-05 2.7E-10 56.7 4.5 60 56-119 3-62 (132)
45 KOG3625|consensus 97.9 2E-05 4.4E-10 70.1 5.2 79 49-127 138-226 (1521)
46 PF02324 Glyco_hydro_70: Glyco 97.7 9.6E-05 2.1E-09 64.1 6.5 68 52-119 586-665 (809)
47 PF02638 DUF187: Glycosyl hydr 97.1 0.0012 2.7E-08 52.7 6.0 69 51-119 17-88 (311)
48 PF14872 GHL5: Hypothetical gl 97.1 0.0021 4.6E-08 55.8 7.6 99 27-132 175-340 (811)
49 PF14488 DUF4434: Domain of un 97.1 0.003 6.4E-08 46.2 7.5 66 51-119 18-83 (166)
50 COG1649 Uncharacterized protei 97.1 0.0075 1.6E-07 50.1 10.3 74 46-119 57-133 (418)
51 PF00150 Cellulase: Cellulase 96.3 0.0097 2.1E-07 45.4 5.6 63 54-124 22-85 (281)
52 PLN03059 beta-galactosidase; P 96.0 0.032 6.9E-07 50.0 8.0 61 50-119 56-116 (840)
53 PRK09936 hypothetical protein; 96.0 0.086 1.9E-06 41.9 9.6 70 28-119 20-90 (296)
54 PRK14508 4-alpha-glucanotransf 95.8 0.027 5.8E-07 47.8 6.4 57 47-103 20-77 (497)
55 PF01301 Glyco_hydro_35: Glyco 95.8 0.013 2.8E-07 47.0 4.1 59 52-119 23-81 (319)
56 PF07745 Glyco_hydro_53: Glyco 95.5 0.054 1.2E-06 43.8 6.8 62 56-131 27-88 (332)
57 PRK14510 putative bifunctional 95.4 0.041 8.8E-07 51.4 6.2 60 45-104 738-801 (1221)
58 PF10566 Glyco_hydro_97: Glyco 95.2 0.093 2E-06 41.4 7.0 69 49-124 28-97 (273)
59 PLN02950 4-alpha-glucanotransf 95.2 0.082 1.8E-06 48.0 7.4 58 48-105 278-340 (909)
60 PF02446 Glyco_hydro_77: 4-alp 95.0 0.042 9E-07 46.6 4.8 61 46-106 11-73 (496)
61 cd06568 GH20_SpHex_like A subg 94.9 0.17 3.6E-06 40.8 7.8 67 50-119 15-93 (329)
62 PLN03236 4-alpha-glucanotransf 94.9 0.093 2E-06 46.6 6.8 77 27-105 59-140 (745)
63 PRK11052 malQ 4-alpha-glucanot 94.7 0.11 2.4E-06 46.0 6.9 63 45-107 157-223 (695)
64 PLN02635 disproportionating en 94.7 0.099 2.1E-06 44.9 6.3 70 33-104 31-105 (538)
65 cd06562 GH20_HexA_HexB-like Be 94.4 0.18 4E-06 40.8 7.0 72 50-124 15-97 (348)
66 PF01120 Alpha_L_fucos: Alpha- 94.4 0.13 2.8E-06 41.6 6.0 63 56-119 94-156 (346)
67 cd06569 GH20_Sm-chitobiase-lik 94.3 0.26 5.7E-06 41.3 7.9 75 50-124 19-124 (445)
68 PF13204 DUF4038: Protein of u 93.7 0.29 6.2E-06 38.7 6.8 67 51-119 28-106 (289)
69 cd06565 GH20_GcnA-like Glycosy 93.7 0.31 6.6E-06 38.7 6.9 61 50-119 14-78 (301)
70 smart00812 Alpha_L_fucos Alpha 93.4 0.32 6.9E-06 40.1 6.8 63 56-119 84-146 (384)
71 PRK10076 pyruvate formate lyas 92.8 1.1 2.3E-05 34.0 8.4 66 52-119 144-211 (213)
72 TIGR03849 arch_ComA phosphosul 92.6 0.6 1.3E-05 36.1 6.8 51 57-128 75-125 (237)
73 PF02449 Glyco_hydro_42: Beta- 92.5 0.17 3.8E-06 41.0 3.9 55 53-119 10-65 (374)
74 PF00728 Glyco_hydro_20: Glyco 92.3 0.17 3.7E-06 40.3 3.6 67 50-119 15-91 (351)
75 cd02742 GH20_hexosaminidase Be 92.3 0.47 1E-05 37.6 6.1 67 50-119 13-90 (303)
76 cd06593 GH31_xylosidase_YicI Y 92.1 0.47 1E-05 37.4 6.0 61 50-119 21-84 (308)
77 cd06592 GH31_glucosidase_KIAA1 91.8 0.73 1.6E-05 36.5 6.7 59 50-119 27-88 (303)
78 cd06564 GH20_DspB_LnbB-like Gl 91.1 1.2 2.5E-05 35.7 7.3 70 50-119 14-100 (326)
79 PRK14507 putative bifunctional 91.1 0.34 7.3E-06 46.7 4.7 60 46-105 187-250 (1693)
80 cd06563 GH20_chitobiase-like T 91.0 0.96 2.1E-05 36.7 6.8 70 50-119 15-104 (357)
81 PF13380 CoA_binding_2: CoA bi 90.9 0.58 1.3E-05 31.9 4.7 46 52-122 65-110 (116)
82 TIGR03356 BGL beta-galactosida 90.8 0.85 1.9E-05 38.0 6.4 67 49-123 50-117 (427)
83 cd06570 GH20_chitobiase-like_1 90.6 2.1 4.5E-05 34.3 8.2 67 50-119 15-86 (311)
84 PRK01060 endonuclease IV; Prov 90.4 1.3 2.9E-05 34.0 6.8 53 52-117 11-63 (281)
85 PRK14582 pgaB outer membrane N 90.3 1.4 3.1E-05 38.9 7.6 71 50-125 331-406 (671)
86 KOG0496|consensus 90.2 0.89 1.9E-05 39.8 6.1 61 50-119 46-106 (649)
87 COG3867 Arabinogalactan endo-1 89.9 1.9 4.1E-05 34.9 7.3 66 56-129 66-132 (403)
88 PF02679 ComA: (2R)-phospho-3- 89.9 0.75 1.6E-05 35.7 5.0 45 56-119 87-131 (244)
89 PTZ00445 p36-lilke protein; Pr 89.2 2.2 4.8E-05 32.6 6.9 58 55-119 31-96 (219)
90 KOG1065|consensus 88.9 2.6 5.5E-05 38.0 8.1 63 50-122 308-372 (805)
91 PLN02849 beta-glucosidase 88.5 3.8 8.1E-05 35.1 8.7 67 50-124 76-143 (503)
92 PRK15452 putative protease; Pr 88.1 2.3 5E-05 35.8 7.1 60 50-125 11-71 (443)
93 PF05913 DUF871: Bacterial pro 87.7 1.1 2.5E-05 36.6 4.9 55 50-119 11-65 (357)
94 COG0329 DapA Dihydrodipicolina 87.6 3.1 6.7E-05 33.0 7.2 64 49-129 82-145 (299)
95 cd06589 GH31 The enzymes of gl 87.5 2.5 5.3E-05 32.7 6.5 61 50-119 21-84 (265)
96 cd06599 GH31_glycosidase_Aec37 87.4 1.9 4.1E-05 34.4 5.9 61 52-119 28-91 (317)
97 PF13407 Peripla_BP_4: Peripla 87.4 2.3 5.1E-05 31.6 6.2 49 50-121 39-87 (257)
98 PRK15447 putative protease; Pr 87.4 3.1 6.7E-05 33.0 7.1 56 50-123 15-71 (301)
99 PF13199 Glyco_hydro_66: Glyco 87.3 3.7 8.1E-05 35.6 8.0 71 51-121 116-190 (559)
100 COG2730 BglC Endoglucanase [Ca 87.1 1.5 3.3E-05 36.2 5.4 59 56-123 76-138 (407)
101 PRK13210 putative L-xylulose 5 87.0 2.2 4.8E-05 32.7 6.0 54 54-119 17-70 (284)
102 PF13200 DUF4015: Putative gly 86.2 1.5 3.3E-05 35.3 4.8 65 50-119 10-79 (316)
103 cd06594 GH31_glucosidase_YihQ 86.1 3.6 7.8E-05 32.9 6.9 64 51-119 21-89 (317)
104 TIGR00542 hxl6Piso_put hexulos 86.1 2.8 6E-05 32.4 6.1 55 53-119 16-70 (279)
105 COG3589 Uncharacterized conser 85.9 1.4 3E-05 35.9 4.3 55 50-119 13-67 (360)
106 cd06597 GH31_transferase_CtsY 85.6 4.1 8.8E-05 32.9 7.0 66 51-119 22-103 (340)
107 cd06604 GH31_glucosidase_II_Ma 85.6 2.6 5.6E-05 33.8 5.9 58 51-119 22-82 (339)
108 PF03198 Glyco_hydro_72: Gluca 85.4 2.7 5.8E-05 33.9 5.8 71 27-119 27-97 (314)
109 cd04724 Tryptophan_synthase_al 85.0 3.5 7.6E-05 31.6 6.1 43 54-119 92-134 (242)
110 PF08139 LPAM_1: Prokaryotic m 84.9 0.96 2.1E-05 22.8 2.0 19 1-19 6-24 (25)
111 cd05014 SIS_Kpsf KpsF-like pro 84.8 4.4 9.6E-05 27.2 6.0 60 60-119 20-79 (128)
112 PRK12928 lipoyl synthase; Prov 84.7 6.3 0.00014 31.2 7.6 62 49-119 215-276 (290)
113 COG3222 Uncharacterized protei 83.6 0.57 1.2E-05 35.1 1.1 41 79-119 138-184 (211)
114 cd00954 NAL N-Acetylneuraminic 83.4 10 0.00023 29.6 8.3 58 50-125 80-139 (288)
115 PLN02591 tryptophan synthase 83.4 5 0.00011 31.2 6.4 43 54-119 94-136 (250)
116 PF03932 CutC: CutC family; I 83.2 6 0.00013 29.8 6.5 59 50-129 69-127 (201)
117 COG0826 Collagenase and relate 82.7 6.4 0.00014 32.1 7.0 58 50-123 14-72 (347)
118 cd00953 KDG_aldolase KDG (2-ke 82.4 12 0.00026 29.2 8.3 58 50-125 75-132 (279)
119 PRK13111 trpA tryptophan synth 82.1 5.4 0.00012 31.1 6.2 43 54-119 105-147 (258)
120 PRK09856 fructoselysine 3-epim 82.0 5.4 0.00012 30.5 6.1 52 54-119 14-65 (275)
121 PRK09852 cryptic 6-phospho-bet 81.8 5 0.00011 34.1 6.2 69 50-125 68-137 (474)
122 cd06602 GH31_MGAM_SI_GAA This 81.0 6.4 0.00014 31.7 6.4 60 51-119 22-84 (339)
123 TIGR00510 lipA lipoate synthas 80.5 12 0.00027 29.8 7.8 62 49-119 218-279 (302)
124 PF07071 DUF1341: Protein of u 80.5 6.6 0.00014 29.8 5.8 45 54-117 136-180 (218)
125 PF02065 Melibiase: Melibiase; 80.5 5.5 0.00012 33.0 6.0 66 51-119 56-122 (394)
126 cd01299 Met_dep_hydrolase_A Me 80.3 13 0.00029 29.1 8.0 65 50-124 117-181 (342)
127 TIGR00262 trpA tryptophan synt 80.1 7.5 0.00016 30.2 6.4 20 100-119 126-145 (256)
128 PLN02814 beta-glucosidase 80.1 5.9 0.00013 33.9 6.2 68 50-125 74-142 (504)
129 cd06600 GH31_MGAM-like This fa 80.0 6.6 0.00014 31.3 6.2 59 50-119 21-82 (317)
130 PRK11145 pflA pyruvate formate 80.0 12 0.00027 28.2 7.4 63 54-118 180-245 (246)
131 PRK10426 alpha-glucosidase; Pr 79.9 11 0.00025 33.1 8.0 84 19-119 199-287 (635)
132 cd06591 GH31_xylosidase_XylS X 79.5 7 0.00015 31.1 6.2 61 50-119 21-84 (319)
133 PRK13125 trpA tryptophan synth 79.3 9.1 0.0002 29.3 6.5 46 54-119 89-134 (244)
134 smart00518 AP2Ec AP endonuclea 79.3 12 0.00026 28.6 7.2 22 54-75 11-32 (273)
135 PRK13209 L-xylulose 5-phosphat 79.2 6.8 0.00015 30.1 5.9 54 54-119 22-75 (283)
136 TIGR00612 ispG_gcpE 1-hydroxy- 79.1 17 0.00037 29.7 8.1 77 50-126 31-134 (346)
137 PRK09989 hypothetical protein; 79.1 6.9 0.00015 29.8 5.8 43 54-119 16-58 (258)
138 cd06603 GH31_GANC_GANAB_alpha 79.1 6.1 0.00013 31.7 5.7 59 50-119 21-82 (339)
139 PF01055 Glyco_hydro_31: Glyco 78.9 11 0.00024 31.1 7.4 58 51-119 41-101 (441)
140 TIGR00217 malQ 4-alpha-glucano 78.9 3.5 7.5E-05 35.4 4.4 56 47-102 29-86 (513)
141 cd00019 AP2Ec AP endonuclease 78.9 12 0.00026 28.7 7.2 22 53-74 10-31 (279)
142 COG1891 Uncharacterized protei 78.8 1.2 2.6E-05 33.4 1.4 26 99-124 165-195 (235)
143 COG0041 PurE Phosphoribosylcar 78.8 8.9 0.00019 27.9 5.8 50 50-119 13-62 (162)
144 PRK04147 N-acetylneuraminate l 78.7 9.8 0.00021 29.8 6.7 57 50-124 83-140 (293)
145 TIGR00433 bioB biotin syntheta 78.7 6.3 0.00014 30.6 5.6 54 56-119 123-176 (296)
146 TIGR02666 moaA molybdenum cofa 78.3 13 0.00029 29.4 7.5 53 49-119 135-187 (334)
147 cd00408 DHDPS-like Dihydrodipi 78.2 10 0.00022 29.3 6.6 57 50-124 76-133 (281)
148 PRK09997 hydroxypyruvate isome 77.8 8 0.00017 29.4 5.8 43 54-119 16-58 (258)
149 COG2355 Zn-dependent dipeptida 77.4 25 0.00054 28.4 8.6 74 31-115 216-290 (313)
150 cd00950 DHDPS Dihydrodipicolin 77.2 14 0.00031 28.6 7.2 56 50-123 79-135 (284)
151 PRK03170 dihydrodipicolinate s 77.2 18 0.00039 28.2 7.8 57 50-124 80-137 (292)
152 cd04824 eu_ALAD_PBGS_cysteine_ 77.0 17 0.00037 29.4 7.5 27 50-76 48-74 (320)
153 cd00945 Aldolase_Class_I Class 76.9 11 0.00023 26.9 6.0 25 52-76 64-88 (201)
154 PF14883 GHL13: Hypothetical g 76.9 12 0.00025 30.0 6.5 63 54-119 18-82 (294)
155 smart00195 DSPc Dual specifici 76.8 20 0.00044 24.3 7.6 62 58-119 18-83 (138)
156 PF08821 CGGC: CGGC domain; I 76.6 14 0.00031 25.0 6.1 54 52-119 51-104 (107)
157 PRK00164 moaA molybdenum cofac 76.4 15 0.00032 29.1 7.2 53 49-119 140-192 (331)
158 COG1640 MalQ 4-alpha-glucanotr 76.4 11 0.00025 32.4 6.8 77 25-106 12-92 (520)
159 PLN02428 lipoic acid synthase 76.3 16 0.00034 30.0 7.3 61 50-119 259-319 (349)
160 COG1874 LacA Beta-galactosidas 76.3 6.6 0.00014 34.8 5.5 56 53-119 30-86 (673)
161 COG1809 (2R)-phospho-3-sulfola 76.2 8.7 0.00019 29.8 5.4 56 55-131 92-147 (258)
162 PRK13361 molybdenum cofactor b 76.2 16 0.00034 29.1 7.3 53 49-119 136-188 (329)
163 cd04823 ALAD_PBGS_aspartate_ri 75.9 17 0.00037 29.4 7.3 28 50-77 51-78 (320)
164 PRK03620 5-dehydro-4-deoxygluc 75.8 14 0.00031 29.1 6.9 55 51-123 86-141 (303)
165 PLN02417 dihydrodipicolinate s 75.7 20 0.00044 27.9 7.7 57 50-125 80-136 (280)
166 PRK07094 biotin synthase; Prov 75.6 5.9 0.00013 31.3 4.7 28 91-119 156-183 (323)
167 PTZ00413 lipoate synthase; Pro 75.6 18 0.00039 30.1 7.5 62 49-119 306-367 (398)
168 TIGR00674 dapA dihydrodipicoli 75.5 16 0.00035 28.4 7.1 56 50-123 77-133 (285)
169 cd06598 GH31_transferase_CtsZ 75.5 9.3 0.0002 30.4 5.8 63 51-119 22-88 (317)
170 TIGR01210 conserved hypothetic 75.4 8.5 0.00018 30.7 5.6 55 56-119 117-173 (313)
171 PTZ00242 protein tyrosine phos 75.4 12 0.00026 27.0 5.9 66 54-119 28-103 (166)
172 PLN02705 beta-amylase 75.1 28 0.0006 30.8 8.8 74 31-119 247-323 (681)
173 PF00232 Glyco_hydro_1: Glycos 75.0 5.6 0.00012 33.3 4.6 61 50-124 55-123 (455)
174 PF01261 AP_endonuc_2: Xylose 74.9 2 4.3E-05 30.9 1.7 45 59-119 1-45 (213)
175 PRK13384 delta-aminolevulinic 74.4 21 0.00045 28.9 7.4 28 50-77 58-85 (322)
176 PRK11572 copper homeostasis pr 74.4 16 0.00035 28.5 6.7 59 50-129 70-128 (248)
177 TIGR00683 nanA N-acetylneurami 74.3 27 0.00058 27.4 8.1 58 50-125 80-139 (290)
178 CHL00200 trpA tryptophan synth 74.3 12 0.00026 29.3 6.0 43 54-119 107-149 (263)
179 cd02932 OYE_YqiM_FMN Old yello 74.0 13 0.00029 29.7 6.4 69 53-126 33-103 (336)
180 PRK15014 6-phospho-beta-glucos 74.0 11 0.00023 32.1 6.0 69 50-125 66-135 (477)
181 TIGR03581 EF_0839 conserved hy 73.9 11 0.00023 29.1 5.4 60 54-119 136-207 (236)
182 PF13727 CoA_binding_3: CoA-bi 73.6 8 0.00017 26.9 4.6 46 50-119 128-173 (175)
183 PRK06256 biotin synthase; Vali 73.6 7.2 0.00016 31.0 4.8 53 57-119 153-205 (336)
184 PRK00366 ispG 4-hydroxy-3-meth 73.2 16 0.00035 30.0 6.6 74 50-126 39-143 (360)
185 TIGR03470 HpnH hopanoid biosyn 73.2 14 0.00031 29.4 6.4 29 50-78 175-203 (318)
186 cd06595 GH31_xylosidase_XylS-l 73.0 12 0.00026 29.4 5.8 63 51-119 23-92 (292)
187 TIGR00416 sms DNA repair prote 73.0 21 0.00046 30.0 7.6 58 59-126 163-224 (454)
188 PRK13561 putative diguanylate 72.7 12 0.00026 32.3 6.3 74 32-119 520-609 (651)
189 TIGR02313 HpaI-NOT-DapA 2,4-di 72.7 16 0.00035 28.8 6.5 58 50-125 79-138 (294)
190 COG0821 gcpE 1-hydroxy-2-methy 72.6 12 0.00027 30.5 5.8 77 50-126 33-136 (361)
191 TIGR01233 lacG 6-phospho-beta- 72.6 9.1 0.0002 32.4 5.3 68 49-124 49-117 (467)
192 COG3622 Hfi Hydroxypyruvate is 72.5 7.4 0.00016 30.4 4.3 61 53-123 85-148 (260)
193 COG2200 Rtn c-di-GMP phosphodi 72.5 16 0.00036 28.0 6.4 63 50-119 133-211 (256)
194 TIGR03234 OH-pyruv-isom hydrox 72.3 13 0.00029 28.0 5.8 43 54-119 15-57 (254)
195 TIGR00539 hemN_rel putative ox 72.3 14 0.00031 29.8 6.3 54 57-119 101-155 (360)
196 PF00701 DHDPS: Dihydrodipicol 72.2 16 0.00035 28.4 6.4 56 50-123 80-136 (289)
197 PF07485 DUF1529: Domain of Un 72.0 7.5 0.00016 27.1 3.9 29 100-128 67-96 (123)
198 PLN02803 beta-amylase 72.0 18 0.0004 31.3 6.9 56 50-119 104-162 (548)
199 PLN02801 beta-amylase 71.9 19 0.0004 31.0 6.9 74 31-119 16-92 (517)
200 TIGR03249 KdgD 5-dehydro-4-deo 71.9 20 0.00043 28.2 6.8 55 51-123 84-139 (296)
201 smart00052 EAL Putative diguan 71.9 7.2 0.00016 28.6 4.2 81 31-119 118-208 (241)
202 PRK05481 lipoyl synthase; Prov 71.8 28 0.0006 27.4 7.6 62 49-119 207-268 (289)
203 PF01373 Glyco_hydro_14: Glyco 71.5 5.9 0.00013 33.0 3.8 56 50-119 13-71 (402)
204 cd00952 CHBPH_aldolase Trans-o 71.2 33 0.00072 27.2 8.0 58 50-125 87-146 (309)
205 cd00951 KDGDH 5-dehydro-4-deox 71.1 14 0.0003 29.0 5.8 54 51-122 79-133 (289)
206 PRK09589 celA 6-phospho-beta-g 70.8 11 0.00024 32.0 5.4 69 49-124 63-132 (476)
207 cd03412 CbiK_N Anaerobic cobal 70.6 9.9 0.00021 26.2 4.3 29 51-79 54-82 (127)
208 cd06311 PBP1_ABC_sugar_binding 70.6 28 0.0006 26.0 7.2 48 52-122 46-93 (274)
209 cd00384 ALAD_PBGS Porphobilino 70.4 30 0.00065 27.9 7.5 27 50-76 48-74 (314)
210 TIGR02493 PFLA pyruvate format 70.4 14 0.0003 27.6 5.4 62 51-112 172-234 (235)
211 cd01301 rDP_like renal dipepti 70.3 32 0.00069 27.5 7.7 71 32-115 222-293 (309)
212 PLN02905 beta-amylase 70.3 23 0.0005 31.4 7.2 57 49-119 282-341 (702)
213 PF04476 DUF556: Protein of un 70.2 15 0.00033 28.4 5.6 49 59-119 137-185 (235)
214 cd06318 PBP1_ABC_sugar_binding 69.5 28 0.00061 26.0 7.0 50 50-122 39-88 (282)
215 TIGR03586 PseI pseudaminic aci 69.4 21 0.00045 28.9 6.5 70 50-119 14-95 (327)
216 PLN02998 beta-glucosidase 69.3 9.7 0.00021 32.5 4.8 67 50-124 79-146 (497)
217 cd01121 Sms Sms (bacterial rad 69.2 30 0.00066 28.4 7.5 59 59-127 151-213 (372)
218 PLN02161 beta-amylase 69.2 26 0.00057 30.2 7.2 58 48-119 112-172 (531)
219 PRK13511 6-phospho-beta-galact 69.2 13 0.00028 31.5 5.5 68 49-124 50-118 (469)
220 PRK14455 ribosomal RNA large s 69.2 46 0.001 27.1 8.6 55 52-119 277-331 (356)
221 PRK09593 arb 6-phospho-beta-gl 69.1 20 0.00043 30.5 6.6 70 49-125 69-139 (478)
222 CHL00040 rbcL ribulose-1,5-bis 68.8 29 0.00062 29.7 7.4 53 50-125 245-297 (475)
223 PRK02227 hypothetical protein; 68.6 14 0.0003 28.7 5.1 51 57-119 135-185 (238)
224 PRK14453 chloramphenicol/florf 68.4 58 0.0012 26.5 8.9 67 36-119 254-324 (347)
225 PRK09856 fructoselysine 3-epim 68.3 36 0.00079 25.8 7.5 61 52-122 89-150 (275)
226 PF01244 Peptidase_M19: Membra 68.2 7.3 0.00016 31.3 3.7 73 32-115 228-301 (320)
227 COG0174 GlnA Glutamine synthet 68.1 53 0.0012 27.8 8.9 73 50-122 105-187 (443)
228 PRK13523 NADPH dehydrogenase N 68.1 23 0.00049 28.6 6.5 70 53-126 37-107 (337)
229 TIGR02668 moaA_archaeal probab 67.6 32 0.00069 26.8 7.1 53 49-119 130-182 (302)
230 cd06542 GH18_EndoS-like Endo-b 67.5 6.1 0.00013 30.1 3.0 21 99-119 49-69 (255)
231 cd01948 EAL EAL domain. This d 67.5 12 0.00025 27.5 4.5 81 31-119 117-207 (240)
232 PRK14462 ribosomal RNA large s 67.3 63 0.0014 26.5 8.9 64 36-119 269-332 (356)
233 TIGR01496 DHPS dihydropteroate 67.1 56 0.0012 25.3 8.3 72 33-119 5-80 (257)
234 PLN02389 biotin synthase 67.0 21 0.00045 29.5 6.1 21 99-119 211-231 (379)
235 TIGR03551 F420_cofH 7,8-dideme 66.7 8.8 0.00019 30.8 3.9 21 99-119 177-197 (343)
236 PLN00197 beta-amylase; Provisi 66.5 33 0.00071 29.9 7.3 74 31-119 106-182 (573)
237 cd06601 GH31_lyase_GLase GLase 66.5 26 0.00056 28.3 6.5 58 51-119 22-82 (332)
238 PRK10355 xylF D-xylose transpo 66.4 50 0.0011 26.0 8.2 25 51-75 66-90 (330)
239 cd04734 OYE_like_3_FMN Old yel 66.2 25 0.00055 28.3 6.5 66 53-125 33-102 (343)
240 PRK14457 ribosomal RNA large s 66.0 67 0.0015 26.1 8.9 63 37-119 262-324 (345)
241 KOG0053|consensus 66.0 14 0.00031 30.8 5.0 25 100-124 178-202 (409)
242 COG1879 RbsB ABC-type sugar tr 65.9 29 0.00063 27.0 6.6 47 50-119 75-121 (322)
243 PRK12677 xylose isomerase; Pro 65.9 33 0.00071 28.3 7.1 54 53-119 31-85 (384)
244 PF07488 Glyco_hydro_67M: Glyc 65.7 32 0.0007 27.9 6.7 56 51-119 55-110 (328)
245 cd03322 rpsA The starvation se 65.6 36 0.00078 27.5 7.3 68 51-119 175-270 (361)
246 PRK11194 ribosomal RNA large s 65.4 71 0.0015 26.3 9.0 64 36-119 268-331 (372)
247 PRK15408 autoinducer 2-binding 65.1 23 0.00049 28.3 6.0 23 100-122 91-113 (336)
248 cd06308 PBP1_sensor_kinase_lik 65.1 33 0.00072 25.5 6.6 49 50-121 40-88 (270)
249 PRK09997 hydroxypyruvate isome 64.9 12 0.00026 28.5 4.1 61 52-122 84-147 (258)
250 cd04795 SIS SIS domain. SIS (S 64.5 8.6 0.00019 23.6 2.8 59 61-119 19-79 (87)
251 PRK11823 DNA repair protein Ra 64.1 38 0.00083 28.4 7.3 60 58-127 148-211 (446)
252 TIGR03471 HpnJ hopanoid biosyn 64.1 17 0.00037 30.4 5.2 21 99-119 321-341 (472)
253 TIGR03841 F420_Rv3093c probabl 63.8 8.8 0.00019 30.2 3.3 27 49-75 274-300 (301)
254 TIGR01162 purE phosphoribosyla 63.6 19 0.0004 26.2 4.7 50 50-119 9-58 (156)
255 PF06415 iPGM_N: BPG-independe 63.6 13 0.00028 28.6 4.1 51 53-119 14-65 (223)
256 TIGR02634 xylF D-xylose ABC tr 63.4 35 0.00075 26.3 6.6 26 51-76 39-64 (302)
257 COG1103 Archaea-specific pyrid 62.8 9 0.0002 30.8 3.1 29 91-119 163-191 (382)
258 TIGR03569 NeuB_NnaB N-acetylne 62.8 35 0.00077 27.6 6.6 70 50-119 13-94 (329)
259 PLN03236 4-alpha-glucanotransf 62.6 25 0.00053 31.8 6.1 45 72-128 65-113 (745)
260 smart00733 Mterf Mitochondrial 62.6 7.5 0.00016 18.8 1.9 17 52-68 15-31 (31)
261 cd03409 Chelatase_Class_II Cla 62.4 8.6 0.00019 24.6 2.6 25 54-78 46-70 (101)
262 cd03413 CbiK_C Anaerobic cobal 62.3 7.9 0.00017 25.8 2.4 26 54-79 43-68 (103)
263 PRK04208 rbcL ribulose bisopho 61.7 42 0.00091 28.6 7.1 49 50-119 238-286 (468)
264 PRK11627 hypothetical protein; 61.7 8.2 0.00018 28.8 2.7 21 1-21 1-21 (192)
265 cd05013 SIS_RpiR RpiR-like pro 61.7 12 0.00026 24.9 3.3 61 59-119 32-92 (139)
266 COG1082 IolE Sugar phosphate i 61.5 28 0.00061 26.2 5.7 22 53-74 15-36 (274)
267 PF07021 MetW: Methionine bios 61.4 18 0.00038 27.2 4.4 61 56-119 92-164 (193)
268 cd03329 MR_like_4 Mandelate ra 61.4 63 0.0014 26.1 8.0 69 50-119 200-297 (368)
269 TIGR03127 RuMP_HxlB 6-phospho 61.4 37 0.00079 24.3 6.0 56 59-119 49-104 (179)
270 PRK04302 triosephosphate isome 61.1 26 0.00056 26.3 5.3 42 59-119 78-119 (223)
271 PRK08207 coproporphyrinogen II 61.0 22 0.00047 30.3 5.4 55 56-119 269-324 (488)
272 COG4213 XylF ABC-type xylose t 60.9 43 0.00093 27.3 6.7 47 50-119 65-111 (341)
273 COG2723 BglB Beta-glucosidase/ 60.9 34 0.00074 29.1 6.4 64 49-123 55-123 (460)
274 PRK00694 4-hydroxy-3-methylbut 60.8 1E+02 0.0022 27.2 9.3 27 100-126 144-171 (606)
275 PF01212 Beta_elim_lyase: Beta 60.7 7.5 0.00016 30.7 2.4 57 49-119 105-163 (290)
276 TIGR00587 nfo apurinic endonuc 60.7 44 0.00095 25.8 6.7 50 54-116 12-61 (274)
277 PF00724 Oxidored_FMN: NADH:fl 60.7 11 0.00023 30.4 3.3 67 54-127 37-107 (341)
278 COG0320 LipA Lipoate synthase 60.6 44 0.00096 26.7 6.6 62 49-119 224-285 (306)
279 PRK00278 trpC indole-3-glycero 60.6 29 0.00063 26.9 5.7 20 100-119 146-165 (260)
280 cd05008 SIS_GlmS_GlmD_1 SIS (S 60.4 29 0.00063 22.9 5.1 59 60-119 19-78 (126)
281 COG0113 HemB Delta-aminolevuli 60.3 64 0.0014 26.2 7.5 29 50-78 58-86 (330)
282 PLN02951 Molybderin biosynthes 60.1 60 0.0013 26.5 7.7 25 100-124 214-240 (373)
283 PRK14017 galactonate dehydrata 60.1 52 0.0011 26.8 7.3 68 51-119 189-284 (382)
284 TIGR00542 hxl6Piso_put hexulos 60.0 22 0.00047 27.3 4.9 58 52-119 93-151 (279)
285 PRK13398 3-deoxy-7-phosphohept 60.0 48 0.001 25.9 6.8 60 49-119 37-96 (266)
286 PLN02757 sirohydrochlorine fer 59.9 35 0.00075 24.4 5.6 27 54-80 59-85 (154)
287 cd01335 Radical_SAM Radical SA 59.8 21 0.00045 24.7 4.4 55 57-119 89-143 (204)
288 PRK13753 dihydropteroate synth 59.7 75 0.0016 25.2 7.8 72 33-119 7-81 (279)
289 TIGR03854 F420_MSMEG_3544 prob 59.4 13 0.00027 29.3 3.5 26 49-74 243-268 (290)
290 cd04733 OYE_like_2_FMN Old yel 59.3 13 0.00028 29.8 3.6 70 53-126 35-108 (338)
291 cd00377 ICL_PEPM Members of th 59.2 40 0.00087 25.8 6.2 27 50-76 157-183 (243)
292 PRK09028 cystathionine beta-ly 59.1 15 0.00032 30.3 4.0 28 97-124 159-186 (394)
293 TIGR02666 moaA molybdenum cofa 59.0 43 0.00092 26.6 6.5 56 56-119 102-158 (334)
294 PF02571 CbiJ: Precorrin-6x re 59.0 27 0.00058 27.1 5.2 65 54-129 11-77 (249)
295 PLN02411 12-oxophytodienoate r 59.0 13 0.00028 30.7 3.6 27 100-126 86-113 (391)
296 COG0159 TrpA Tryptophan syntha 59.0 41 0.00088 26.5 6.2 44 53-119 109-152 (265)
297 TIGR03565 alk_sulf_monoox alka 58.8 14 0.00029 29.8 3.6 27 48-74 302-328 (346)
298 PRK11543 gutQ D-arabinose 5-ph 58.7 26 0.00057 27.5 5.2 61 59-119 61-121 (321)
299 PF12905 Glyco_hydro_101: Endo 58.7 18 0.00039 30.3 4.3 93 25-125 23-117 (425)
300 cd02930 DCR_FMN 2,4-dienoyl-Co 58.7 43 0.00093 27.0 6.6 69 53-125 33-102 (353)
301 PF01261 AP_endonuc_2: Xylose 58.6 52 0.0011 23.3 6.4 63 52-124 70-135 (213)
302 PF10096 DUF2334: Uncharacteri 58.5 81 0.0018 24.1 7.9 65 50-124 13-80 (243)
303 cd07491 Peptidases_S8_7 Peptid 58.3 80 0.0017 24.1 7.7 57 49-119 85-141 (247)
304 PF00218 IGPS: Indole-3-glycer 58.3 24 0.00052 27.5 4.8 40 59-119 124-163 (254)
305 PRK02271 methylenetetrahydrome 58.2 15 0.00032 29.2 3.7 25 49-73 282-306 (325)
306 COG1533 SplB DNA repair photol 58.2 59 0.0013 25.9 7.1 55 46-119 162-217 (297)
307 TIGR03278 methan_mark_10 putat 58.1 57 0.0012 27.2 7.3 66 51-119 181-249 (404)
308 cd08212 RuBisCO_large_I Ribulo 58.0 60 0.0013 27.5 7.4 48 50-119 223-270 (450)
309 PF01791 DeoC: DeoC/LacD famil 57.9 7.8 0.00017 29.3 2.0 48 57-119 80-130 (236)
310 cd06301 PBP1_rhizopine_binding 57.9 53 0.0012 24.3 6.6 47 50-119 40-86 (272)
311 PRK05628 coproporphyrinogen II 57.8 31 0.00068 27.9 5.7 54 57-119 109-163 (375)
312 cd00958 DhnA Class I fructose- 57.7 17 0.00037 27.3 3.9 55 50-119 73-127 (235)
313 TIGR03620 F420_MSMEG_4141 prob 57.5 13 0.00029 29.1 3.3 28 49-76 233-260 (278)
314 PRK05967 cystathionine beta-ly 57.3 16 0.00035 30.2 3.9 28 96-123 161-188 (395)
315 PF15608 PELOTA_1: PELOTA RNA 57.3 15 0.00032 24.7 3.0 23 101-123 67-89 (100)
316 cd02931 ER_like_FMN Enoate red 57.3 55 0.0012 26.8 7.0 68 53-123 35-106 (382)
317 PRK08208 coproporphyrinogen II 57.2 23 0.0005 29.4 4.8 53 57-118 142-194 (430)
318 COG0794 GutQ Predicted sugar p 57.2 36 0.00079 25.7 5.5 61 59-119 58-118 (202)
319 PRK05265 pyridoxine 5'-phospha 56.9 60 0.0013 25.2 6.7 56 57-121 77-133 (239)
320 TIGR02637 RhaS rhamnose ABC tr 56.7 38 0.00082 25.8 5.7 48 51-121 41-88 (302)
321 PRK11059 regulatory protein Cs 56.6 50 0.0011 28.7 7.0 76 30-119 517-608 (640)
322 PRK09810 entericidin A; Provis 56.5 13 0.00028 20.9 2.3 18 1-18 1-19 (41)
323 TIGR02494 PFLE_PFLC glycyl-rad 56.5 42 0.00092 26.0 6.0 61 52-114 231-295 (295)
324 PLN02808 alpha-galactosidase 56.4 32 0.00069 28.6 5.4 60 53-119 49-115 (386)
325 PRK05939 hypothetical protein; 56.3 19 0.00042 29.5 4.2 30 93-122 140-169 (397)
326 COG4943 Predicted signal trans 56.3 14 0.00031 31.6 3.4 18 102-119 459-476 (524)
327 COG3977 Alanine-alpha-ketoisov 56.1 18 0.0004 29.5 3.8 31 99-129 197-227 (417)
328 PRK08247 cystathionine gamma-s 56.1 17 0.00037 29.3 3.8 26 97-122 149-174 (366)
329 PF03932 CutC: CutC family; I 55.8 46 0.001 25.0 5.8 48 54-119 128-175 (201)
330 cd05017 SIS_PGI_PMI_1 The memb 55.8 14 0.0003 24.7 2.8 56 60-119 19-75 (119)
331 PF00490 ALAD: Delta-aminolevu 55.7 24 0.00053 28.6 4.5 29 50-78 54-82 (324)
332 PRK05660 HemN family oxidoredu 55.5 29 0.00064 28.3 5.1 52 57-117 108-159 (378)
333 PRK05926 hypothetical protein; 55.4 22 0.00048 29.1 4.4 27 93-119 199-225 (370)
334 cd02803 OYE_like_FMN_family Ol 55.3 25 0.00054 27.7 4.6 65 54-125 34-102 (327)
335 cd03416 CbiX_SirB_N Sirohydroc 55.3 12 0.00026 24.2 2.3 28 53-80 44-71 (101)
336 TIGR02631 xylA_Arthro xylose i 55.2 38 0.00082 27.9 5.8 57 51-119 30-86 (382)
337 COG0134 TrpC Indole-3-glycerol 55.2 15 0.00033 28.7 3.2 20 100-119 142-161 (254)
338 PRK05434 phosphoglyceromutase; 55.1 35 0.00076 29.3 5.7 51 53-119 96-147 (507)
339 PF01408 GFO_IDH_MocA: Oxidore 55.0 14 0.0003 24.2 2.7 22 98-119 97-118 (120)
340 cd08209 RLP_DK-MTP-1-P-enolase 55.0 51 0.0011 27.4 6.4 37 30-76 191-227 (391)
341 PRK00164 moaA molybdenum cofac 54.9 50 0.0011 26.1 6.3 55 56-119 108-163 (331)
342 PRK09283 delta-aminolevulinic 54.9 68 0.0015 26.1 6.9 26 50-75 56-81 (323)
343 TIGR03557 F420_G6P_family F420 54.8 18 0.00038 28.8 3.7 26 50-75 270-295 (316)
344 COG2179 Predicted hydrolase of 54.7 60 0.0013 24.0 6.1 50 59-121 20-69 (175)
345 TIGR03234 OH-pyruv-isom hydrox 54.5 21 0.00046 26.9 4.0 57 53-119 84-141 (254)
346 PRK07094 biotin synthase; Prov 54.4 68 0.0015 25.2 7.0 32 49-80 191-222 (323)
347 KOG2499|consensus 54.3 14 0.00031 31.7 3.1 27 99-125 248-278 (542)
348 PLN02950 4-alpha-glucanotransf 54.3 34 0.00074 31.6 5.8 28 98-125 280-310 (909)
349 TIGR01324 cysta_beta_ly_B cyst 54.3 20 0.00043 29.3 4.0 28 96-123 147-174 (377)
350 PF12996 DUF3880: DUF based on 54.0 14 0.00029 23.3 2.4 23 57-79 28-50 (79)
351 PF01565 FAD_binding_4: FAD bi 53.9 19 0.00042 24.4 3.3 22 98-119 8-29 (139)
352 PRK10605 N-ethylmaleimide redu 53.8 18 0.00038 29.5 3.6 27 100-126 78-105 (362)
353 PF00290 Trp_syntA: Tryptophan 53.7 27 0.00058 27.4 4.4 43 54-119 103-145 (259)
354 cd04886 ACT_ThrD-II-like C-ter 53.4 42 0.00091 19.3 5.7 63 50-118 10-72 (73)
355 cd04735 OYE_like_4_FMN Old yel 53.4 18 0.00039 29.3 3.5 27 100-126 77-104 (353)
356 PF00289 CPSase_L_chain: Carba 53.4 7.8 0.00017 26.2 1.2 22 56-77 15-36 (110)
357 TIGR00559 pdxJ pyridoxine 5'-p 53.4 74 0.0016 24.7 6.7 55 57-120 74-129 (237)
358 TIGR03554 F420_G6P_DH glucose- 53.3 18 0.0004 28.8 3.5 26 49-74 285-310 (331)
359 PF02581 TMP-TENI: Thiamine mo 53.3 48 0.001 23.9 5.5 22 59-80 108-129 (180)
360 cd02933 OYE_like_FMN Old yello 53.2 19 0.00041 29.1 3.6 27 100-126 76-103 (338)
361 cd00308 enolase_like Enolase-s 53.1 25 0.00054 26.3 4.1 68 51-119 106-201 (229)
362 cd02929 TMADH_HD_FMN Trimethyl 53.0 19 0.0004 29.5 3.6 67 57-126 42-109 (370)
363 TIGR03455 HisG_C-term ATP phos 53.0 19 0.0004 24.0 3.0 24 53-76 74-97 (100)
364 PRK06256 biotin synthase; Vali 52.9 78 0.0017 25.1 7.1 54 50-112 213-266 (336)
365 cd06312 PBP1_ABC_sugar_binding 52.8 83 0.0018 23.3 7.0 48 51-121 42-89 (271)
366 TIGR03470 HpnH hopanoid biosyn 52.8 70 0.0015 25.4 6.8 67 34-119 127-196 (318)
367 PRK05678 succinyl-CoA syntheta 52.7 75 0.0016 25.3 6.9 51 54-125 77-127 (291)
368 PRK08446 coproporphyrinogen II 52.6 42 0.00092 27.0 5.6 52 56-116 98-149 (350)
369 TIGR03700 mena_SCO4494 putativ 52.6 26 0.00056 28.3 4.3 28 92-119 179-206 (351)
370 PRK13347 coproporphyrinogen II 52.5 38 0.00082 28.3 5.4 51 57-116 153-203 (453)
371 PF09370 TIM-br_sig_trns: TIM- 52.4 17 0.00037 28.7 3.1 62 50-119 92-155 (268)
372 cd08206 RuBisCO_large_I_II_III 51.9 49 0.0011 27.7 5.9 38 30-76 199-236 (414)
373 cd06321 PBP1_ABC_sugar_binding 51.8 86 0.0019 23.2 6.9 26 50-75 41-66 (271)
374 PF01964 ThiC: ThiC family; I 51.7 15 0.00033 30.7 2.9 28 101-128 242-271 (420)
375 TIGR01211 ELP3 histone acetylt 51.7 41 0.00088 29.1 5.5 63 56-129 206-268 (522)
376 PRK15108 biotin synthase; Prov 51.7 53 0.0011 26.6 6.0 22 98-119 168-189 (345)
377 cd01539 PBP1_GGBP Periplasmic 51.6 84 0.0018 24.1 7.0 48 51-121 42-89 (303)
378 PF04914 DltD_C: DltD C-termin 51.5 19 0.00041 25.2 3.0 19 101-119 36-54 (130)
379 TIGR03699 mena_SCO4550 menaqui 51.3 17 0.00037 29.0 3.1 26 94-119 174-199 (340)
380 PF15614 WHIM3: WSTF, HB1, Itc 51.3 12 0.00027 21.5 1.6 20 97-116 4-24 (46)
381 PRK14467 ribosomal RNA large s 51.1 1.3E+02 0.0029 24.4 9.0 65 36-119 258-323 (348)
382 PRK11829 biofilm formation reg 51.0 38 0.00082 29.2 5.3 80 32-119 525-614 (660)
383 cd05710 SIS_1 A subgroup of th 50.9 19 0.00042 24.1 2.9 27 93-119 53-79 (120)
384 PRK08599 coproporphyrinogen II 50.9 53 0.0011 26.6 5.9 51 57-116 101-151 (377)
385 cd06305 PBP1_methylthioribose_ 50.5 80 0.0017 23.3 6.5 19 103-121 69-87 (273)
386 PRK00719 alkanesulfonate monoo 50.4 22 0.00047 29.1 3.6 26 49-74 304-329 (378)
387 cd03320 OSBS o-Succinylbenzoat 50.3 18 0.0004 27.7 3.0 33 87-119 199-232 (263)
388 PF03102 NeuB: NeuB family; I 50.1 19 0.00041 27.8 3.0 61 59-119 2-74 (241)
389 PF05368 NmrA: NmrA-like famil 50.1 61 0.0013 23.8 5.8 26 100-125 80-105 (233)
390 COG3669 Alpha-L-fucosidase [Ca 50.1 1.2E+02 0.0027 25.5 7.8 93 29-124 22-124 (430)
391 PF08029 HisG_C: HisG, C-termi 50.0 8.4 0.00018 24.4 0.9 24 54-77 51-74 (75)
392 TIGR00676 fadh2 5,10-methylene 49.8 1.2E+02 0.0026 23.5 9.2 67 51-119 13-91 (272)
393 COG2876 AroA 3-deoxy-D-arabino 49.8 70 0.0015 25.4 6.1 60 49-119 55-114 (286)
394 cd04747 OYE_like_5_FMN Old yel 49.8 69 0.0015 26.2 6.4 68 53-126 33-104 (361)
395 PRK05904 coproporphyrinogen II 49.7 50 0.0011 26.7 5.6 55 56-119 103-158 (353)
396 cd00003 PNPsynthase Pyridoxine 49.4 92 0.002 24.1 6.6 57 56-121 73-130 (234)
397 TIGR02717 AcCoA-syn-alpha acet 49.4 77 0.0017 26.5 6.8 58 52-124 74-131 (447)
398 PF13378 MR_MLE_C: Enolase C-t 49.3 30 0.00064 22.7 3.6 31 89-119 20-51 (111)
399 PRK13209 L-xylulose 5-phosphat 49.3 40 0.00087 25.7 4.8 61 52-122 98-159 (283)
400 TIGR00423 radical SAM domain p 49.2 30 0.00065 27.3 4.2 22 98-119 142-163 (309)
401 cd06309 PBP1_YtfQ_like Peripla 49.2 94 0.002 23.0 6.8 47 53-122 42-88 (273)
402 PF06180 CbiK: Cobalt chelatas 49.2 38 0.00082 26.5 4.6 86 27-113 30-134 (262)
403 TIGR00393 kpsF KpsF/GutQ famil 49.2 31 0.00067 26.2 4.1 60 60-119 20-79 (268)
404 cd06313 PBP1_ABC_sugar_binding 49.1 86 0.0019 23.5 6.6 48 51-121 40-87 (272)
405 PF07555 NAGidase: beta-N-acet 49.0 70 0.0015 25.7 6.2 68 51-125 13-80 (306)
406 PRK13745 anaerobic sulfatase-m 48.8 68 0.0015 26.4 6.3 24 55-78 183-206 (412)
407 COG3622 Hfi Hydroxypyruvate is 48.7 65 0.0014 25.3 5.7 50 54-126 16-65 (260)
408 COG2089 SpsE Sialic acid synth 48.6 42 0.00091 27.4 4.8 100 19-130 64-189 (347)
409 PRK08508 biotin synthase; Prov 48.6 51 0.0011 25.7 5.3 52 56-117 102-153 (279)
410 cd01298 ATZ_TRZ_like TRZ/ATZ f 48.6 28 0.00061 27.8 4.0 24 99-124 192-215 (411)
411 PLN03227 serine palmitoyltrans 48.6 87 0.0019 25.5 6.9 23 102-124 156-178 (392)
412 PF00155 Aminotran_1_2: Aminot 48.5 45 0.00097 26.1 5.1 55 50-119 130-186 (363)
413 TIGR00538 hemN oxygen-independ 48.4 38 0.00082 28.3 4.8 51 57-116 152-202 (455)
414 cd06302 PBP1_LsrB_Quorum_Sensi 48.3 1E+02 0.0022 23.5 6.9 47 53-122 43-89 (298)
415 TIGR02026 BchE magnesium-proto 48.2 47 0.001 28.1 5.4 22 98-119 320-341 (497)
416 TIGR01975 isoAsp_dipep isoaspa 48.2 76 0.0017 26.1 6.5 71 53-125 108-199 (389)
417 PRK10060 RNase II stability mo 48.1 97 0.0021 27.1 7.4 63 50-119 538-616 (663)
418 PLN02509 cystathionine beta-ly 47.9 28 0.0006 29.4 3.9 27 96-122 229-255 (464)
419 PF03740 PdxJ: Pyridoxal phosp 47.7 70 0.0015 24.9 5.8 56 57-121 75-131 (239)
420 TIGR03842 F420_CPS_4043 F420-d 47.6 27 0.00058 27.8 3.7 27 49-75 285-311 (330)
421 cd05005 SIS_PHI Hexulose-6-pho 47.6 1E+02 0.0022 22.0 7.0 55 60-119 53-107 (179)
422 PRK00955 hypothetical protein; 47.5 42 0.00091 29.7 5.0 31 50-80 491-521 (620)
423 cd06300 PBP1_ABC_sugar_binding 47.4 94 0.002 23.0 6.5 46 51-119 45-90 (272)
424 COG1312 UxuA D-mannonate dehyd 47.4 31 0.00067 28.3 3.9 44 52-95 82-138 (362)
425 PRK01278 argD acetylornithine 47.3 60 0.0013 26.1 5.7 51 51-119 164-214 (389)
426 PRK07050 cystathionine beta-ly 47.2 31 0.00068 28.2 4.1 26 97-122 163-188 (394)
427 COG1104 NifS Cysteine sulfinat 47.1 32 0.0007 28.6 4.1 63 53-115 102-172 (386)
428 PLN02763 hydrolase, hydrolyzin 47.1 89 0.0019 29.2 7.2 58 51-119 199-259 (978)
429 cd07567 biotinidase_like bioti 47.0 1.3E+02 0.0028 23.8 7.5 65 50-119 24-106 (299)
430 PRK07269 cystathionine gamma-s 47.0 18 0.0004 29.3 2.7 25 98-122 150-174 (364)
431 TIGR03413 GSH_gloB hydroxyacyl 46.8 45 0.00097 25.4 4.7 62 49-118 138-202 (248)
432 PRK00380 panC pantoate--beta-a 46.7 45 0.00099 26.3 4.8 43 31-74 50-94 (281)
433 PRK05301 pyrroloquinoline quin 46.6 71 0.0015 25.8 6.1 50 50-119 138-187 (378)
434 COG0520 csdA Selenocysteine ly 46.4 24 0.00052 29.2 3.3 58 61-119 131-197 (405)
435 TIGR02171 Fb_sc_TIGR02171 Fibr 46.4 27 0.00059 32.2 3.8 20 100-119 807-826 (912)
436 cd06307 PBP1_uncharacterized_s 46.4 74 0.0016 23.7 5.8 46 51-120 44-89 (275)
437 cd03315 MLE_like Muconate lact 46.4 25 0.00054 26.9 3.2 69 50-119 140-236 (265)
438 cd00609 AAT_like Aspartate ami 46.4 58 0.0012 24.9 5.3 21 99-119 150-170 (350)
439 TIGR03326 rubisco_III ribulose 46.3 52 0.0011 27.6 5.2 27 50-76 221-247 (412)
440 PF03851 UvdE: UV-endonuclease 46.3 68 0.0015 25.4 5.7 62 50-119 42-105 (275)
441 cd00614 CGS_like CGS_like: Cys 46.3 21 0.00045 28.7 2.9 25 98-122 139-163 (369)
442 COG1489 SfsA DNA-binding prote 46.3 54 0.0012 25.4 5.0 53 57-119 158-210 (235)
443 COG1441 MenC O-succinylbenzoat 46.2 22 0.00048 27.8 2.8 27 93-119 235-262 (321)
444 cd08148 RuBisCO_large Ribulose 45.9 52 0.0011 27.1 5.1 27 50-76 204-230 (366)
445 COG1902 NemA NADH:flavin oxido 45.9 31 0.00067 28.3 3.8 25 100-124 82-107 (363)
446 PRK00923 sirohydrochlorin coba 45.8 21 0.00045 24.2 2.5 26 54-79 47-72 (126)
447 TIGR03025 EPS_sugtrans exopoly 45.8 71 0.0015 26.4 6.0 40 59-119 181-220 (445)
448 cd02877 GH18_hevamine_XipI_cla 45.7 59 0.0013 25.6 5.3 58 60-119 18-77 (280)
449 PRK09249 coproporphyrinogen II 45.5 61 0.0013 27.1 5.6 50 57-115 152-201 (453)
450 cd01137 PsaA Metal binding pro 45.5 36 0.00078 26.6 4.0 54 66-119 177-231 (287)
451 PF01380 SIS: SIS domain SIS d 45.4 27 0.00058 23.1 2.9 67 53-119 17-85 (131)
452 KOG3340|consensus 45.3 66 0.0014 26.6 5.5 66 54-119 103-168 (454)
453 COG1797 CobB Cobyrinic acid a, 45.3 26 0.00055 29.7 3.3 64 56-119 261-328 (451)
454 PRK02048 4-hydroxy-3-methylbut 45.2 26 0.00057 30.8 3.4 33 94-126 129-167 (611)
455 PRK06267 hypothetical protein; 45.1 1.1E+02 0.0023 24.8 6.8 54 50-112 179-232 (350)
456 PRK07360 FO synthase subunit 2 44.9 31 0.00067 28.1 3.7 25 95-119 195-219 (371)
457 cd08213 RuBisCO_large_III Ribu 44.8 55 0.0012 27.4 5.1 27 50-76 208-234 (412)
458 PRK07379 coproporphyrinogen II 44.6 71 0.0015 26.3 5.8 54 57-119 116-170 (400)
459 cd06450 DOPA_deC_like DOPA dec 44.5 69 0.0015 24.9 5.5 23 97-119 161-183 (345)
460 PRK05093 argD bifunctional N-s 44.4 74 0.0016 25.8 5.9 51 51-119 173-223 (403)
461 TIGR00190 thiC thiamine biosyn 44.4 19 0.00041 30.2 2.3 26 102-127 244-271 (423)
462 PF04273 DUF442: Putative phos 44.4 76 0.0016 21.4 5.0 63 56-119 17-91 (110)
463 PRK12595 bifunctional 3-deoxy- 44.3 1.3E+02 0.0029 24.6 7.3 58 51-119 130-187 (360)
464 cd03411 Ferrochelatase_N Ferro 44.3 26 0.00056 24.9 2.8 27 54-80 100-126 (159)
465 PRK06294 coproporphyrinogen II 44.2 81 0.0018 25.6 6.0 52 56-116 103-154 (370)
466 COG1647 Esterase/lipase [Gener 44.1 32 0.0007 26.7 3.4 35 94-128 22-56 (243)
467 PF02836 Glyco_hydro_2_C: Glyc 44.1 46 0.00099 25.9 4.4 44 51-119 34-77 (298)
468 cd07585 nitrilase_7 Uncharacte 43.9 1.3E+02 0.0029 22.5 6.9 65 50-119 16-80 (261)
469 TIGR01928 menC_lowGC/arch o-su 43.9 29 0.00062 27.6 3.3 33 87-119 246-279 (324)
470 PRK08445 hypothetical protein; 43.8 30 0.00066 28.0 3.4 27 93-119 174-200 (348)
471 KOG2730|consensus 43.5 45 0.00098 26.0 4.1 40 50-91 150-189 (263)
472 PF09445 Methyltransf_15: RNA 43.4 42 0.00091 24.4 3.8 63 50-119 55-117 (163)
473 TIGR00629 uvde UV damage endon 43.3 60 0.0013 26.2 5.0 62 50-119 49-112 (312)
474 PF04914 DltD_C: DltD C-termin 43.1 29 0.00063 24.3 2.8 29 50-78 33-61 (130)
475 PF03749 SfsA: Sugar fermentat 43.0 51 0.0011 25.1 4.4 52 58-119 148-199 (215)
476 cd08577 PI-PLCc_GDPD_SF_unchar 43.0 30 0.00066 26.4 3.2 19 101-119 185-203 (228)
477 TIGR00288 conserved hypothetic 42.7 27 0.00059 25.4 2.7 22 98-119 113-134 (160)
478 COG0422 ThiC Thiamine biosynth 42.6 13 0.00029 30.9 1.2 27 100-126 243-271 (432)
479 TIGR01212 radical SAM protein, 42.4 62 0.0013 25.6 5.0 27 99-127 161-187 (302)
480 TIGR03555 F420_mer 5,10-methyl 42.4 33 0.00072 27.2 3.5 26 49-74 281-306 (325)
481 cd01320 ADA Adenosine deaminas 42.3 42 0.00091 26.3 4.0 28 97-126 169-196 (325)
482 PRK05968 hypothetical protein; 42.3 43 0.00094 27.3 4.2 27 96-122 159-185 (389)
483 PRK14468 ribosomal RNA large s 42.2 1.6E+02 0.0035 23.8 7.4 55 52-119 261-315 (343)
484 cd06322 PBP1_ABC_sugar_binding 42.1 1.4E+02 0.003 21.9 6.7 46 53-121 42-87 (267)
485 PRK13352 thiamine biosynthesis 42.0 21 0.00046 30.0 2.3 26 102-127 247-274 (431)
486 KOG4730|consensus 42.0 33 0.00071 29.3 3.4 21 99-119 58-78 (518)
487 cd03414 CbiX_SirB_C Sirohydroc 41.9 26 0.00057 23.2 2.4 26 54-79 46-71 (117)
488 PRK11337 DNA-binding transcrip 41.9 28 0.00061 27.0 2.9 60 60-119 160-219 (292)
489 PLN02460 indole-3-glycerol-pho 41.9 32 0.0007 28.1 3.3 20 100-119 216-235 (338)
490 PRK05799 coproporphyrinogen II 41.8 95 0.0021 25.0 6.1 51 57-116 100-150 (374)
491 cd06289 PBP1_MalI_like Ligand- 41.8 1.4E+02 0.003 21.8 6.7 26 51-76 40-65 (268)
492 TIGR02351 thiH thiazole biosyn 41.6 54 0.0012 26.7 4.6 27 90-116 188-216 (366)
493 PRK09989 hypothetical protein; 41.6 1.3E+02 0.0028 22.7 6.5 57 53-119 85-142 (258)
494 PRK12677 xylose isomerase; Pro 41.6 74 0.0016 26.2 5.4 62 52-119 113-177 (384)
495 PRK15108 biotin synthase; Prov 41.5 1.3E+02 0.0029 24.3 6.8 54 50-119 76-129 (345)
496 cd00019 AP2Ec AP endonuclease 41.5 1.3E+02 0.0028 22.9 6.6 61 51-122 83-144 (279)
497 PRK14508 4-alpha-glucanotransf 41.4 98 0.0021 26.5 6.3 27 97-123 22-49 (497)
498 KOG1838|consensus 41.3 37 0.0008 28.5 3.6 25 102-126 142-166 (409)
499 PRK13957 indole-3-glycerol-pho 41.2 35 0.00076 26.6 3.3 20 100-119 137-156 (247)
500 COG3142 CutC Uncharacterized p 41.2 88 0.0019 24.3 5.4 59 50-129 70-128 (241)
No 1
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=99.97 E-value=1.5e-31 Score=225.74 Aligned_cols=109 Identities=42% Similarity=0.915 Sum_probs=103.8
Q ss_pred CCccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHH
Q psy12953 23 PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHD 102 (136)
Q Consensus 23 ~~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~ 102 (136)
..+.||++.+|||+++++|.+++++++|||+|++++|+||++||||+|||+||++++..++||++.||+.|||+|||.++
T Consensus 3 ~~~~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d 82 (551)
T PRK10933 3 NLPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDD 82 (551)
T ss_pred CcchhhhcCeEEEEEchHhhcCCCCCCcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHH
Confidence 45789999999999999999999999999999999999999999999999999998887899999999999999999999
Q ss_pred HHHHHHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953 103 FEILIEEAHSRGKPKRT---FREVTKSFANNQ 131 (136)
Q Consensus 103 ~~~lv~~ah~~Gi~vil---~nh~~~~~~~~~ 131 (136)
|++||++||++||+||+ +||++.+|++++
T Consensus 83 ~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~ 114 (551)
T PRK10933 83 FDELVAQAKSRGIRIILDMVFNHTSTQHAWFR 114 (551)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCccCchhHHH
Confidence 99999999999999999 999999887643
No 2
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=99.97 E-value=2.2e-31 Score=224.21 Aligned_cols=105 Identities=39% Similarity=0.744 Sum_probs=101.1
Q ss_pred cccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953 26 EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEI 105 (136)
Q Consensus 26 ~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~ 105 (136)
.||++.+||||++++|.+++++++|||+|++++|+||++||||+|||+||++++..++||++.||++|||+|||.++|++
T Consensus 1 ~W~~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~ 80 (539)
T TIGR02456 1 LWYKDAVFYEVHVRSFFDSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKD 80 (539)
T ss_pred CccccceEEEEehhHhhcCCCCCccCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999887899999999999999999999999
Q ss_pred HHHHHHHCCCcEEE---eccCCCccCCC
Q psy12953 106 LIEEAHSRGKPKRT---FREVTKSFANN 130 (136)
Q Consensus 106 lv~~ah~~Gi~vil---~nh~~~~~~~~ 130 (136)
||++||++||+||+ +||++.+|+.+
T Consensus 81 Lv~~ah~~Gi~vilD~V~NH~s~~~~~f 108 (539)
T TIGR02456 81 FVDEAHARGMRVIIDLVLNHTSDQHPWF 108 (539)
T ss_pred HHHHHHHCCCEEEEEeccCcCCCCCHHH
Confidence 99999999999999 99999988643
No 3
>PRK10785 maltodextrin glucosidase; Provisional
Probab=99.97 E-value=3.1e-31 Score=225.60 Aligned_cols=108 Identities=28% Similarity=0.466 Sum_probs=99.6
Q ss_pred CCCccccCCceEEEEecccccCcCCC-----------------------------------CCCCHHHHHHhHHHHHHcC
Q psy12953 22 LPQKEWWQTAIMYQIYPRSFRDVNGD-----------------------------------GTGDMRGITEKLDHFVDLG 66 (136)
Q Consensus 22 ~~~~~w~~~~~iY~v~~~~f~~~~~~-----------------------------------~~g~~~~l~~~l~~l~~lG 66 (136)
.+.|.|+++.+||||+|++|.++++. -+|||+|++++|+||++||
T Consensus 113 ~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~kLdYL~~LG 192 (598)
T PRK10785 113 DQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLG 192 (598)
T ss_pred CCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCcccccCcCCCcccccccccccCcCHHHHHHHHHHHHHcC
Confidence 56789999999999999999876641 0699999999999999999
Q ss_pred CcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCCC
Q psy12953 67 IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFANN 130 (136)
Q Consensus 67 ~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~ 130 (136)
||+|||+||+++++ .|||++.||++|||+|||.++|++||++||++||+||+ +||++.+|+++
T Consensus 193 v~~I~L~Pif~s~s-~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f 258 (598)
T PRK10785 193 VTALYLNPIFTAPS-VHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWF 258 (598)
T ss_pred CCEEEeCCcccCCC-CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHH
Confidence 99999999999876 59999999999999999999999999999999999999 99999988654
No 4
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=99.97 E-value=2.1e-30 Score=218.39 Aligned_cols=104 Identities=48% Similarity=0.939 Sum_probs=100.7
Q ss_pred ccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHH
Q psy12953 27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106 (136)
Q Consensus 27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~l 106 (136)
||++.+|||+++++|.++++++.|+++|++++|+||++||||+|||+||++++..++||++.||++|||+|||.++|++|
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~l 80 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTGDGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEEL 80 (543)
T ss_pred CcccCEEEEEEhHHHhcCCCCCccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998878899999999999999999999999
Q ss_pred HHHHHHCCCcEEE---eccCCCccCCC
Q psy12953 107 IEEAHSRGKPKRT---FREVTKSFANN 130 (136)
Q Consensus 107 v~~ah~~Gi~vil---~nh~~~~~~~~ 130 (136)
|++||++||+||+ +||++.+|+++
T Consensus 81 v~~ah~~gi~vilD~v~NH~~~~~~~f 107 (543)
T TIGR02403 81 VSEAKKRNIKIMLDMVFNHTSTEHEWF 107 (543)
T ss_pred HHHHHHCCCEEEEEECccccccchHHH
Confidence 9999999999999 99999988754
No 5
>PRK09505 malS alpha-amylase; Reviewed
Probab=99.95 E-value=2e-28 Score=210.29 Aligned_cols=112 Identities=29% Similarity=0.482 Sum_probs=99.0
Q ss_pred hhhccCCCCCccccCCceEEEEecccccCcCCC----------C--------CCCHHHHHHhHHHHHHcCCcEEEEcCCc
Q psy12953 15 LVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGD----------G--------TGDMRGITEKLDHFVDLGIESLWIQPFY 76 (136)
Q Consensus 15 ~~~~~~~~~~~~w~~~~~iY~v~~~~f~~~~~~----------~--------~g~~~~l~~~l~~l~~lG~~~I~l~Pi~ 76 (136)
+..++...+.+.||++.+||||++++|.+++.. + +|||+|++++|+||++||||+|||+||+
T Consensus 174 le~~~~~~~~~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~ 253 (683)
T PRK09505 174 LERAETEAAAPFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPL 253 (683)
T ss_pred eeecccCCCCChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCccc
Confidence 333456678899999999999999999877631 1 5999999999999999999999999999
Q ss_pred cCC--------------CCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCc
Q psy12953 77 PAG--------------GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKS 126 (136)
Q Consensus 77 ~~~--------------~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~ 126 (136)
++. ..++||++.||+.+||+|||.+||++||++||++||+||+ +||++..
T Consensus 254 ~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~ 320 (683)
T PRK09505 254 EQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYA 320 (683)
T ss_pred cccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCccc
Confidence 862 2468999999999999999999999999999999999999 9999953
No 6
>smart00642 Aamy Alpha-amylase domain.
Probab=99.95 E-value=7e-28 Score=175.96 Aligned_cols=91 Identities=44% Similarity=0.872 Sum_probs=87.4
Q ss_pred EEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC---CCCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Q psy12953 35 QIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG---ADLGYDVSNYVDVDPLFGDMHDFEILIEEAH 111 (136)
Q Consensus 35 ~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~---~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah 111 (136)
|+++++|.++++++.|+|++++++|+||++||||+|||+|+++++. .++||++.||++++|+|||.++|++||++||
T Consensus 1 qi~~~~F~~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h 80 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAH 80 (166)
T ss_pred CeeeccccCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999986 6899999999999999999999999999999
Q ss_pred HCCCcEEE---eccCCC
Q psy12953 112 SRGKPKRT---FREVTK 125 (136)
Q Consensus 112 ~~Gi~vil---~nh~~~ 125 (136)
++||+||+ +||++.
T Consensus 81 ~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 81 ARGIKVILDVVINHTSD 97 (166)
T ss_pred HCCCEEEEEECCCCCCC
Confidence 99999999 888874
No 7
>PRK12313 glycogen branching enzyme; Provisional
Probab=99.94 E-value=6.4e-27 Score=200.30 Aligned_cols=101 Identities=16% Similarity=0.252 Sum_probs=93.4
Q ss_pred ccCCceEEEEecccccCcCCCCCCCHHHHHHhH-HHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHH
Q psy12953 27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKL-DHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFE 104 (136)
Q Consensus 27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l-~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~ 104 (136)
+.++.+|||+|+++|.++++++.|+|++++++| +||++||||+|||+||++++. .+|||++.||+++||+|||+++|+
T Consensus 144 ~~~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k 223 (633)
T PRK12313 144 LDRPISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFM 223 (633)
T ss_pred CCCCceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHH
Confidence 446789999999999988777789999999995 999999999999999999986 579999999999999999999999
Q ss_pred HHHHHHHHCCCcEEE---eccCCCcc
Q psy12953 105 ILIEEAHSRGKPKRT---FREVTKSF 127 (136)
Q Consensus 105 ~lv~~ah~~Gi~vil---~nh~~~~~ 127 (136)
+||++||++||+||| +||++.++
T Consensus 224 ~lv~~~H~~Gi~VilD~V~nH~~~~~ 249 (633)
T PRK12313 224 YLVDALHQNGIGVILDWVPGHFPKDD 249 (633)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCc
Confidence 999999999999999 99998653
No 8
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=99.94 E-value=1.5e-26 Score=195.12 Aligned_cols=95 Identities=23% Similarity=0.359 Sum_probs=89.2
Q ss_pred cCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHH
Q psy12953 28 WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEIL 106 (136)
Q Consensus 28 ~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~l 106 (136)
+++.+|||+|++.|+. .|+|++++++|+||++||||+|||+||++.+. .+|||++.||++++++||+.+||++|
T Consensus 91 ~~~~viYE~hv~~f~~-----~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~l 165 (542)
T TIGR02402 91 LEEAVIYELHVGTFTP-----EGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKAL 165 (542)
T ss_pred ccccEEEEEEhhhcCC-----CCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHH
Confidence 6899999999999975 39999999999999999999999999999875 67999999999999999999999999
Q ss_pred HHHHHHCCCcEEE---eccCCCcc
Q psy12953 107 IEEAHSRGKPKRT---FREVTKSF 127 (136)
Q Consensus 107 v~~ah~~Gi~vil---~nh~~~~~ 127 (136)
|++||++||+||+ +||++.++
T Consensus 166 V~~aH~~Gi~VilD~V~NH~~~~~ 189 (542)
T TIGR02402 166 VDAAHGLGLGVILDVVYNHFGPEG 189 (542)
T ss_pred HHHHHHCCCEEEEEEccCCCCCcc
Confidence 9999999999999 99987643
No 9
>KOG0471|consensus
Probab=99.94 E-value=6e-27 Score=197.51 Aligned_cols=109 Identities=38% Similarity=0.761 Sum_probs=104.8
Q ss_pred CccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHH
Q psy12953 24 QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDF 103 (136)
Q Consensus 24 ~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~ 103 (136)
.++||++.++||+++++|.++++++.|+++|+.++|+||+++|||+||++||++++..++||++.||+.++|+|||.++|
T Consensus 11 ~~~~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf 90 (545)
T KOG0471|consen 11 SPDWWKTESIYQIYPDSFADSDGDGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDF 90 (545)
T ss_pred CchhhhcCceeEEeccccccccCCCccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred HHHHHHHHHCCCcEEE---eccCCCccCCCCC
Q psy12953 104 EILIEEAHSRGKPKRT---FREVTKSFANNQG 132 (136)
Q Consensus 104 ~~lv~~ah~~Gi~vil---~nh~~~~~~~~~~ 132 (136)
++|++++|++||++|+ .||++..|+++..
T Consensus 91 ~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~ 122 (545)
T KOG0471|consen 91 KELILAMHKLGIKIIADLVINHRSDEVEWFKA 122 (545)
T ss_pred HHHHHHHhhcceEEEEeeccccCCcccccccc
Confidence 9999999999999999 9999987776654
No 10
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.7e-26 Score=190.28 Aligned_cols=101 Identities=48% Similarity=0.893 Sum_probs=96.4
Q ss_pred ceEEEEecccccCcCC------CCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHH
Q psy12953 31 AIMYQIYPRSFRDVNG------DGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFE 104 (136)
Q Consensus 31 ~~iY~v~~~~f~~~~~------~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~ 104 (136)
.++||+++++|.++++ +|+|||+|++++|+||++|||++|||+||++++..++||++.||+.+||++||.++|+
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~ 80 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFK 80 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHH
Confidence 4799999999999998 8889999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953 105 ILIEEAHSRGKPKRT---FREVTKSFANNQ 131 (136)
Q Consensus 105 ~lv~~ah~~Gi~vil---~nh~~~~~~~~~ 131 (136)
+|+++||++||+||+ +||++..|+.+.
T Consensus 81 ~li~~~H~~gi~vi~D~V~NH~s~~~~~f~ 110 (505)
T COG0366 81 ELVEEAHKRGIKVILDLVFNHTSDEHPWFK 110 (505)
T ss_pred HHHHHHHHCCCEEEEEeccCcCCCccHHHH
Confidence 999999999999999 899999988643
No 11
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.93 E-value=5.2e-26 Score=197.21 Aligned_cols=99 Identities=18% Similarity=0.288 Sum_probs=91.4
Q ss_pred cCCceEEEEecccccCc-CCCCCCCHHHHHHhH-HHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHH
Q psy12953 28 WQTAIMYQIYPRSFRDV-NGDGTGDMRGITEKL-DHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFE 104 (136)
Q Consensus 28 ~~~~~iY~v~~~~f~~~-~~~~~g~~~~l~~~l-~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~ 104 (136)
+++.+|||+|+++|.++ ++++.|+|++++++| +||++||||+|||+||++++. .+|||++.||++++|+|||+++|+
T Consensus 239 ~~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk 318 (726)
T PRK05402 239 DAPISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFR 318 (726)
T ss_pred cCCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHH
Confidence 46689999999999876 566679999999996 999999999999999999875 579999999999999999999999
Q ss_pred HHHHHHHHCCCcEEE---eccCCCc
Q psy12953 105 ILIEEAHSRGKPKRT---FREVTKS 126 (136)
Q Consensus 105 ~lv~~ah~~Gi~vil---~nh~~~~ 126 (136)
+||++||++||+||| +||++.+
T Consensus 319 ~lV~~~H~~Gi~VilD~V~NH~~~~ 343 (726)
T PRK05402 319 YFVDACHQAGIGVILDWVPAHFPKD 343 (726)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCC
Confidence 999999999999999 9999764
No 12
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=99.93 E-value=1.7e-25 Score=191.00 Aligned_cols=96 Identities=20% Similarity=0.298 Sum_probs=88.3
Q ss_pred ccCCceEEEEecccccCcCCCCCCCHHHHHHhH-HHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHH
Q psy12953 27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKL-DHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFE 104 (136)
Q Consensus 27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l-~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~ 104 (136)
+.++.+|||+|+++|..+ |+|++++++| +||++||||+|||+||++++. .+|||++.||++++++|||++||+
T Consensus 135 ~~~~~~iYe~hv~~~~~~-----g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk 209 (613)
T TIGR01515 135 YEKPVSIYELHLGSWRHG-----LSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFM 209 (613)
T ss_pred ccCCceEEEEehhhccCC-----CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHH
Confidence 344679999999999753 8999999996 999999999999999999875 569999999999999999999999
Q ss_pred HHHHHHHHCCCcEEE---eccCCCcc
Q psy12953 105 ILIEEAHSRGKPKRT---FREVTKSF 127 (136)
Q Consensus 105 ~lv~~ah~~Gi~vil---~nh~~~~~ 127 (136)
+||++||++||+||| +||++.++
T Consensus 210 ~lV~~~H~~Gi~VilD~V~NH~~~~~ 235 (613)
T TIGR01515 210 YFVDACHQAGIGVILDWVPGHFPKDD 235 (613)
T ss_pred HHHHHHHHCCCEEEEEecccCcCCcc
Confidence 999999999999999 99998654
No 13
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=99.93 E-value=1.8e-26 Score=178.19 Aligned_cols=80 Identities=39% Similarity=0.738 Sum_probs=76.3
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCc
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKS 126 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~ 126 (136)
|||+|++++|+||++||||+|||+||++++..++||++.||++|||+|||.+||++||++||++||+||+ +||++.+
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccc
Confidence 7999999999999999999999999999887789999999999999999999999999999999999999 9999998
Q ss_pred cCC
Q psy12953 127 FAN 129 (136)
Q Consensus 127 ~~~ 129 (136)
|+.
T Consensus 81 ~~~ 83 (316)
T PF00128_consen 81 HPW 83 (316)
T ss_dssp SHH
T ss_pred ccc
Confidence 875
No 14
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=99.92 E-value=2.8e-25 Score=191.44 Aligned_cols=103 Identities=17% Similarity=0.414 Sum_probs=91.1
Q ss_pred cccCCceEEEEecccccCcCC----CCCCCHHHHHHh--HHHHHHcCCcEEEEcCCccCCC----------CCCCCCccC
Q psy12953 26 EWWQTAIMYQIYPRSFRDVNG----DGTGDMRGITEK--LDHFVDLGIESLWIQPFYPAGG----------ADLGYDVSN 89 (136)
Q Consensus 26 ~w~~~~~iY~v~~~~f~~~~~----~~~g~~~~l~~~--l~~l~~lG~~~I~l~Pi~~~~~----------~~~gY~~~d 89 (136)
..|++.+|||+|+++|+..++ ...|+|+|++++ |+||++||||+|||+||++... .+|||++.|
T Consensus 151 ~~~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~ 230 (688)
T TIGR02100 151 TPWEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLG 230 (688)
T ss_pred CCccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCccc
Confidence 357999999999999986533 347999999985 9999999999999999998753 359999999
Q ss_pred CCCCCCCC---CCHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953 90 YVDVDPLF---GDMHDFEILIEEAHSRGKPKRT---FREVTKSFA 128 (136)
Q Consensus 90 ~~~vd~~~---Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~ 128 (136)
|+++|++| |+.+|||+||++||++||+||| +||++.++.
T Consensus 231 y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~ 275 (688)
T TIGR02100 231 FFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNE 275 (688)
T ss_pred ccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCC
Confidence 99999999 5789999999999999999999 999987543
No 15
>PRK03705 glycogen debranching enzyme; Provisional
Probab=99.92 E-value=4.3e-25 Score=189.44 Aligned_cols=101 Identities=17% Similarity=0.333 Sum_probs=89.3
Q ss_pred ccccCCceEEEEecccccCcCC----CCCCCHHHHHH--hHHHHHHcCCcEEEEcCCccCCC----------CCCCCCcc
Q psy12953 25 KEWWQTAIMYQIYPRSFRDVNG----DGTGDMRGITE--KLDHFVDLGIESLWIQPFYPAGG----------ADLGYDVS 88 (136)
Q Consensus 25 ~~w~~~~~iY~v~~~~f~~~~~----~~~g~~~~l~~--~l~~l~~lG~~~I~l~Pi~~~~~----------~~~gY~~~ 88 (136)
...|++.+|||+|++.|+..++ +..|+|.++++ +|+||++||||+|||+||++..+ .+|||++.
T Consensus 145 ~~~~~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~ 224 (658)
T PRK03705 145 RTPWGSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPL 224 (658)
T ss_pred CCCccccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccc
Confidence 3457899999999999986432 34699999997 59999999999999999998743 46999999
Q ss_pred CCCCCCCCCCCH-----HHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953 89 NYVDVDPLFGDM-----HDFEILIEEAHSRGKPKRT---FREVTK 125 (136)
Q Consensus 89 d~~~vd~~~Gt~-----~~~~~lv~~ah~~Gi~vil---~nh~~~ 125 (136)
||+++|++|||. +|||+||++||++||+||| +||++.
T Consensus 225 ~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~ 269 (658)
T PRK03705 225 AMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAE 269 (658)
T ss_pred cccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccC
Confidence 999999999985 7999999999999999999 999985
No 16
>PRK14706 glycogen branching enzyme; Provisional
Probab=99.91 E-value=2.6e-24 Score=184.19 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=89.8
Q ss_pred cCCceEEEEecccccCcCCCCCCCHHHHHHhH-HHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953 28 WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKL-DHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEI 105 (136)
Q Consensus 28 ~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l-~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~ 105 (136)
.+..+|||+|+++|+..++..-++|++++++| +||++||||+|+|+||++.+. .+|||++.+|++++++||+++||++
T Consensus 142 ~~~~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~ 221 (639)
T PRK14706 142 DQPISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKY 221 (639)
T ss_pred CCCcEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHH
Confidence 34589999999999865544458999999996 899999999999999999876 5799999999999999999999999
Q ss_pred HHHHHHHCCCcEEE---eccCCCc
Q psy12953 106 LIEEAHSRGKPKRT---FREVTKS 126 (136)
Q Consensus 106 lv~~ah~~Gi~vil---~nh~~~~ 126 (136)
||++||++||+||+ +||++.+
T Consensus 222 lv~~~H~~gi~VilD~v~nH~~~~ 245 (639)
T PRK14706 222 LVNHLHGLGIGVILDWVPGHFPTD 245 (639)
T ss_pred HHHHHHHCCCEEEEEecccccCcc
Confidence 99999999999999 9998764
No 17
>PRK12568 glycogen branching enzyme; Provisional
Probab=99.91 E-value=3.8e-24 Score=184.41 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=92.1
Q ss_pred ccCCceEEEEecccccCcCCCCCCCHHHHHHh-HHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHH
Q psy12953 27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEK-LDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFE 104 (136)
Q Consensus 27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~-l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~ 104 (136)
..++.+|||+|+++|+.+++++.+++++++++ |+||++||||+|+|+||++++. .+|||++.+|++++++||++++|+
T Consensus 243 ~~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk 322 (730)
T PRK12568 243 VPAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFA 322 (730)
T ss_pred CCCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHH
Confidence 45678999999999997766667899999998 5999999999999999999876 579999999999999999999999
Q ss_pred HHHHHHHHCCCcEEE---eccCCCc
Q psy12953 105 ILIEEAHSRGKPKRT---FREVTKS 126 (136)
Q Consensus 105 ~lv~~ah~~Gi~vil---~nh~~~~ 126 (136)
+||++||++||+||+ +||++.+
T Consensus 323 ~lV~~~H~~Gi~VIlD~V~nH~~~d 347 (730)
T PRK12568 323 QFVDACHRAGIGVILDWVSAHFPDD 347 (730)
T ss_pred HHHHHHHHCCCEEEEEeccccCCcc
Confidence 999999999999999 9998875
No 18
>PLN02960 alpha-amylase
Probab=99.91 E-value=3.8e-24 Score=185.93 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=91.3
Q ss_pred ccccCCceEEEEecccccCcCCCCCCCHHHHHHh-HHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHH
Q psy12953 25 KEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEK-LDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHD 102 (136)
Q Consensus 25 ~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~-l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~ 102 (136)
+.++++.+|||+|++.|.. +.+.|+|++++++ |+||++||||+|||+||++.+. .+|||+++||++++++|||+++
T Consensus 390 p~~~~~~vIYElHvg~~~~--e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~d 467 (897)
T PLN02960 390 PKVPKSLRIYECHVGISGS--EPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDD 467 (897)
T ss_pred CCCCCCcEEEEEecccccC--CCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHH
Confidence 3456788999999998853 3456899999976 9999999999999999999876 6799999999999999999999
Q ss_pred HHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953 103 FEILIEEAHSRGKPKRT---FREVTKSFA 128 (136)
Q Consensus 103 ~~~lv~~ah~~Gi~vil---~nh~~~~~~ 128 (136)
|++||++||++||+||| +||++.++.
T Consensus 468 fk~LVd~aH~~GI~VILDvV~NH~~~d~~ 496 (897)
T PLN02960 468 FKRLVDEAHGLGLLVFLDIVHSYAAADEM 496 (897)
T ss_pred HHHHHHHHHHCCCEEEEEecccccCCccc
Confidence 99999999999999999 899988753
No 19
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=99.91 E-value=1.6e-24 Score=184.71 Aligned_cols=101 Identities=25% Similarity=0.442 Sum_probs=86.9
Q ss_pred ccccCCceEEEEecccccCcCCCC---CCCHHHHHHh-----------HHHHHHcCCcEEEEcCCccCCC---------C
Q psy12953 25 KEWWQTAIMYQIYPRSFRDVNGDG---TGDMRGITEK-----------LDHFVDLGIESLWIQPFYPAGG---------A 81 (136)
Q Consensus 25 ~~w~~~~~iY~v~~~~f~~~~~~~---~g~~~~l~~~-----------l~~l~~lG~~~I~l~Pi~~~~~---------~ 81 (136)
..-+++.+|||+|++.|+..++++ .|+|.+++++ |+||++||||+|||+||++.++ .
T Consensus 122 ~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~ 201 (605)
T TIGR02104 122 LENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAY 201 (605)
T ss_pred CCChhHcEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCC
Confidence 344567899999999998655433 5777777765 9999999999999999999764 3
Q ss_pred CCCCCccCCCCCCCCCCC--------HHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953 82 DLGYDVSNYVDVDPLFGD--------MHDFEILIEEAHSRGKPKRT---FREVTK 125 (136)
Q Consensus 82 ~~gY~~~d~~~vd~~~Gt--------~~~~~~lv~~ah~~Gi~vil---~nh~~~ 125 (136)
+|||++.||++++++||+ .+|||+||++||++||+||| +||++.
T Consensus 202 ~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~ 256 (605)
T TIGR02104 202 NWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYS 256 (605)
T ss_pred CCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccC
Confidence 599999999999999987 48999999999999999999 999963
No 20
>PLN00196 alpha-amylase; Provisional
Probab=99.90 E-value=4.3e-23 Score=169.82 Aligned_cols=100 Identities=20% Similarity=0.361 Sum_probs=86.4
Q ss_pred CCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC-CCCCCHHHHHHHH
Q psy12953 29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD-PLFGDMHDFEILI 107 (136)
Q Consensus 29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt~~~~~~lv 107 (136)
.+.+|+|-+.. +.....+|++++++++|+||++||||+|||+|++++.+ ++||++.||+++| ++|||.+||++||
T Consensus 23 ~~~v~~Q~F~W---~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s-~hGY~~~D~y~ld~~~fGt~~elk~Lv 98 (428)
T PLN00196 23 AGQVLFQGFNW---ESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVS-EQGYMPGRLYDLDASKYGNEAQLKSLI 98 (428)
T ss_pred CCCEEEEeecc---CCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCcccCCCHHHHHHHH
Confidence 56788886552 22233458999999999999999999999999998864 6999999999999 6999999999999
Q ss_pred HHHHHCCCcEEE---eccCCCccCCCCC
Q psy12953 108 EEAHSRGKPKRT---FREVTKSFANNQG 132 (136)
Q Consensus 108 ~~ah~~Gi~vil---~nh~~~~~~~~~~ 132 (136)
++||++||+||+ +||++.++.+..+
T Consensus 99 ~~aH~~GIkVilDvV~NH~~~~~~~~~~ 126 (428)
T PLN00196 99 EAFHGKGVQVIADIVINHRTAEHKDGRG 126 (428)
T ss_pred HHHHHCCCEEEEEECccCcccccccCCC
Confidence 999999999999 9999988776544
No 21
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.7e-23 Score=177.53 Aligned_cols=97 Identities=23% Similarity=0.394 Sum_probs=89.4
Q ss_pred ccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953 27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEI 105 (136)
Q Consensus 27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~ 105 (136)
.|++.+|||+|+.+|+. + ...|+++..+++|+||++||||+|.||||.+.+. .+|||+++.|+++.++|||+++||+
T Consensus 141 ~~e~~vIYElHvGs~~~-~-~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~ 218 (628)
T COG0296 141 FWEPIVIYELHVGSFTP-D-RFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKA 218 (628)
T ss_pred CCCCceEEEEEeeeccC-C-CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHH
Confidence 37789999999999987 3 5568999999999999999999999999999988 7899999999999999999999999
Q ss_pred HHHHHHHCCCcEEE---eccCCC
Q psy12953 106 LIEEAHSRGKPKRT---FREVTK 125 (136)
Q Consensus 106 lv~~ah~~Gi~vil---~nh~~~ 125 (136)
||++||++||.||| +||.+.
T Consensus 219 fVD~aH~~GIgViLD~V~~HF~~ 241 (628)
T COG0296 219 LVDAAHQAGIGVILDWVPNHFPP 241 (628)
T ss_pred HHHHHHHcCCEEEEEecCCcCCC
Confidence 99999999999999 666554
No 22
>PRK14705 glycogen branching enzyme; Provisional
Probab=99.90 E-value=1.5e-23 Score=188.17 Aligned_cols=94 Identities=20% Similarity=0.269 Sum_probs=86.9
Q ss_pred cCCceEEEEecccccCcCCCCCCCHHHHHHh-HHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953 28 WQTAIMYQIYPRSFRDVNGDGTGDMRGITEK-LDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEI 105 (136)
Q Consensus 28 ~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~-l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~ 105 (136)
.+..+|||+|+++|... ++|+++.++ |+|||+||||+|+||||++++. .+|||++.+|++++++|||++||++
T Consensus 745 ~~p~~IYEvHvgsf~~~-----~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~ 819 (1224)
T PRK14705 745 NSPMSVYEVHLGSWRLG-----LGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRF 819 (1224)
T ss_pred cCCcEEEEEEecccccC-----CchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHH
Confidence 46789999999999762 789999988 6999999999999999999876 6799999999999999999999999
Q ss_pred HHHHHHHCCCcEEE---eccCCCc
Q psy12953 106 LIEEAHSRGKPKRT---FREVTKS 126 (136)
Q Consensus 106 lv~~ah~~Gi~vil---~nh~~~~ 126 (136)
||++||++||+||+ +||.+.+
T Consensus 820 lVd~~H~~GI~VILD~V~nH~~~d 843 (1224)
T PRK14705 820 LVDSLHQAGIGVLLDWVPAHFPKD 843 (1224)
T ss_pred HHHHHHHCCCEEEEEeccccCCcc
Confidence 99999999999999 9998654
No 23
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=99.89 E-value=3.1e-23 Score=184.97 Aligned_cols=102 Identities=26% Similarity=0.467 Sum_probs=88.2
Q ss_pred ccCCceEEEEecccccCcCC------CCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCC-------------------CC
Q psy12953 27 WWQTAIMYQIYPRSFRDVNG------DGTGDMRGITEKLDHFVDLGIESLWIQPFYPAG-------------------GA 81 (136)
Q Consensus 27 w~~~~~iY~v~~~~f~~~~~------~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~-------------------~~ 81 (136)
.+++.+|||+|++.|+.... ...|+|++++++|+||++||||+|||+||++.. .+
T Consensus 448 ~~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~y 527 (1111)
T TIGR02102 448 KREDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNY 527 (1111)
T ss_pred CccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCcccccccccccccccccccccccccc
Confidence 36788999999999984322 136999999999999999999999999998621 13
Q ss_pred CCCCCccCCCCCCCCCCC--------HHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953 82 DLGYDVSNYVDVDPLFGD--------MHDFEILIEEAHSRGKPKRT---FREVTKSFA 128 (136)
Q Consensus 82 ~~gY~~~d~~~vd~~~Gt--------~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~ 128 (136)
+|||++.+|++++++||+ .+|||+||++||++||+||| +||++..++
T Consensus 528 nWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~ 585 (1111)
T TIGR02102 528 NWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYI 585 (1111)
T ss_pred ccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccccccc
Confidence 599999999999999998 48999999999999999999 999986543
No 24
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=99.89 E-value=6.3e-23 Score=185.34 Aligned_cols=104 Identities=20% Similarity=0.380 Sum_probs=89.4
Q ss_pred ccccCCceEEEEecccccCcCC----CCCCCHHHHH--HhHHHHHHcCCcEEEEcCCccCCC----------CCCCCCcc
Q psy12953 25 KEWWQTAIMYQIYPRSFRDVNG----DGTGDMRGIT--EKLDHFVDLGIESLWIQPFYPAGG----------ADLGYDVS 88 (136)
Q Consensus 25 ~~w~~~~~iY~v~~~~f~~~~~----~~~g~~~~l~--~~l~~l~~lG~~~I~l~Pi~~~~~----------~~~gY~~~ 88 (136)
..-|++.+|||+|+++|+.... +..|+++++. +.|+||++||||+|||+||++... ++|||++.
T Consensus 153 ~~~~~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~ 232 (1221)
T PRK14510 153 HGDWDDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTV 232 (1221)
T ss_pred CCCcccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCC
Confidence 3457899999999999985332 3357777777 667899999999999999998753 35899999
Q ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953 89 NYVDVDPLFG--DMHDFEILIEEAHSRGKPKRT---FREVTKSFA 128 (136)
Q Consensus 89 d~~~vd~~~G--t~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~ 128 (136)
||+++||+|| +.+|||+||++||++||+||| +||++.++.
T Consensus 233 ~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~ 277 (1221)
T PRK14510 233 AFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNH 277 (1221)
T ss_pred CCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCC
Confidence 9999999999 999999999999999999999 999987643
No 25
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=99.88 E-value=2.9e-22 Score=173.28 Aligned_cols=97 Identities=20% Similarity=0.283 Sum_probs=87.3
Q ss_pred CCceEEEEecccccCcCCCCCCCHHHHHH-hHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHH
Q psy12953 29 QTAIMYQIYPRSFRDVNGDGTGDMRGITE-KLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEIL 106 (136)
Q Consensus 29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~-~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~l 106 (136)
.+.+|||+|++.|+. ....|+++++.+ .|+||++||||+|+|+||++.+. .+|||++.||++++++||++++|++|
T Consensus 228 ~~~~IYE~Hvg~~~~--~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~L 305 (758)
T PLN02447 228 AALRIYEAHVGMSSE--EPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYL 305 (758)
T ss_pred CCCEEEEEeCCcccC--CCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHH
Confidence 567999999998853 335689999854 69999999999999999999876 67999999999999999999999999
Q ss_pred HHHHHHCCCcEEE---eccCCCcc
Q psy12953 107 IEEAHSRGKPKRT---FREVTKSF 127 (136)
Q Consensus 107 v~~ah~~Gi~vil---~nh~~~~~ 127 (136)
|++||++||+||| +||++.++
T Consensus 306 Vd~aH~~GI~VilDvV~nH~~~~~ 329 (758)
T PLN02447 306 IDKAHSLGLRVLMDVVHSHASKNT 329 (758)
T ss_pred HHHHHHCCCEEEEEeccccccccc
Confidence 9999999999999 99998754
No 26
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=99.88 E-value=2.2e-22 Score=167.48 Aligned_cols=93 Identities=18% Similarity=0.375 Sum_probs=80.2
Q ss_pred CceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC--CCCCCCccCCC---------CCCCCCC
Q psy12953 30 TAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG--ADLGYDVSNYV---------DVDPLFG 98 (136)
Q Consensus 30 ~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~--~~~gY~~~d~~---------~vd~~~G 98 (136)
..+|.|.+-.... .++.+|++++++|+||++||||+|||+||+++.+ .++||++.||+ .|||+||
T Consensus 3 ~~~~~q~f~w~~~----~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fG 78 (479)
T PRK09441 3 NGTMMQYFEWYLP----NDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYG 78 (479)
T ss_pred CceEEEEEEeccC----CCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcC
Confidence 4567776544432 2336788999999999999999999999999874 46999999999 7999999
Q ss_pred CHHHHHHHHHHHHHCCCcEEE---eccCCCc
Q psy12953 99 DMHDFEILIEEAHSRGKPKRT---FREVTKS 126 (136)
Q Consensus 99 t~~~~~~lv~~ah~~Gi~vil---~nh~~~~ 126 (136)
|.+||++||++||++||+||+ +||++.+
T Consensus 79 t~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~ 109 (479)
T PRK09441 79 TKEELLNAIDALHENGIKVYADVVLNHKAGA 109 (479)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcccccCC
Confidence 999999999999999999999 9999853
No 27
>PLN02877 alpha-amylase/limit dextrinase
Probab=99.86 E-value=2.6e-21 Score=170.34 Aligned_cols=105 Identities=16% Similarity=0.300 Sum_probs=88.2
Q ss_pred cccCCceEEEEecccccCcCC----CCCCCHHHHHHh-------HHHHHHcCCcEEEEcCCccCC---------------
Q psy12953 26 EWWQTAIMYQIYPRSFRDVNG----DGTGDMRGITEK-------LDHFVDLGIESLWIQPFYPAG--------------- 79 (136)
Q Consensus 26 ~w~~~~~iY~v~~~~f~~~~~----~~~g~~~~l~~~-------l~~l~~lG~~~I~l~Pi~~~~--------------- 79 (136)
.-+.+.+|||+|++.|+..+. ...|+|.+++++ |+||++||||+|+|+|+++.+
T Consensus 335 ~~~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~ 414 (970)
T PLN02877 335 LSFSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPK 414 (970)
T ss_pred CCCcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccc
Confidence 345789999999999986543 346999888776 667777799999999998852
Q ss_pred -----------------------CCCCCCCccCCCCCCCCCCC-------HHHHHHHHHHHHHCCCcEEE---eccCCCc
Q psy12953 80 -----------------------GADLGYDVSNYVDVDPLFGD-------MHDFEILIEEAHSRGKPKRT---FREVTKS 126 (136)
Q Consensus 80 -----------------------~~~~gY~~~d~~~vd~~~Gt-------~~~~~~lv~~ah~~Gi~vil---~nh~~~~ 126 (136)
.++|||++.+|++++.+|++ ..|||+||++||++||+||| +||+..+
T Consensus 415 ~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~ 494 (970)
T PLN02877 415 ELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSS 494 (970)
T ss_pred hhccccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCC
Confidence 16799999999999999998 35899999999999999999 9999876
Q ss_pred cCCC
Q psy12953 127 FANN 130 (136)
Q Consensus 127 ~~~~ 130 (136)
++..
T Consensus 495 g~~~ 498 (970)
T PLN02877 495 GPFD 498 (970)
T ss_pred CCcc
Confidence 6543
No 28
>PLN02361 alpha-amylase
Probab=99.85 E-value=6.6e-21 Score=155.71 Aligned_cols=94 Identities=15% Similarity=0.231 Sum_probs=80.8
Q ss_pred CCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHH
Q psy12953 29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIE 108 (136)
Q Consensus 29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~ 108 (136)
.+.+|+|-+-..-.+ ...|++++++|+||++||||+|||+|++++.+ ++||++.||+++||+|||.+||++||+
T Consensus 10 ~~~v~lQ~F~W~~~~-----~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~-~~GY~~~d~y~~~~~~Gt~~el~~li~ 83 (401)
T PLN02361 10 GREILLQAFNWESHK-----HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLA-PEGYLPQNLYSLNSAYGSEHLLKSLLR 83 (401)
T ss_pred CCcEEEEEEeccCCc-----cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCC-CCCCCcccccccCcccCCHHHHHHHHH
Confidence 367788865443221 25789999999999999999999999999865 599999999999999999999999999
Q ss_pred HHHHCCCcEEE---eccCCCccC
Q psy12953 109 EAHSRGKPKRT---FREVTKSFA 128 (136)
Q Consensus 109 ~ah~~Gi~vil---~nh~~~~~~ 128 (136)
+||++||+||+ +||++-...
T Consensus 84 ~~h~~gi~vi~D~V~NH~~g~~~ 106 (401)
T PLN02361 84 KMKQYNVRAMADIVINHRVGTTQ 106 (401)
T ss_pred HHHHcCCEEEEEEccccccCCCC
Confidence 99999999999 999864433
No 29
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=99.84 E-value=6.1e-21 Score=167.63 Aligned_cols=106 Identities=17% Similarity=0.346 Sum_probs=89.5
Q ss_pred cccCCceEEEEecccccCcCC----CCCCCHHHHHHh-------HHHHHHcCCcEEEEcCCccCC---------------
Q psy12953 26 EWWQTAIMYQIYPRSFRDVNG----DGTGDMRGITEK-------LDHFVDLGIESLWIQPFYPAG--------------- 79 (136)
Q Consensus 26 ~w~~~~~iY~v~~~~f~~~~~----~~~g~~~~l~~~-------l~~l~~lG~~~I~l~Pi~~~~--------------- 79 (136)
..+++.+|||+|++.|+..+. ...|+|.+++++ |++|++||||+|+|||+++..
T Consensus 248 ~~~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~ 327 (898)
T TIGR02103 248 ASFADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQP 327 (898)
T ss_pred CCCcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccc
Confidence 357889999999999985432 347999999875 666678899999999998752
Q ss_pred ------------------------------------------------CCCCCCCccCCCCCCCCCCCH-------HHHH
Q psy12953 80 ------------------------------------------------GADLGYDVSNYVDVDPLFGDM-------HDFE 104 (136)
Q Consensus 80 ------------------------------------------------~~~~gY~~~d~~~vd~~~Gt~-------~~~~ 104 (136)
.+.|||++.+|+.++.+|++. .|||
T Consensus 328 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk 407 (898)
T TIGR02103 328 FSKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFR 407 (898)
T ss_pred hhhhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHH
Confidence 136999999999999999983 6999
Q ss_pred HHHHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953 105 ILIEEAHSRGKPKRT---FREVTKSFANNQ 131 (136)
Q Consensus 105 ~lv~~ah~~Gi~vil---~nh~~~~~~~~~ 131 (136)
+||++||++||+||| +||++.+++...
T Consensus 408 ~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~ 437 (898)
T TIGR02103 408 EMVQALNKTGLNVVMDVVYNHTNASGPNDR 437 (898)
T ss_pred HHHHHHHHCCCEEEEEeecccccccCccCc
Confidence 999999999999999 999998776544
No 30
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=99.84 E-value=3.5e-21 Score=165.35 Aligned_cols=102 Identities=20% Similarity=0.458 Sum_probs=88.8
Q ss_pred CccccCCceEEEEecccccCcC----CCCCCCHHHHHHh--HHHHHHcCCcEEEEcCCccCC----------CCCCCCCc
Q psy12953 24 QKEWWQTAIMYQIYPRSFRDVN----GDGTGDMRGITEK--LDHFVDLGIESLWIQPFYPAG----------GADLGYDV 87 (136)
Q Consensus 24 ~~~w~~~~~iY~v~~~~f~~~~----~~~~g~~~~l~~~--l~~l~~lG~~~I~l~Pi~~~~----------~~~~gY~~ 87 (136)
+.-.|++++|||+|++.|+..+ +...|+|.++.+. |+|||+||||+|.|+||+... .++|||+|
T Consensus 165 ~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP 244 (697)
T COG1523 165 PRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDP 244 (697)
T ss_pred CCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCc
Confidence 3335899999999999998432 3447999999999 999999999999999998752 26799999
Q ss_pred cCCCCCCCCCCC-------HHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953 88 SNYVDVDPLFGD-------MHDFEILIEEAHSRGKPKRT---FREVTK 125 (136)
Q Consensus 88 ~d~~~vd~~~Gt-------~~~~~~lv~~ah~~Gi~vil---~nh~~~ 125 (136)
.+|++++++|.+ ..|||.||+++|++||+||| |||+..
T Consensus 245 ~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae 292 (697)
T COG1523 245 LNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAE 292 (697)
T ss_pred ccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCccc
Confidence 999999999965 35999999999999999999 999964
No 31
>PLN02784 alpha-amylase
Probab=99.82 E-value=4.9e-20 Score=160.13 Aligned_cols=101 Identities=17% Similarity=0.282 Sum_probs=86.4
Q ss_pred CceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHH
Q psy12953 30 TAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEE 109 (136)
Q Consensus 30 ~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ 109 (136)
....|++....|.......+..+++++++++||++||||+|||+|++++.. ++||++.||+++|++|||.+||++||++
T Consensus 498 ~~~~~eVmlQgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s-~~GY~p~D~y~lds~yGT~~ELk~LI~a 576 (894)
T PLN02784 498 TGSGFEILCQGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVS-PEGYMPKDLYNLNSRYGTIDELKDLVKS 576 (894)
T ss_pred ccCCceEEEEeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCC-CCCcCcccccccCcCcCCHHHHHHHHHH
Confidence 456778888888733222246689999999999999999999999998774 5899999999999999999999999999
Q ss_pred HHHCCCcEEE---eccCCCccCCCC
Q psy12953 110 AHSRGKPKRT---FREVTKSFANNQ 131 (136)
Q Consensus 110 ah~~Gi~vil---~nh~~~~~~~~~ 131 (136)
||++||+||+ +||++..+.+.+
T Consensus 577 ~H~~GIkVIlDiViNH~ag~f~~~~ 601 (894)
T PLN02784 577 FHEVGIKVLGDAVLNHRCAHFQNQN 601 (894)
T ss_pred HHHCCCEEEEEECcccccccccCCC
Confidence 9999999999 999986654443
No 32
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.81 E-value=8.7e-20 Score=158.84 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=74.2
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCC-CCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCC
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAG-GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVT 124 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~-~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~ 124 (136)
+++|++++++|+||++|||++||++||+++. ..++||++.||+.|||++|+.++|++|+++||++||+||+ +||++
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 3899999999999999999999999999974 4679999999999999999999999999999999999999 99999
Q ss_pred Cc
Q psy12953 125 KS 126 (136)
Q Consensus 125 ~~ 126 (136)
.+
T Consensus 92 ~~ 93 (825)
T TIGR02401 92 VH 93 (825)
T ss_pred cc
Confidence 87
No 33
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.81 E-value=8.9e-20 Score=159.44 Aligned_cols=79 Identities=22% Similarity=0.350 Sum_probs=75.2
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCC-CCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAG-GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTK 125 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~-~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~ 125 (136)
.+|++++++++||++|||++|||+||+++. ..++||++.||+.|||++|+.++|++||++||++||+||+ +||++.
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~~ 96 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMAV 96 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccC
Confidence 689999999999999999999999999984 4689999999999999999999999999999999999999 999998
Q ss_pred ccC
Q psy12953 126 SFA 128 (136)
Q Consensus 126 ~~~ 128 (136)
+++
T Consensus 97 ~~~ 99 (879)
T PRK14511 97 GGP 99 (879)
T ss_pred cCc
Confidence 774
No 34
>PRK13840 sucrose phosphorylase; Provisional
Probab=99.81 E-value=6.8e-20 Score=152.77 Aligned_cols=91 Identities=26% Similarity=0.471 Sum_probs=81.8
Q ss_pred CCceEEEEecccccCcCCCCCCCHHHHHHhHH-HHHHcCCcEEEEcCCc-cCCCCCCCCCccCCCCCCCCCCCHHHHHHH
Q psy12953 29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLD-HFVDLGIESLWIQPFY-PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106 (136)
Q Consensus 29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~-~l~~lG~~~I~l~Pi~-~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~l 106 (136)
++.++...+.+++.+ |+++|+.++|+ ||+++ |++|||+|+| +++..+.||++.||++|||+|||++||++|
T Consensus 2 ~n~~~litY~Ds~~~------GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L 74 (495)
T PRK13840 2 KNKVQLITYADRLGD------GGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKAL 74 (495)
T ss_pred CCceEEEEeccCCCC------CCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHH
Confidence 466788888888752 79999999999 59999 9999999999 456778999999999999999999999999
Q ss_pred HHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953 107 IEEAHSRGKPKRT---FREVTKSFANNQ 131 (136)
Q Consensus 107 v~~ah~~Gi~vil---~nh~~~~~~~~~ 131 (136)
++ ||+||+ +||+|..|++++
T Consensus 75 ~~-----giklmlDlV~NHtS~~h~WFq 97 (495)
T PRK13840 75 GK-----THDIMADLIVNHMSAESPQFQ 97 (495)
T ss_pred Hh-----CCeEEEEECCCcCCCCcHHHH
Confidence 84 999999 999999999854
No 35
>KOG0470|consensus
Probab=99.78 E-value=2.5e-19 Score=152.52 Aligned_cols=96 Identities=28% Similarity=0.501 Sum_probs=85.1
Q ss_pred CceEEEEecccccCcCCCC--CCCHHHHHHh-HHHHHHcCCcEEEEcCCccCC-C-CCCCCCccCCCCCCCCCCCHH---
Q psy12953 30 TAIMYQIYPRSFRDVNGDG--TGDMRGITEK-LDHFVDLGIESLWIQPFYPAG-G-ADLGYDVSNYVDVDPLFGDMH--- 101 (136)
Q Consensus 30 ~~~iY~v~~~~f~~~~~~~--~g~~~~l~~~-l~~l~~lG~~~I~l~Pi~~~~-~-~~~gY~~~d~~~vd~~~Gt~~--- 101 (136)
+..|||+|++.|+...+.. .|.+.+++++ |+|||+||+|+|.|+||++.. . ..|||.+++|++...+|||++
T Consensus 229 sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ 308 (757)
T KOG0470|consen 229 SLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPC 308 (757)
T ss_pred heEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCccc
Confidence 7899999999998544321 2229999999 999999999999999999994 3 589999999999999999999
Q ss_pred ---HHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953 102 ---DFEILIEEAHSRGKPKRT---FREVTK 125 (136)
Q Consensus 102 ---~~~~lv~~ah~~Gi~vil---~nh~~~ 125 (136)
|||+||++||..||.|+| .||++.
T Consensus 309 ri~efK~lVd~aHs~GI~VlLDVV~sHaa~ 338 (757)
T KOG0470|consen 309 RINEFKELVDKAHSLGIEVLLDVVHSHAAK 338 (757)
T ss_pred chHHHHHHHHHHhhCCcEEehhhhhhhccc
Confidence 999999999999999999 667665
No 36
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.78 E-value=1.2e-18 Score=159.90 Aligned_cols=88 Identities=18% Similarity=0.288 Sum_probs=79.8
Q ss_pred ceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccC-CCCCCCCCccCCCCCCCCCCCHHHHHHHHHH
Q psy12953 31 AIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVDVDPLFGDMHDFEILIEE 109 (136)
Q Consensus 31 ~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~-~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ 109 (136)
..+|.+....= ++|++++++++||++|||++||++||+++ +..++||++.||+.|||+||+.++|++|+++
T Consensus 744 ~atyrlq~~~~--------~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ 815 (1693)
T PRK14507 744 RATYRLQFHKD--------FTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAA 815 (1693)
T ss_pred ceeEEEEeCCC--------CCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHH
Confidence 44777765542 79999999999999999999999999996 4578999999999999999999999999999
Q ss_pred HHHCCCcEEE---eccCCCc
Q psy12953 110 AHSRGKPKRT---FREVTKS 126 (136)
Q Consensus 110 ah~~Gi~vil---~nh~~~~ 126 (136)
||++||+||+ +||++.+
T Consensus 816 ah~~Gi~vilDiV~NH~~~~ 835 (1693)
T PRK14507 816 LKAHGLGQLLDIVPNHMGVG 835 (1693)
T ss_pred HHHCCCEEEEEecccccCCC
Confidence 9999999999 9999853
No 37
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=99.77 E-value=1.8e-19 Score=149.51 Aligned_cols=87 Identities=26% Similarity=0.494 Sum_probs=78.5
Q ss_pred EecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q psy12953 36 IYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGK 115 (136)
Q Consensus 36 v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi 115 (136)
+.+.+|.|+++++.|+++++.++ ||++ ||++|||+|+|++++ ++||++.||+.|||+|||++||++|+++ |
T Consensus 3 v~lity~Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPffps~s-D~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~ 73 (470)
T TIGR03852 3 AMLITYADSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTG-DRGFAPMDYTEVDPAFGDWSDVEALSEK-----Y 73 (470)
T ss_pred ceEEEecCCCCCChhhHHHHHHH--HHHH-hCCEEEECCCCcCCC-CCCcCchhhceeCcccCCHHHHHHHHHh-----h
Confidence 44567777778888999999888 9999 799999999999986 8999999999999999999999999987 7
Q ss_pred cEEE---eccCCCccCCCC
Q psy12953 116 PKRT---FREVTKSFANNQ 131 (136)
Q Consensus 116 ~vil---~nh~~~~~~~~~ 131 (136)
+||+ +||+|.+|++++
T Consensus 74 kvmlDlV~NHtS~~h~WFq 92 (470)
T TIGR03852 74 YLMFDFMINHISRQSEYYQ 92 (470)
T ss_pred hHHhhhcccccccchHHHH
Confidence 9998 999999998764
No 38
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.74 E-value=5.2e-18 Score=143.94 Aligned_cols=98 Identities=15% Similarity=0.263 Sum_probs=83.5
Q ss_pred CCceEEEEecccccCcCCCCCCCHHHH---HHhHHHHHHcCCcEEEEcCCccC---------CCCCCCCCccCCCCCCCC
Q psy12953 29 QTAIMYQIYPRSFRDVNGDGTGDMRGI---TEKLDHFVDLGIESLWIQPFYPA---------GGADLGYDVSNYVDVDPL 96 (136)
Q Consensus 29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l---~~~l~~l~~lG~~~I~l~Pi~~~---------~~~~~gY~~~d~~~vd~~ 96 (136)
...+++.++|.++-...+ ..+-+. ....+||++|||++|||+|++++ +..+.||++.|| .|||+
T Consensus 50 ~a~~W~~~~P~s~i~~~~---~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~-~Idp~ 125 (688)
T TIGR02455 50 IASVWFTAYPAAIIAPEG---CSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISF-DIDPL 125 (688)
T ss_pred hcCeeEEecchhhcCCCC---CcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccC-ccCcc
Confidence 446889999999863332 233222 34478999999999999999999 888999999995 99999
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953 97 FGDMHDFEILIEEAHSRGKPKRT---FREVTKSFANNQ 131 (136)
Q Consensus 97 ~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~~ 131 (136)
|||.+||++|+++||++||+||+ +||++..|+ ++
T Consensus 126 ~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghd-F~ 162 (688)
T TIGR02455 126 LGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGAD-FR 162 (688)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcc-hH
Confidence 99999999999999999999999 999999998 44
No 39
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=6.8e-16 Score=132.01 Aligned_cols=80 Identities=26% Similarity=0.425 Sum_probs=74.7
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTK 125 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~ 125 (136)
=+|.+..+.|+||++|||.++|++||+.... +.|||+|+|+..|||++|+.+.|.+|++++|++||.+|+ +|||+.
T Consensus 16 FtF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav 95 (889)
T COG3280 16 FTFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAV 95 (889)
T ss_pred CCHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhc
Confidence 4799999999999999999999999999854 779999999999999999999999999999999999999 999998
Q ss_pred c-cCC
Q psy12953 126 S-FAN 129 (136)
Q Consensus 126 ~-~~~ 129 (136)
+ +.+
T Consensus 96 ~g~~N 100 (889)
T COG3280 96 GGHEN 100 (889)
T ss_pred ccccC
Confidence 7 443
No 40
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.60 E-value=3e-15 Score=135.29 Aligned_cols=83 Identities=17% Similarity=0.278 Sum_probs=77.7
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC----CHHHHHHHHHHHHHC-CCcEEE---e
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG----DMHDFEILIEEAHSR-GKPKRT---F 120 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G----t~~~~~~lv~~ah~~-Gi~vil---~ 120 (136)
.|+|+++.++|++++++|+|.|||+||++.+..++.|++.||..+||.+| +.++|++||+++|++ ||++|+ +
T Consensus 128 mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~ 207 (1464)
T TIGR01531 128 LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVF 207 (1464)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 59999999999999999999999999998887789999999999999994 889999999999997 999999 9
Q ss_pred ccCCCccCCCC
Q psy12953 121 REVTKSFANNQ 131 (136)
Q Consensus 121 nh~~~~~~~~~ 131 (136)
||++.++++.+
T Consensus 208 NHTa~ds~Wl~ 218 (1464)
T TIGR01531 208 NHTANNSPWLL 218 (1464)
T ss_pred cccccCCHHHH
Confidence 99999887654
No 41
>PLN03244 alpha-amylase; Provisional
Probab=99.07 E-value=4.7e-10 Score=97.73 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=59.8
Q ss_pred CCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHH
Q psy12953 29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIE 108 (136)
Q Consensus 29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~ 108 (136)
....|||.|+.-.+ .+...|+++++.++ +++|++++++|||++||++||+
T Consensus 399 ~~lrIYE~HvGms~--~e~kv~ty~eF~~~----------------------------vt~fFApssRYGTPeDLK~LVD 448 (872)
T PLN03244 399 ESLRIYECHVGISG--SEPKISSFEEFTEK----------------------------VTNFFAASSRYGTPDDFKRLVD 448 (872)
T ss_pred CCceEEEEEeeecC--CCCCcccHHHHhhc----------------------------cCcccccCcccCCHHHHHHHHH
Confidence 55679999997754 44557899999885 6799999999999999999999
Q ss_pred HHHHCCCcEEE---eccCCCcc
Q psy12953 109 EAHSRGKPKRT---FREVTKSF 127 (136)
Q Consensus 109 ~ah~~Gi~vil---~nh~~~~~ 127 (136)
+||++||+||| +||.+.+.
T Consensus 449 ~aH~~GI~VILDvV~NH~~~d~ 470 (872)
T PLN03244 449 EAHGLGLLVFLDIVHSYAAADE 470 (872)
T ss_pred HHHHCCCEEEEEecCccCCCcc
Confidence 99999999999 88888764
No 42
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=99.00 E-value=1.8e-09 Score=88.81 Aligned_cols=90 Identities=16% Similarity=0.293 Sum_probs=76.8
Q ss_pred CceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCC------HHHH
Q psy12953 30 TAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGD------MHDF 103 (136)
Q Consensus 30 ~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt------~~~~ 103 (136)
...|..+..... |++.++.++|+.++++|+|.|++.|+.+.+.+++.|.+.|...+||.+.. .+++
T Consensus 7 ~i~iQTvlsk~~--------G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v 78 (423)
T PF14701_consen 7 SISIQTVLSKWM--------GPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDV 78 (423)
T ss_pred ceEEEEEhhhhc--------CCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHH
Confidence 345555555544 99999999999999999999999999999998899999999999999754 3699
Q ss_pred HHHHHHHH-HCCCcEEE---eccCCCcc
Q psy12953 104 EILIEEAH-SRGKPKRT---FREVTKSF 127 (136)
Q Consensus 104 ~~lv~~ah-~~Gi~vil---~nh~~~~~ 127 (136)
+++|++++ +.||..|. +||++.+.
T Consensus 79 ~~~v~~~~~~~~ll~~~DvV~NHtA~nS 106 (423)
T PF14701_consen 79 KEFVKEAEKKYGLLSMTDVVLNHTANNS 106 (423)
T ss_pred HHHHHHHHHHcCceEEEEEeeccCcCCC
Confidence 99999996 68999999 88887653
No 43
>KOG2212|consensus
Probab=98.00 E-value=3.8e-05 Score=62.19 Aligned_cols=90 Identities=10% Similarity=0.166 Sum_probs=70.9
Q ss_pred CccccCC-ceEEEEecccccCcCCCCCCCHHHHHHhHH-HHHHcCCcEEEEcCCccCCC-----CC--CCCCccCCCCCC
Q psy12953 24 QKEWWQT-AIMYQIYPRSFRDVNGDGTGDMRGITEKLD-HFVDLGIESLWIQPFYPAGG-----AD--LGYDVSNYVDVD 94 (136)
Q Consensus 24 ~~~w~~~-~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~-~l~~lG~~~I~l~Pi~~~~~-----~~--~gY~~~d~~~vd 94 (136)
.+.||+. ..|-.++...+ .++...++ .|.--|+..|..+|+.|.-. .. ..|+|..| .++
T Consensus 21 ~t~~~~~R~tmVHLFEWKW-----------~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvSY-KL~ 88 (504)
T KOG2212|consen 21 STNTQQGRTTIVHLFEWKW-----------VDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVSY-KLC 88 (504)
T ss_pred CchhhcCcceEEEEEEeeh-----------HHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccceE-Eee
Confidence 3455554 56666666554 57777765 56669999999999998632 11 26899988 699
Q ss_pred CCCCCHHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953 95 PLFGDMHDFEILIEEAHSRGKPKRT---FREVTK 125 (136)
Q Consensus 95 ~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~ 125 (136)
.|-|..+||+.||+.|.+-|.|+++ +||++-
T Consensus 89 tRSGNE~eF~dMV~RCN~VGVRiyVDvv~NHM~g 122 (504)
T KOG2212|consen 89 TRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMCG 122 (504)
T ss_pred ccCCCHHHHHHHHHHhhccceEEEehhhhhhhcc
Confidence 9999999999999999999999999 999974
No 44
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.96 E-value=1.2e-05 Score=56.70 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=46.4
Q ss_pred HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.+++++++|+++|.+.-=... .+-|-++.....+|.++ .+-|+++|++||++||+|++
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~---g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~a 62 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHG---GYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPA 62 (132)
T ss_pred HHHHHHHHHhCCCEEEEEccccc---EEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEE
Confidence 45678999999999998432111 23345566566788888 78899999999999999999
No 45
>KOG3625|consensus
Probab=97.88 E-value=2e-05 Score=70.13 Aligned_cols=79 Identities=15% Similarity=0.287 Sum_probs=70.6
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC------CHHHHHHHHHHHHHC-CCcEEE--
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG------DMHDFEILIEEAHSR-GKPKRT-- 119 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G------t~~~~~~lv~~ah~~-Gi~vil-- 119 (136)
.|.+++++.+|.-.++.|+|.|++.|+.+-+.+.+.|...|.-.+++.+. +.+|.++||+.+|+- ||-.+-
T Consensus 138 LGpl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~Dv 217 (1521)
T KOG3625|consen 138 LGPLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITDV 217 (1521)
T ss_pred cCChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeehh
Confidence 59999999999999999999999999999998889999999999999986 789999999999986 776665
Q ss_pred -eccCCCcc
Q psy12953 120 -FREVTKSF 127 (136)
Q Consensus 120 -~nh~~~~~ 127 (136)
+||++.+.
T Consensus 218 V~NHtAnns 226 (1521)
T KOG3625|consen 218 VYNHTANNS 226 (1521)
T ss_pred hhhccccCC
Confidence 88876543
No 46
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.70 E-value=9.6e-05 Score=64.10 Aligned_cols=68 Identities=24% Similarity=0.356 Sum_probs=48.1
Q ss_pred HHHHHHhHHHHHHcCCcEEEEcCCccCCCC--------CCCCCccCCCC----CCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 52 MRGITEKLDHFVDLGIESLWIQPFYPAGGA--------DLGYDVSNYVD----VDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~--------~~gY~~~d~~~----vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
-.-+.+..+-++++|||..++.|-+.+... ..||+-+|=+. -...||+.+||+..++++|+.||+||.
T Consensus 586 N~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKYGs~~dL~~AikALH~~Giqvia 665 (809)
T PF02324_consen 586 NVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKYGSVEDLRNAIKALHAAGIQVIA 665 (809)
T ss_dssp HHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTTB-HHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCCCCHHHHHHHHHHHHHcCcchhh
Confidence 456677789999999999999998887542 36999988655 467899999999999999999999999
No 47
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.13 E-value=0.0012 Score=52.65 Aligned_cols=69 Identities=20% Similarity=0.197 Sum_probs=43.2
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCC--CHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFG--DMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~G--t~~~~~~lv~~ah~~Gi~vil 119 (136)
+-+.+.+.++.|+++|+|+|++.=-..... +.+-+.+..-+......+ +.+-|+.+|++||++||+|..
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHA 88 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHA 88 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEE
Confidence 456788889999999999999843221110 111111211111111111 357899999999999999998
No 48
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=97.12 E-value=0.0021 Score=55.75 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=73.4
Q ss_pred ccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHH---------------cCCcEEEEcCCccCC------------
Q psy12953 27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVD---------------LGIESLWIQPFYPAG------------ 79 (136)
Q Consensus 27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~---------------lG~~~I~l~Pi~~~~------------ 79 (136)
--....|.|+|+..-+.+ |++.|+.+...+|++ .|+++|.|+||-+.-
T Consensus 175 v~~P~nILQiHv~TAsp~-----GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~F 249 (811)
T PF14872_consen 175 VPAPRNILQIHVGTASPE-----GTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEF 249 (811)
T ss_pred cCCCceeEEEecCCCCCC-----cchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCce
Confidence 344568999999887544 899999887666653 699999999996631
Q ss_pred --------------------------------CCCCCCCcc--CCCCCCCCC-CC--HHHHHHHHHHHHH---CCCcEEE
Q psy12953 80 --------------------------------GADLGYDVS--NYVDVDPLF-GD--MHDFEILIEEAHS---RGKPKRT 119 (136)
Q Consensus 80 --------------------------------~~~~gY~~~--d~~~vd~~~-Gt--~~~~~~lv~~ah~---~Gi~vil 119 (136)
..+|||++. ...++||.+ +| ++|+-+||+.+|. ..|+||+
T Consensus 250 f~~~~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIy 329 (811)
T PF14872_consen 250 FSIRPEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIY 329 (811)
T ss_pred eeecccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEE
Confidence 014788754 345566663 33 7999999999998 4799999
Q ss_pred eccCCCccCCCCC
Q psy12953 120 FREVTKSFANNQG 132 (136)
Q Consensus 120 ~nh~~~~~~~~~~ 132 (136)
.+...|.++++
T Consensus 330 --DlVyGHADNQ~ 340 (811)
T PF14872_consen 330 --DLVYGHADNQA 340 (811)
T ss_pred --eeecccccchh
Confidence 77777777764
No 49
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=97.11 E-value=0.003 Score=46.16 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=47.0
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-+.+.+.+.+++++|+++|.+.= ....+.-+.+.++..-.-..+..+-+..+.++|.+.||+|++
T Consensus 18 ~~~~W~~~~~~m~~~GidtlIlq~---~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~ 83 (166)
T PF14488_consen 18 TPAQWREEFRAMKAIGIDTLILQW---TGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFV 83 (166)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEE---eecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEE
Confidence 346888899999999999999872 111122233444422222236678899999999999999999
No 50
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.0075 Score=50.08 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCC--CCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 46 GDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNY--VDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 46 ~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~--~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.....+=.++.+.++.|+.||||+|+..=.-.... +.+-+.+..= .-+-..-++.|-|..+|++||++||+|+.
T Consensus 57 ~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~a 133 (418)
T COG1649 57 SRVLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHA 133 (418)
T ss_pred CcccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeee
Confidence 33446678889999999999999999843322211 0000011000 00001123346799999999999999999
No 51
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=96.32 E-value=0.0097 Score=45.36 Aligned_cols=63 Identities=16% Similarity=0.186 Sum_probs=42.7
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT 124 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~ 124 (136)
...+.++.++++|+++|-|.-.++... ...++ .+++ ...+.|+++|++|+++||+||++-|..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~------~~~~--~~~~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY------NYDE--TYLARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT------SBTH--HHHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc------cccH--HHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 566778999999999999966542211 11111 0111 225789999999999999999966654
No 52
>PLN03059 beta-galactosidase; Provisional
Probab=96.05 E-value=0.032 Score=50.00 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=44.2
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
-.-.-+.++|..+|++|+|+|..==++..-+...| ..|| .+..||.++++.|++.||.||+
T Consensus 56 ~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G--~~dF-------~G~~DL~~Fl~la~e~GLyvil 116 (840)
T PLN03059 56 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPG--NYYF-------EDRYDLVKFIKVVQAAGLYVHL 116 (840)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCC--eeec-------cchHHHHHHHHHHHHcCCEEEe
Confidence 34567888899999999999986333222111122 3333 4578999999999999999999
No 53
>PRK09936 hypothetical protein; Provisional
Probab=96.04 E-value=0.086 Score=41.88 Aligned_cols=70 Identities=19% Similarity=0.113 Sum_probs=50.0
Q ss_pred cCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCH-HHHHHH
Q psy12953 28 WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDM-HDFEIL 106 (136)
Q Consensus 28 ~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~-~~~~~l 106 (136)
-.+.++||-.-+.-. =+-..+.+.+..++++|+++|.+.=. +|. |+.||+. .-|.+.
T Consensus 20 a~~g~F~Qp~n~d~~-------~~~~qWq~~~~~~~~~G~~tLivQWt--------~yG-------~~~fg~~~g~La~~ 77 (296)
T PRK09936 20 AMKGIFYQPQNRDSQ-------VTDTQWQGLWSQLRLQGFDTLVVQWT--------RYG-------DADFGGQRGWLAKR 77 (296)
T ss_pred ccccceeccccccCC-------CCHHHHHHHHHHHHHcCCcEEEEEee--------ecc-------CCCcccchHHHHHH
Confidence 356778886554322 34567788888999999999988521 221 2255554 469999
Q ss_pred HHHHHHCCCcEEE
Q psy12953 107 IEEAHSRGKPKRT 119 (136)
Q Consensus 107 v~~ah~~Gi~vil 119 (136)
+++|++.||+|.+
T Consensus 78 l~~A~~~Gl~v~v 90 (296)
T PRK09936 78 LAAAQQAGLKLVV 90 (296)
T ss_pred HHHHHHcCCEEEE
Confidence 9999999999999
No 54
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=95.84 E-value=0.027 Score=47.85 Aligned_cols=57 Identities=28% Similarity=0.418 Sum_probs=49.5
Q ss_pred CCCCCHH-HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHH
Q psy12953 47 DGTGDMR-GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDF 103 (136)
Q Consensus 47 ~~~g~~~-~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~ 103 (136)
-|.|||- ++.+.++.+++.|++.+.++|+.+....+++|.+.+=+..||-|=+.+.+
T Consensus 20 ~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~alnplyI~l~~l 77 (497)
T PRK14508 20 YGIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAGNPLLIDLEAL 77 (497)
T ss_pred CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccChhhcChhhc
Confidence 4579995 99999999999999999999999988777899999988988888765433
No 55
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=95.79 E-value=0.013 Score=47.02 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=38.3
Q ss_pred HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
-+.+.++|..+|++|+|+|..-=.+..-+...| ..||. ...++.++++.|+++||.|++
T Consensus 23 ~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g--~~df~-------g~~dl~~f~~~a~~~gl~vil 81 (319)
T PF01301_consen 23 PEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEG--QFDFT-------GNRDLDRFLDLAQENGLYVIL 81 (319)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTT--B---S-------GGG-HHHHHHHHHHTT-EEEE
T ss_pred hhHHHHHHHHHHhCCcceEEEeccccccCCCCC--ccccc-------chhhHHHHHHHHHHcCcEEEe
Confidence 456778899999999999998544332221122 45552 247899999999999999999
No 56
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=95.53 E-value=0.054 Score=43.83 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=40.5
Q ss_pred HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccCCCC
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFANNQ 131 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~~~~ 131 (136)
.+.++-||+.|+|.|-|--.. .|.. .-+-+.++..++.++|++.||+|+++-|.|-...++.
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv-~P~~-------------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWV-NPYD-------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-S-S-TT-------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTT
T ss_pred CCHHHHHHhcCCCeEEEEecc-CCcc-------------cccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCC
Confidence 456779999999999986533 2211 3345678999999999999999999888776665544
No 57
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=95.36 E-value=0.041 Score=51.40 Aligned_cols=60 Identities=22% Similarity=0.291 Sum_probs=51.5
Q ss_pred CCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCC----CCCCccCCCCCCCCCCCHHHHH
Q psy12953 45 NGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD----LGYDVSNYVDVDPLFGDMHDFE 104 (136)
Q Consensus 45 ~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~----~gY~~~d~~~vd~~~Gt~~~~~ 104 (136)
.+-|.|||.++.+.++.+++.|.+.+.|+|+.+....+ ++|.+.+=+..||-|=+++.+.
T Consensus 738 ~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~~~~~p~~~SPYsp~S~~alNplyI~~~~l~ 801 (1221)
T PRK14510 738 RPWGIGDFEELYALVDFLAEGGQSLWGVNPLHPLGLGDPERASPYQPSSRRAGNPLLISLDLLP 801 (1221)
T ss_pred CCCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCccchhccccChhhcCHhhcc
Confidence 34567999999999999999999999999999876555 8999999889999988876543
No 58
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=95.21 E-value=0.093 Score=41.37 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=45.0
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT 124 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~ 124 (136)
+.+.+..++-+|..+++|+..+.+--=+.... .=...|+....+. .++++||+-|+++|++|+| .|+-.
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~---~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw~~~~~ 97 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWE---KDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLWYHSET 97 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS-----TTT--TT-B-TT------HHHHHHHHHHTT-EEEEEEECCH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecccccccc---ccccccccccCCc----cCHHHHHHHHHHcCCCEEEEEeCCc
Confidence 47889999999999999999999932222110 0124555555555 6899999999999999999 55543
No 59
>PLN02950 4-alpha-glucanotransferase
Probab=95.16 E-value=0.082 Score=48.03 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=50.1
Q ss_pred CCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-----CCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953 48 GTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-----ADLGYDVSNYVDVDPLFGDMHDFEI 105 (136)
Q Consensus 48 ~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-----~~~gY~~~d~~~vd~~~Gt~~~~~~ 105 (136)
|.|||.++.+.++.+++.|.+.+.|+|+.+... .+.+|.+.+=+..||-|=+++++.+
T Consensus 278 GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~~l~~ 340 (909)
T PLN02950 278 GVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALSE 340 (909)
T ss_pred CeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHHHHHh
Confidence 579999999999999999999999999988653 1348999999999999998877643
No 60
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=94.98 E-value=0.042 Score=46.62 Aligned_cols=61 Identities=21% Similarity=0.385 Sum_probs=38.1
Q ss_pred CCCCCCH-HHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHH
Q psy12953 46 GDGTGDM-RGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEIL 106 (136)
Q Consensus 46 ~~~~g~~-~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~l 106 (136)
+-|.||| .++.+.++.+++.|+..+.|.|+.+... .+++|.+.+=+.+||-|=+.+++.+.
T Consensus 11 ~~GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~l~~l~e~ 73 (496)
T PF02446_consen 11 SWGIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYIDLEALPEF 73 (496)
T ss_dssp --SS--SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-SHHHHHT
T ss_pred CCceecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcCHHHhhhc
Confidence 3478999 9999999999999999999999998865 44599999999999999887665443
No 61
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=94.88 E-value=0.17 Score=40.80 Aligned_cols=67 Identities=7% Similarity=0.092 Sum_probs=45.2
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC---------C---CCCCHHHHHHHHHHHHHCCCcE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD---------P---LFGDMHDFEILIEEAHSRGKPK 117 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd---------~---~~Gt~~~~~~lv~~ah~~Gi~v 117 (136)
-+.+.+++.|+.++..++|.+++--- ...+|......|-.+- . .+=|.+|+++||+-|+++||+|
T Consensus 15 ~~~~~lk~~id~ma~~KlN~lhlHLt---D~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~v 91 (329)
T cd06568 15 FTVAEVKRYIDLLALYKLNVLHLHLT---DDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITV 91 (329)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEEee---cCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 46788999999999999999888321 1011112222221111 1 1227899999999999999999
Q ss_pred EE
Q psy12953 118 RT 119 (136)
Q Consensus 118 il 119 (136)
|-
T Consensus 92 IP 93 (329)
T cd06568 92 VP 93 (329)
T ss_pred EE
Confidence 98
No 62
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=94.87 E-value=0.093 Score=46.65 Aligned_cols=77 Identities=17% Similarity=0.387 Sum_probs=58.0
Q ss_pred ccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-C---C-CCCCccCCCCCCCCCCCHH
Q psy12953 27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-A---D-LGYDVSNYVDVDPLFGDMH 101 (136)
Q Consensus 27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~---~-~gY~~~d~~~vd~~~Gt~~ 101 (136)
|-...++-+++ +.....+-|.|||.++.+.++.+++.|.+.+.|+|+.+... . + ++|.+.+=+..||-|=+++
T Consensus 59 ~R~aGill~l~--SLrS~~s~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle 136 (745)
T PLN03236 59 WKGSGMALPVF--SLRSAESVGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLK 136 (745)
T ss_pred hhhheeeeccc--cCCCCCCCCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHH
Confidence 44555555543 22223345679999999999999999999999999988752 2 3 5899999999999998877
Q ss_pred HHHH
Q psy12953 102 DFEI 105 (136)
Q Consensus 102 ~~~~ 105 (136)
.+.+
T Consensus 137 ~L~e 140 (745)
T PLN03236 137 ELVE 140 (745)
T ss_pred Hhhh
Confidence 6643
No 63
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=94.74 E-value=0.11 Score=45.96 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=53.7
Q ss_pred CCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccC----CCCCCCCCccCCCCCCCCCCCHHHHHHHH
Q psy12953 45 NGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA----GGADLGYDVSNYVDVDPLFGDMHDFEILI 107 (136)
Q Consensus 45 ~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~----~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv 107 (136)
.+-|.|||.++.+.++.+++.|.+.+.|.|+... +..+++|.+.+=+.+||-|=+++.+.++.
T Consensus 157 ~~~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~~ 223 (695)
T PRK11052 157 HNWGIGDFGDLKQMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFQ 223 (695)
T ss_pred CCCCeecHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhhh
Confidence 3556899999999999999999999999999963 34578899999999999999888776654
No 64
>PLN02635 disproportionating enzyme
Probab=94.68 E-value=0.099 Score=44.91 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=53.3
Q ss_pred EEEEecccccCcCCCCCCCHHHHH-HhHHHHHHcCCcEEEEcCCccCCC----CCCCCCccCCCCCCCCCCCHHHHH
Q psy12953 33 MYQIYPRSFRDVNGDGTGDMRGIT-EKLDHFVDLGIESLWIQPFYPAGG----ADLGYDVSNYVDVDPLFGDMHDFE 104 (136)
Q Consensus 33 iY~v~~~~f~~~~~~~~g~~~~l~-~~l~~l~~lG~~~I~l~Pi~~~~~----~~~gY~~~d~~~vd~~~Gt~~~~~ 104 (136)
---+++-+.. ..-|.|||-+.. +.++.+++.|.+.+.++|+.+... .+++|.+.+=+..||-|=+++++.
T Consensus 31 Gvll~l~SLp--s~~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S~fa~NPlyI~le~L~ 105 (538)
T PLN02635 31 GILLHPTSLP--GPYGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQDANCGNTLLISLEELV 105 (538)
T ss_pred EEEEccccCC--CCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcccccccccChhhcCHHhhh
Confidence 3334444444 235679998865 789999999999999999988743 678999999888888887766543
No 65
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=94.38 E-value=0.18 Score=40.78 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=47.4
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCC-------CCCCHHHHHHHHHHHHHCCCcEEE---
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDP-------LFGDMHDFEILIEEAHSRGKPKRT--- 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-------~~Gt~~~~~~lv~~ah~~Gi~vil--- 119 (136)
=+.+.+++.++.++..++|.+++- -....+|.+....|-.+-. .+=|.+|++++|+-|.++||.||-
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~H---ltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID 91 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWH---ITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEID 91 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEe---EEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEecc
Confidence 457888999999999999998872 0011112222222222111 112789999999999999999999
Q ss_pred -eccCC
Q psy12953 120 -FREVT 124 (136)
Q Consensus 120 -~nh~~ 124 (136)
+-|+.
T Consensus 92 ~PGH~~ 97 (348)
T cd06562 92 TPGHTG 97 (348)
T ss_pred CchhhH
Confidence 66653
No 66
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=94.36 E-value=0.13 Score=41.64 Aligned_cols=63 Identities=11% Similarity=-0.058 Sum_probs=41.9
Q ss_pred HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.++-+|++|+.-+.|..-+..+..-|.=..++|..++... ..+=+++|+++|+++||++.+
T Consensus 94 dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~-krDiv~El~~A~rk~Glk~G~ 156 (346)
T PF01120_consen 94 DQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGP-KRDIVGELADACRKYGLKFGL 156 (346)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGG-TS-HHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCC-CCCHHHHHHHHHHHcCCeEEE
Confidence 455678999999999998887765433333455666666333 357899999999999999999
No 67
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=94.28 E-value=0.26 Score=41.33 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=47.9
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEc-------C--CccCCC-----CCCCCCccCCCCCCCCCC-------------CHHH
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQ-------P--FYPAGG-----ADLGYDVSNYVDVDPLFG-------------DMHD 102 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~-------P--i~~~~~-----~~~gY~~~d~~~vd~~~G-------------t~~~ 102 (136)
-+...+++.|+.++..++|.+++- | +-..+. ...++...+...+.|.+| |.+|
T Consensus 19 ~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~d 98 (445)
T cd06569 19 HSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRAD 98 (445)
T ss_pred CCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHH
Confidence 467889999999999999988872 1 111111 111222222222222222 6899
Q ss_pred HHHHHHHHHHCCCcEEE----eccCC
Q psy12953 103 FEILIEEAHSRGKPKRT----FREVT 124 (136)
Q Consensus 103 ~~~lv~~ah~~Gi~vil----~nh~~ 124 (136)
++++|+-|+++||.||- +-|+.
T Consensus 99 i~eiv~yA~~rgI~VIPEID~PGH~~ 124 (445)
T cd06569 99 YIEILKYAKARHIEVIPEIDMPGHAR 124 (445)
T ss_pred HHHHHHHHHHcCCEEEEccCCchhHH
Confidence 99999999999999998 66644
No 68
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=93.72 E-value=0.29 Score=38.68 Aligned_cols=67 Identities=15% Similarity=0.254 Sum_probs=38.7
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCC----CCCCCCc--------cCCCCCCCCCCCHHHHHHHHHHHHHCCCcEE
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGG----ADLGYDV--------SNYVDVDPLFGDMHDFEILIEEAHSRGKPKR 118 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~----~~~gY~~--------~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vi 118 (136)
+..+...-|+..++.|||.|.+.=+.+... ..-|+.+ .||..+||.| .+.+.+.|+.|.++||.+.
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~~ 105 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEAA 105 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeEE
Confidence 345666669999999999999855444321 1112222 4666666555 5889999999999999997
Q ss_pred E
Q psy12953 119 T 119 (136)
Q Consensus 119 l 119 (136)
|
T Consensus 106 l 106 (289)
T PF13204_consen 106 L 106 (289)
T ss_dssp E
T ss_pred E
Confidence 7
No 69
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=93.66 E-value=0.31 Score=38.70 Aligned_cols=61 Identities=13% Similarity=0.057 Sum_probs=43.8
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEc--CCccCCCCCCCCCccCCCCCC--CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQ--PFYPAGGADLGYDVSNYVDVD--PLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~--Pi~~~~~~~~gY~~~d~~~vd--~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
-+.+.+++.++.++.+|+|.++|= --++.+ ++-.+. ...=|.+|++++++-|+++||.||-
T Consensus 14 ~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~---------~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIP 78 (301)
T cd06565 14 PKVSYLKKLLRLLALLGANGLLLYYEDTFPYE---------GEPEVGRMRGAYTKEEIREIDDYAAELGIEVIP 78 (301)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEecceecC---------CCcccccCCCCcCHHHHHHHHHHHHHcCCEEEe
Confidence 467889999999999999998872 111111 111111 1122689999999999999999998
No 70
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=93.44 E-value=0.32 Score=40.07 Aligned_cols=63 Identities=19% Similarity=0.058 Sum_probs=49.0
Q ss_pred HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.++-+|++|+.-+.|..=+..+..-|.=..++|..++... ..+=+++|+++|+++||++-+
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~ 146 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL 146 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE
Confidence 445678999999999998887665433333355777777655 568899999999999999999
No 71
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=92.83 E-value=1.1 Score=33.98 Aligned_cols=66 Identities=20% Similarity=0.299 Sum_probs=43.9
Q ss_pred HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCc--cCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDV--SNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~--~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
-..+.+..+.++++|+..+.|.|.+..+.. .|.- .+|.--+...=+.++++++.+.++++|+++.+
T Consensus 144 ~e~i~~ia~~l~~l~~~~~~llpyh~~g~~--Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 144 RENMQQALDVLIPLGIKQIHLLPFHQYGEP--KYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCccchh--HHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 345666667888889999999998876431 1111 11211222223578899999999999999865
No 72
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=92.57 E-value=0.6 Score=36.11 Aligned_cols=51 Identities=27% Similarity=0.190 Sum_probs=37.4
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccC
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFA 128 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~ 128 (136)
+-+++++++||++|.++-=+-.- +.++..++|+.++++|++|.- -++..++
T Consensus 75 ~Yl~~~k~lGf~~IEiS~G~~~i-------------------~~~~~~rlI~~~~~~g~~v~~--EvG~K~~ 125 (237)
T TIGR03849 75 EYLNECDELGFEAVEISDGSMEI-------------------SLEERCNLIERAKDNGFMVLS--EVGKKSP 125 (237)
T ss_pred HHHHHHHHcCCCEEEEcCCccCC-------------------CHHHHHHHHHHHHhCCCeEec--cccccCC
Confidence 34569999999999997532111 146888999999999999988 5554444
No 73
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=92.46 E-value=0.17 Score=41.01 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=36.7
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccC-CCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~-~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..+.+-++-++++|+|+|-|..+.=. -+...| ..|| +.|.++++.|+++||+|+|
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG--~ydF----------~~lD~~l~~a~~~Gi~viL 65 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEG--QYDF----------SWLDRVLDLAAKHGIKVIL 65 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTT--B-------------HHHHHHHHHHHCTT-EEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCCC--eeec----------HHHHHHHHHHHhccCeEEE
Confidence 46777899999999999999776311 010111 3333 5699999999999999999
No 74
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=92.27 E-value=0.17 Score=40.32 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=41.8
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC------C----CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD------P----LFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd------~----~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
-+.+.+++.|+.++..++|.+++--- +. .++.+....|-.+. + .+=|.+|++++|+.|+++||+||-
T Consensus 15 ~~~~~ik~~id~ma~~k~N~lhlhl~-D~--~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIP 91 (351)
T PF00728_consen 15 FSVDTIKRLIDQMAYYKLNVLHLHLS-DD--QGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIP 91 (351)
T ss_dssp B-HHHHHHHHHHHHHTT-SEEEEEEE-SS--TCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEe-cC--CCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceee
Confidence 56788999999999999999988221 00 01111111111111 0 033689999999999999999998
No 75
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=92.27 E-value=0.47 Score=37.58 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=44.6
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC-----------CCCCCHHHHHHHHHHHHHCCCcEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD-----------PLFGDMHDFEILIEEAHSRGKPKR 118 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd-----------~~~Gt~~~~~~lv~~ah~~Gi~vi 118 (136)
-+.+.+++.++.++..++|.+++-=- ...++.+....|-.+- ..+=|.+|++++++-|+++||+||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~---D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLT---DDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeee---cCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEE
Confidence 46788999999999999999877211 0001111222221111 112268999999999999999999
Q ss_pred E
Q psy12953 119 T 119 (136)
Q Consensus 119 l 119 (136)
-
T Consensus 90 P 90 (303)
T cd02742 90 P 90 (303)
T ss_pred E
Confidence 8
No 76
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=92.14 E-value=0.47 Score=37.45 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=43.6
Q ss_pred CCHHHHHHhHHHHHHcC--CcEEEEcCCccCCCCCCCCCccCCCCCC-CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLG--IESLWIQPFYPAGGADLGYDVSNYVDVD-PLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG--~~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+-+++.+.++.+++.| ++.++|-.=+... |.-.|| ..| .+|.+ .++|++++|++|+++++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~-----~~~~~f-~~d~~~FPd---~~~~i~~l~~~G~~~~~ 84 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKE-----FQWCDF-EFDPDRFPD---PEGMLSRLKEKGFKVCL 84 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccC-----Ccceee-EECcccCCC---HHHHHHHHHHCCCeEEE
Confidence 35578888899999999 7788887655321 111232 334 35653 68999999999999999
No 77
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=91.80 E-value=0.73 Score=36.49 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=41.9
Q ss_pred CCHHHHHHhHHHHHHcC--CcEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLG--IESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG--~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
-+-+++.+.++.+++.| ++.|+|-.=+... . .|| ..|+ +|- +.++|++++|++|+++++
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~---~----g~f-~~d~~~FP---dp~~mi~~l~~~G~k~~l 88 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWETC---Y----GDF-DFDPTKFP---DPKGMIDQLHDLGFRVTL 88 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCcccc---C----Ccc-ccChhhCC---CHHHHHHHHHHCCCeEEE
Confidence 45678888899999988 5688886533221 1 122 3333 555 478999999999999999
No 78
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=91.15 E-value=1.2 Score=35.69 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=43.7
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEE--cC-----CccCCC-CCCC-CCcc------CCCC--CCCCCCCHHHHHHHHHHHHH
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWI--QP-----FYPAGG-ADLG-YDVS------NYVD--VDPLFGDMHDFEILIEEAHS 112 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l--~P-----i~~~~~-~~~g-Y~~~------d~~~--vd~~~Gt~~~~~~lv~~ah~ 112 (136)
=+...+++.|+.++..++|.+++ .- +-..+. ...| |... .+.. -...+=|.+|++++|+-|++
T Consensus 14 ~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~ 93 (326)
T cd06564 14 YSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKD 93 (326)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHH
Confidence 45788999999999999999988 11 111110 0000 0000 0000 11122278999999999999
Q ss_pred CCCcEEE
Q psy12953 113 RGKPKRT 119 (136)
Q Consensus 113 ~Gi~vil 119 (136)
+||+||-
T Consensus 94 rgI~vIP 100 (326)
T cd06564 94 RGVNIIP 100 (326)
T ss_pred cCCeEec
Confidence 9999998
No 79
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=91.11 E-value=0.34 Score=46.74 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=49.1
Q ss_pred CCCCCCHHHHHHhHHHHHHcCCcEEEEcCCcc---C-CCCCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953 46 GDGTGDMRGITEKLDHFVDLGIESLWIQPFYP---A-GGADLGYDVSNYVDVDPLFGDMHDFEI 105 (136)
Q Consensus 46 ~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~---~-~~~~~gY~~~d~~~vd~~~Gt~~~~~~ 105 (136)
+-|.|||.++.+.++.+++.|.+.|.|.|+.. . +..+++|.+.+=+..||-|=+.+++.+
T Consensus 187 ~~GIGDfgdL~~~~d~la~~Ga~~lqlnPLhA~~p~~p~~~SPYsp~Sr~alNPlYIdle~l~e 250 (1693)
T PRK14507 187 NWGIGDFGDLGRLVRDAALRGASFLGLSPLHALFPTDPAKASPYSPSSRLFLNTLYIDVEAVPD 250 (1693)
T ss_pred CCCcccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcCcccccccChHhcCHhhccc
Confidence 34579999999999999999999999999982 2 245789999998888888877655433
No 80
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=91.05 E-value=0.96 Score=36.69 Aligned_cols=70 Identities=10% Similarity=-0.009 Sum_probs=43.7
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcC---------CccCCC--CCCCCCccC-------CCCCCC--CCCCHHHHHHHHHH
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQP---------FYPAGG--ADLGYDVSN-------YVDVDP--LFGDMHDFEILIEE 109 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~P---------i~~~~~--~~~gY~~~d-------~~~vd~--~~Gt~~~~~~lv~~ 109 (136)
=+.+.+++.++.++..++|.+++-- +-..|. ...+|...+ .....+ .+=|.+|++++|+-
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~y 94 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAY 94 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHH
Confidence 3578889999999999999998721 111111 001111111 001111 11268999999999
Q ss_pred HHHCCCcEEE
Q psy12953 110 AHSRGKPKRT 119 (136)
Q Consensus 110 ah~~Gi~vil 119 (136)
|+++||+||-
T Consensus 95 A~~rgI~VIP 104 (357)
T cd06563 95 AAERGITVIP 104 (357)
T ss_pred HHHcCCEEEE
Confidence 9999999999
No 81
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=90.92 E-value=0.58 Score=31.91 Aligned_cols=46 Identities=28% Similarity=0.373 Sum_probs=33.1
Q ss_pred HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953 52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh 122 (136)
-....+.++.+.++|+..+|+.|= ++-+++++.|+++||+++=.|-
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~g-------------------------~~~~~~~~~a~~~gi~vigp~C 110 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQPG-------------------------AESEELIEAAREAGIRVIGPNC 110 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-TT-------------------------S--HHHHHHHHHTT-EEEESS-
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcc-------------------------hHHHHHHHHHHHcCCEEEeCCc
Confidence 456677889999999999999883 3457888899999999986443
No 82
>TIGR03356 BGL beta-galactosidase.
Probab=90.77 E-value=0.85 Score=37.98 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=45.5
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREV 123 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~ 123 (136)
..-+....+-++-+++||++++-++=-+..-... |.. . ..-...+-.++++++|+++||++|+ .+|-
T Consensus 50 ~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~-g~~-----~--~n~~~~~~y~~~i~~l~~~gi~pivtL~Hf 117 (427)
T TIGR03356 50 CDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPE-GTG-----P--VNPKGLDFYDRLVDELLEAGIEPFVTLYHW 117 (427)
T ss_pred ccHHHhHHHHHHHHHHcCCCeEEcccchhhcccC-CCC-----C--cCHHHHHHHHHHHHHHHHcCCeeEEeeccC
Confidence 3457788888999999999999885433221110 100 0 1112346689999999999999999 6664
No 83
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=90.60 E-value=2.1 Score=34.28 Aligned_cols=67 Identities=13% Similarity=0.186 Sum_probs=44.1
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCC-----CCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDV-----DPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~v-----d~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
-+.+.+.+.|+.++..++|.+++-=. ...++.+....|-.+ ...+=|.+|++++++-|.++||+||-
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~Hlt---Dd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIP 86 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLT---DDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVP 86 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEe---cCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 45788999999999999997776210 000111111122111 11123789999999999999999998
No 84
>PRK01060 endonuclease IV; Provisional
Probab=90.37 E-value=1.3 Score=34.04 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=38.4
Q ss_pred HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcE
Q psy12953 52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPK 117 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~v 117 (136)
+.++.+.++.++++|++.|.|.+--+. . ..+..-+.++++++.+.+.++|+++
T Consensus 11 ~~~~~~~l~~~~~~G~d~vEl~~~~p~-----~--------~~~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 11 AGGLEGAVAEAAEIGANAFMIFTGNPQ-----Q--------WKRKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCCC-----C--------CcCCCCCHHHHHHHHHHHHHcCCCC
Confidence 345788899999999999998652111 1 1111236788999999999999993
No 85
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=90.32 E-value=1.4 Score=38.93 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=44.1
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCC---CCCCCCccCCCCCCCCCCCHHHHHH-HHHHHHHCCCcEEE-eccCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGG---ADLGYDVSNYVDVDPLFGDMHDFEI-LIEEAHSRGKPKRT-FREVT 124 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~---~~~gY~~~d~~~vd~~~Gt~~~~~~-lv~~ah~~Gi~vil-~nh~~ 124 (136)
.+-+.+...|+.++++|+|+|+|..+.+... .+.-|-+.++-.+ -.+-|.. .-+.+|++|++|.. +|...
T Consensus 331 qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~-----r~d~f~~~aw~l~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 331 QQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPM-----RADLFNRVAWQLRTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCcccccc-----ccCCcCHHHHHHHHhhCCEEEEecccee
Confidence 4456788889999999999999988755432 1223333333222 1112222 22339999999999 55554
Q ss_pred C
Q psy12953 125 K 125 (136)
Q Consensus 125 ~ 125 (136)
.
T Consensus 406 ~ 406 (671)
T PRK14582 406 F 406 (671)
T ss_pred e
Confidence 4
No 86
>KOG0496|consensus
Probab=90.21 E-value=0.89 Score=39.83 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=44.6
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+-.-+.+++...|++|+++|..-=.+..-+...| .-.|.++-||.+|++++|+.|+-|+|
T Consensus 46 ~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g---------~y~FsG~~DlvkFikl~~~~GLyv~L 106 (649)
T KOG0496|consen 46 STPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPG---------KYDFSGRYDLVKFIKLIHKAGLYVIL 106 (649)
T ss_pred CChhhhHHHHHHHHhcCCceeeeeeecccccCCCC---------cccccchhHHHHHHHHHHHCCeEEEe
Confidence 45567788889999999999986443332111111 11356788999999999999999999
No 87
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=89.91 E-value=1.9 Score=34.89 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=40.0
Q ss_pred HHhHHHHHHcCCcEEEEcCCcc-CCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccCC
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYP-AGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFAN 129 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~-~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~~ 129 (136)
.+.+.-||+.||+.|-|-=... ..+.+.||... .++.+.-.++.++|++.||||+++-|.+--+.+
T Consensus 66 qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggG--------nnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaD 132 (403)
T COG3867 66 QDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGG--------NNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWAD 132 (403)
T ss_pred HHHHHHHHHcCcCeEEEEEecCCccCCCCccCCC--------cchHHHHHHHHHHHHhcCcEEEeeccchhhccC
Confidence 4457789999999987742211 11122222211 122344556778889999999997787654443
No 88
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=89.89 E-value=0.75 Score=35.74 Aligned_cols=45 Identities=20% Similarity=0.130 Sum_probs=32.9
Q ss_pred HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+-+++++++||++|.++-=+-.- +.++..++|+.+++.|++|+-
T Consensus 87 ~~yl~~~k~lGf~~IEiSdGti~l-------------------~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 87 DEYLEECKELGFDAIEISDGTIDL-------------------PEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp HHHHHHHHHCT-SEEEE--SSS----------------------HHHHHHHHHHHCCTTSEEEE
T ss_pred HHHHHHHHHcCCCEEEecCCceeC-------------------CHHHHHHHHHHHHHCCCEEee
Confidence 455789999999999997522111 147889999999999999987
No 89
>PTZ00445 p36-lilke protein; Provisional
Probab=89.17 E-value=2.2 Score=32.60 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=39.0
Q ss_pred HHHhHHHHHHcCCcEEEE------cCCccCCCCCCCCCccCCCCCCCCCCC--HHHHHHHHHHHHHCCCcEEE
Q psy12953 55 ITEKLDHFVDLGIESLWI------QPFYPAGGADLGYDVSNYVDVDPLFGD--MHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 55 l~~~l~~l~~lG~~~I~l------~Pi~~~~~~~~gY~~~d~~~vd~~~Gt--~~~~~~lv~~ah~~Gi~vil 119 (136)
.....+.|++.||.+|.. .+++ +.||.-.+ .-+.++++ ..+|+.+++++++.||+|++
T Consensus 31 ~~~~v~~L~~~GIk~Va~D~DnTlI~~H-----sgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 31 ADKFVDLLNECGIKVIASDFDLTMITKH-----SGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHcCCeEEEecchhhhhhhh-----cccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 333467899999999987 2222 23433332 22333332 35799999999999999999
No 90
>KOG1065|consensus
Probab=88.94 E-value=2.6 Score=37.99 Aligned_cols=63 Identities=16% Similarity=0.309 Sum_probs=45.4
Q ss_pred CCHHHHHHhHHHHHHcCCc--EEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953 50 GDMRGITEKLDHFVDLGIE--SLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~--~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh 122 (136)
..++.+.+..++.+++|+. .+|.-=-+... -.||+.=+-.|++ ++++++.+|++|+|+++..|
T Consensus 308 ~nls~~~dvv~~~~~agiPld~~~~DiDyMd~-------ykDFTvd~~~fp~---~~~fv~~Lh~~G~kyvliid 372 (805)
T KOG1065|consen 308 KNLSVVRDVVENYRAAGIPLDVIVIDIDYMDG-------YKDFTVDKVWFPD---LKDFVDDLHARGFKYVLIID 372 (805)
T ss_pred ccHHHHHHHHHHHHHcCCCcceeeeehhhhhc-------ccceeeccccCcc---hHHHHHHHHhCCCeEEEEeC
Confidence 6788999999999999987 66654322221 3455433445665 99999999999999999333
No 91
>PLN02849 beta-glucosidase
Probab=88.52 E-value=3.8 Score=35.05 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=44.5
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT 124 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~ 124 (136)
.-+....+-++-+++||+++--++=-+..-..+ |-. .+ .-...+=.++||++++++||+-++ ..|-.
T Consensus 76 D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~-G~g-----~v--N~~gl~fY~~lid~l~~~GI~P~VTL~H~d 143 (503)
T PLN02849 76 DGYHKYKEDVKLMVETGLDAFRFSISWSRLIPN-GRG-----SV--NPKGLQFYKNFIQELVKHGIEPHVTLFHYD 143 (503)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcC-CCC-----CC--CHHHHHHHHHHHHHHHHcCCeEEEeecCCC
Confidence 347777888999999999998875332221100 100 11 122345589999999999999999 66653
No 92
>PRK15452 putative protease; Provisional
Probab=88.10 E-value=2.3 Score=35.75 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=39.2
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVTK 125 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~~ 125 (136)
|++..+. ..-+.|+++|++..---+.. ....+| +.+++++.++.||++|.+|.+ .|....
T Consensus 11 g~~e~l~----aAi~~GADaVY~G~~~~~~R----~~~~~f--------~~edl~eav~~ah~~g~kvyvt~n~i~~ 71 (443)
T PRK15452 11 GTLKNMR----YAFAYGADAVYAGQPRYSLR----VRNNEF--------NHENLALGINEAHALGKKFYVVVNIAPH 71 (443)
T ss_pred CCHHHHH----HHHHCCCCEEEECCCccchh----hhccCC--------CHHHHHHHHHHHHHcCCEEEEEecCcCC
Confidence 5555544 44578999999955311110 001223 468999999999999999999 665443
No 93
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=87.68 E-value=1.1 Score=36.56 Aligned_cols=55 Identities=9% Similarity=0.146 Sum_probs=38.5
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.++....+.|+..++.||+.|+.+=.. +..+ ..+ ..++|++|++.||++||+|++
T Consensus 11 ~~~~~~~~yi~~a~~~Gf~~iFTSL~i--pe~~----~~~---------~~~~~~~l~~~a~~~~~~v~~ 65 (357)
T PF05913_consen 11 SSFEENKAYIEKAAKYGFKRIFTSLHI--PEDD----PED---------YLERLKELLKLAKELGMEVIA 65 (357)
T ss_dssp S-HHHHHHHHHHHHCTTEEEEEEEE------------------------HHHHHHHHHHHHHHCT-EEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEECCCCc--CCCC----HHH---------HHHHHHHHHHHHHHCCCEEEE
Confidence 367788888999999999999886221 1110 111 247899999999999999999
No 94
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=87.61 E-value=3.1 Score=33.02 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=44.0
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccC
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFA 128 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~ 128 (136)
+...++..+...+.+++|+++|.+.|++-.... . .+-++++-+.+.+-++.+|++|..+....
T Consensus 82 ~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~--------------~---~gl~~hf~~ia~a~~lPvilYN~P~~tg~ 144 (299)
T COG0329 82 SNSTAEAIELAKHAEKLGADGILVVPPYYNKPS--------------Q---EGLYAHFKAIAEAVDLPVILYNIPSRTGV 144 (299)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCC--------------h---HHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 355788888999999999999999988754321 1 12344444444444888999887666544
Q ss_pred C
Q psy12953 129 N 129 (136)
Q Consensus 129 ~ 129 (136)
+
T Consensus 145 ~ 145 (299)
T COG0329 145 D 145 (299)
T ss_pred C
Confidence 3
No 95
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=87.49 E-value=2.5 Score=32.74 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=42.4
Q ss_pred CCHHHHHHhHHHHHHcC--CcEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLG--IESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG--~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+-+++.+.++.+++.| +++|+|-.-+.....+.+ ...|+ +|. +.++|++.+|++|++|++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~~~~f~------~~~d~~~Fp---dp~~~i~~l~~~g~~~~~ 84 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTDGYGDFT------FDWDAGKFP---NPKSMIDELHDNGVKLVL 84 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECcccccCCceee------eecChhhCC---CHHHHHHHHHHCCCEEEE
Confidence 45678888888888855 568998775544322221 13332 454 467899999999999999
No 96
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=87.43 E-value=1.9 Score=34.38 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=39.7
Q ss_pred HHHHHHhHHHHHHcCC--cEEEEcCCccCCCCCCCCCccCCCCCC-CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 52 MRGITEKLDHFVDLGI--ESLWIQPFYPAGGADLGYDVSNYVDVD-PLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~--~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
-+++.+.++.+++.|| ++|+|-+=+.... +..+.. +..| .+|- +.++|++++|++|++|++
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~-~~~~~~---f~~d~~~FP---dp~~mi~~L~~~g~k~~~ 91 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIE-GGKRYV---FNWNKDRFP---DPAAFVAKFHERGIRLAP 91 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccC-CCceee---eecCcccCC---CHHHHHHHHHHCCCEEEE
Confidence 4578888889999775 7888864322110 001111 2233 3454 577999999999999999
No 97
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=87.40 E-value=2.3 Score=31.61 Aligned_cols=49 Identities=20% Similarity=0.438 Sum_probs=41.3
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFR 121 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~n 121 (136)
++.....+.++.+.+.|+++|.+.|.... .+..++++|.+.||.|+.+|
T Consensus 39 ~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~-----------------------~~~~~l~~~~~~gIpvv~~d 87 (257)
T PF13407_consen 39 NDPEEQIEQIEQAISQGVDGIIVSPVDPD-----------------------SLAPFLEKAKAAGIPVVTVD 87 (257)
T ss_dssp TTHHHHHHHHHHHHHTTESEEEEESSSTT-----------------------TTHHHHHHHHHTTSEEEEES
T ss_pred CCHHHHHHHHHHHHHhcCCEEEecCCCHH-----------------------HHHHHHHHHhhcCceEEEEe
Confidence 56688888899999999999999997653 26688899999999999943
No 98
>PRK15447 putative protease; Provisional
Probab=87.38 E-value=3.1 Score=33.01 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=39.4
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREV 123 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~ 123 (136)
|++.++. ..+++.|+++||+.--. .+.. .+| +.+++++.++.+|++|.+|++ .|.+
T Consensus 15 ~~~~~~~---~~~~~~gaDaVY~g~~~-~~~R------~~f--------~~~~l~e~v~~~~~~gkkvyva~p~i 71 (301)
T PRK15447 15 ETVRDFY---QRAADSPVDIVYLGETV-CSKR------REL--------KVGDWLELAERLAAAGKEVVLSTLAL 71 (301)
T ss_pred CCHHHHH---HHHHcCCCCEEEECCcc-CCCc------cCC--------CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 4444444 47899999999998311 1100 022 579999999999999999999 4443
No 99
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=87.33 E-value=3.7 Score=35.60 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=40.6
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCc----cCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDV----SNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFR 121 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~----~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~n 121 (136)
+.....+.|+.|+...||.|.+=-.+-......+-.. ..+..+--|-=..+-+|++|++||+.||+.|..|
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Yn 190 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYN 190 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhH
Confidence 4567788899999999999998443322111111111 1122222232335789999999999999999933
No 100
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=87.06 E-value=1.5 Score=36.17 Aligned_cols=59 Identities=17% Similarity=0.080 Sum_probs=39.9
Q ss_pred HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCC-CCCCCCC---HHHHHHHHHHHHHCCCcEEEeccC
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVD-VDPLFGD---MHDFEILIEEAHSRGKPKRTFREV 123 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~-vd~~~Gt---~~~~~~lv~~ah~~Gi~vil~nh~ 123 (136)
.+.+.++++.|+++|-++=- |....... .+|.+=. ..-+.+.|+.|.+.||+|+++-|.
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~---------~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~ 138 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIG---------YWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHG 138 (407)
T ss_pred hhHHHHHHHcCCcEEEcccc---------hhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecc
Confidence 66688999999999998422 22211111 4565542 235778899999999999995444
No 101
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=87.00 E-value=2.2 Score=32.71 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=38.5
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.+.++.++++|++.|.+.+..... .....++ +.++++++.+.+.++||+|..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~----~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDE----RLARLDW--------SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCccc----ccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence 67788999999999999996421100 0011111 356899999999999999876
No 102
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=86.25 E-value=1.5 Score=35.27 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=40.7
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCC-CCCCCC----CHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVD-VDPLFG----DMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~-vd~~~G----t~~~~~~lv~~ah~~Gi~vil 119 (136)
++-..+.+.++.+++.|+|+|.+-= + .+.|.=..+-.. .-...| ...++++|++.+|++||.+|.
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavVIDv--K---dd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IA 79 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVVIDV--K---DDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIA 79 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEE--e---cCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEE
Confidence 4445677788999999999998831 1 122211111000 001111 136899999999999999988
No 103
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=86.12 E-value=3.6 Score=32.85 Aligned_cols=64 Identities=27% Similarity=0.460 Sum_probs=42.2
Q ss_pred CHHHHHHhHHHHHHcCC--cEEEEcCCccC-CCCCCCCCc-cCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLGI--ESLWIQPFYPA-GGADLGYDV-SNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~--~~I~l~Pi~~~-~~~~~gY~~-~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-+++.+.++.+++.|| ++|||. .... .....|+.. .|| ..|+ +|- +.++||+.+|++|++|++
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~f-~~d~~~FP---dp~~mi~~Lh~~G~~~~~ 89 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWNW-EWDPERYP---GLDELIEELKARGIRVLT 89 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeeee-EEChhhCC---CHHHHHHHHHHCCCEEEE
Confidence 56788999999999765 778886 3311 111223321 122 3443 444 578999999999999999
No 104
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=86.09 E-value=2.8 Score=32.35 Aligned_cols=55 Identities=11% Similarity=-0.037 Sum_probs=39.7
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..+.+.++.++++|++.|.|.+- ... .. +++.--+.++.+++.+.+.++||+|..
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~-~~~---~~--------~~~~~~~~~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVD-ETD---DR--------LSRLDWSREQRLALVNAIIETGVRIPS 70 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecC-Ccc---ch--------hhccCCCHHHHHHHHHHHHHcCCCcee
Confidence 36788899999999999999532 111 01 111112478899999999999999875
No 105
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=85.86 E-value=1.4 Score=35.88 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=40.4
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.....-++-|+...+.||+.|..+=....+.. . +-.+-|++|+++|++.|++||+
T Consensus 13 ~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~-~--------------~~~~~~~ell~~Anklg~~viv 67 (360)
T COG3589 13 SPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDA-E--------------LYFHRFKELLKEANKLGLRVIV 67 (360)
T ss_pred CcchhHHHHHHHHHHcCccceeeecccCCchH-H--------------HHHHHHHHHHHHHHhcCcEEEE
Confidence 44566777788999999999987544332211 0 1235699999999999999999
No 106
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=85.58 E-value=4.1 Score=32.90 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=40.7
Q ss_pred CHHHHHHhHHHHHHcCC--cEEEEcCCccCCC----CCCCCC------ccCCCC--CC--CCCCCHHHHHHHHHHHHHCC
Q psy12953 51 DMRGITEKLDHFVDLGI--ESLWIQPFYPAGG----ADLGYD------VSNYVD--VD--PLFGDMHDFEILIEEAHSRG 114 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~--~~I~l~Pi~~~~~----~~~gY~------~~d~~~--vd--~~~Gt~~~~~~lv~~ah~~G 114 (136)
+-+++.+.++.+++.|| ++|+|-+-..... .+..|. ...+.. .+ .+|- +.++||+++|++|
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FP---dp~~mi~~Lh~~G 98 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWP---NPKGMIDELHEQG 98 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCC---CHHHHHHHHHHCC
Confidence 56788899999999886 7888874221100 011111 111111 11 2333 6899999999999
Q ss_pred CcEEE
Q psy12953 115 KPKRT 119 (136)
Q Consensus 115 i~vil 119 (136)
++|++
T Consensus 99 ~kv~l 103 (340)
T cd06597 99 VKVLL 103 (340)
T ss_pred CEEEE
Confidence 99998
No 107
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=85.56 E-value=2.6 Score=33.84 Aligned_cols=58 Identities=29% Similarity=0.385 Sum_probs=41.0
Q ss_pred CHHHHHHhHHHHHHcCC--cEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLGI--ESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~--~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-+++.+.++.+++.|| +.|+|-.-+.. +|... ..|+ +|- +.++|++.+|++|+++++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-----~~~~f---~~d~~~fP---dp~~m~~~l~~~g~~~~~ 82 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD-----GYRVF---TWDKERFP---DPKELIKELHEQGFKVVT 82 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC-----CCCce---eeccccCC---CHHHHHHHHHHCCCEEEE
Confidence 45678888899999775 78888754432 22222 2343 454 458999999999999998
No 108
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=85.45 E-value=2.7 Score=33.87 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=35.7
Q ss_pred ccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHH
Q psy12953 27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106 (136)
Q Consensus 27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~l 106 (136)
.+=+.+-||--...-..+..+...+-.....-++++|+||+|+|.+=-|-+.. +-.+.
T Consensus 27 F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~----------------------nHd~C 84 (314)
T PF03198_consen 27 FFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSK----------------------NHDEC 84 (314)
T ss_dssp --EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS------------------------HHH
T ss_pred EEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCC----------------------CHHHH
Confidence 33355666654443222223344555666777999999999999986554332 23456
Q ss_pred HHHHHHCCCcEEE
Q psy12953 107 IEEAHSRGKPKRT 119 (136)
Q Consensus 107 v~~ah~~Gi~vil 119 (136)
.+++.+.||.|++
T Consensus 85 M~~~~~aGIYvi~ 97 (314)
T PF03198_consen 85 MSAFADAGIYVIL 97 (314)
T ss_dssp HHHHHHTT-EEEE
T ss_pred HHHHHhCCCEEEE
Confidence 6667889999999
No 109
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=84.96 E-value=3.5 Score=31.59 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=31.7
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
|+.+.++.+++.|++.|.+.... .+++.++++.++++|++.++
T Consensus 92 G~~~fi~~~~~aG~~giiipDl~-----------------------~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPDLP-----------------------PEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECCCC-----------------------HHHHHHHHHHHHHcCCcEEE
Confidence 45566667777777776664221 25899999999999999887
No 110
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=84.94 E-value=0.96 Score=22.78 Aligned_cols=19 Identities=26% Similarity=0.763 Sum_probs=14.8
Q ss_pred ChhHHHHHHHHHHHhhhcc
Q psy12953 1 MLSRIFLAFLGFLSLVSCQ 19 (136)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (136)
|++++++.+++++++++|.
T Consensus 6 mmKkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 6 MMKKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 5788888888888887773
No 111
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=84.79 E-value=4.4 Score=27.16 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=38.1
Q ss_pred HHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 60 DHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 60 ~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..+..+|...+.+.+..............|.--+=..=|...+..+.++.||++|++|+.
T Consensus 20 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 20 ATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 456778999988866422111101112223222334447788999999999999999999
No 112
>PRK12928 lipoyl synthase; Provisional
Probab=84.75 E-value=6.3 Score=31.23 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=48.3
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-+..++.+.++.|+++|++.|.+.+....... . -.=.+|=++++|+++-+.|.+.|.+-+.
T Consensus 215 GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~--~-------~~v~~~~~~~~f~~~~~~~~~~g~~~~~ 276 (290)
T PRK12928 215 GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLA--H-------LPVQRYWTPEEFEALGQIARELGFSHVR 276 (290)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCcc--C-------CceeeccCHHHHHHHHHHHHHcCCceeE
Confidence 367889999999999999999999886543211 1 1124566899999999999999998777
No 113
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.64 E-value=0.57 Score=35.06 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=35.7
Q ss_pred CCCCCCCCccCCCCCCCCC------CCHHHHHHHHHHHHHCCCcEEE
Q psy12953 79 GGADLGYDVSNYVDVDPLF------GDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 79 ~~~~~gY~~~d~~~vd~~~------Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+..+.||........+|.+ |+.+-++.=++++|++|+++.+
T Consensus 138 pa~dGGy~llgLrr~~pe~fe~ipwg~~~v~~lTl~~lrqng~~~~l 184 (211)
T COG3222 138 PAFDGGYYLLGLRRFAPELFEAIPWGTPDVLELTLKALRQNGIDVYL 184 (211)
T ss_pred ccccCcEEEEEeeccCHHHHhcCCCCCchHHHHHHHHHHHcCCcccc
Confidence 4457899998888888764 9999999999999999999998
No 114
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=83.42 E-value=10 Score=29.59 Aligned_cols=58 Identities=10% Similarity=0.053 Sum_probs=40.0
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHH-HHHHHHHHHHC-CCcEEEeccCCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHD-FEILIEEAHSR-GKPKRTFREVTK 125 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~-~~~lv~~ah~~-Gi~vil~nh~~~ 125 (136)
.+.++..+...+.+++|+++|.+.|++-... +.++ ++.+-+-|.+- ++.|+++|-.+.
T Consensus 80 ~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~------------------~~~~i~~~~~~v~~a~~~lpi~iYn~P~~ 139 (288)
T cd00954 80 LNLKESQELAKHAEELGYDAISAITPFYYKF------------------SFEEIKDYYREIIAAAASLPMIIYHIPAL 139 (288)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC------------------CHHHHHHHHHHHHHhcCCCCEEEEeCccc
Confidence 5678899999999999999999988652211 1233 33344445566 899999765543
No 115
>PLN02591 tryptophan synthase
Probab=83.40 E-value=5 Score=31.21 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=36.0
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
|+.+.+..+++.|++.|.+..+- .+|..+++++|+++||..+.
T Consensus 94 G~~~F~~~~~~aGv~GviipDLP-----------------------~ee~~~~~~~~~~~gl~~I~ 136 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVPDLP-----------------------LEETEALRAEAAKNGIELVL 136 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCC-----------------------HHHHHHHHHHHHHcCCeEEE
Confidence 77777888899999998887421 37899999999999999998
No 116
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=83.16 E-value=6 Score=29.82 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=42.4
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFAN 129 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~~ 129 (136)
..++.+.+-+..++++|++.+.+..+.+... + +.+-.++|+++|+ |+.+.+ |.+++...
T Consensus 69 ~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~------------i-----D~~~~~~Li~~a~--~~~~tF--HRAfD~~~ 127 (201)
T PF03932_consen 69 EEIEIMKEDIRMLRELGADGFVFGALTEDGE------------I-----DEEALEELIEAAG--GMPVTF--HRAFDEVP 127 (201)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEE--BETTSS------------B------HHHHHHHHHHHT--TSEEEE---GGGGGSS
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEEeECCCCC------------c-----CHHHHHHHHHhcC--CCeEEE--eCcHHHhC
Confidence 3467777888999999999999998876543 1 2467899999886 999999 88776654
No 117
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=82.72 E-value=6.4 Score=32.09 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=38.7
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREV 123 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~ 123 (136)
|++..+. ..-+.|+++|++.-- ... ..+.+ .+| +.+++++.|+.||++|.++++ .|-.
T Consensus 14 g~l~~l~----~ai~~GADaVY~G~~-~~~--~R~~a-~nf--------s~~~l~e~i~~ah~~gkk~~V~~N~~ 72 (347)
T COG0826 14 GNLEDLK----AAIAAGADAVYIGEK-EFG--LRRRA-LNF--------SVEDLAEAVELAHSAGKKVYVAVNTL 72 (347)
T ss_pred CCHHHHH----HHHHcCCCEEEeCCc-ccc--ccccc-ccC--------CHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 4554444 445678999999754 221 12223 344 367899999999999999998 4443
No 118
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=82.35 E-value=12 Score=29.16 Aligned_cols=58 Identities=14% Similarity=0.016 Sum_probs=40.8
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTK 125 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~ 125 (136)
.+.++..+...+.+++|+++|.+.|++-... -+.+++.+..++..+ ++.|+++|....
T Consensus 75 ~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~-----------------~~~~~i~~yf~~v~~-~lpv~iYn~P~~ 132 (279)
T cd00953 75 LNLEESIELARAAKSFGIYAIASLPPYYFPG-----------------IPEEWLIKYFTDISS-PYPTFIYNYPKA 132 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCcCCCC-----------------CCHHHHHHHHHHHHh-cCCEEEEeCccc
Confidence 4578999999999999999999988662210 023556555555555 899999775443
No 119
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=82.10 E-value=5.4 Score=31.10 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=33.0
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
|+.+.++.+++.|++.+.+..+ ..++.++++++|.++||..+.
T Consensus 105 G~e~f~~~~~~aGvdGviipDL-----------------------p~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIPDL-----------------------PPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred CHHHHHHHHHHcCCcEEEECCC-----------------------CHHHHHHHHHHHHHcCCcEEE
Confidence 5666677778888888777411 147899999999999999988
No 120
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=82.02 E-value=5.4 Score=30.48 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=37.3
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.+.++.++++|++.|.+.+-.. ..| .+.+ +.++.+++.+++.++||+|..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~----------~~~---~~~~-~~~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRP----------HAF---APDL-KAGGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCc----------ccc---cccc-CchHHHHHHHHHHHcCCeEEE
Confidence 578889999999999999943110 011 1111 235789999999999999977
No 121
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=81.78 E-value=5 Score=34.05 Aligned_cols=69 Identities=10% Similarity=0.119 Sum_probs=46.5
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVTK 125 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~~ 125 (136)
..+....+-++-+++||+++.-++=-+..-... |.. . .+.-...+-.++++++++++||+.|+ .+|-..
T Consensus 68 D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~-g~~----~--~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~ 137 (474)
T PRK09852 68 DFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQ-GDE----L--TPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDV 137 (474)
T ss_pred chhhhhHHHHHHHHHcCCCeEEeeceeeeeeeC-CCC----C--CCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCC
Confidence 457788889999999999999886543321110 100 0 01222346689999999999999999 667543
No 122
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=80.97 E-value=6.4 Score=31.74 Aligned_cols=60 Identities=17% Similarity=0.420 Sum_probs=38.2
Q ss_pred CHHHHHHhHHHHHHcC--CcEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLG--IESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG--~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-+++.+.++.+++.| ++.|+|-.-+... |. +| ..|+ +|-++. -++||+.+|++|++|++
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-----~~--~f-~~d~~~FPdp~-~~~mi~~L~~~G~k~~~ 84 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-----RR--DF-TLDPVRFPGLK-MPEFVDELHANGQHYVP 84 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECcccccC-----cc--ce-ecccccCCCcc-HHHHHHHHHHCCCEEEE
Confidence 3467888888888866 4778875433221 11 11 2222 333221 18999999999999999
No 123
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=80.50 E-value=12 Score=29.83 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=49.4
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-+..++.+.++.|+++|++.+-+.+.+..... .+.+ .+|=++++|+.+-+.|-+.|.+-+.
T Consensus 218 GETeee~~etl~~Lrelg~d~v~igqYl~p~~~--~~~v-------~~~~~p~~f~~~~~~a~~~gf~~v~ 279 (302)
T TIGR00510 218 GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRR--HLPV-------KRYVSPEEFDYYRSVALEMGFLHAA 279 (302)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeecccCCCCC--CCcc-------ccCCCHHHHHHHHHHHHHcCChheE
Confidence 477889999999999999999999887754321 2222 3556789999999999999998776
No 124
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=80.49 E-value=6.6 Score=29.85 Aligned_cols=45 Identities=11% Similarity=0.190 Sum_probs=28.5
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcE
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPK 117 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~v 117 (136)
.+...+..+++||.+.|=+.|+--. -..+||+.+.++|-++|+.+
T Consensus 136 ~vetAiaml~dmG~~SiKffPm~Gl-------------------~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 136 PVETAIAMLKDMGGSSIKFFPMGGL-------------------KHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp EHHHHHHHHHHTT--EEEE---TTT-------------------TTHHHHHHHHHHHHHCT-EE
T ss_pred cHHHHHHHHHHcCCCeeeEeecCCc-------------------ccHHHHHHHHHHHHHcCcee
Confidence 4566788999999999999997422 12577777777777777765
No 125
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=80.48 E-value=5.5 Score=33.02 Aligned_cols=66 Identities=23% Similarity=0.234 Sum_probs=40.6
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC-CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD-PLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-+.+.+.++.++++|++.+.|--=+.....+.--...|. .+| .+|- +.++.|++.+|++||+.=+
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-~~~~~kFP--~Gl~~l~~~i~~~Gmk~Gl 122 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-EPDPKKFP--NGLKPLADYIHSLGMKFGL 122 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-CBBTTTST--THHHHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCce-eEChhhhC--CcHHHHHHHHHHCCCeEEE
Confidence 3467788888999999999988543322111110012233 344 3553 4699999999999999988
No 126
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=80.33 E-value=13 Score=29.13 Aligned_cols=65 Identities=9% Similarity=0.049 Sum_probs=42.8
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT 124 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~ 124 (136)
.+..++.+.+..+++.|++.|=+.--.... . ..+ ......=+.++|++++++||++|+.|.+ |..
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~---~---~~~--~~~~~~~~~e~l~~~~~~A~~~g~~v~~--H~~ 181 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVL---S---PGD--PPPDTQFSEEELRAIVDEAHKAGLYVAA--HAY 181 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcC---C---CCC--CCcccCcCHHHHHHHHHHHHHcCCEEEE--EeC
Confidence 446777888888899999998654311000 0 000 0111122578999999999999999999 654
No 127
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=80.13 E-value=7.5 Score=30.15 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHCCCcEEE
Q psy12953 100 MHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil 119 (136)
.++..++++.++++|++.++
T Consensus 126 ~ee~~~~~~~~~~~gl~~i~ 145 (256)
T TIGR00262 126 LEESGDLVEAAKKHGVKPIF 145 (256)
T ss_pred hHHHHHHHHHHHHCCCcEEE
Confidence 36889999999999999776
No 128
>PLN02814 beta-glucosidase
Probab=80.08 E-value=5.9 Score=33.88 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=46.0
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVTK 125 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~~ 125 (136)
.-+....+-++-+|+||+++--++=-+..-.. .|-. .+.-...+=.++||+++.++||+.++ ..|-..
T Consensus 74 D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P-~G~g-------~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dl 142 (504)
T PLN02814 74 DGYHKYKEDVKLMAEMGLESFRFSISWSRLIP-NGRG-------LINPKGLLFYKNLIKELRSHGIEPHVTLYHYDL 142 (504)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEEeccHhhcCc-CCCC-------CCCHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 45777888899999999999887543322110 0100 12223345689999999999999999 777543
No 129
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=80.04 E-value=6.6 Score=31.29 Aligned_cols=59 Identities=24% Similarity=0.335 Sum_probs=39.9
Q ss_pred CCHHHHHHhHHHHHHcCC--cEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGI--ESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~--~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+-+++.+.++.+++.|| +.|+|-.=+-. +|... ..|+ +|- +.++|++.+|++|++|++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-----~~~~f---~~d~~~FP---dp~~~i~~l~~~g~k~~~ 82 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-----SYRLF---TWDPYRFP---EPKKLIDELHKRNVKLVT 82 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEEChhhhC-----CCCce---eechhcCC---CHHHHHHHHHHCCCEEEE
Confidence 356788888888888664 77888642211 22222 2233 344 567999999999999999
No 130
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=79.95 E-value=12 Score=28.21 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=37.9
Q ss_pred HHHHhHHHHHHcC-CcEEEEcCCccCCCCCCCCCc--cCCCCCCCCCCCHHHHHHHHHHHHHCCCcEE
Q psy12953 54 GITEKLDHFVDLG-IESLWIQPFYPAGGADLGYDV--SNYVDVDPLFGDMHDFEILIEEAHSRGKPKR 118 (136)
Q Consensus 54 ~l~~~l~~l~~lG-~~~I~l~Pi~~~~~~~~gY~~--~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vi 118 (136)
++.+..+.+++++ +..+.++|.+..+.. .|.. .+|...+-+--+.++++++.+.+++.|+++.
T Consensus 180 ei~~l~~~l~~l~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 180 SAHRLGEFIKDMGNIEKIELLPYHELGKH--KWEAMGEEYKLDGVKPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred HHHHHHHHHHhcCCcceEEEecCCccchh--HHHHcCCcccccCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 4555555666664 677888887766531 1111 1111112223457899999999999998874
No 131
>PRK10426 alpha-glucosidase; Provisional
Probab=79.90 E-value=11 Score=33.08 Aligned_cols=84 Identities=15% Similarity=0.325 Sum_probs=49.9
Q ss_pred cCCCCCccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcC--CcEEEEcCCccCC-CCCCCCCcc-CCCCCC
Q psy12953 19 QVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLG--IESLWIQPFYPAG-GADLGYDVS-NYVDVD 94 (136)
Q Consensus 19 ~~~~~~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG--~~~I~l~Pi~~~~-~~~~gY~~~-d~~~vd 94 (136)
++++..|.|--+..++. +. +.-+.+.+.++.+++.| +++|||.- +... ..++|.... || ..|
T Consensus 199 Gr~p~~P~Wal~G~~~g-----~~-------~~~~~v~~v~~~~r~~~IP~d~i~ldd-w~~~~~~~~g~~~~~~~-~~d 264 (635)
T PRK10426 199 GRQPELPDWAYDGVTLG-----IQ-------GGTEVVQKKLDTMRNAGVKVNGIWAQD-WSGIRMTSFGKRLMWNW-KWD 264 (635)
T ss_pred CCCCCCChhhccCcccc-----cc-------CCHHHHHHHHHHHHHcCCCeeEEEEec-ccccccccccccccccc-eEC
Confidence 55666677755344432 21 22357888888999987 68899952 2111 011221111 22 223
Q ss_pred -CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 95 -PLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 95 -~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+|- +.++||+++|++|+++++
T Consensus 265 ~~~FP---dp~~mi~~L~~~G~k~v~ 287 (635)
T PRK10426 265 SERYP---QLDSRIKQLNEEGIQFLG 287 (635)
T ss_pred hhhCC---CHHHHHHHHHHCCCEEEE
Confidence 2343 578899999999999999
No 132
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=79.47 E-value=7 Score=31.13 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=38.9
Q ss_pred CCHHHHHHhHHHHHHc--CCcEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDL--GIESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~l--G~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+-+++.+.++.+++. -+++|+|---+- . ..++ .+ +..|+ +|- +.++|++.+|++|++|++
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~--~~~~--~~-f~~d~~~FP---dp~~mi~~L~~~G~kv~~ 84 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFYW-P--KQGW--GE-WKFDPERFP---DPKAMVRELHEMNAELMI 84 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechhh-c--CCCc--ee-EEEChhhCC---CHHHHHHHHHHCCCEEEE
Confidence 3557788888888886 567888752111 1 1111 11 22332 454 457899999999999998
No 133
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=79.34 E-value=9.1 Score=29.28 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=31.6
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+..+.++.+++.|++.|.+.-. .+-..++.+++++.++++||++++
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dl--------------------p~e~~~~~~~~~~~~~~~Gl~~~~ 134 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDL--------------------LIDYPDDLEKYVEIIKNKGLKPVF 134 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCC--------------------CCCcHHHHHHHHHHHHHcCCCEEE
Confidence 4455566667777777766311 011235789999999999999999
No 134
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=79.32 E-value=12 Score=28.56 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=18.1
Q ss_pred HHHHhHHHHHHcCCcEEEEcCC
Q psy12953 54 GITEKLDHFVDLGIESLWIQPF 75 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi 75 (136)
++.+.++++.++|++.|.|..-
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~ 32 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLG 32 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECC
Confidence 4667889999999999988543
No 135
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.19 E-value=6.8 Score=30.07 Aligned_cols=54 Identities=13% Similarity=-0.063 Sum_probs=38.2
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.+.++.++++|++.|.|.+-- . .. .+.+.--+.++++++.+.++++||+|..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~-~----~~-------~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDE-S----DE-------RLARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCc-c----cc-------chhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 57788889999999999995321 0 00 0111112467899999999999999865
No 136
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=79.14 E-value=17 Score=29.72 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=54.6
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCcc-------------------CCCCCCCCC------ccCCCCCCC-CCCCHHHH
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYP-------------------AGGADLGYD------VSNYVDVDP-LFGDMHDF 103 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~-------------------~~~~~~gY~------~~d~~~vd~-~~Gt~~~~ 103 (136)
.|...-.+++..|++.|++-|-+.=.-. .-..+...+ ..|=.++|| .+|+.+.|
T Consensus 31 ~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPGNig~~e~v 110 (346)
T TIGR00612 31 IDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRINPGNIGFRERV 110 (346)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEECCCCCCCHHHH
Confidence 6778888899999999999998843211 111110000 122234776 48999999
Q ss_pred HHHHHHHHHCCCcEEE-eccCCCc
Q psy12953 104 EILIEEAHSRGKPKRT-FREVTKS 126 (136)
Q Consensus 104 ~~lv~~ah~~Gi~vil-~nh~~~~ 126 (136)
+++|++|+++|+.+-+ .||-|.+
T Consensus 111 ~~vv~~ak~~~ipIRIGVN~GSL~ 134 (346)
T TIGR00612 111 RDVVEKARDHGKAMRIGVNHGSLE 134 (346)
T ss_pred HHHHHHHHHCCCCEEEecCCCCCc
Confidence 9999999999999999 8887764
No 137
>PRK09989 hypothetical protein; Provisional
Probab=79.11 E-value=6.9 Score=29.81 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=32.4
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.+.++.++++||+.|.|.-.. + + +.+++.+.+.++||++..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~-------~-----~-----------~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPY-------D-----Y-----------STLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc-------c-----C-----------CHHHHHHHHHHcCCcEEE
Confidence 57788999999999999994311 1 1 145666668899999998
No 138
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=79.10 E-value=6.1 Score=31.73 Aligned_cols=59 Identities=22% Similarity=0.243 Sum_probs=40.4
Q ss_pred CCHHHHHHhHHHHHHcC--CcEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLG--IESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG--~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+-+++.+.++.+++.| ++.|+|-.=+- .+|.. +..|+ +|- +.++|++++|++|++|++
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-----~~~~~---f~~d~~~FP---dp~~mi~~L~~~G~k~~~ 82 (339)
T cd06603 21 KDQEDVKEVDAGFDEHDIPYDVIWLDIEHT-----DGKRY---FTWDKKKFP---DPEKMQEKLASKGRKLVT 82 (339)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEChHHh-----CCCCc---eEeCcccCC---CHHHHHHHHHHCCCEEEE
Confidence 34577888888888866 57788864332 12222 23343 454 558899999999999999
No 139
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=78.91 E-value=11 Score=31.06 Aligned_cols=58 Identities=29% Similarity=0.527 Sum_probs=37.0
Q ss_pred CHHHHHHhHHHHHHcCC--cEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLGI--ESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~--~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-+++.+.++.+++.|+ +++++-.-+.....++ ..|+ +|- +.+++++.+|++|+++++
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~f--------~~d~~~FP---d~~~~~~~l~~~G~~~~~ 101 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQDGYGDF--------TWDPERFP---DPKQMIDELHDQGIKVVL 101 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSBTTBTT---------B-TTTTT---THHHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHHHHHHcCCCccceecccccccccccc--------cccccccc---chHHHHHhHhhCCcEEEE
Confidence 45688888888888665 5677665443322222 2332 333 789999999999999999
No 140
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=78.90 E-value=3.5 Score=35.38 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHh-HHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHH
Q psy12953 47 DGTGDMRGITEK-LDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHD 102 (136)
Q Consensus 47 ~~~g~~~~l~~~-l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~ 102 (136)
-|.|||.++... ++.+++.|..-..|.|+.+... .+++|.+.+=+..||-|=+++.
T Consensus 29 ~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~~~~~ssPYs~~S~~a~NplyI~le~ 86 (513)
T TIGR00217 29 WGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPADFTRSPPYSISSARALNVYYIDLEA 86 (513)
T ss_pred CCccChHHHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCCCcCchhcccccHHhcChhh
Confidence 567999999854 6888888888888999998755 4455999998888887766544
No 141
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=78.85 E-value=12 Score=28.73 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=19.1
Q ss_pred HHHHHhHHHHHHcCCcEEEEcC
Q psy12953 53 RGITEKLDHFVDLGIESLWIQP 74 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~P 74 (136)
.++.+.++.++++|++.|.+..
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~ 31 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFL 31 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEc
Confidence 5788889999999999998853
No 142
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.84 E-value=1.2 Score=33.37 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHCCCcEEE-----eccCC
Q psy12953 99 DMHDFEILIEEAHSRGKPKRT-----FREVT 124 (136)
Q Consensus 99 t~~~~~~lv~~ah~~Gi~vil-----~nh~~ 124 (136)
+.+++++|++.||++|+++-+ ++|+.
T Consensus 165 ~~e~l~eFvd~Ah~hGL~~AlAGs~~~ehlp 195 (235)
T COG1891 165 DEEELEEFVDLAHEHGLEVALAGSLKFEHLP 195 (235)
T ss_pred cHHHHHHHHHHHHHcchHHHhccccccccch
Confidence 468999999999999999988 55543
No 143
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=78.78 E-value=8.9 Score=27.91 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=40.1
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.||....+..+-|.++|+..-. .|=+..-|++.+.++++.++++|++||+
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~--------------------~VvSAHRTPe~m~~ya~~a~~~g~~viI 62 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEV--------------------RVVSAHRTPEKMFEYAEEAEERGVKVII 62 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEE--------------------EEEeccCCHHHHHHHHHHHHHCCCeEEE
Confidence 6788888999999999886421 2223345788999999999999999999
No 144
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=78.70 E-value=9.8 Score=29.82 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=39.5
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHH-HHHHHHHHHHCCCcEEEeccCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHD-FEILIEEAHSRGKPKRTFREVT 124 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~-~~~lv~~ah~~Gi~vil~nh~~ 124 (136)
.+.++..+...+.+++|+++|.+.|++-... +.++ ++.+-+-+.+-++.|+++|...
T Consensus 83 ~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~------------------~~~~l~~~f~~va~a~~lPv~iYn~P~ 140 (293)
T PRK04147 83 VNTAEAQELAKYATELGYDAISAVTPFYYPF------------------SFEEICDYYREIIDSADNPMIVYNIPA 140 (293)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCcCCCC------------------CHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence 4678889999999999999999999763221 1233 3334444555688999977543
No 145
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=78.68 E-value=6.3 Score=30.56 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=34.8
Q ss_pred HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.+..|+++|++.|.+.. +. . ..-|..+.+. .+.++..+.++.+|+.||+|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~--E~-~------~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNL--DT-S------QEFYSNIIST-HTYDDRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcc--cC-C------HHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEE
Confidence 4456677777777777652 21 1 1122334433 4788889999999999999865
No 146
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=78.28 E-value=13 Score=29.44 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=36.9
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.++|+.+.+.++.+++.|+..|.+.-+.-.+. +.+++.++++.++++|+.+-+
T Consensus 135 ~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~------------------n~~ei~~l~~~~~~~gv~~~~ 187 (334)
T TIGR02666 135 GGRLEQVLAGIDAALAAGLEPVKLNTVVMRGV------------------NDDEIVDLAEFAKERGVTLRF 187 (334)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCC------------------CHHHHHHHHHHHHhcCCeEEE
Confidence 46888888888888888887444432221110 236899999999999988766
No 147
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=78.25 E-value=10 Score=29.28 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=38.5
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHH-HHHHHHHCCCcEEEeccCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEI-LIEEAHSRGKPKRTFREVT 124 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~-lv~~ah~~Gi~vil~nh~~ 124 (136)
.+.++..+...+.+++|+++|.++|++-... +.+++.+ +-+.+.+-++.|+++|...
T Consensus 76 ~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~------------------~~~~~~~~~~~ia~~~~~pi~iYn~P~ 133 (281)
T cd00408 76 NSTREAIELARHAEEAGADGVLVVPPYYNKP------------------SQEGIVAHFKAVADASDLPVILYNIPG 133 (281)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEECCCcCCCC------------------CHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence 4567888889999999999999999763221 2333333 3333444688888866644
No 148
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=77.77 E-value=8 Score=29.44 Aligned_cols=43 Identities=14% Similarity=0.055 Sum_probs=31.7
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
++.+.++.++++||+.|.|...+ .. +.+++.+.+.++||++..
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl~~~~--------------------~~---~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEFMFPY--------------------DY---DIEELKQVLASNKLEHTL 58 (258)
T ss_pred CHHHHHHHHHHhCCCEEEEcCCC--------------------CC---CHHHHHHHHHHcCCcEEE
Confidence 47788899999999999994210 01 255566667799999986
No 149
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=77.45 E-value=25 Score=28.41 Aligned_cols=74 Identities=18% Similarity=0.326 Sum_probs=50.7
Q ss_pred ceEEEEecccccCcCCCCCCCHHHHHHhHHHHHH-cCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHH
Q psy12953 31 AIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEE 109 (136)
Q Consensus 31 ~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~-lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ 109 (136)
.+|--.....|-...+....+++++.++++|+.+ .|+++|=|..=|..... + =+-+.+...|.+|+++
T Consensus 216 GvIgv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~-----~------p~gled~~~l~~l~~~ 284 (313)
T COG2355 216 GVIGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTG-----P------PDGLEDVGKLPNLTAA 284 (313)
T ss_pred CEEEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCC-----C------chhhcChhHHHHHHHH
Confidence 3444444445543311234699999999999999 89999998765533221 0 1346677899999999
Q ss_pred HHHCCC
Q psy12953 110 AHSRGK 115 (136)
Q Consensus 110 ah~~Gi 115 (136)
+.++|.
T Consensus 285 L~~~G~ 290 (313)
T COG2355 285 LIERGY 290 (313)
T ss_pred HHHcCC
Confidence 999985
No 150
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=77.19 E-value=14 Score=28.59 Aligned_cols=56 Identities=9% Similarity=0.023 Sum_probs=38.1
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHH-HHHHHCCCcEEEeccC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILI-EEAHSRGKPKRTFREV 123 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv-~~ah~~Gi~vil~nh~ 123 (136)
.+.++..+...+.+++|+++|.++|++-... +.+++.+.. +.+.+-++.|+++|..
T Consensus 79 ~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~------------------~~~~l~~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 79 NNTAEAIELTKRAEKAGADAALVVTPYYNKP------------------SQEGLYAHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcccccCCC------------------CHHHHHHHHHHHHhcCCCCEEEEECh
Confidence 4678889999999999999999998652211 133433333 3344468999996654
No 151
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=77.16 E-value=18 Score=28.22 Aligned_cols=57 Identities=9% Similarity=-0.007 Sum_probs=38.3
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHH-HHHHCCCcEEEeccCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIE-EAHSRGKPKRTFREVT 124 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~-~ah~~Gi~vil~nh~~ 124 (136)
.+.++..+...+.+++|+++|.++|++-... +.+++.+..+ -+.+-++.|+++|...
T Consensus 80 ~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~------------------~~~~i~~~~~~ia~~~~~pv~lYn~P~ 137 (292)
T PRK03170 80 NSTAEAIELTKFAEKAGADGALVVTPYYNKP------------------TQEGLYQHFKAIAEATDLPIILYNVPG 137 (292)
T ss_pred chHHHHHHHHHHHHHcCCCEEEECCCcCCCC------------------CHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence 4678889999999999999999988752211 2334333333 3444578999866543
No 152
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=76.97 E-value=17 Score=29.36 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=24.5
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCc
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFY 76 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~ 76 (136)
-.++.+.+.++.+.++|+++|.|-|+-
T Consensus 48 ~s~d~l~~~~~~~~~~Gi~~v~LFgv~ 74 (320)
T cd04824 48 YGVNRLEEFLRPLVAKGLRSVILFGVP 74 (320)
T ss_pred eCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 457889999999999999999999995
No 153
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=76.91 E-value=11 Score=26.92 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=22.3
Q ss_pred HHHHHHhHHHHHHcCCcEEEEcCCc
Q psy12953 52 MRGITEKLDHFVDLGIESLWIQPFY 76 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l~Pi~ 76 (136)
.+...+..++.+++|++.|.+.|.+
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~ 88 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINI 88 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccH
Confidence 6888899999999999999998765
No 154
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=76.91 E-value=12 Score=29.99 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=40.9
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHH-HHHHH-HHHHHCCCcEEE
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHD-FEILI-EEAHSRGKPKRT 119 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~-~~~lv-~~ah~~Gi~vil 119 (136)
.+-..+++++++|+++|+|.++.+.... |- +.-.+=.+.++--.+| |.+.+ +...+.|++|+.
T Consensus 18 nl~~l~~ri~~~~~~tV~Lqaf~d~~gd--g~-~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyA 82 (294)
T PF14883_consen 18 NLDKLIQRIKDMGINTVYLQAFADPDGD--GN-ADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYA 82 (294)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeCCCCC--Cc-eeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEE
Confidence 4455577999999999999998866432 20 1112223444444444 67777 555688999998
No 155
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=76.84 E-value=20 Score=24.26 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=35.9
Q ss_pred hHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCC----HHHHHHHHHHHHHCCCcEEE
Q psy12953 58 KLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGD----MHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 58 ~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt----~~~~~~lv~~ah~~Gi~vil 119 (136)
.++.+++.||++|.=.--........|.....+-..|..... .++..++++.+.+.|=+|++
T Consensus 18 ~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlV 83 (138)
T smart00195 18 NLALLKKLGITHVINVTNEVPNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLV 83 (138)
T ss_pred CHHHHHHcCCCEEEEccCCCCCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEE
Confidence 478999999999986532211111223333333333322211 24566778888888999999
No 156
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=76.60 E-value=14 Score=24.97 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=34.8
Q ss_pred HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
-+++..++..+++-|+++|+|..=...... .|..| ..+++++.+++.- |++|+.
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~-~~~CP-----------~~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNP-HGPCP-----------HIDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCC-CCCCC-----------CHHHHHHHHHHHh--CCCEee
Confidence 467888899999999999999885543221 11111 1345555554433 999986
No 157
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=76.39 E-value=15 Score=29.15 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=34.7
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.++.+.+.++.+++.|+..|.+.-+.-.+. +.+++.++++.+++.|+.+-+
T Consensus 140 ~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~------------------n~~ei~~l~~~~~~~gv~v~~ 192 (331)
T PRK00164 140 RDRLDQVLAGIDAALAAGLTPVKVNAVLMKGV------------------NDDEIPDLLEWAKDRGIQLRF 192 (331)
T ss_pred CCCHHHHHHHHHHHHHCCCCcEEEEEEEECCC------------------CHHHHHHHHHHHHhCCCeEEE
Confidence 46778888888888888875454433221110 136788888888888887655
No 158
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=76.35 E-value=11 Score=32.41 Aligned_cols=77 Identities=21% Similarity=0.359 Sum_probs=56.6
Q ss_pred ccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHH-HcCCcEEEEcCCccCC---CCCCCCCccCCCCCCCCCCCH
Q psy12953 25 KEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFV-DLGIESLWIQPFYPAG---GADLGYDVSNYVDVDPLFGDM 100 (136)
Q Consensus 25 ~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~-~lG~~~I~l~Pi~~~~---~~~~gY~~~d~~~vd~~~Gt~ 100 (136)
+.|=....+|.+...+ .-|.|+|.++...+.-+. +-|.+.+.+.|+.... +.+++|.+..=..+|+-|=+.
T Consensus 12 ~~~g~~v~L~~~~~~~-----~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~~~~~~~~SPYs~~S~~a~N~~~Id~ 86 (520)
T COG1640 12 MKWGSGVQLYSLRLPG-----SWGIGDFGDLAYLFVDFLARHGQDYWQILPLHATGPAYEEDSPYSPSSRRALNPLYIDV 86 (520)
T ss_pred ccccceeEEeeeccCC-----CCCccchhhHHHHHHHHHHHccCCeEEeccCCcccccccCCCCCCchhhhccCceeecH
Confidence 3443444455543322 245799999999976666 9999999999999877 456889988888888888887
Q ss_pred HHHHHH
Q psy12953 101 HDFEIL 106 (136)
Q Consensus 101 ~~~~~l 106 (136)
+.+-++
T Consensus 87 ~~l~e~ 92 (520)
T COG1640 87 EALPEF 92 (520)
T ss_pred HHhhhh
Confidence 766665
No 159
>PLN02428 lipoic acid synthase
Probab=76.34 E-value=16 Score=29.95 Aligned_cols=61 Identities=10% Similarity=0.127 Sum_probs=45.5
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
-+..++.+.++.|+++|++.+-+..... |+. .+..| .+|=++++|+++-+.+.+.|.+-+.
T Consensus 259 ET~Edv~e~l~~Lrelgvd~vtigqyL~-Ps~-------~h~~v-~~~v~p~~f~~~~~~~~~~gf~~v~ 319 (349)
T PLN02428 259 ETDEEVVQTMEDLRAAGVDVVTFGQYLR-PTK-------RHLPV-KEYVTPEKFEFWREYGEEMGFRYVA 319 (349)
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeccccC-CCc-------ceeee-ecccCHHHHHHHHHHHHHcCCceEE
Confidence 6778888899999999999987766542 211 11112 3466799999999999999998777
No 160
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=76.31 E-value=6.6 Score=34.85 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=39.7
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..+.+.|.-+|++|+|+|-+..+.=+-. ...| ..||. .-|.. +++.|++.|+.|++
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG--~fdf~--------~~D~~-~l~~a~~~Gl~vil 86 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEG--KFDFT--------WLDEI-FLERAYKAGLYVIL 86 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCcccc--ccCcc--------cchHH-HHHHHHhcCceEEE
Confidence 6788899999999999999977642211 1122 33332 23444 89999999999999
No 161
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=76.19 E-value=8.7 Score=29.75 Aligned_cols=56 Identities=25% Similarity=0.174 Sum_probs=37.6
Q ss_pred HHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccCCCC
Q psy12953 55 ITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFANNQ 131 (136)
Q Consensus 55 l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~~~~ 131 (136)
+.+-+.+++++||++|.++-=+-.. +.++..+||+.+.+.|..|.- .++..-++.+
T Consensus 92 vdeyl~e~~~lGfe~iEIS~G~i~m-------------------~~eek~~lIe~a~d~Gf~vls--EvGkk~~e~~ 147 (258)
T COG1809 92 VDEYLNEAKELGFEAIEISNGTIPM-------------------STEEKCRLIERAVDEGFMVLS--EVGKKDPESD 147 (258)
T ss_pred HHHHHHHHHHcCccEEEecCCeeec-------------------chHHHHHHHHHHHhcccEEeh--hhcccCcchh
Confidence 3455678888888888885421111 246888999999999988887 5555555443
No 162
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=76.15 E-value=16 Score=29.14 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=34.5
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.++|+.+.+.++.+++.|+..|.+.-+.-.+. +.+|+.++++-++++|+.+.+
T Consensus 136 ~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~------------------N~~ei~~~~~~~~~~gi~~~~ 188 (329)
T PRK13361 136 NGRLERVIAGIDAAKAAGFERIKLNAVILRGQ------------------NDDEVLDLVEFCRERGLDIAF 188 (329)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEEEEEECCC------------------CHHHHHHHHHHHHhcCCeEEE
Confidence 46677777777777777765444433221110 246888888889999888776
No 163
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=75.87 E-value=17 Score=29.36 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=24.9
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCcc
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYP 77 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~ 77 (136)
-..+.+.+.++.+.++|+++|.|-|+.+
T Consensus 51 ~s~d~l~~~v~~~~~~Gi~~v~lFgv~~ 78 (320)
T cd04823 51 LSIDELLKEAEEAVDLGIPAVALFPVTP 78 (320)
T ss_pred eCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 3578999999999999999999999953
No 164
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=75.84 E-value=14 Score=29.14 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=37.3
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHH-HHHHHHHCCCcEEEeccC
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEI-LIEEAHSRGKPKRTFREV 123 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~-lv~~ah~~Gi~vil~nh~ 123 (136)
+..+..+...+.+++|+++|.+.|++-... +.+++.+ +-+.+.+-++.|+++|..
T Consensus 86 ~t~~~i~~~~~a~~~Gadav~~~pP~y~~~------------------~~~~i~~~f~~va~~~~lpi~lYn~~ 141 (303)
T PRK03620 86 GTAQAIEYAQAAERAGADGILLLPPYLTEA------------------PQEGLAAHVEAVCKSTDLGVIVYNRD 141 (303)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCCCC------------------CHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 567888889999999999999998763211 1333333 333344558999998744
No 165
>PLN02417 dihydrodipicolinate synthase
Probab=75.68 E-value=20 Score=27.92 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=38.3
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTK 125 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~ 125 (136)
.+.++..+...+.+++|+++|.+.|++-... +.+++.+..++..+.. .|+++|....
T Consensus 80 ~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~------------------~~~~i~~~f~~va~~~-pi~lYn~P~~ 136 (280)
T PLN02417 80 NSTREAIHATEQGFAVGMHAALHINPYYGKT------------------SQEGLIKHFETVLDMG-PTIIYNVPGR 136 (280)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCccCCC------------------CHHHHHHHHHHHHhhC-CEEEEEChhH
Confidence 3568889999999999999999999762210 2344444444443345 8888766543
No 166
>PRK07094 biotin synthase; Provisional
Probab=75.63 E-value=5.9 Score=31.31 Aligned_cols=28 Identities=7% Similarity=0.073 Sum_probs=21.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 91 VDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 91 ~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..+.+. .+.++..+.++.+++.||.+..
T Consensus 156 ~~i~~~-~s~~~~~~~i~~l~~~Gi~v~~ 183 (323)
T PRK07094 156 AKLHPG-MSFENRIACLKDLKELGYEVGS 183 (323)
T ss_pred HHhCCC-CCHHHHHHHHHHHHHcCCeecc
Confidence 344453 6788999999999999998765
No 167
>PTZ00413 lipoate synthase; Provisional
Probab=75.62 E-value=18 Score=30.13 Aligned_cols=62 Identities=13% Similarity=0.186 Sum_probs=46.2
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-+..++.+.+..|+++|++.+=+.-....... +.. =.+|=++++|+++-+.+.+.|.+-+.
T Consensus 306 GET~eEvie~m~dLrelGVDivtIGQYL~Ps~~--------h~~-V~~yv~P~~F~~~~~~a~~~Gf~~v~ 367 (398)
T PTZ00413 306 GETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKT--------RLK-VSRYAHPKEFEMWEEEAMKMGFLYCA 367 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEeeccccCCCcc--------cCC-ceeccCHHHHHHHHHHHHHcCCceEE
Confidence 477889999999999999998877543322111 111 23566899999999999999998877
No 168
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=75.50 E-value=16 Score=28.45 Aligned_cols=56 Identities=9% Similarity=0.048 Sum_probs=38.0
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHH-HHHHHHHHHCCCcEEEeccC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDF-EILIEEAHSRGKPKRTFREV 123 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~-~~lv~~ah~~Gi~vil~nh~ 123 (136)
.+.++..+...+.+++|+++|.+.|++-... +.+++ +.+-+-+.+-++.|+++|-.
T Consensus 77 ~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~------------------~~~~i~~~~~~i~~~~~~pi~lYn~P 133 (285)
T TIGR00674 77 NATEEAISLTKFAEDVGADGFLVVTPYYNKP------------------TQEGLYQHFKAIAEEVDLPIILYNVP 133 (285)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCcCCCC------------------CHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 4578889999999999999999998763211 12333 33333345557888886644
No 169
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=75.49 E-value=9.3 Score=30.41 Aligned_cols=63 Identities=10% Similarity=0.172 Sum_probs=40.3
Q ss_pred CHHHHHHhHHHHHHcC--CcEEEEcCCccCCCC-CCCCCccCCCCCC-CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLG--IESLWIQPFYPAGGA-DLGYDVSNYVDVD-PLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG--~~~I~l~Pi~~~~~~-~~gY~~~d~~~vd-~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-+++.+.++.+++.| ++.|+|-.=+-.... ...|.. | ..| .+|-+ .++|++.+|++|++|++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~--f-~wd~~~FPd---p~~mi~~L~~~G~k~~~ 88 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGN--L-DWDRKAFPD---PAGMIADLAKKGVKTIV 88 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceee--e-EeccccCCC---HHHHHHHHHHcCCcEEE
Confidence 4567888888888876 578888753321100 111222 2 223 35654 57899999999999999
No 170
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=75.44 E-value=8.5 Score=30.70 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=35.8
Q ss_pred HHhHHHHHHcCCc-EEEEcCCccCCCCCCCCCccCC-CCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 56 TEKLDHFVDLGIE-SLWIQPFYPAGGADLGYDVSNY-VDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 56 ~~~l~~l~~lG~~-~I~l~Pi~~~~~~~~gY~~~d~-~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.|..+++.|++ .|.+..=. .+ ..-. ..++..+ +.+++.+.++.+|+.||+|..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES--~~------d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~ 173 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLET--AN------DRIREKSINKGS-TFEDFIRAAELARKYGAGVKA 173 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCc--CC------HHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEE
Confidence 4556677777776 56665411 10 1112 1344444 789999999999999999877
No 171
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=75.41 E-value=12 Score=27.03 Aligned_cols=66 Identities=12% Similarity=0.155 Sum_probs=39.8
Q ss_pred HHHHhHHHHHHcCCcEEEEc--CCccCCC-CCCCCCccCCCCCCCCCCC---HHHHHHHHHHHHHC----CCcEEE
Q psy12953 54 GITEKLDHFVDLGIESLWIQ--PFYPAGG-ADLGYDVSNYVDVDPLFGD---MHDFEILIEEAHSR----GKPKRT 119 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~--Pi~~~~~-~~~gY~~~d~~~vd~~~Gt---~~~~~~lv~~ah~~----Gi~vil 119 (136)
.+.+.++.|++.||++|.-. |-++... ...|+...++-..|-.-.+ .++|-++++.+.+. |=.|++
T Consensus 28 ~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~V 103 (166)
T PTZ00242 28 NLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAV 103 (166)
T ss_pred cHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEE
Confidence 34466789999999999954 2221111 1235555555444422223 35677777777655 888988
No 172
>PLN02705 beta-amylase
Probab=75.12 E-value=28 Score=30.81 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=50.6
Q ss_pred ceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcC---CccCCCCCCCCCccCCCCCCCCCCCHHHHHHHH
Q psy12953 31 AIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQP---FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILI 107 (136)
Q Consensus 31 ~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~P---i~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv 107 (136)
..+|-..|-..- ++.....+-+.+...|..||.+||+.|.+-= |.|... +..| ++...++|+
T Consensus 247 VpVyVMLPLd~V-~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~------P~~Y--------dWsgY~~L~ 311 (681)
T PLN02705 247 VPVYVMLAVGII-NNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWN------PQKY--------VWSGYRELF 311 (681)
T ss_pred eeEEEEeeccee-ccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCC------CCcC--------CcHHHHHHH
Confidence 567766554433 2223356678899999999999999998743 223211 1111 246789999
Q ss_pred HHHHHCCCcEEE
Q psy12953 108 EEAHSRGKPKRT 119 (136)
Q Consensus 108 ~~ah~~Gi~vil 119 (136)
+.+++.|+|+..
T Consensus 312 ~mvr~~GLKlqv 323 (681)
T PLN02705 312 NIIREFKLKLQV 323 (681)
T ss_pred HHHHHcCCeEEE
Confidence 999999999887
No 173
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=74.97 E-value=5.6 Score=33.29 Aligned_cols=61 Identities=15% Similarity=0.216 Sum_probs=41.0
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCC--CC-----CHHHHHHHHHHHHHCCCcEEE-ec
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPL--FG-----DMHDFEILIEEAHSRGKPKRT-FR 121 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~--~G-----t~~~~~~lv~~ah~~Gi~vil-~n 121 (136)
.-+....+-++-+++||+++--++=-+.. |-|. -| ..+-.++|++++.++||+.|+ .+
T Consensus 55 d~y~~y~eDi~l~~~lg~~~yRfsi~W~R--------------i~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~ 120 (455)
T PF00232_consen 55 DHYHRYKEDIALMKELGVNAYRFSISWSR--------------IFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY 120 (455)
T ss_dssp GHHHHHHHHHHHHHHHT-SEEEEE--HHH--------------HSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred cchhhhhHHHHHHHhhccceeeeecchhh--------------eeecccccccCHhHhhhhHHHHHHHHhhccceeeeee
Confidence 34677788899999999999988643321 1111 12 235589999999999999999 77
Q ss_pred cCC
Q psy12953 122 EVT 124 (136)
Q Consensus 122 h~~ 124 (136)
|-.
T Consensus 121 H~~ 123 (455)
T PF00232_consen 121 HFD 123 (455)
T ss_dssp SS-
T ss_pred ecc
Confidence 743
No 174
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=74.85 E-value=2 Score=30.88 Aligned_cols=45 Identities=11% Similarity=-0.012 Sum_probs=35.5
Q ss_pred HHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 59 LDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 59 l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
++.++++|++.|.+.+........ . .++++++.+.+.++||+|..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~-------~---------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE-------K---------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH-------H---------HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCccccc-------c---------hHHHHHHHHHHHHcCCeEEE
Confidence 457899999999998876543210 0 57899999999999999777
No 175
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=74.42 E-value=21 Score=28.94 Aligned_cols=28 Identities=11% Similarity=0.149 Sum_probs=24.7
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCcc
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYP 77 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~ 77 (136)
-..+.+.+.++.+.++|+++|.|-|+-+
T Consensus 58 ~sid~l~~~~~~~~~~Gi~~v~lFgv~~ 85 (322)
T PRK13384 58 LPESALADEIERLYALGIRYVMPFGISH 85 (322)
T ss_pred ECHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 4578899999999999999999999943
No 176
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=74.42 E-value=16 Score=28.46 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=44.4
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFAN 129 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~~ 129 (136)
..++-+.+-+..++++|++.+.+.-+.+...- +.+.+++|+++| .|+.+.+ |..++...
T Consensus 70 ~E~~~M~~di~~~~~~GadGvV~G~L~~dg~v-----------------D~~~~~~Li~~a--~~~~vTF--HRAfD~~~ 128 (248)
T PRK11572 70 GEFAAMLEDIATVRELGFPGLVTGVLDVDGHV-----------------DMPRMRKIMAAA--GPLAVTF--HRAFDMCA 128 (248)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeECCCCCc-----------------CHHHHHHHHHHh--cCCceEE--echhhccC
Confidence 45777788899999999999999887654321 145788888888 4788888 77776543
No 177
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=74.34 E-value=27 Score=27.42 Aligned_cols=58 Identities=9% Similarity=-0.001 Sum_probs=39.5
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHH-HHC-CCcEEEeccCCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEA-HSR-GKPKRTFREVTK 125 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~a-h~~-Gi~vil~nh~~~ 125 (136)
.+.++..+...+.+++|+++|.+.|++-... +.+++.+..++. .+. ++.|+++|-.+.
T Consensus 80 ~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~------------------~~~~i~~yf~~v~~~~~~lpv~lYn~P~~ 139 (290)
T TIGR00683 80 VNLKEAVELGKYATELGYDCLSAVTPFYYKF------------------SFPEIKHYYDTIIAETGGLNMIVYSIPFL 139 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCcCCCC------------------CHHHHHHHHHHHHhhCCCCCEEEEeCccc
Confidence 4578889999999999999999988763221 234544444443 334 688888665443
No 178
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=74.30 E-value=12 Score=29.31 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=30.0
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
|+.+.++.+++.|++.|.+.-.- .++..++.+.|+++||..++
T Consensus 107 G~e~F~~~~~~aGvdgviipDLP-----------------------~ee~~~~~~~~~~~gi~~I~ 149 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDLP-----------------------YEESDYLISVCNLYNIELIL 149 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCCC-----------------------HHHHHHHHHHHHHcCCCEEE
Confidence 45555556666666666553321 36788999999999999988
No 179
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=73.97 E-value=13 Score=29.67 Aligned_cols=69 Identities=7% Similarity=0.028 Sum_probs=44.8
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCC-CCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCCCc
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGAD-LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVTKS 126 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~-~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~~~ 126 (136)
+...+.....++-|+.-|..-...-++... ..+.+.-+ ++ .-.+.|+++++++|++|-++++ .+|.+..
T Consensus 33 ~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~---~d--~~~~~~~~l~~~vh~~G~~~~~QL~H~G~~ 103 (336)
T cd02932 33 DWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLW---ND--EQIEALKRIVDFIHSQGAKIGIQLAHAGRK 103 (336)
T ss_pred HHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeec---CH--HHHHHHHHHHHHHHhcCCcEEEEccCCCcC
Confidence 455566666777789998887766554311 11111100 11 1257899999999999999999 8887663
No 180
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=73.96 E-value=11 Score=32.08 Aligned_cols=69 Identities=9% Similarity=0.086 Sum_probs=45.6
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVTK 125 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~~ 125 (136)
.-+....+-++-+++||+++--++=-+..-.. .|.. . .+.-...+-.++||+++.++||+.++ .+|-..
T Consensus 66 D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P-~G~~-----~-~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dl 135 (477)
T PRK15014 66 DFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFP-KGDE-----A-QPNEEGLKFYDDMFDELLKYNIEPVITLSHFEM 135 (477)
T ss_pred CcccccHHHHHHHHHcCCCEEEecccceeecc-CCCC-----C-CCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCC
Confidence 45677788899999999999887543322110 0100 0 01222345689999999999999999 666543
No 181
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=73.85 E-value=11 Score=29.07 Aligned_cols=60 Identities=25% Similarity=0.348 Sum_probs=43.5
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCC-----------CCCCCCccCCCCCCCCCC-CHHHHHHHHHHHHHCCCcEEE
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGG-----------ADLGYDVSNYVDVDPLFG-DMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~-----------~~~gY~~~d~~~vd~~~G-t~~~~~~lv~~ah~~Gi~vil 119 (136)
.+...+..+++||.+.|=+.|+---.. ...| | .++|-=| +.+-|+++++.|-+.|++-++
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g-----~-~lEPTGGIdl~Nf~~I~~i~ldaGv~kvi 207 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHG-----F-YLEPTGGIDLDNFEEIVQIALDAGVEKVI 207 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcC-----C-ccCCCCCccHHhHHHHHHHHHHcCCCeec
Confidence 456678899999999999999853211 1122 2 2566655 467899999999999998777
No 182
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=73.61 E-value=8 Score=26.90 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=29.9
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
|+.+++.+ .+++.+++.|++.-.... .+++++++++|++.|++|.+
T Consensus 128 g~~~~l~~---~~~~~~id~v~ial~~~~---------------------~~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 128 GDLDDLPE---LVREHDIDEVIIALPWSE---------------------EEQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp --GGGHHH---HHHHHT--EEEE--TTS----------------------HHHHHHHHHHHHTTT-EEEE
T ss_pred cCHHHHHH---HHHhCCCCEEEEEcCccC---------------------HHHHHHHHHHHHhCCCEEEE
Confidence 44455444 889999999999753322 36899999999999999875
No 183
>PRK06256 biotin synthase; Validated
Probab=73.56 E-value=7.2 Score=31.03 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=32.9
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+.+..|+++|++.+.+.. ++ + ..-|..+.+. .+.++..+.++.+|+.||++..
T Consensus 153 e~l~~LkeaG~~~v~~~l--Et-s------~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~ 205 (336)
T PRK06256 153 EQAERLKEAGVDRYNHNL--ET-S------RSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCS 205 (336)
T ss_pred HHHHHHHHhCCCEEecCC--cc-C------HHHHhhcCCC-CCHHHHHHHHHHHHHcCCeecc
Confidence 345567777777666532 21 1 1223345443 3678888888999999988765
No 184
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=73.23 E-value=16 Score=29.98 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=53.3
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCcc-------------------CCCC---------CCCCCccCCCCCCCC-CCC-
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYP-------------------AGGA---------DLGYDVSNYVDVDPL-FGD- 99 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~-------------------~~~~---------~~gY~~~d~~~vd~~-~Gt- 99 (136)
.|...-.+++..|++.|++-|-+.=.-. .-.. ..|.+ =-.+||- +|+
T Consensus 39 ~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~---~iRINPGNig~~ 115 (360)
T PRK00366 39 ADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIHFDYRLALAAAEAGAD---ALRINPGNIGKR 115 (360)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCC---EEEECCCCCCch
Confidence 6778888899999999999998843221 1111 12211 1246653 688
Q ss_pred HHHHHHHHHHHHHCCCcEEE-eccCCCc
Q psy12953 100 MHDFEILIEEAHSRGKPKRT-FREVTKS 126 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil-~nh~~~~ 126 (136)
.+.|+++|++|+++|+.+-+ .||-|.+
T Consensus 116 ~~~v~~vv~~ak~~~ipIRIGvN~GSL~ 143 (360)
T PRK00366 116 DERVREVVEAAKDYGIPIRIGVNAGSLE 143 (360)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCccCh
Confidence 88999999999999999999 8887764
No 185
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=73.22 E-value=14 Score=29.36 Aligned_cols=29 Identities=31% Similarity=0.513 Sum_probs=20.1
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPA 78 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~ 78 (136)
.+..++.+.+++++++|++.+.+.|.+..
T Consensus 175 ~n~~ei~~~~~~~~~lGv~~i~i~p~~~~ 203 (318)
T TIGR03470 175 TDPEEVAEFFDYLTDLGVDGMTISPGYAY 203 (318)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCccc
Confidence 34566677777777777777777776644
No 186
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=72.99 E-value=12 Score=29.41 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=40.6
Q ss_pred CHHHHHHhHHHHHHcC--CcEEEEcCCccCCC----CCCCCCccCCCCCC-CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLG--IESLWIQPFYPAGG----ADLGYDVSNYVDVD-PLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG--~~~I~l~Pi~~~~~----~~~gY~~~d~~~vd-~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-+++.+.++.+++.| +++|+|-.-+.... +..+|... ..| .+|- +.++|++++|++|+++++
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~f---t~d~~~FP---dp~~mi~~Lh~~G~k~v~ 92 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGY---SWNRKLFP---DPEKLLQDLHDRGLKVTL 92 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCccee---EEChhcCC---CHHHHHHHHHHCCCEEEE
Confidence 4578888888888855 57788854332210 11233332 233 3454 568999999999999999
No 187
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=72.95 E-value=21 Score=30.02 Aligned_cols=58 Identities=17% Similarity=0.132 Sum_probs=40.4
Q ss_pred HHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHH----HHHHHHHHCCCcEEEeccCCCc
Q psy12953 59 LDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFE----ILIEEAHSRGKPKRTFREVTKS 126 (136)
Q Consensus 59 l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~----~lv~~ah~~Gi~vil~nh~~~~ 126 (136)
+..+++.+.+.|.+-+|..-. ...++..-|+..+++ .|.+.|+++|+.+++.+|+..+
T Consensus 163 ~~~i~~~~~~~vVIDSIq~l~----------~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtke 224 (454)
T TIGR00416 163 CANIEEENPQACVIDSIQTLY----------SPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKE 224 (454)
T ss_pred HHHHHhcCCcEEEEecchhhc----------ccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccC
Confidence 445677788888888876421 113445567766655 4777799999999998887654
No 188
>PRK13561 putative diguanylate cyclase; Provisional
Probab=72.72 E-value=12 Score=32.30 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=49.8
Q ss_pred eEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCC-----------ccCCCCCCCCC---
Q psy12953 32 IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYD-----------VSNYVDVDPLF--- 97 (136)
Q Consensus 32 ~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~-----------~~d~~~vd~~~--- 97 (136)
.+.|+....+. .+...+.+.+..++++||.--. - ..+.||. +.|+-.+|..|
T Consensus 520 l~lEi~E~~~~-------~~~~~~~~~~~~l~~~G~~i~l-d------dfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~ 585 (651)
T PRK13561 520 LILEVTESRRI-------DDPHAAVAILRPLRNAGVRVAL-D------DFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDG 585 (651)
T ss_pred EEEEEchhhhh-------cCHHHHHHHHHHHHHCCCEEEE-E------CCCCCcccHHHHhhcCCCCCcEEEECHHHHhc
Confidence 45555544443 5677888889999999997543 1 1122232 45666666544
Q ss_pred --CCHHHHHHHHHHHHHCCCcEEE
Q psy12953 98 --GDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 98 --Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+..-++.+++.||+.||+|+.
T Consensus 586 i~~~~~~v~~i~~~a~~l~i~viA 609 (651)
T PRK13561 586 LPEDDSMVAAIIMLAQSLNLQVIA 609 (651)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEE
Confidence 2345689999999999999998
No 189
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=72.70 E-value=16 Score=28.77 Aligned_cols=58 Identities=10% Similarity=0.057 Sum_probs=39.1
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHH-HHHHHHHHHHC-CCcEEEeccCCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHD-FEILIEEAHSR-GKPKRTFREVTK 125 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~-~~~lv~~ah~~-Gi~vil~nh~~~ 125 (136)
.+.++..+...+.+++|+++|.+.|++-... +.++ +..+.+-|++- ++.|+++|..+.
T Consensus 79 ~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~------------------~~~~l~~~f~~ia~a~~~lpv~iYn~P~~ 138 (294)
T TIGR02313 79 LNHDETLELTKFAEEAGADAAMVIVPYYNKP------------------NQEALYDHFAEVADAVPDFPIIIYNIPGR 138 (294)
T ss_pred chHHHHHHHHHHHHHcCCCEEEEcCccCCCC------------------CHHHHHHHHHHHHHhccCCCEEEEeCchh
Confidence 4567888889999999999999999763321 1233 33333444555 788998765443
No 190
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=72.57 E-value=12 Score=30.53 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=55.6
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCC-ccC------------------CCCCC------CCCccCCCCCCCC-CCCHHHH
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPF-YPA------------------GGADL------GYDVSNYVDVDPL-FGDMHDF 103 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi-~~~------------------~~~~~------gY~~~d~~~vd~~-~Gt~~~~ 103 (136)
.|.++-.+++..|.+.|++-|-+.=. .++ -..+. --...|=..|||- +|..+.|
T Consensus 33 ~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~~v 112 (361)
T COG0821 33 ADVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADIHFDYRLALEAAECGVDKVRINPGNIGFKDRV 112 (361)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEEECCcccCcHHHH
Confidence 67888899999999999999988422 111 00100 0001445678874 8989999
Q ss_pred HHHHHHHHHCCCcEEE-eccCCCc
Q psy12953 104 EILIEEAHSRGKPKRT-FREVTKS 126 (136)
Q Consensus 104 ~~lv~~ah~~Gi~vil-~nh~~~~ 126 (136)
+++|++|+++|+.+-+ .||-|.+
T Consensus 113 ~~vVe~Ak~~g~piRIGVN~GSLe 136 (361)
T COG0821 113 REVVEAAKDKGIPIRIGVNAGSLE 136 (361)
T ss_pred HHHHHHHHHcCCCEEEecccCchh
Confidence 9999999999999999 8887653
No 191
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=72.57 E-value=9.1 Score=32.35 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=46.4
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT 124 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~ 124 (136)
..-+....+-++-+++||+++--++=-+..-.. .|.. . ..-...+=.++|++++.++||+.++ .+|-.
T Consensus 49 ~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P-~g~~-----~--~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~d 117 (467)
T TIGR01233 49 SDFYHKYPVDLELAEEYGVNGIRISIAWSRIFP-TGYG-----E--VNEKGVEFYHKLFAECHKRHVEPFVTLHHFD 117 (467)
T ss_pred CchhhhHHHHHHHHHHcCCCEEEEecchhhccC-CCCC-----C--cCHHHHHHHHHHHHHHHHcCCEEEEeccCCC
Confidence 456788888999999999999888543322111 1110 1 1222345689999999999999999 66643
No 192
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=72.54 E-value=7.4 Score=30.40 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=43.6
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCC-HHHHHHHHHHHHHCCCcEEE--eccC
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGD-MHDFEILIEEAHSRGKPKRT--FREV 123 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt-~~~~~~lv~~ah~~Gi~vil--~nh~ 123 (136)
+++...+.|-..||+..|..+|.....+.+.+ ...-+ .+.|+...+.+.+.||++++ .|+.
T Consensus 85 ~~v~~a~~ya~aLg~~~vh~mag~~p~~~~~~----------~~~~t~venLr~aAd~l~~~gi~~liEplN~~ 148 (260)
T COG3622 85 LGVALAIEYATALGCKQVHCLAGIPPEGVDTE----------AMWATFVENLRYAADLLAAEGIRLLIEPLNLR 148 (260)
T ss_pred hHHHHHHHHHHHhCCCceeeeecCCCCCccHH----------HHHHHHHHHHHHHHHHHHhcCCEEEEecCCCC
Confidence 45666789999999999999997653321100 00011 36789999999999999999 7773
No 193
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=72.50 E-value=16 Score=28.02 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=41.9
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCcc--------CCCCCCCCC--------CCHHHHHHHHHHHHHC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVS--------NYVDVDPLF--------GDMHDFEILIEEAHSR 113 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~--------d~~~vd~~~--------Gt~~~~~~lv~~ah~~ 113 (136)
.+...+...+.+|+++||. |.|-- .+-||... |+-++|..| ....=++.+++.||+.
T Consensus 133 ~~~~~~~~~l~~L~~~G~~-ialDD------FGtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l 205 (256)
T COG2200 133 DDLDTALALLRQLRELGVR-IALDD------FGTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKL 205 (256)
T ss_pred cCHHHHHHHHHHHHHCCCe-EEEEC------CCCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHC
Confidence 4556677788899999965 33321 23445443 344455554 2234599999999999
Q ss_pred CCcEEE
Q psy12953 114 GKPKRT 119 (136)
Q Consensus 114 Gi~vil 119 (136)
|++|+.
T Consensus 206 ~~~vva 211 (256)
T COG2200 206 GLTVVA 211 (256)
T ss_pred CCEEEE
Confidence 999998
No 194
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=72.33 E-value=13 Score=28.02 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=31.6
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
++.+.++.++++|++.|.|...+ + . +.+++.+.+.++||+|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~-----------------~---~---~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY-----------------D---W---DAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc-----------------c---C---CHHHHHHHHHHcCCeEEE
Confidence 57788889999999999994210 0 1 245556667899999987
No 195
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=72.32 E-value=14 Score=29.75 Aligned_cols=54 Identities=15% Similarity=-0.011 Sum_probs=34.3
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCc-EEE
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKP-KRT 119 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~-vil 119 (136)
+.+..++++|++.|.+.-=.-. ..-+..+ .+-.+.++..+.++.+++.|+. |-+
T Consensus 101 e~l~~l~~~Gv~risiGvqS~~--------~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~ 155 (360)
T TIGR00539 101 EWCKGLKGAGINRLSLGVQSFR--------DDKLLFL-GRQHSAKNIAPAIETALKSGIENISL 155 (360)
T ss_pred HHHHHHHHcCCCEEEEecccCC--------hHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 5677888888888877542111 1112233 3456678888888888888885 434
No 196
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=72.17 E-value=16 Score=28.37 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=38.1
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHH-HHHHHHHHHHCCCcEEEeccC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHD-FEILIEEAHSRGKPKRTFREV 123 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~-~~~lv~~ah~~Gi~vil~nh~ 123 (136)
.+.++..+...+.+++|++++.++|++-... +.++ ++.+-+.|..-++.++++|+.
T Consensus 80 ~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~------------------s~~~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 80 NSTEEAIELARHAQDAGADAVLVIPPYYFKP------------------SQEELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEEESTSSSC------------------CHHHHHHHHHHHHHHSSSEEEEEEBH
T ss_pred hhHHHHHHHHHHHhhcCceEEEEeccccccc------------------hhhHHHHHHHHHHhhcCCCEEEEECC
Confidence 4578999999999999999999887643211 2334 334444455568999997764
No 197
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=72.00 E-value=7.5 Score=27.07 Aligned_cols=29 Identities=7% Similarity=-0.005 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHCCCcEEE-eccCCCccC
Q psy12953 100 MHDFEILIEEAHSRGKPKRT-FREVTKSFA 128 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil-~nh~~~~~~ 128 (136)
.+|+..++++++++||.|.. -||.-.+.|
T Consensus 67 ~~EV~pvi~aL~~~GI~vtAlHNH~l~e~P 96 (123)
T PF07485_consen 67 EDEVNPVISALRKNGIEVTALHNHWLFEQP 96 (123)
T ss_pred HHHHHHHHHHHHHCCceEEEEecccccCCC
Confidence 58999999999999999999 899876554
No 198
>PLN02803 beta-amylase
Probab=71.95 E-value=18 Score=31.28 Aligned_cols=56 Identities=14% Similarity=0.319 Sum_probs=41.0
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcC---CccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQP---FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~P---i~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+-+.+...|..||.+||+.|.+-= |.|... +..| ++...++|++.+++.|+|+..
T Consensus 104 ~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~------p~~Y--------dWsgY~~l~~mvr~~GLKlq~ 162 (548)
T PLN02803 104 NKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDG------PMKY--------NWEGYAELVQMVQKHGLKLQV 162 (548)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCC------CCcC--------CcHHHHHHHHHHHHcCCeEEE
Confidence 4448899999999999999998743 233211 1111 245789999999999999887
No 199
>PLN02801 beta-amylase
Probab=71.92 E-value=19 Score=31.03 Aligned_cols=74 Identities=18% Similarity=0.343 Sum_probs=49.3
Q ss_pred ceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcC---CccCCCCCCCCCccCCCCCCCCCCCHHHHHHHH
Q psy12953 31 AIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQP---FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILI 107 (136)
Q Consensus 31 ~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~P---i~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv 107 (136)
..+|-..|-..-. +.....+-+.+...|..||.+||+.|.+-= |.|... +..| ++...++|+
T Consensus 16 vpvyVMlPLd~V~-~~~~l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~------P~~Y--------dWsgY~~l~ 80 (517)
T PLN02801 16 VPVYVMLPLGVVT-ADNVLEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKG------PKQY--------DWSAYRSLF 80 (517)
T ss_pred eeEEEeeecceec-CCCccCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCC------CCcc--------CcHHHHHHH
Confidence 4566555444321 222346678899999999999999998743 233211 1111 246789999
Q ss_pred HHHHHCCCcEEE
Q psy12953 108 EEAHSRGKPKRT 119 (136)
Q Consensus 108 ~~ah~~Gi~vil 119 (136)
+.+++.|+|+..
T Consensus 81 ~mvr~~GLKlq~ 92 (517)
T PLN02801 81 ELVQSFGLKIQA 92 (517)
T ss_pred HHHHHcCCeEEE
Confidence 999999999877
No 200
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=71.92 E-value=20 Score=28.19 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=36.8
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHH-HHHHHHHCCCcEEEeccC
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEI-LIEEAHSRGKPKRTFREV 123 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~-lv~~ah~~Gi~vil~nh~ 123 (136)
..++..+...+.+++|++++.+.|++-... +.+++.+ +-+.+.+-++.|+++|.+
T Consensus 84 ~t~~ai~~a~~a~~~Gadav~~~pP~y~~~------------------s~~~i~~~f~~v~~a~~~pvilYn~~ 139 (296)
T TIGR03249 84 NTSDAIEIARLAEKAGADGYLLLPPYLING------------------EQEGLYAHVEAVCESTDLGVIVYQRD 139 (296)
T ss_pred cHHHHHHHHHHHHHhCCCEEEECCCCCCCC------------------CHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 467888889999999999999999763221 1233333 333344457888888743
No 201
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=71.90 E-value=7.2 Score=28.62 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=50.2
Q ss_pred ceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC--CCCCCCccCCCCCCCCCC--------CH
Q psy12953 31 AIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG--ADLGYDVSNYVDVDPLFG--------DM 100 (136)
Q Consensus 31 ~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~--~~~gY~~~d~~~vd~~~G--------t~ 100 (136)
.++.++...... .....+.+.+..++++|+. |.|--+-.... .....-..|+-.+|..+- ..
T Consensus 118 ~lvlei~e~~~~-------~~~~~~~~~i~~l~~~G~~-ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~ 189 (241)
T smart00052 118 RLELEITESVLL-------DDDESAVATLQRLRELGVR-IALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDE 189 (241)
T ss_pred HEEEEEeChhhh-------cChHHHHHHHHHHHHCCCE-EEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHH
Confidence 466666654433 3445566889999999997 56544211110 001111355666666542 22
Q ss_pred HHHHHHHHHHHHCCCcEEE
Q psy12953 101 HDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 101 ~~~~~lv~~ah~~Gi~vil 119 (136)
.-++.+++.||+.|++|++
T Consensus 190 ~~l~~l~~~~~~~~~~via 208 (241)
T smart00052 190 AIVQSIIELAQKLGLQVVA 208 (241)
T ss_pred HHHHHHHHHHHHCCCeEEE
Confidence 4589999999999999998
No 202
>PRK05481 lipoyl synthase; Provisional
Probab=71.76 E-value=28 Score=27.45 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=46.2
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-+..++.+.+..++++|++.+.+.|..+ +.. ..+ .| |..=..+.+++|.+.+.+.|+.-++
T Consensus 207 GET~ed~~~tl~~lrel~~d~v~if~Ys~-pa~------k~~-~v-~~~~k~~r~~~l~~~~~~i~~~~~~ 268 (289)
T PRK05481 207 GETDEEVLEVMDDLRAAGVDILTIGQYLQ-PSR------KHL-PV-ERYVTPEEFDEYKEIALELGFLHVA 268 (289)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEccCC-Ccc------ccC-CC-CCcCCHHHHHHHHHHHHHcCchheE
Confidence 36788899999999999999999988766 211 011 22 3344578999999999999996555
No 203
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=71.47 E-value=5.9 Score=32.99 Aligned_cols=56 Identities=16% Similarity=0.340 Sum_probs=40.4
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcC---CccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQP---FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~P---i~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
++++.+...|..||.+||+.|.+.= +.|... +..| ++...++|.+.+++.|+|+..
T Consensus 13 ~~~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~------p~~y--------dWs~Y~~l~~~vr~~GLk~~~ 71 (402)
T PF01373_consen 13 NDWNALEAQLRALKSAGVDGVMVDVWWGIVEGEG------PQQY--------DWSGYRELFEMVRDAGLKLQV 71 (402)
T ss_dssp SECHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSS------TTB-----------HHHHHHHHHHHHTT-EEEE
T ss_pred CcHHHHHHHHHHHHHcCCcEEEEEeEeeeeccCC------CCcc--------CcHHHHHHHHHHHHcCCeEEE
Confidence 6788999999999999999998742 222211 1111 246799999999999999988
No 204
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=71.24 E-value=33 Score=27.18 Aligned_cols=58 Identities=10% Similarity=0.024 Sum_probs=39.2
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHH-HHHHHHHC-CCcEEEeccCCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEI-LIEEAHSR-GKPKRTFREVTK 125 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~-lv~~ah~~-Gi~vil~nh~~~ 125 (136)
.+.++..+...+.+++|+++|.++|++-.+. +.+++.+ +-+-|.+- ++.|+++|....
T Consensus 87 ~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~------------------~~~~l~~yf~~va~a~~~lPv~iYn~P~~ 146 (309)
T cd00952 87 LNTRDTIARTRALLDLGADGTMLGRPMWLPL------------------DVDTAVQFYRDVAEAVPEMAIAIYANPEA 146 (309)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCCcCCCC------------------CHHHHHHHHHHHHHhCCCCcEEEEcCchh
Confidence 3568889999999999999999999762211 1233333 33334456 699999776543
No 205
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=71.06 E-value=14 Score=28.97 Aligned_cols=54 Identities=7% Similarity=0.038 Sum_probs=36.8
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHH-HHHHHHHCCCcEEEecc
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEI-LIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~-lv~~ah~~Gi~vil~nh 122 (136)
+.++..+...+.+++|+++|.+.|++-... +.+++.+ +-+.+.+-++.|+++|-
T Consensus 79 ~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~------------------~~~~i~~~f~~v~~~~~~pi~lYn~ 133 (289)
T cd00951 79 GTATAIAYAQAAEKAGADGILLLPPYLTEA------------------PQEGLYAHVEAVCKSTDLGVIVYNR 133 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCCCC------------------CHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 457888889999999999999988763211 2344333 33334456889998773
No 206
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=70.84 E-value=11 Score=31.95 Aligned_cols=69 Identities=12% Similarity=0.182 Sum_probs=45.4
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT 124 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~ 124 (136)
..-+....+-++-+++||+++--++=-+..-.. .|... . +.-...+=.++||+++.++||+.++ .+|-.
T Consensus 63 ~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P-~G~~~----~--~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~d 132 (476)
T PRK09589 63 IDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFP-QGDEL----E--PNEEGLQFYDDLFDECLKQGIEPVVTLSHFE 132 (476)
T ss_pred ccHHHhhHHHHHHHHHcCCCEEEeccchhhcCc-CCCCC----C--CCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 345777888899999999999887532221110 01000 0 1122345589999999999999999 77754
No 207
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=70.60 E-value=9.9 Score=26.20 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=24.9
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCC
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAG 79 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~ 79 (136)
....+.+.|+.+.+.|++.|.+.|.+-.+
T Consensus 54 ~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~ 82 (127)
T cd03412 54 EVDTPEEALAKLAADGYTEVIVQSLHIIP 82 (127)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEeCeeEC
Confidence 34578888999999999999999988765
No 208
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=70.59 E-value=28 Score=25.98 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=34.6
Q ss_pred HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953 52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh 122 (136)
-+...+.++.+.+.++++|.+.|.-. +.+.+.+++++++||.|+++|.
T Consensus 46 ~~~~~~~~~~l~~~~vDgiii~~~~~-----------------------~~~~~~i~~~~~~gIpvV~~d~ 93 (274)
T cd06311 46 TEQQNAQQDLLINRKIDALVILPFES-----------------------APLTQPVAKAKKAGIFVVVVDR 93 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCc-----------------------hhhHHHHHHHHHCCCeEEEEcC
Confidence 34555667778888889888877431 2366778889999999999543
No 209
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=70.44 E-value=30 Score=27.92 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=24.5
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCc
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFY 76 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~ 76 (136)
-+.+.+.+.++.+.++|+++|.|-|+-
T Consensus 48 ~s~d~l~~~~~~~~~~Gi~~v~LFgv~ 74 (314)
T cd00384 48 LSVDSLVEEAEELADLGIRAVILFGIP 74 (314)
T ss_pred eCHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 467899999999999999999999994
No 210
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=70.37 E-value=14 Score=27.62 Aligned_cols=62 Identities=13% Similarity=0.007 Sum_probs=32.6
Q ss_pred CHHHHHHhHHHHHHcC-CcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHH
Q psy12953 51 DMRGITEKLDHFVDLG-IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHS 112 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG-~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~ 112 (136)
+..++.+.++.++++| +..+.++|+.+.+...|-....++.--+..--+.+++.++.+.+.+
T Consensus 172 n~~ei~~l~~~~~~l~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (235)
T TIGR02493 172 SEEDIEALAEFVKTLPNVERVEVLPYHQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFKE 234 (235)
T ss_pred CHHHHHHHHHHHHhCCCCceEEecCCCcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHhh
Confidence 3455666666777777 5677777766543221111111211111122367888888777665
No 211
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=70.33 E-value=32 Score=27.47 Aligned_cols=71 Identities=18% Similarity=0.290 Sum_probs=49.2
Q ss_pred eEEEEecccccCcCCCCCCCHHHHHHhHHHHHH-cCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHH
Q psy12953 32 IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEA 110 (136)
Q Consensus 32 ~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~-lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~a 110 (136)
+|=-.+...|-.. .+..+++++.++++|+.+ .|+++|-|..=|..... .-+-+-+.+++..|++++
T Consensus 222 vigi~~~~~fl~~--~~~~~~~~~~~hi~~i~~l~G~dhVgiGsDfdg~~~-----------~~~gl~~~~~~~~l~~~L 288 (309)
T cd01301 222 VIGVNFYPAFLSP--GADATLDDVVRHIDYIVDLIGIDHVGLGSDFDGIGG-----------TPGGLEDVSDLPNLTAEL 288 (309)
T ss_pred EEEEeeeHHHhCC--CCCCCHHHHHHHHHHHHHhcCCCeEEECcccCCCCC-----------CccccCCHHHHHHHHHHH
Confidence 4433344444321 234789999999999999 79999999875543210 112366789999999999
Q ss_pred HHCCC
Q psy12953 111 HSRGK 115 (136)
Q Consensus 111 h~~Gi 115 (136)
.++|.
T Consensus 289 ~~rG~ 293 (309)
T cd01301 289 LERGY 293 (309)
T ss_pred HHcCC
Confidence 99986
No 212
>PLN02905 beta-amylase
Probab=70.27 E-value=23 Score=31.38 Aligned_cols=57 Identities=11% Similarity=0.214 Sum_probs=42.6
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcC---CccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQP---FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~P---i~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..+.+.+...|..||.+||+.|.+-= |.|... +..| ++...++|++.+++.|+|+..
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~g------P~~Y--------dWsgY~~L~~mvr~~GLKlqv 341 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHA------PQEY--------NWNGYKRLFQMVRELKLKLQV 341 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCC------CCcC--------CcHHHHHHHHHHHHcCCeEEE
Confidence 57788999999999999999998743 222211 1111 246789999999999999887
No 213
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=70.21 E-value=15 Score=28.41 Aligned_cols=49 Identities=10% Similarity=0.175 Sum_probs=36.4
Q ss_pred HHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 59 LDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 59 l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.+++.|+..+.+--..+.+.. -.|| =+.++|.+||+.||++|+.+=+
T Consensus 137 ~~~a~~aG~~gvMlDTa~Kdg~~-----L~d~-------~~~~~L~~Fv~~ar~~gL~~aL 185 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDTADKDGGS-----LFDH-------LSEEELAEFVAQARAHGLMCAL 185 (235)
T ss_pred HHHHHHcCCCEEEEecccCCCCc-----hhhc-------CCHHHHHHHHHHHHHccchhhc
Confidence 45778889998888766655421 2222 2468999999999999998877
No 214
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=69.51 E-value=28 Score=25.97 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=35.1
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh 122 (136)
++.+...+.++.+.+.++++|.+.|... +.+.++++.+.++|+.|+++|.
T Consensus 39 ~~~~~~~~~i~~~~~~~~Dgiii~~~~~-----------------------~~~~~~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 39 GDLTKQIADVEDLLTRGVNVLIINPVDP-----------------------EGLVPAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCc-----------------------cchHHHHHHHHHCCCCEEEecC
Confidence 4555666678888888888888876321 1244567888889999998554
No 215
>TIGR03586 PseI pseudaminic acid synthase.
Probab=69.40 E-value=21 Score=28.90 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=44.5
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCC----CCCCCCCccC-CCCCCCCCC-------CHHHHHHHHHHHHHCCCcE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAG----GADLGYDVSN-YVDVDPLFG-------DMHDFEILIEEAHSRGKPK 117 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~----~~~~gY~~~d-~~~vd~~~G-------t~~~~~~lv~~ah~~Gi~v 117 (136)
|+++-..+.++..++.|.++|=+.-..... .....|...+ .+.-.+.|. +.+++++|.+.|++.||.+
T Consensus 14 G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~ 93 (327)
T TIGR03586 14 GSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTI 93 (327)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcE
Confidence 899999999999999999998776532211 0001111100 000011111 2478899999999999999
Q ss_pred EE
Q psy12953 118 RT 119 (136)
Q Consensus 118 il 119 (136)
+-
T Consensus 94 ~s 95 (327)
T TIGR03586 94 FS 95 (327)
T ss_pred EE
Confidence 98
No 216
>PLN02998 beta-glucosidase
Probab=69.33 E-value=9.7 Score=32.54 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=44.5
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT 124 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~ 124 (136)
..+....+-++-+++||+++--++=-+..-.. .|-. . ..-...+=.++||+++.++||+.++ .+|-.
T Consensus 79 D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P-~G~g-----~--vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~d 146 (497)
T PLN02998 79 DQYHKYKEDVKLMADMGLEAYRFSISWSRLLP-SGRG-----P--INPKGLQYYNNLIDELITHGIQPHVTLHHFD 146 (497)
T ss_pred cHHHhhHHHHHHHHHcCCCeEEeeccHHhcCc-CCCC-----C--cCHHHHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 45777788899999999999877432221110 0100 1 1222345689999999999999999 66653
No 217
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=69.18 E-value=30 Score=28.38 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=38.4
Q ss_pred HHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHH----HHHHHHHHHCCCcEEEeccCCCcc
Q psy12953 59 LDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDF----EILIEEAHSRGKPKRTFREVTKSF 127 (136)
Q Consensus 59 l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~----~~lv~~ah~~Gi~vil~nh~~~~~ 127 (136)
++.+++.+.+.|.+-+|..-.. ..++..-|+..++ .+|.+.|+++|+.+++.+|+..+.
T Consensus 151 ~~~i~~~~~~lVVIDSIq~l~~----------~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g 213 (372)
T cd01121 151 LASIEELKPDLVIIDSIQTVYS----------SELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEG 213 (372)
T ss_pred HHHHHhcCCcEEEEcchHHhhc----------cccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCC
Confidence 3455666778787777653211 1233345565555 457788999999999999987643
No 218
>PLN02161 beta-amylase
Probab=69.18 E-value=26 Score=30.19 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=43.1
Q ss_pred CCCCHHHHHHhHHHHHHcCCcEEEEcC---CccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 48 GTGDMRGITEKLDHFVDLGIESLWIQP---FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 48 ~~g~~~~l~~~l~~l~~lG~~~I~l~P---i~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.....+.+...|..||.+||+.|.+-= |.|... +..| ++...++|++.+++.|+|+..
T Consensus 112 ~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~------p~~Y--------dWsgY~~l~~mvr~~GLKlq~ 172 (531)
T PLN02161 112 KIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFS------PLEF--------KWSLYEELFRLISEAGLKLHV 172 (531)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCC------CCcC--------CcHHHHHHHHHHHHcCCeEEE
Confidence 357788999999999999999998743 233211 1111 246789999999999999887
No 219
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=69.15 E-value=13 Score=31.46 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=47.0
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT 124 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~ 124 (136)
..-+....+-++-+++||+++--++=-+..-.. .|.. .+ .-...+=.++||+++.++||+-++ .+|-.
T Consensus 50 ~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P-~G~g-----~v--N~~gl~~Y~~lid~l~~~GI~P~VTL~H~d 118 (469)
T PRK13511 50 SDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFP-DGYG-----EV--NPKGVEYYHRLFAECHKRHVEPFVTLHHFD 118 (469)
T ss_pred cchhhhhHHHHHHHHHhCCCEEEeeccHhhcCc-CCCC-----Cc--CHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 355778888999999999999888543332111 1100 11 223456689999999999999999 67754
No 220
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=69.15 E-value=46 Score=27.10 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=40.9
Q ss_pred HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..++.+..+.+++++ ..|.|.|..+.+. ..|.. -+.+.+.++.+.++++|+.+.+
T Consensus 277 ~ed~~~La~ll~~l~-~~VnLIPynp~~~--~ky~~----------ps~e~l~~f~~~L~~~gi~v~i 331 (356)
T PRK14455 277 VEHAEELADLLKGIK-CHVNLIPVNPVPE--RDYVR----------TPKEDIFAFEDTLKKNGVNCTI 331 (356)
T ss_pred HHHHHHHHHHHhcCC-CcEEEEecCcCCC--CCCcC----------CCHHHHHHHHHHHHHCCCcEEE
Confidence 456666667788887 5789999887543 22322 4568899999999999999998
No 221
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=69.14 E-value=20 Score=30.45 Aligned_cols=70 Identities=13% Similarity=0.195 Sum_probs=46.3
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCCC
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVTK 125 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~~ 125 (136)
...+....+-++-+++||+++--++=-+..-.. .|... . +.-...+=.++||++++++||+.++ ..|-..
T Consensus 69 ~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P-~G~~~----~--~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dl 139 (478)
T PRK09593 69 IDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFP-KGDEL----E--PNEAGLQFYEDIFKECHKYGIEPLVTITHFDC 139 (478)
T ss_pred cchHHhhHHHHHHHHHcCCCEEEEecchhhccc-CCCCC----C--CCHHHHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 345788889999999999999888543322110 01000 0 1112245589999999999999999 666543
No 222
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=68.83 E-value=29 Score=29.67 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=40.0
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTK 125 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~ 125 (136)
++..++.++.+++++.|.+++.+.+... || .-++.|.+.|...|+-|+. |.+.
T Consensus 245 ~~~~em~~ra~~a~e~G~~~~mv~~~~~------G~---------------~al~~l~~~~~~~~l~Iha--HrA~ 297 (475)
T CHL00040 245 GTCEEMYKRAVFARELGVPIVMHDYLTG------GF---------------TANTSLAHYCRDNGLLLHI--HRAM 297 (475)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEecccc------cc---------------chHHHHHHHhhhcCceEEe--cccc
Confidence 5789999999999999999998887653 21 2377777777667777777 5443
No 223
>PRK02227 hypothetical protein; Provisional
Probab=68.62 E-value=14 Score=28.70 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=37.1
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+.++..++.||..+.|----+.+. .-.||. +.++|++|++.||++|+.+=+
T Consensus 135 ~l~~~a~~aGf~g~MlDTa~Kdg~-----~Lfd~l-------~~~~L~~Fv~~ar~~Gl~~gL 185 (238)
T PRK02227 135 SLPAIAADAGFDGAMLDTAIKDGK-----SLFDHM-------DEEELAEFVAEARSHGLMSAL 185 (238)
T ss_pred HHHHHHHHcCCCEEEEecccCCCc-----chHhhC-------CHHHHHHHHHHHHHcccHhHh
Confidence 445688999999999955444332 123332 468999999999999998766
No 224
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=68.44 E-value=58 Score=26.53 Aligned_cols=67 Identities=9% Similarity=0.130 Sum_probs=46.9
Q ss_pred EecccccCcCCCCCCCHHHHHHhHHHHHHcC----CcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Q psy12953 36 IYPRSFRDVNGDGTGDMRGITEKLDHFVDLG----IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAH 111 (136)
Q Consensus 36 v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG----~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah 111 (136)
+..+.+.| +..++.+..+.+++++ ...|.|.|.++.+.. ..+|.. -+.++++++.+.++
T Consensus 254 ~LI~GvND-------s~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~-----~~~~~~-----ps~e~v~~f~~~L~ 316 (347)
T PRK14453 254 IMLEGVND-------SKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKT-----PFKFQS-----SSAGQIKQFCSTLK 316 (347)
T ss_pred EeECCCCC-------CHHHHHHHHHHHhhccccCCcceEEEecCCCCCCC-----CccCCC-----CCHHHHHHHHHHHH
Confidence 34556653 3456777777888874 678999998876431 111221 34678999999999
Q ss_pred HCCCcEEE
Q psy12953 112 SRGKPKRT 119 (136)
Q Consensus 112 ~~Gi~vil 119 (136)
++|+.|.+
T Consensus 317 ~~Gi~vti 324 (347)
T PRK14453 317 SAGISVTV 324 (347)
T ss_pred HCCCcEEE
Confidence 99999988
No 225
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=68.31 E-value=36 Score=25.83 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=40.4
Q ss_pred HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCC-HHHHHHHHHHHHHCCCcEEEecc
Q psy12953 52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGD-MHDFEILIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt-~~~~~~lv~~ah~~Gi~vil~nh 122 (136)
++.+.+.++..+.+|+..|.+.|.... |.. .-++.+-. .+.++++++.|.++||++.+=||
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~------~~~----~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~ 150 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAG------YLT----PPNVIWGRLAENLSELCEYAENIGMDLILEPL 150 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCC------CCC----CHHHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 455666788999999999988775321 111 00111111 24599999999999999999443
No 226
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=68.25 E-value=7.3 Score=31.26 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=46.6
Q ss_pred eEEEEecccccCcCCCCCCCHHHHHHhHHHHHH-cCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHH
Q psy12953 32 IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEA 110 (136)
Q Consensus 32 ~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~-lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~a 110 (136)
+|=-.+...|-..+.+...+++++.++++|+.+ .|+++|=|..=|..... .-+.+.+..++..|++++
T Consensus 228 viGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGsDfdg~~~-----------~~~gl~~~~~~~~l~~~L 296 (320)
T PF01244_consen 228 VIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGSDFDGIDG-----------PPEGLEDPSDLPNLTEEL 296 (320)
T ss_dssp EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE--BTTTSS-----------HBBTBSSGGGHHHHHHHH
T ss_pred EEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECcccCCCCC-----------CCCccCCHHHHHHHHHHH
Confidence 444444445533322344789999999999988 89999999876632211 023344577899999999
Q ss_pred HHCCC
Q psy12953 111 HSRGK 115 (136)
Q Consensus 111 h~~Gi 115 (136)
.++|.
T Consensus 297 ~~rG~ 301 (320)
T PF01244_consen 297 LKRGY 301 (320)
T ss_dssp HHTTS
T ss_pred HHCCC
Confidence 99886
No 227
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=68.11 E-value=53 Score=27.77 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=46.6
Q ss_pred CCHHHHHHh-HHHHHHcCCcEEEEcCCcc-----CCCC-CCCCCc---cCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEK-LDHFVDLGIESLWIQPFYP-----AGGA-DLGYDV---SNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~-l~~l~~lG~~~I~l~Pi~~-----~~~~-~~gY~~---~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
++-+.+.++ ++++++.|++.++..|=.| .... ..++.+ .-|+.+.+--...+=.++++..+.+.||.+-.
T Consensus 105 ~dPR~vlkr~~~~l~~~G~~~~~~g~E~EFfLfd~~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~di~~~l~~~Gi~ie~ 184 (443)
T COG0174 105 RDPRSVLKRALARLKDEGLAPAVVGPELEFFLFDRDGRDPDGGRPADKGGYFDVAPLDEAEDFRRDIVEALEAAGIEIEA 184 (443)
T ss_pred CChHHHHHHHHHHHHhcCCccceeecceeEEEeecccCCcccCccCCCCcccCccccccHHHHHHHHHHHHHHCCCCcEe
Confidence 466666555 8999999997677777333 2111 110122 22455555544456688999999999999988
Q ss_pred ecc
Q psy12953 120 FRE 122 (136)
Q Consensus 120 ~nh 122 (136)
.+|
T Consensus 185 ~hh 187 (443)
T COG0174 185 IHH 187 (443)
T ss_pred ccc
Confidence 444
No 228
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=68.08 E-value=23 Score=28.62 Aligned_cols=70 Identities=6% Similarity=-0.085 Sum_probs=45.2
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCCCc
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVTKS 126 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~~~ 126 (136)
+...+.....++-|+.-|+.-....++.. .++ +.....-++ .-.+.++++++++|++|-++++ .+|.+..
T Consensus 37 ~~~~~~y~~rA~gG~GlIi~~~~~v~~~~-~~~-~~~~~~~~d--~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~ 107 (337)
T PRK13523 37 NFHLIHYGTRAAGQVGLVIVEATAVLPEG-RIS-DKDLGIWDD--EHIEGLHKLVTFIHDHGAKAAIQLAHAGRK 107 (337)
T ss_pred HHHHHHHHHHHcCCCeEEEECCeEECccc-cCC-CCceecCCH--HHHHHHHHHHHHHHhcCCEEEEEccCCCCC
Confidence 45566666777788999988766555431 111 111000011 1257899999999999999999 8887664
No 229
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=67.55 E-value=32 Score=26.80 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=35.7
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.++++.+.+.++.++++|+..|.+.-+.-.+. +.+++.++++-+++.|+.+-+
T Consensus 130 ~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~------------------n~~ei~~~~~~~~~~g~~~~~ 182 (302)
T TIGR02668 130 RGALDRVIEGIESAVDAGLTPVKLNMVVLKGI------------------NDNEIPDMVEFAAEGGAILQL 182 (302)
T ss_pred CCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCC------------------CHHHHHHHHHHHHhcCCEEEE
Confidence 46788888888888888876444432221100 246788888888888887665
No 230
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=67.50 E-value=6.1 Score=30.07 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHCCCcEEE
Q psy12953 99 DMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 99 t~~~~~~lv~~ah~~Gi~vil 119 (136)
+.+++++.++.+|++|+||++
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~ 69 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLL 69 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEE
Confidence 468899999999999999998
No 231
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=67.49 E-value=12 Score=27.46 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=49.5
Q ss_pred ceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCC--CCCCCccCCCCCCCCC--------CCH
Q psy12953 31 AIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGA--DLGYDVSNYVDVDPLF--------GDM 100 (136)
Q Consensus 31 ~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~--~~gY~~~d~~~vd~~~--------Gt~ 100 (136)
.++.++....+. .....+.+.+..+++.|+. |.|--+-..... ....-.-|+-.+|..+ ...
T Consensus 117 ~l~iei~e~~~~-------~~~~~~~~~~~~l~~~G~~-l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~ 188 (240)
T cd01948 117 RLVLEITESALI-------DDLEEALATLRRLRALGVR-IALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDR 188 (240)
T ss_pred HEEEEEecchhh-------CCHHHHHHHHHHHHHCCCe-EEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhH
Confidence 467777666554 4455688889999999998 444222111000 0001123444455433 334
Q ss_pred HHHHHHHHHHHHCCCcEEE
Q psy12953 101 HDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 101 ~~~~~lv~~ah~~Gi~vil 119 (136)
.-++.+++.||+.|++|++
T Consensus 189 ~~l~~l~~~~~~~~~~via 207 (240)
T cd01948 189 AIVRAIIALAHSLGLKVVA 207 (240)
T ss_pred HHHHHHHHHHHHCCCeEEE
Confidence 5689999999999999999
No 232
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=67.35 E-value=63 Score=26.49 Aligned_cols=64 Identities=13% Similarity=0.225 Sum_probs=45.7
Q ss_pred EecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q psy12953 36 IYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGK 115 (136)
Q Consensus 36 v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi 115 (136)
+....+.| +..++.+..+.++.+++ .|.|.|..+.+.. . |.. -+.+.++++.+.+.++|+
T Consensus 269 vLI~GvND-------s~e~a~~La~llk~l~~-~VnLIPyn~~~~~--~-----~~~-----ps~e~i~~f~~~l~~~gi 328 (356)
T PRK14462 269 LVIKDVND-------DLKSAKKLVKLLNGIKA-KVNLILFNPHEGS--K-----FER-----PSLEDMIKFQDYLNSKGL 328 (356)
T ss_pred EEECCCCC-------CHHHHHHHHHHHhhcCc-EEEEEeCCCCCCC--C-----CCC-----CCHHHHHHHHHHHHHCCC
Confidence 35666764 34566666778888875 8999998865432 2 222 236788888899999999
Q ss_pred cEEE
Q psy12953 116 PKRT 119 (136)
Q Consensus 116 ~vil 119 (136)
.|.+
T Consensus 329 ~vtv 332 (356)
T PRK14462 329 LCTI 332 (356)
T ss_pred cEEE
Confidence 9988
No 233
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=67.10 E-value=56 Score=25.32 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=47.9
Q ss_pred EEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHH---HHHHHHH
Q psy12953 33 MYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHD---FEILIEE 109 (136)
Q Consensus 33 iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~---~~~lv~~ 109 (136)
|-.+-|++|+|+.. .-+.+++.++.....+.|.+.|=+......+. .......+| ++.+|++
T Consensus 5 ilN~tpdSF~dg~~--~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~-------------~~~i~~~~E~~rl~~~v~~ 69 (257)
T TIGR01496 5 IVNVTPDSFSDGGR--FLSVDKAVAHAERMLEEGADIIDVGGESTRPG-------------ADRVSPEEELNRVVPVIKA 69 (257)
T ss_pred EEeCCCCCCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC-------------CCCCCHHHHHHHHHHHHHH
Confidence 45677999987622 13457788888888899999999954322211 011112334 8888899
Q ss_pred HHHC-CCcEEE
Q psy12953 110 AHSR-GKPKRT 119 (136)
Q Consensus 110 ah~~-Gi~vil 119 (136)
+++. ++.|.+
T Consensus 70 ~~~~~~~plsi 80 (257)
T TIGR01496 70 LRDQPDVPISV 80 (257)
T ss_pred HHhcCCCeEEE
Confidence 9887 888877
No 234
>PLN02389 biotin synthase
Probab=66.97 E-value=21 Score=29.46 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHCCCcEEE
Q psy12953 99 DMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 99 t~~~~~~lv~~ah~~Gi~vil 119 (136)
+.++-.+.++.||+.||++..
T Consensus 211 s~e~rl~ti~~a~~~Gi~v~s 231 (379)
T PLN02389 211 SYDDRLETLEAVREAGISVCS 231 (379)
T ss_pred CHHHHHHHHHHHHHcCCeEeE
Confidence 788999999999999999966
No 235
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=66.73 E-value=8.8 Score=30.82 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHCCCcEEE
Q psy12953 99 DMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 99 t~~~~~~lv~~ah~~Gi~vil 119 (136)
+.++-.+.++.||+.||++-.
T Consensus 177 ~~~~~~~~i~~a~~~Gi~v~s 197 (343)
T TIGR03551 177 STAEWIEIIKTAHKLGIPTTA 197 (343)
T ss_pred CHHHHHHHHHHHHHcCCcccc
Confidence 566777888888888887744
No 236
>PLN00197 beta-amylase; Provisional
Probab=66.53 E-value=33 Score=29.91 Aligned_cols=74 Identities=15% Similarity=0.282 Sum_probs=48.6
Q ss_pred ceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcC---CccCCCCCCCCCccCCCCCCCCCCCHHHHHHHH
Q psy12953 31 AIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQP---FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILI 107 (136)
Q Consensus 31 ~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~P---i~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv 107 (136)
..+|-..|-..-. +.....+-+.+...|..||.+||+.|.+-= |.|... +..| ++...++|+
T Consensus 106 vpvyVMLPLd~V~-~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~------p~~Y--------dWsgY~~L~ 170 (573)
T PLN00197 106 VPVYVMMPLDSVT-MGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERES------PGVY--------NWGGYNELL 170 (573)
T ss_pred eeEEEEeecceec-cCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCC------CCcC--------CcHHHHHHH
Confidence 4555554443321 222345667899999999999999998743 233211 1111 246789999
Q ss_pred HHHHHCCCcEEE
Q psy12953 108 EEAHSRGKPKRT 119 (136)
Q Consensus 108 ~~ah~~Gi~vil 119 (136)
+.+++.|+|+..
T Consensus 171 ~mvr~~GLKlq~ 182 (573)
T PLN00197 171 EMAKRHGLKVQA 182 (573)
T ss_pred HHHHHcCCeEEE
Confidence 999999999887
No 237
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=66.51 E-value=26 Score=28.32 Aligned_cols=58 Identities=14% Similarity=0.291 Sum_probs=39.7
Q ss_pred CHHHHHHhHHHHHHcC--CcEEEEcCCccCCCCCCCCCccCCCCCC-CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLG--IESLWIQPFYPAGGADLGYDVSNYVDVD-PLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG--~~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-+++.+.++.+++.+ +++|+|-.=+.. +|.. +..| .+|-+ .++|++++|++|+++++
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-----~~~~---Ft~d~~~FPd---p~~mv~~L~~~G~klv~ 82 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-----NYRT---FTTNGGGFPN---PKEMFDNLHNKGLKCST 82 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchhc-----CCCc---eeecCCCCCC---HHHHHHHHHHCCCeEEE
Confidence 4567888888888866 578888764322 2222 2334 35554 47899999999999999
No 238
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=66.38 E-value=50 Score=26.03 Aligned_cols=25 Identities=16% Similarity=0.504 Sum_probs=14.9
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCC
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPF 75 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi 75 (136)
+-+...+.++.+.+.++++|.+.|.
T Consensus 66 ~~~~~~~~i~~l~~~~vDGiIi~~~ 90 (330)
T PRK10355 66 NEETQMSQIENMINRGVDVLVIIPY 90 (330)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3344555566666667777776653
No 239
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=66.17 E-value=25 Score=28.31 Aligned_cols=66 Identities=11% Similarity=0.009 Sum_probs=44.6
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCC---HHHHHHHHHHHHHCCCcEEE-eccCCC
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGD---MHDFEILIEEAHSRGKPKRT-FREVTK 125 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt---~~~~~~lv~~ah~~Gi~vil-~nh~~~ 125 (136)
....+.....++-|+.-|+.-..+.++.. .++ + -.+..-+ .+.+++|++++|++|-++++ .+|.+.
T Consensus 33 ~~~~~~y~~~A~gG~GlIi~e~~~v~~~~-~~~-~-----~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~G~ 102 (343)
T cd04734 33 ERYIAYHEERARGGAGLIITEGSSVHPSD-SPA-F-----GNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHLGR 102 (343)
T ss_pred HHHHHHHHHHHhCCCCEEEEeeeeeCCcc-cCC-C-----CccccCCHHHHHHHHHHHHHHHhcCCeEEEeccCCCc
Confidence 45566677777788998887766655431 111 1 0111222 46899999999999999999 888765
No 240
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=65.96 E-value=67 Score=26.11 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=44.8
Q ss_pred ecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCc
Q psy12953 37 YPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKP 116 (136)
Q Consensus 37 ~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~ 116 (136)
..+.+.| +...+.+..+.++++++ .|-|.|..+.+. .+|. --+.++++++.+.++++|+.
T Consensus 262 LIpGvND-------s~e~a~~La~~l~~l~~-~VnLIPynp~~~--~~~~----------~ps~e~i~~f~~~L~~~Gi~ 321 (345)
T PRK14457 262 LLGGVND-------LPEHAEELANLLRGFQS-HVNLIPYNPIDE--VEFQ----------RPSPKRIQAFQRVLEQRGVA 321 (345)
T ss_pred EECCcCC-------CHHHHHHHHHHHhcCCC-eEEEecCCCCCC--CCCC----------CCCHHHHHHHHHHHHHCCCe
Confidence 4556653 34566666678888876 799999887653 2221 12468899999999999999
Q ss_pred EEE
Q psy12953 117 KRT 119 (136)
Q Consensus 117 vil 119 (136)
+.+
T Consensus 322 vtv 324 (345)
T PRK14457 322 VSV 324 (345)
T ss_pred EEE
Confidence 988
No 241
>KOG0053|consensus
Probab=65.96 E-value=14 Score=30.84 Aligned_cols=25 Identities=24% Similarity=0.098 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953 100 MHDFEILIEEAHSRGKPKRTFREVT 124 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil~nh~~ 124 (136)
..|++++++.||++|+-|+++|-.+
T Consensus 178 v~DI~~l~~la~~~g~~vvVDnTf~ 202 (409)
T KOG0053|consen 178 VPDIEKLARLAHKYGFLVVVDNTFG 202 (409)
T ss_pred cccHHHHHHHHhhCCCEEEEeCCcC
Confidence 3479999999999999999966544
No 242
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=65.89 E-value=29 Score=26.96 Aligned_cols=47 Identities=17% Similarity=0.376 Sum_probs=32.6
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
++...-.+.++.+-..|+++|.+.|.- .+.+...+++|.+.||.|+.
T Consensus 75 ~d~~~Q~~~i~~~ia~~~daIiv~~~d-----------------------~~~~~~~v~~a~~aGIpVv~ 121 (322)
T COG1879 75 NDVAKQIAQIEDLIAQGVDAIIINPVD-----------------------PDALTPAVKKAKAAGIPVVT 121 (322)
T ss_pred cChHHHHHHHHHHHHcCCCEEEEcCCC-----------------------hhhhHHHHHHHHHCCCcEEE
Confidence 334444455555556666666666643 34689999999999999999
No 243
>PRK12677 xylose isomerase; Provisional
Probab=65.86 E-value=33 Score=28.29 Aligned_cols=54 Identities=7% Similarity=-0.014 Sum_probs=36.3
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC-CHHHHHHHHHHHHHCCCcEEE
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG-DMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G-t~~~~~~lv~~ah~~Gi~vil 119 (136)
.++.+.++.++++|+++|.+..-.. ..+ +.... .....+++.+.+.+.||+|..
T Consensus 31 ~~~~E~v~~~a~~Gf~gVElh~~~l-----~p~--------~~~~~~~~~~~~~lk~~l~~~GL~v~~ 85 (384)
T PRK12677 31 LDPVEAVHKLAELGAYGVTFHDDDL-----VPF--------GATDAERDRIIKRFKKALDETGLVVPM 85 (384)
T ss_pred CCHHHHHHHHHHhCCCEEEeccccc-----CCC--------CCChhhhHHHHHHHHHHHHHcCCeeEE
Confidence 3688999999999999999832100 000 00011 123588888899999999886
No 244
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=65.73 E-value=32 Score=27.85 Aligned_cols=56 Identities=11% Similarity=0.161 Sum_probs=35.3
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+.....+-..-+++.|||+|.|.-+...+. .+.+.| .+.++++.+..+..||+|.+
T Consensus 55 ~~~R~~~YARllASiGINgvvlNNVNa~~~-----------~Lt~~~--l~~v~~lAdvfRpYGIkv~L 110 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVLNNVNANPK-----------LLTPEY--LDKVARLADVFRPYGIKVYL 110 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE-S-SS--CG-----------GGSTTT--HHHHHHHHHHHHHTT-EEEE
T ss_pred chhHHHHHHHHHhhcCCceEEecccccChh-----------hcCHHH--HHHHHHHHHHHhhcCCEEEE
Confidence 344555556678889999999988876542 122222 68999999999999999999
No 245
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=65.58 E-value=36 Score=27.50 Aligned_cols=68 Identities=9% Similarity=-0.049 Sum_probs=47.4
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccC------------------CCCCC---------CCCccCCCCCCCC-CCCHHH
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPA------------------GGADL---------GYDVSNYVDVDPL-FGDMHD 102 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~------------------~~~~~---------gY~~~d~~~vd~~-~Gt~~~ 102 (136)
+.++..+.+..++++|+..+. -|+... ++.-. .....|...+|+. .|+..+
T Consensus 175 ~~~~A~~~~~~l~~~~l~~iE-eP~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~ 253 (361)
T cd03322 175 TPNQAARFGKDVEPYRLFWME-DPTPAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITP 253 (361)
T ss_pred CHHHHHHHHHHhhhcCCCEEE-CCCCcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 455666666777788887776 454321 01100 1235677778875 599999
Q ss_pred HHHHHHHHHHCCCcEEE
Q psy12953 103 FEILIEEAHSRGKPKRT 119 (136)
Q Consensus 103 ~~~lv~~ah~~Gi~vil 119 (136)
.+++++.|+++|++++.
T Consensus 254 ~~~ia~~A~~~gi~~~~ 270 (361)
T cd03322 254 ARKIADLASLYGVRTGW 270 (361)
T ss_pred HHHHHHHHHHcCCeeec
Confidence 99999999999999998
No 246
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=65.43 E-value=71 Score=26.32 Aligned_cols=64 Identities=11% Similarity=0.103 Sum_probs=45.4
Q ss_pred EecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q psy12953 36 IYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGK 115 (136)
Q Consensus 36 v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi 115 (136)
+....+.| +...+.+..+.++++++ .|-|.|.++.+. . +|.. -+.++++++.+.+.++|+
T Consensus 268 pLIpGvND-------s~e~a~~La~ll~~l~~-~VnLIPYN~~~~--~-----~~~~-----ps~e~v~~f~~~L~~~Gi 327 (372)
T PRK11194 268 VMLDHVND-------GTEHAHQLAELLKDTPC-KINLIPWNPFPG--A-----PYGR-----SSNSRIDRFSKVLMEYGF 327 (372)
T ss_pred EeECCCCC-------CHHHHHHHHHHHhcCCc-eEEEecCCCCCC--C-----CCCC-----CCHHHHHHHHHHHHHCCC
Confidence 35666664 34566666678888875 999999886542 1 2221 246788999999999999
Q ss_pred cEEE
Q psy12953 116 PKRT 119 (136)
Q Consensus 116 ~vil 119 (136)
.|.+
T Consensus 328 ~vti 331 (372)
T PRK11194 328 TVIV 331 (372)
T ss_pred eEEE
Confidence 9988
No 247
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=65.15 E-value=23 Score=28.29 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHCCCcEEEecc
Q psy12953 100 MHDFEILIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil~nh 122 (136)
.+.+...+++|++.||.|+.++.
T Consensus 91 ~~al~~~l~~a~~~gIpVV~~d~ 113 (336)
T PRK15408 91 PDGLCPALKRAMQRGVKVLTWDS 113 (336)
T ss_pred HHHHHHHHHHHHHCCCeEEEeCC
Confidence 35678899999999999999444
No 248
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=65.06 E-value=33 Score=25.50 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=31.4
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFR 121 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~n 121 (136)
++.+...+.++.+...++++|.+.|... +.+.+.++.+.++|+.|+++|
T Consensus 40 ~~~~~~~~~i~~~~~~~vdgiii~~~~~-----------------------~~~~~~~~~~~~~~ipvV~~~ 88 (270)
T cd06308 40 DDNSKQVADIENFIRQGVDLLIISPNEA-----------------------APLTPVVEEAYRAGIPVILLD 88 (270)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEecCch-----------------------hhchHHHHHHHHCCCCEEEeC
Confidence 3445556667777777888887776431 123455666777888888844
No 249
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=64.90 E-value=12 Score=28.50 Aligned_cols=61 Identities=5% Similarity=-0.009 Sum_probs=37.3
Q ss_pred HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC-CHHHHHHHHHHHHHCCCcEEE--ecc
Q psy12953 52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG-DMHDFEILIEEAHSRGKPKRT--FRE 122 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G-t~~~~~~lv~~ah~~Gi~vil--~nh 122 (136)
.+.+.+.++..+++|++.|.+.+-. .+.++. .+..+- ..+.|+++.+.|.+.|+++.+ .||
T Consensus 84 ~~~~~~~i~~a~~lga~~i~~~~g~---------~~~~~~-~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~ 147 (258)
T PRK09997 84 RDGVAAAIRYARALGNKKINCLVGK---------TPAGFS-SEQIHATLVENLRYAANMLMKEDILLLIEPINH 147 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCC---------CCCCCC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 3456777889999999998764311 111110 000000 124678888889999999999 355
No 250
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=64.50 E-value=8.6 Score=23.64 Aligned_cols=59 Identities=17% Similarity=0.104 Sum_probs=33.9
Q ss_pred HHHHc-CCcEEEEcCCccCCCC-CCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 61 HFVDL-GIESLWIQPFYPAGGA-DLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 61 ~l~~l-G~~~I~l~Pi~~~~~~-~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.++ |.+...+.+....... .......|..-+=..-|...+..++++.++++|.+++.
T Consensus 19 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 19 ELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred HHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 45566 8877766542211000 00111222222333346668899999999999999986
No 251
>PRK11823 DNA repair protein RadA; Provisional
Probab=64.13 E-value=38 Score=28.41 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=39.4
Q ss_pred hHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHH----HHHHHHHHCCCcEEEeccCCCcc
Q psy12953 58 KLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFE----ILIEEAHSRGKPKRTFREVTKSF 127 (136)
Q Consensus 58 ~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~----~lv~~ah~~Gi~vil~nh~~~~~ 127 (136)
.+..+++.+.+.|.+-++...... .++..-|+..+++ +|.+.|+++|+.+++.+|+..+.
T Consensus 148 i~~~i~~~~~~lVVIDSIq~l~~~----------~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~ 211 (446)
T PRK11823 148 ILATIEEEKPDLVVIDSIQTMYSP----------ELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEG 211 (446)
T ss_pred HHHHHHhhCCCEEEEechhhhccc----------cccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCC
Confidence 334556677888888777533111 2233446665554 57888999999999998886643
No 252
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=64.11 E-value=17 Score=30.44 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHCCCcEEE
Q psy12953 99 DMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 99 t~~~~~~lv~~ah~~Gi~vil 119 (136)
+.++..+.++.+++.||.+..
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~ 341 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHG 341 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEE
Confidence 578899999999999999876
No 253
>TIGR03841 F420_Rv3093c probable F420-dependent oxidoreductase, Rv3093c family. This model describes a small family of enzymes in the bacterial luciferase-like monooxygenase family, which includes F420-dependent enzymes such as N5,N10-methylenetetrahydromethanopterin reductase as well as FMN-dependent enzymes. All members of this family are from species that produce coenzyme F420; SIMBAL analysis suggests that members of this family bind F420 rather than FMN.
Probab=63.83 E-value=8.8 Score=30.18 Aligned_cols=27 Identities=26% Similarity=0.621 Sum_probs=25.0
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCC
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPF 75 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi 75 (136)
.|+..++.++|.+.+++|++.+.+.|.
T Consensus 274 ~Gtpe~v~~~l~~~~~aGvd~~~l~~~ 300 (301)
T TIGR03841 274 HGDAAQVRARLEAYVDAGVDTVVLVPE 300 (301)
T ss_pred cCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 599999999999999999999999883
No 254
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=63.63 E-value=19 Score=26.19 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=37.7
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.|+.-..+...-|+++|+. ++- .+-...-+++++.++++.+.++|++|++
T Consensus 9 SD~~~~~~a~~~L~~~gi~-------~dv-------------~V~SaHRtp~~~~~~~~~a~~~g~~viI 58 (156)
T TIGR01162 9 SDLPTMKKAADILEEFGIP-------YEL-------------RVVSAHRTPELMLEYAKEAEERGIKVII 58 (156)
T ss_pred hhHHHHHHHHHHHHHcCCC-------eEE-------------EEECcccCHHHHHHHHHHHHHCCCeEEE
Confidence 4566666777888999987 111 2334455789999999999999999998
No 255
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=63.61 E-value=13 Score=28.56 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=35.1
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCc-EEE
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKP-KRT 119 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~-vil 119 (136)
..+.+.++++++.| .+|+|+.+...+.- .+-.+.|..|++.|+++|++ |.+
T Consensus 14 ~~l~~~~~~~k~~~-~~lHl~GLlSdGGV---------------HSh~~Hl~al~~~a~~~gv~~V~v 65 (223)
T PF06415_consen 14 PVLLEAIEHAKKNG-GRLHLMGLLSDGGV---------------HSHIDHLFALIKLAKKQGVKKVYV 65 (223)
T ss_dssp HHHHHHHHHHCCTT---EEEEEEESS-SS---------------S--HHHHHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHHHhcC-CeEEEEEEecCCCc---------------cccHHHHHHHHHHHHHcCCCEEEE
Confidence 45667778888877 67999998865431 12357899999999999987 777
No 256
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=63.37 E-value=35 Score=26.34 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=19.2
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCc
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFY 76 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~ 76 (136)
+.+...+.++.+...+++.|.+.|..
T Consensus 39 ~~~~q~~~i~~l~~~~vDgIIi~~~~ 64 (302)
T TIGR02634 39 NEAKQISQIENLIARGVDVLVIIPQN 64 (302)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 44556677788888888888887753
No 257
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=62.79 E-value=9 Score=30.82 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=27.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 91 VDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 91 ~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-+|..||...|-+++.+-||++|+.+++
T Consensus 163 Th~Dg~YGNl~Dakkva~ic~e~gvPlll 191 (382)
T COG1103 163 THVDGEYGNLADAKKVAKICREYGVPLLL 191 (382)
T ss_pred eccCCCcCCchhhHHHHHHHHHcCCceEe
Confidence 45899999999999999999999999999
No 258
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=62.76 E-value=35 Score=27.61 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=46.7
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccC----CCCCC-CCCccC------CCCCCCCCC-CHHHHHHHHHHHHHCCCcE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPA----GGADL-GYDVSN------YVDVDPLFG-DMHDFEILIEEAHSRGKPK 117 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~----~~~~~-gY~~~d------~~~vd~~~G-t~~~~~~lv~~ah~~Gi~v 117 (136)
|+++-..+.++-.++.|+++|=+.-.... +.... .|...+ ++.+-.++. +.++++.|.+.|++.||.+
T Consensus 13 Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~ 92 (329)
T TIGR03569 13 GSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEF 92 (329)
T ss_pred CcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcE
Confidence 89999999999999999999988764221 11111 122221 111111122 2578999999999999999
Q ss_pred EE
Q psy12953 118 RT 119 (136)
Q Consensus 118 il 119 (136)
+-
T Consensus 93 ~s 94 (329)
T TIGR03569 93 LS 94 (329)
T ss_pred EE
Confidence 98
No 259
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=62.63 E-value=25 Score=31.77 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=31.5
Q ss_pred EcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953 72 IQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFA 128 (136)
Q Consensus 72 l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~ 128 (136)
+.|++.-++ .++| .|+..++++||+-|++.|.+++- .|.+....+
T Consensus 65 ll~l~SLrS~~s~G------------IGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~ 113 (745)
T PLN03236 65 ALPVFSLRSAESVG------------AGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGT 113 (745)
T ss_pred eeccccCCCCCCCC------------cccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCC
Confidence 567776655 3344 45556899999999999999998 455443333
No 260
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=62.60 E-value=7.5 Score=18.76 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=14.6
Q ss_pred HHHHHHhHHHHHHcCCc
Q psy12953 52 MRGITEKLDHFVDLGIE 68 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~ 68 (136)
-+.+..++++++++|++
T Consensus 15 ~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 15 EKKLKPKVEFLKELGFS 31 (31)
T ss_pred HHHhhHHHHHHHHcCCC
Confidence 56788899999999985
No 261
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=62.44 E-value=8.6 Score=24.63 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=22.4
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccC
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPA 78 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~ 78 (136)
.+.+.++.+++.|++.|.+.|++..
T Consensus 46 ~i~~~l~~l~~~g~~~vvvvPl~~~ 70 (101)
T cd03409 46 DTEEAIRELAEEGYQRVVIVPLAPV 70 (101)
T ss_pred CHHHHHHHHHHcCCCeEEEEeCccc
Confidence 5677888999999999999999977
No 262
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=62.26 E-value=7.9 Score=25.82 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=21.9
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCC
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAG 79 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~ 79 (136)
++.+.++.+.+.|++.|++.|++-..
T Consensus 43 ~i~~~l~~l~~~G~~~i~lvPl~L~~ 68 (103)
T cd03413 43 GLDDVLAKLKKAGIKKVTLMPLMLVA 68 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEehhhee
Confidence 46667778999999999999998764
No 263
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=61.75 E-value=42 Score=28.61 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=36.9
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+..++.++.++++++|.+.+.+.+.... ..-++.|.+.|+..++-++.
T Consensus 238 ~~~~em~~ra~~~~e~G~~~~mv~~~~~G---------------------~~~l~~l~~~~~~~~l~Iha 286 (468)
T PRK04208 238 PTMEEMYKRAEFAKELGSPIVMIDVVTAG---------------------WTALQSLREWCRDNGLALHA 286 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeccccc---------------------cHHHHHHHHhhhcCCcEEEe
Confidence 34899999999999999999999886532 12366666666666777666
No 264
>PRK11627 hypothetical protein; Provisional
Probab=61.74 E-value=8.2 Score=28.85 Aligned_cols=21 Identities=24% Similarity=0.660 Sum_probs=17.1
Q ss_pred ChhHHHHHHHHHHHhhhccCC
Q psy12953 1 MLSRIFLAFLGFLSLVSCQVE 21 (136)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (136)
|++++++.+++++++++|..+
T Consensus 1 mlkklll~l~a~~~L~gCA~~ 21 (192)
T PRK11627 1 MLKKILFPLVALFMLAGCATP 21 (192)
T ss_pred ChHHHHHHHHHHHHHHhhcCC
Confidence 899999888888888888544
No 265
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=61.69 E-value=12 Score=24.87 Aligned_cols=61 Identities=13% Similarity=0.021 Sum_probs=37.0
Q ss_pred HHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 59 LDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 59 l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
...+..+|.....+............-...|..-+=..-|...+..++++.|+++|+++++
T Consensus 32 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 32 AYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIA 92 (139)
T ss_pred HHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEE
Confidence 4567778886666544332211000011223333334456678899999999999999998
No 266
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=61.50 E-value=28 Score=26.22 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.5
Q ss_pred HHHHHhHHHHHHcCCcEEEEcC
Q psy12953 53 RGITEKLDHFVDLGIESLWIQP 74 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~P 74 (136)
..+.+.++.++++|++.|.+.|
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~ 36 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSP 36 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCC
Confidence 4677888899999999999997
No 267
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=61.45 E-value=18 Score=27.21 Aligned_cols=61 Identities=18% Similarity=0.190 Sum_probs=39.9
Q ss_pred HHhHHHHHHcCCcEEEEcCCccC----------CC-CCCCCCccC-CCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPA----------GG-ADLGYDVSN-YVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~----------~~-~~~gY~~~d-~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.|+.+-.-|=.+|.--|-|.+ +. .-...-|.. |...+-++-|..||++| |+++||+|.=
T Consensus 92 ~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~l---c~~~~i~I~~ 164 (193)
T PF07021_consen 92 DEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDL---CRELGIRIEE 164 (193)
T ss_pred HHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHH---HHHCCCEEEE
Confidence 33467777778888888887753 00 000111222 45678889999999988 5577998876
No 268
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=61.44 E-value=63 Score=26.11 Aligned_cols=69 Identities=13% Similarity=0.056 Sum_probs=48.0
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccC------------------CCCCCC----------CCccCCCCCCCCC-CCH
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPA------------------GGADLG----------YDVSNYVDVDPLF-GDM 100 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~------------------~~~~~g----------Y~~~d~~~vd~~~-Gt~ 100 (136)
=++++..+.+..+++.|+..++ -|+... .+.-.+ -...|...+|+.. |+.
T Consensus 200 ~~~~~A~~~~~~l~~~~l~~iE-eP~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGi 278 (368)
T cd03329 200 YSRADALRLGRALEELGFFWYE-DPLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGI 278 (368)
T ss_pred cCHHHHHHHHHHhhhcCCCeEe-CCCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCH
Confidence 4456666777788888887776 455321 111111 1245666778664 999
Q ss_pred HHHHHHHHHHHHCCCcEEE
Q psy12953 101 HDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 101 ~~~~~lv~~ah~~Gi~vil 119 (136)
.+.+++++.|+++|++++.
T Consensus 279 t~~~~ia~~a~~~gi~~~~ 297 (368)
T cd03329 279 TGAMKTAHLAEAFGLDVEL 297 (368)
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 9999999999999999988
No 269
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=61.39 E-value=37 Score=24.26 Aligned_cols=56 Identities=9% Similarity=0.084 Sum_probs=38.6
Q ss_pred HHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 59 LDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 59 l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
...+..+|.++..+...... .-...|.--+=..-|...+..++++.||++|++|+.
T Consensus 49 ~~~l~~~g~~~~~~~~~~~~-----~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 49 AMRLMHLGFNVYVVGETTTP-----SIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred HHHHHhCCCeEEEeCCcccC-----CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 34678899999887654311 111233323334457788999999999999999999
No 270
>PRK04302 triosephosphate isomerase; Provisional
Probab=61.06 E-value=26 Score=26.33 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=30.5
Q ss_pred HHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 59 LDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 59 l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
++.++++|++.|.+.= .+. .-..++.++++++|++.||.+|+
T Consensus 78 ~~~l~~~G~~~vii~~-ser------------------~~~~~e~~~~v~~a~~~Gl~~I~ 119 (223)
T PRK04302 78 PEAVKDAGAVGTLINH-SER------------------RLTLADIEAVVERAKKLGLESVV 119 (223)
T ss_pred HHHHHHcCCCEEEEec-ccc------------------ccCHHHHHHHHHHHHHCCCeEEE
Confidence 6788999999886532 111 01135688999999999999998
No 271
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=61.00 E-value=22 Score=30.33 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=36.2
Q ss_pred HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCC-cEEE
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGK-PKRT 119 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi-~vil 119 (136)
.++++.+++.|++.|.+.+=.-+ ..-+..+ .+-.+.+++.+.++.|++.|+ .|-+
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS~~--------d~vLk~i-gR~ht~e~v~~ai~~ar~~Gf~~In~ 324 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQTMN--------DETLKAI-GRHHTVEDIIEKFHLAREMGFDNINM 324 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCcCC--------HHHHHHh-CCCCCHHHHHHHHHHHHhCCCCeEEE
Confidence 45677888888888887662111 1112233 334678999999999999999 4434
No 272
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=60.93 E-value=43 Score=27.28 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=37.3
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
++-.....+++-+-.-|++.|.+.|+-. +-+...++.|++.||+|+.
T Consensus 65 ~~~~~Q~~qien~i~qg~~vlvi~a~d~-----------------------~~l~~~i~~A~~~gikVia 111 (341)
T COG4213 65 GDEEKQLAQIENMINQGVKVLVIGAIDG-----------------------GVLSNAVEKAKSEGIKVIA 111 (341)
T ss_pred cChhHHHHHHHHHHhcCCCEEEEEeccc-----------------------hhHHHHHHHHHHcCCeEEE
Confidence 4444556667778888999999988642 2588999999999999998
No 273
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=60.92 E-value=34 Score=29.10 Aligned_cols=64 Identities=14% Similarity=0.277 Sum_probs=44.6
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcC----CccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQP----FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREV 123 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~P----i~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~ 123 (136)
..-+....+-++-+++||+++.-++= |++.+.. + .+.--..+=..+|+++|+++||+.++ .+|-
T Consensus 55 ~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~--~---------e~N~~gl~fY~~l~del~~~gIep~vTL~Hf 123 (460)
T COG2723 55 SDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDG--G---------EVNEKGLRFYDRLFDELKARGIEPFVTLYHF 123 (460)
T ss_pred cchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCC--C---------CcCHHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 44477778889999999999988753 4433221 0 11112244589999999999999999 6664
No 274
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=60.77 E-value=1e+02 Score=27.16 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHCCCcEEE-eccCCCc
Q psy12953 100 MHDFEILIEEAHSRGKPKRT-FREVTKS 126 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil-~nh~~~~ 126 (136)
.+.|+.+|+.|+++|+.+-+ .||-|.+
T Consensus 144 ~e~~~~vV~~ake~~~~IRIGvN~GSL~ 171 (606)
T PRK00694 144 EEKFSPLVEKCKRLGKAMRIGVNHGSLS 171 (606)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCcCch
Confidence 57899999999999999999 8998764
No 275
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=60.71 E-value=7.5 Score=30.70 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=33.7
Q ss_pred CCCHHHHHHhHHHHHH--cCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 49 TGDMRGITEKLDHFVD--LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~--lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.=+.+++.+.+..... --...|+|.-..+... | .+ =++++++++.+.||++||+|.+
T Consensus 105 ~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~G---G-~~----------~s~~el~ai~~~a~~~gl~lhm 163 (290)
T PF01212_consen 105 KLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAG---G-TV----------YSLEELRAISELAREHGLPLHM 163 (290)
T ss_dssp BB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTT---S-B-------------HHHHHHHHHHHHHHT-EEEE
T ss_pred CCCHHHHHHHhhhccccCCCccEEEEEecCcCCC---C-ee----------CCHHHHHHHHHHHHhCceEEEE
Confidence 3566777764443333 2245566655554311 1 00 0368999999999999999999
No 276
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.68 E-value=44 Score=25.82 Aligned_cols=50 Identities=4% Similarity=0.023 Sum_probs=33.8
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCc
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKP 116 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~ 116 (136)
++.+.+++++++|++++.|.. .+|. .| ....-+.++.+++.+++.++++.
T Consensus 12 ~~~~a~~~~~~~G~~~~qif~--~~P~-~w----------~~~~~~~~~~~~~~~~~~~~~~~ 61 (274)
T TIGR00587 12 GLQAAYNRAAEIGATAFMFFL--KSPR-WW----------RRPMLEEEVIDWFKAALETNKNL 61 (274)
T ss_pred CHHHHHHHHHHhCCCEEEEEe--cCcc-cc----------CCCCCCHHHHHHHHHHHHHcCCC
Confidence 567788899999999999932 1121 11 13333456677777778888887
No 277
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=60.66 E-value=11 Score=30.42 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=43.2
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCC---HHHHHHHHHHHHHCCCcEEE-eccCCCcc
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGD---MHDFEILIEEAHSRGKPKRT-FREVTKSF 127 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt---~~~~~~lv~~ah~~Gi~vil-~nh~~~~~ 127 (136)
...+.....++=|+.-|..-...-++... ++ .-.+..-+ .+.++++++++|++|-++++ .+|.+...
T Consensus 37 ~~~~yy~~rA~GG~Glii~~~~~v~~~~~-~~------~~~~~i~~d~~i~~~k~l~~~vh~~Ga~i~~QL~H~G~~~ 107 (341)
T PF00724_consen 37 RLIAYYERRAKGGAGLIITEATAVSPEGR-GF------PGQPGIWDDEQIPGLKKLADAVHAHGAKIIAQLWHAGRQA 107 (341)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEESSGGGS-SS------TTSEBSSSHHHHHHHHHHHHHHHHTTSEEEEEEE--GGGS
T ss_pred HHHHHHHHHhhcCCceEEecccccccccc-cc------cccchhchhhHHHHHHHHHHHHHhcCccceeecccccccc
Confidence 56666667777788888876665554321 10 11111222 46899999999999999999 88876543
No 278
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=60.58 E-value=44 Score=26.74 Aligned_cols=62 Identities=16% Similarity=0.129 Sum_probs=46.8
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+.+..++.+.++.|++.|++-|-|.--..... -.-.=.+|=++++|+++-+.|.++|..-+.
T Consensus 224 GEt~~Ev~e~m~DLr~~gvdilTiGQYlqPS~---------~HlpV~ryv~PeeF~~~~~~a~~~GF~~v~ 285 (306)
T COG0320 224 GETDEEVIEVMDDLRSAGVDILTIGQYLQPSR---------KHLPVQRYVTPEEFDELEEVAEEMGFLHVA 285 (306)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEeccccCCcc---------ccCCceeccCHHHHHHHHHHHHHccchhhc
Confidence 57788999999999999999998765443211 112224567899999999999999986554
No 279
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=60.57 E-value=29 Score=26.88 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHCCCcEEE
Q psy12953 100 MHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil 119 (136)
.++++++++.||+.|+.+++
T Consensus 146 ~~~l~~li~~a~~lGl~~lv 165 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLV 165 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEE
Confidence 47899999999999999998
No 280
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=60.39 E-value=29 Score=22.95 Aligned_cols=59 Identities=14% Similarity=-0.061 Sum_probs=34.8
Q ss_pred HHHHHcC-CcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 60 DHFVDLG-IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 60 ~~l~~lG-~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.++..+| +......+ .+.......-...|..-+=..=|...+..+.++.|+++|.+|+.
T Consensus 19 ~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 19 YLLERLAGIPVEVEAA-SEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred HHHHHhcCCceEEEeh-hHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEE
Confidence 4666676 66665542 21111000111233323334457778999999999999999998
No 281
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=60.33 E-value=64 Score=26.17 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=25.7
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPA 78 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~ 78 (136)
-+.+.+.+.+.++.++|+.+|.|-|+-+.
T Consensus 58 ~s~d~l~~~~~~~~~lGi~av~LFgvp~~ 86 (330)
T COG0113 58 YSLDRLVEEAEELVDLGIPAVILFGVPDD 86 (330)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 45788899999999999999999999854
No 282
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=60.14 E-value=60 Score=26.54 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHCCCcEEE--eccCC
Q psy12953 100 MHDFEILIEEAHSRGKPKRT--FREVT 124 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil--~nh~~ 124 (136)
.+++.++++.++++|+.|-+ ++..+
T Consensus 214 ~~Ei~~li~~a~~~gi~vr~ie~mP~~ 240 (373)
T PLN02951 214 DDEICDFVELTRDKPINVRFIEFMPFD 240 (373)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCC
Confidence 46788999999998887765 44444
No 283
>PRK14017 galactonate dehydratase; Provisional
Probab=60.08 E-value=52 Score=26.76 Aligned_cols=68 Identities=9% Similarity=0.014 Sum_probs=45.8
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccC------------------CCCCCC---------CCccCCCCCCCC-CCCHHH
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPA------------------GGADLG---------YDVSNYVDVDPL-FGDMHD 102 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~------------------~~~~~g---------Y~~~d~~~vd~~-~Gt~~~ 102 (136)
+.++..+.++.++++|+..|. -|+... .+.-.+ ....|...+|+. .|+..+
T Consensus 189 ~~~~A~~~~~~l~~~~~~~iE-eP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~ 267 (382)
T PRK14017 189 HKPMAKVLAKELEPYRPMFIE-EPVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITE 267 (382)
T ss_pred CHHHHHHHHHhhcccCCCeEE-CCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHH
Confidence 345555666677778888777 455321 011000 124566667754 699999
Q ss_pred HHHHHHHHHHCCCcEEE
Q psy12953 103 FEILIEEAHSRGKPKRT 119 (136)
Q Consensus 103 ~~~lv~~ah~~Gi~vil 119 (136)
.+++.+.|+++||+++.
T Consensus 268 ~~~ia~~A~~~gi~~~~ 284 (382)
T PRK14017 268 CRKIAAMAEAYDVALAP 284 (382)
T ss_pred HHHHHHHHHHcCCeEee
Confidence 99999999999999998
No 284
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=59.99 E-value=22 Score=27.32 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=36.6
Q ss_pred HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC-CHHHHHHHHHHHHHCCCcEEE
Q psy12953 52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG-DMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G-t~~~~~~lv~~ah~~Gi~vil 119 (136)
++.+.+.++..+++|++.|.+.+- ...+... .++.+- ..+.++++++.|.++|+++.+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~------~~~~~~~----~~~~~~~~~~~l~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY------DVYYEEH----DEETRRRFREGLKEAVELAARAQVTLAV 151 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc------ccccCcC----CHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 445677788999999999976320 0011000 011111 125688999999999999999
No 285
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=59.95 E-value=48 Score=25.92 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=41.5
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.-+...+.+....||++|+..+. .-.++..+. +| +|.- +| .+.++.|.+.+++.||.++.
T Consensus 37 ie~~~~~~~~A~~lk~~g~~~~r-~~~~kpRTs--~~---s~~G----~g-~~gl~~l~~~~~~~Gl~~~t 96 (266)
T PRK13398 37 VESEEQMVKVAEKLKELGVHMLR-GGAFKPRTS--PY---SFQG----LG-EEGLKILKEVGDKYNLPVVT 96 (266)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEE-EeeecCCCC--CC---ccCC----cH-HHHHHHHHHHHHHcCCCEEE
Confidence 45677788888899999998443 344442211 11 2211 12 78899999999999999998
No 286
>PLN02757 sirohydrochlorine ferrochelatase
Probab=59.89 E-value=35 Score=24.44 Aligned_cols=27 Identities=22% Similarity=0.566 Sum_probs=22.4
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCC
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGG 80 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~ 80 (136)
.+.+.++.+.+.|++.|.+.|.|-.+.
T Consensus 59 sl~eal~~l~~~g~~~vvVvP~FL~~G 85 (154)
T PLN02757 59 SIKDAFGRCVEQGASRVIVSPFFLSPG 85 (154)
T ss_pred CHHHHHHHHHHCCCCEEEEEEhhhcCC
Confidence 567777788889999999999987653
No 287
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=59.84 E-value=21 Score=24.74 Aligned_cols=55 Identities=13% Similarity=0.040 Sum_probs=33.2
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+.++.+++.|+..|.++-=... ...+..+...-++.++..+.++.+++.|+.+..
T Consensus 89 ~~~~~l~~~g~~~i~i~le~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 143 (204)
T cd01335 89 ELLKELKELGLDGVGVSLDSGD--------EEVADKIRGSGESFKERLEALKELREAGLGLST 143 (204)
T ss_pred HHHHHHHhCCCceEEEEcccCC--------HHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceE
Confidence 4455666666666655431111 111222223455778999999999999888777
No 288
>PRK13753 dihydropteroate synthase; Provisional
Probab=59.69 E-value=75 Score=25.20 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=45.3
Q ss_pred EEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHH---HHHHH
Q psy12953 33 MYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFE---ILIEE 109 (136)
Q Consensus 33 iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~---~lv~~ 109 (136)
|-.+-|++|+|+.. .-+.+...++..++-+.|.+-|=+..-...|.. . .....+|++ ..|++
T Consensus 7 IlNvTPDSFsDGg~--~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga----~---------~vs~eeE~~Rv~pvI~~ 71 (279)
T PRK13753 7 ILNLTEDSFFDESR--RLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDA----R---------PVSPADEIRRIAPLLDA 71 (279)
T ss_pred EEeCCCCCCCCCCC--CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCC----C---------cCCHHHHHHHHHHHHHH
Confidence 44567999987622 124578888888999999999999775443321 1 112234555 66666
Q ss_pred HHHCCCcEEE
Q psy12953 110 AHSRGKPKRT 119 (136)
Q Consensus 110 ah~~Gi~vil 119 (136)
+.+.++.|-+
T Consensus 72 l~~~~~~ISI 81 (279)
T PRK13753 72 LSDQMHRVSI 81 (279)
T ss_pred HHhCCCcEEE
Confidence 6666554444
No 289
>TIGR03854 F420_MSMEG_3544 probable F420-dependent oxidoreductase, MSMEG_3544 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a small family, closely related to other such families in the putative F420-binding region, exemplified by MSMEG_3544 in Mycobacterium smegmatis.
Probab=59.40 E-value=13 Score=29.28 Aligned_cols=26 Identities=19% Similarity=0.506 Sum_probs=24.0
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcC
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQP 74 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~P 74 (136)
.|+.+++.++|..++++|++++.+.|
T Consensus 243 ~g~~~~v~~~l~~~~~aG~~~~~l~~ 268 (290)
T TIGR03854 243 AVGWAQLHRRIDAYLDAGLTKFVIRP 268 (290)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEcC
Confidence 57789999999999999999999987
No 290
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=59.27 E-value=13 Score=29.82 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=42.0
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCc---cCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCCCc
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDV---SNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVTKS 126 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~---~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~~~ 126 (136)
..+.+.....+.-|+.-|..-...-++.. .+ .+ .....-+. ...+.++++++++|++|-++++ .+|.+..
T Consensus 35 ~~~~~~y~~rA~gG~glii~~~~~v~~~~-~~-~~~~~~~~~~~~d--~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~ 108 (338)
T cd04733 35 PELIRLYRRWAEGGIGLIITGNVMVDPRH-LE-EPGIIGNVVLESG--EDLEAFREWAAAAKANGALIWAQLNHPGRQ 108 (338)
T ss_pred HHHHHHHHHHhCCCceEEEEeeEEECccc-cc-CCCcCCCcccCCH--HHHHHHHHHHHHHHhcCCEEEEEccCCCcC
Confidence 34455555566668888877655444321 11 01 00000011 1256899999999999999999 8897664
No 291
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=59.21 E-value=40 Score=25.83 Aligned_cols=27 Identities=7% Similarity=0.366 Sum_probs=24.4
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCc
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFY 76 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~ 76 (136)
..+++.+++....++.|.+.|++.++.
T Consensus 157 ~~~~eai~Ra~ay~~AGAD~v~v~~~~ 183 (243)
T cd00377 157 EGLDEAIERAKAYAEAGADGIFVEGLK 183 (243)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 468999999999999999999998875
No 292
>PRK09028 cystathionine beta-lyase; Provisional
Probab=59.14 E-value=15 Score=30.33 Aligned_cols=28 Identities=14% Similarity=-0.024 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953 97 FGDMHDFEILIEEAHSRGKPKRTFREVT 124 (136)
Q Consensus 97 ~Gt~~~~~~lv~~ah~~Gi~vil~nh~~ 124 (136)
.|...+++++++.||++|+.++++|-.+
T Consensus 159 tg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 159 TMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 4778999999999999999999966543
No 293
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=59.01 E-value=43 Score=26.56 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=35.0
Q ss_pred HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCc-EEE
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKP-KRT 119 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~-vil 119 (136)
.+.++.+++.|++.|.++- .+....-|..+...-|+.++..+-++.+.+.|+. |-+
T Consensus 102 ~~~~~~L~~~gl~~v~ISl--------d~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~i 158 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSL--------DSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKL 158 (334)
T ss_pred HHHHHHHHHcCCCeEEEec--------ccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 3456677777777666543 1112222333333346789999999999999997 554
No 294
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=58.98 E-value=27 Score=27.05 Aligned_cols=65 Identities=9% Similarity=0.062 Sum_probs=38.2
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCcc--CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccCC
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVS--NYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFAN 129 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~--d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~~ 129 (136)
+-.+-.+.|.+.|. +.+.=..+.+..- +.+. .-...-.++|+.+++++++ +++||+.++ +.+||-
T Consensus 11 E~r~la~~L~~~g~--v~~sv~t~~g~~~--~~~~~~~~~v~~G~lg~~~~l~~~l---~~~~i~~vI----DATHPf 77 (249)
T PF02571_consen 11 EGRKLAERLAEAGY--VIVSVATSYGGEL--LKPELPGLEVRVGRLGDEEGLAEFL---RENGIDAVI----DATHPF 77 (249)
T ss_pred HHHHHHHHHHhcCC--EEEEEEhhhhHhh--hccccCCceEEECCCCCHHHHHHHH---HhCCCcEEE----ECCCch
Confidence 34455678999998 5555455443211 1111 1123445667677777665 789999999 555553
No 295
>PLN02411 12-oxophytodienoate reductase
Probab=58.98 E-value=13 Score=30.69 Aligned_cols=27 Identities=11% Similarity=0.336 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHCCCcEEE-eccCCCc
Q psy12953 100 MHDFEILIEEAHSRGKPKRT-FREVTKS 126 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil-~nh~~~~ 126 (136)
.+.+++|++++|++|-++++ .+|.+..
T Consensus 86 i~~~~~l~~avH~~G~~i~~QL~H~Gr~ 113 (391)
T PLN02411 86 VEAWKKVVDAVHAKGSIIFCQLWHVGRA 113 (391)
T ss_pred HHHHHHHHHHHHhcCCEEEEeccCCCCC
Confidence 46799999999999999999 8887763
No 296
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=58.96 E-value=41 Score=26.53 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=29.7
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.|+.+.+.++++.|++.|.+.-+- .++=.++.+.|.++||..+.
T Consensus 109 ~Gie~F~~~~~~~GvdGlivpDLP-----------------------~ee~~~~~~~~~~~gi~~I~ 152 (265)
T COG0159 109 YGIEKFLRRAKEAGVDGLLVPDLP-----------------------PEESDELLKAAEKHGIDPIF 152 (265)
T ss_pred hhHHHHHHHHHHcCCCEEEeCCCC-----------------------hHHHHHHHHHHHHcCCcEEE
Confidence 456666777777777777764321 23445677788899998888
No 297
>TIGR03565 alk_sulf_monoox alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes.
Probab=58.77 E-value=14 Score=29.79 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=24.9
Q ss_pred CCCCHHHHHHhHHHHHHcCCcEEEEcC
Q psy12953 48 GTGDMRGITEKLDHFVDLGIESLWIQP 74 (136)
Q Consensus 48 ~~g~~~~l~~~l~~l~~lG~~~I~l~P 74 (136)
-.|+.+++.++|..++++|++.+.|.+
T Consensus 302 lVGtpe~Va~~l~~~~~~Gv~~~~L~~ 328 (346)
T TIGR03565 302 LVGDPETVAARIREYQDLGIDTFILSG 328 (346)
T ss_pred eeCCHHHHHHHHHHHHHcCCcEEEecC
Confidence 369999999999999999999999984
No 298
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=58.71 E-value=26 Score=27.47 Aligned_cols=61 Identities=8% Similarity=0.138 Sum_probs=40.6
Q ss_pred HHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 59 LDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 59 l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
-..|..+|..+..+.+..............|..-+=+.-|...+..+.++.|+++|++++.
T Consensus 61 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~ 121 (321)
T PRK11543 61 AATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLA 121 (321)
T ss_pred HHHHHcCCCceeecChHHHhhCCcCccCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEE
Confidence 3467779999998876432211111122333333334457789999999999999999999
No 299
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=58.71 E-value=18 Score=30.35 Aligned_cols=93 Identities=17% Similarity=0.252 Sum_probs=51.5
Q ss_pred ccccCCceEEEEecccccCcCCCCCCCHHHHHHhHH--HHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHH
Q psy12953 25 KEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLD--HFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHD 102 (136)
Q Consensus 25 ~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~--~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~ 102 (136)
.+-..+.+.|.|-- -|... -..+|....+.+. +++-=|+.-..|+==+.+..-+++ --||-.+++|.|..+|
T Consensus 23 ~e~v~~~v~~rI~~-nf~sq---a~~PFl~tlD~vKkv~l~TDGlgQ~vllKGY~~EGHDS~--hpdy~~~~~R~GG~~D 96 (425)
T PF12905_consen 23 SEEVPDLVVYRIAM-NFGSQ---AQNPFLRTLDNVKKVSLATDGLGQSVLLKGYQSEGHDSA--HPDYGNINKRAGGAED 96 (425)
T ss_dssp GGGGGGEEEEEEEE---TT-----SS-HHHHHHHHHHHHHHHTS-EEEEEEET-BTTSTTSS--TT-TT-B-GGGTHHHH
T ss_pred ccccccceEEEecc-chhhc---ccChHHHHHHHHHHHhhhcCCccceEEEeecccCCccCC--CcchhhhccccccHHH
Confidence 34456667776532 12100 0134555554444 334445555555443444332232 5577789999999999
Q ss_pred HHHHHHHHHHCCCcEEEeccCCC
Q psy12953 103 FEILIEEAHSRGKPKRTFREVTK 125 (136)
Q Consensus 103 ~~~lv~~ah~~Gi~vil~nh~~~ 125 (136)
|+.|+++.|+.|-++=+ |+..
T Consensus 97 ~~~L~~~g~~yna~~Gv--HVNa 117 (425)
T PF12905_consen 97 FNTLLEEGRKYNAKFGV--HVNA 117 (425)
T ss_dssp HHHHHHHHHTTTEEEEE--EEES
T ss_pred HHHHHHHHHhhCCeEEE--EEcc
Confidence 99999999999998888 5443
No 300
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=58.69 E-value=43 Score=26.99 Aligned_cols=69 Identities=7% Similarity=0.040 Sum_probs=43.5
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCCC
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVTK 125 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~~ 125 (136)
+...+.....++-|+.-|+.-..+-.+.. .++ +... .++.. .-.+.++++++++|++|=++++ .+|.+.
T Consensus 33 ~~~~~~y~~rA~gG~glii~~~~~v~~~~-~~~-~~~~-~~~~~-~~i~~~~~l~~~vh~~g~~~~~QL~h~G~ 102 (353)
T cd02930 33 DRLAAFYAERARGGVGLIVTGGFAPNEAG-KLG-PGGP-VLNSP-RQAAGHRLITDAVHAEGGKIALQILHAGR 102 (353)
T ss_pred HHHHHHHHHHhcCCceEEEEeeEEeCCcc-cCC-CCCc-ccCCH-HHHHHHHHHHHHHHHcCCEEEeeccCCCC
Confidence 45555566666678888887765554331 121 1100 01110 2357899999999999999999 888766
No 301
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=58.58 E-value=52 Score=23.28 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=41.7
Q ss_pred HHHHHHhHHHHHHcCCcEEEEcCCc--cCCCCCCCCCccCCCCCCCCCC-CHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953 52 MRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFG-DMHDFEILIEEAHSRGKPKRTFREVT 124 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l~Pi~--~~~~~~~gY~~~d~~~vd~~~G-t~~~~~~lv~~ah~~Gi~vil~nh~~ 124 (136)
.+.+.+.++..+.+|+..|.+.|-- ..... ..+..+- ..+.|+++++.|.++|+++.+=||..
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~----------~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPED----------DTEENWERLAENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTS----------SHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCC----------CHHHHHHHHHHHHHHHHhhhhhhcceEEEecccC
Confidence 6778888999999999999998652 01000 0000000 02469999999999999999944443
No 302
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=58.45 E-value=81 Score=24.13 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=49.1
Q ss_pred CCHHHHHHhHHHHHHcCCcEEE-EcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE--eccCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLW-IQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT--FREVT 124 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~-l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil--~nh~~ 124 (136)
.+++.+.+..++|.+.||-..+ .-|.+..+.. ++ +-++....+|.+.++.+.++|=.|++ +.|..
T Consensus 13 ~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~--~~--------~~~l~~~~~f~~~L~~~~~~Gg~I~lHGYtHq~ 80 (243)
T PF10096_consen 13 SDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNG--GI--------TVNLSDNPEFVEYLRYLQARGGEIVLHGYTHQY 80 (243)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEecccCCCC--cc--------cccchhhHHHHHHHHHHHhcCCEEEEEecceec
Confidence 5788888999999999998543 4666665532 21 44455567899999999999999999 66665
No 303
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=58.32 E-value=80 Score=24.08 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=41.7
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..+...+.+.+++..+.|++.|-++=-+..+ .+. -...+.|++.++.|.++|+-|+.
T Consensus 85 ~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~---------~~~-----~~~~~~l~~ai~~A~~~Gilvva 141 (247)
T cd07491 85 SITPQSAAKAIEAAVEKKVDIISMSWTIKKP---------EDN-----DNDINELENAIKEALDRGILLFC 141 (247)
T ss_pred ccCHHHHHHHHHHHHHCCCcEEEeeeecccc---------ccc-----ccchHHHHHHHHHHHhCCeEEEE
Confidence 3567789999999999999988876211111 000 12357899999999999998888
No 304
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=58.26 E-value=24 Score=27.55 Aligned_cols=40 Identities=20% Similarity=0.171 Sum_probs=27.5
Q ss_pred HHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 59 LDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 59 l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+..-+.+|.++|.|.--.- +.+++++|++.||+.||.+++
T Consensus 124 I~eA~~~GADaVLLI~~~L---------------------~~~~l~~l~~~a~~lGle~lV 163 (254)
T PF00218_consen 124 IYEARAAGADAVLLIAAIL---------------------SDDQLEELLELAHSLGLEALV 163 (254)
T ss_dssp HHHHHHTT-SEEEEEGGGS---------------------GHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHcCCCEeehhHHhC---------------------CHHHHHHHHHHHHHcCCCeEE
Confidence 3356667788777643211 146799999999999999998
No 305
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=58.24 E-value=15 Score=29.24 Aligned_cols=25 Identities=16% Similarity=0.499 Sum_probs=23.4
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEc
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQ 73 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~ 73 (136)
.|+.+++.++|..++++|++.|.+.
T Consensus 282 ~Gtpe~v~~~l~~~~~aGvd~v~l~ 306 (325)
T PRK02271 282 AGTPEDVVEKIEALLEMGVTQIVAG 306 (325)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEec
Confidence 5999999999999999999999995
No 306
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=58.21 E-value=59 Score=25.93 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHhHHHHHHcCCcE-EEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 46 GDGTGDMRGITEKLDHFVDLGIES-LWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 46 ~~~~g~~~~l~~~l~~l~~lG~~~-I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+.+..+..+-.+.+..+++.|+.+ |.+.||.+.-. .+++.+++.+|.+.|...+.
T Consensus 162 EP~apsp~~Ri~al~~l~eaGi~~~v~v~PIiP~~~-------------------d~e~e~~l~~~~~ag~~~v~ 217 (297)
T COG1533 162 EPRAPSPEERLEALKELSEAGIPVGLFVAPIIPGLN-------------------DEELERILEAAAEAGARVVV 217 (297)
T ss_pred CCCCcCHHHHHHHHHHHHHCCCeEEEEEecccCCCC-------------------hHHHHHHHHHHHHcCCCeeE
Confidence 455677788888899999999975 78899986531 27899999999999998876
No 307
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=58.15 E-value=57 Score=27.17 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=41.5
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCC--CCCCHHHHHHHHHHH-HHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDP--LFGDMHDFEILIEEA-HSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~--~~Gt~~~~~~lv~~a-h~~Gi~vil 119 (136)
+-..+.+-++.++++|++.|.|+|....+. .+| ..+...+-+ .--+.+++.+++++. ++.|+++.-
T Consensus 181 D~eel~~ti~~L~~lg~~~V~L~~y~~~g~--~ky-~lg~~~~~~~~~~~~~~e~~~~v~~~~~~~~i~~~g 249 (404)
T TIGR03278 181 DGDVLWKTCADLESWGAKALILMRFANTEE--QGL-ILGNAPIIPGIKPHTVSEFKNIVRETHKEFPIRVTG 249 (404)
T ss_pred CcHHHHHHHHHHHHCCCCEEEEEecccccc--ccc-ccCCcCcccCCCCCCHHHHHHHHHHHHHHhCCcccC
Confidence 335666778899999999999999886543 234 222222111 122677888886554 455767655
No 308
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=58.02 E-value=60 Score=27.54 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=36.7
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
++..++.++.+++++.|.+++.+. +.. + | ..++.|.+.|...|+-|+.
T Consensus 223 ~~~~em~~ra~~a~~~G~~~~mv~-~~~-G-----~---------------~~l~~l~~~a~~~~l~Iha 270 (450)
T cd08212 223 GTMEEMYKRAEFAKELGSPIIMHD-LLT-G-----F---------------TAIQSLAKWCRDNGMLLHL 270 (450)
T ss_pred CCHHHHHHHHHHHHHhCCCeEeee-ccc-c-----c---------------chHHHHHHHhhhcCceEEe
Confidence 668999999999999999998887 332 2 1 2377777777667887777
No 309
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=57.94 E-value=7.8 Score=29.31 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=31.3
Q ss_pred HhHHHHHHcCCcEEEEcCCc---cCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 57 EKLDHFVDLGIESLWIQPFY---PAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~---~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
...+...++|.+.|-+...+ .+.. + + -..+++++++++||+.||++|+
T Consensus 80 ~~ve~A~~~GAd~vd~vi~~~~~~~~~--~-----~--------~~~~~i~~v~~~~~~~gl~vIl 130 (236)
T PF01791_consen 80 AEVEEAIRLGADEVDVVINYGALGSGN--E-----D--------EVIEEIAAVVEECHKYGLKVIL 130 (236)
T ss_dssp HHHHHHHHTT-SEEEEEEEHHHHHTTH--H-----H--------HHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHHcCCceeeeecccccccccc--H-----H--------HHHHHHHHHHHHHhcCCcEEEE
Confidence 44556666777776665544 1111 0 0 0146899999999999999999
No 310
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=57.88 E-value=53 Score=24.29 Aligned_cols=47 Identities=17% Similarity=0.378 Sum_probs=35.6
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
++.+...+.++.+.+.++++|.+.|.... ...++++.+.++|+.+++
T Consensus 40 ~~~~~~~~~i~~l~~~~vdgiii~~~~~~-----------------------~~~~~~~~l~~~~iPvv~ 86 (272)
T cd06301 40 NDVATQLSQVENFIAQGVDAIIVVPVDTA-----------------------ATAPIVKAANAAGIPLVY 86 (272)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCchh-----------------------hhHHHHHHHHHCCCeEEE
Confidence 45567777788888889999998875421 245677888999999988
No 311
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=57.83 E-value=31 Score=27.91 Aligned_cols=54 Identities=13% Similarity=-0.039 Sum_probs=31.0
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCc-EEE
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKP-KRT 119 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~-vil 119 (136)
+.++.++++|++.|.+..=.-+ ..-...++ +-.+.++..+.++.+++.|+. |.+
T Consensus 109 e~l~~l~~~G~~rvslGvQS~~--------~~~L~~l~-R~~s~~~~~~a~~~l~~~g~~~v~~ 163 (375)
T PRK05628 109 EFFAALRAAGFTRVSLGMQSAA--------PHVLAVLD-RTHTPGRAVAAAREARAAGFEHVNL 163 (375)
T ss_pred HHHHHHHHcCCCEEEEecccCC--------HHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 4556666677776666431100 11111222 335677888888888888887 544
No 312
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=57.72 E-value=17 Score=27.27 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=38.3
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.++......++...++|++.|.+.--..... .--..++++++++.||+.|+++++
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~---------------~~~~~~~i~~v~~~~~~~g~~~ii 127 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGSEE---------------EREMLEELARVAAEAHKYGLPLIA 127 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCCch---------------HHHHHHHHHHHHHHHHHcCCCEEE
Confidence 4556666778899999999885543222110 001235899999999999999998
No 313
>TIGR03620 F420_MSMEG_4141 probable F420-dependent oxidoreductase, MSMEG_4141 family. Members of this protein family, related to F420-dependent oxidoreductases within the larger family of a bacterial luciferase (an FMN-dependent enzyme), occurs only within the small subset of species that synthesize F420. Most such proteins are from members of the Actinobacteria, but at least one species, Sphingomonas wittichii, belongs to the Alphaproteobacteria.
Probab=57.52 E-value=13 Score=29.14 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=25.8
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCc
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFY 76 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~ 76 (136)
.||..++.++|..++++|++++.+.|.-
T Consensus 233 ~Gtp~ev~e~l~~~~~aGvd~l~l~~~~ 260 (278)
T TIGR03620 233 WGDADTVAARVREHLDAGADHVAVQVLT 260 (278)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 5999999999999999999999999953
No 314
>PRK05967 cystathionine beta-lyase; Provisional
Probab=57.34 E-value=16 Score=30.20 Aligned_cols=28 Identities=21% Similarity=0.113 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEeccC
Q psy12953 96 LFGDMHDFEILIEEAHSRGKPKRTFREV 123 (136)
Q Consensus 96 ~~Gt~~~~~~lv~~ah~~Gi~vil~nh~ 123 (136)
..++..+++++++.||++|+.++++|-.
T Consensus 161 P~l~v~dl~~I~~la~~~g~~vvVD~t~ 188 (395)
T PRK05967 161 NTFEMQDIPAIAEAAHRHGAIVMMDNTW 188 (395)
T ss_pred CCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence 3678899999999999999999996654
No 315
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=57.27 E-value=15 Score=24.74 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHCCCcEEEeccC
Q psy12953 101 HDFEILIEEAHSRGKPKRTFREV 123 (136)
Q Consensus 101 ~~~~~lv~~ah~~Gi~vil~nh~ 123 (136)
.++++++..|+++|+.|....++
T Consensus 67 pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 67 PDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred ccHHHHHHHHHHcCCcEEEeCCC
Confidence 58999999999999999984443
No 316
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=57.26 E-value=55 Score=26.84 Aligned_cols=68 Identities=7% Similarity=-0.016 Sum_probs=40.4
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC---CHHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG---DMHDFEILIEEAHSRGKPKRT-FREV 123 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G---t~~~~~~lv~~ah~~Gi~vil-~nh~ 123 (136)
+...+.....++-|+.-|+.-....++.. .++...+. ....+- -.+.|+++++++|++|-++++ .+|.
T Consensus 35 ~~~~~yy~~rA~gG~GlIi~~~~~v~~~~-~~~~~~~~--~~~~~~~~~~i~~~k~l~davh~~G~~i~~QL~H~ 106 (382)
T cd02931 35 QRGIDYYVERAKGGTGLIITGVTMVDNEI-EQFPMPSL--PCPTYNPTAFIRTAKEMTERVHAYGTKIFLQLTAG 106 (382)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEEEeCCcc-cccCCCCc--cccccCCHHHhHHHHHHHHHHHHcCCEEEEEccCc
Confidence 34555555666678888877654443321 11100000 011111 146799999999999999999 8885
No 317
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=57.23 E-value=23 Score=29.42 Aligned_cols=53 Identities=21% Similarity=0.105 Sum_probs=29.8
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEE
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKR 118 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vi 118 (136)
+.++.++++|++.|.+.-=.-+ ......+.-. -+.++..+.++.+++.|+.++
T Consensus 142 e~l~~l~~~G~~rvslGvQS~~--------~~~L~~l~R~-~~~~~~~~ai~~l~~~g~~~i 194 (430)
T PRK08208 142 EKLALLAARGVNRLSIGVQSFH--------DSELHALHRP-QKRADVHQALEWIRAAGFPIL 194 (430)
T ss_pred HHHHHHHHcCCCEEEEecccCC--------HHHHHHhCCC-CCHHHHHHHHHHHHHcCCCeE
Confidence 5566777777777766431100 1111122222 256778888888888888753
No 318
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=57.20 E-value=36 Score=25.72 Aligned_cols=61 Identities=13% Similarity=0.068 Sum_probs=44.8
Q ss_pred HHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 59 LDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 59 l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.-.|..+|..+.++.|--.....-.-..+.|-.-.=+.=|.-+++..++..|++.|++|+.
T Consensus 58 Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~lia 118 (202)
T COG0794 58 AARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLIA 118 (202)
T ss_pred HHHHHccCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEEE
Confidence 3589999999999998644332212233444444445557789999999999999999998
No 319
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=56.89 E-value=60 Score=25.22 Aligned_cols=56 Identities=20% Similarity=0.225 Sum_probs=42.0
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFR 121 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~n 121 (136)
+.++...++.-+.+.|-|=-...- .++|.++. +..+.++..++.+|+.||+|-||-
T Consensus 77 em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~---------~~~~~l~~~i~~L~~~gIrVSLFi 133 (239)
T PRK05265 77 EMLDIALEVKPHQVTLVPEKREELTTEGGLDVA---------GQFDKLKPAIARLKDAGIRVSLFI 133 (239)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCccCCccchhh---------cCHHHHHHHHHHHHHCCCEEEEEe
Confidence 456677788889999999655543 45565553 335789999999999999999944
No 320
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=56.71 E-value=38 Score=25.84 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=35.6
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFR 121 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~n 121 (136)
+-....+.++.+.+.|+++|.+.|.. .+.+...++++++.||.|++++
T Consensus 41 d~~~q~~~i~~l~~~~vdgiIi~~~~-----------------------~~~~~~~l~~~~~~giPvV~~~ 88 (302)
T TIGR02637 41 TAEGQIEVVNSLIAQKVDAIAISAND-----------------------PDALVPALKKAMKRGIKVVTWD 88 (302)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC-----------------------hHHHHHHHHHHHHCCCEEEEeC
Confidence 34556677778888888888887742 1346678899999999999844
No 321
>PRK11059 regulatory protein CsrD; Provisional
Probab=56.62 E-value=50 Score=28.68 Aligned_cols=76 Identities=8% Similarity=0.075 Sum_probs=51.2
Q ss_pred CceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCC--------ccCCCCCCCCCC---
Q psy12953 30 TAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYD--------VSNYVDVDPLFG--- 98 (136)
Q Consensus 30 ~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~--------~~d~~~vd~~~G--- 98 (136)
+..+.|+...... .+...+.+.+..|+++||.-.. .-+ +.||. +.||-.+|+.+-
T Consensus 517 ~~l~~Ei~E~~~~-------~~~~~~~~~l~~L~~~G~~iai-ddf------G~g~~s~~~L~~l~~d~iKid~s~v~~i 582 (640)
T PRK11059 517 KRLIFELAEADVC-------QHISRLRPVLRMLRGLGCRLAV-DQA------GLTVVSTSYIKELNVELIKLHPSLVRNI 582 (640)
T ss_pred ceEEEEEechhhh-------cCHHHHHHHHHHHHHCCCEEEE-ECC------CCCcccHHHHHhCCCCEEEECHHHHhhh
Confidence 4577777665544 5677888899999999997543 211 11222 455556665542
Q ss_pred -----CHHHHHHHHHHHHHCCCcEEE
Q psy12953 99 -----DMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 99 -----t~~~~~~lv~~ah~~Gi~vil 119 (136)
...-++.+++.||+.|++|+.
T Consensus 583 ~~~~~~~~~v~sli~~a~~~~i~viA 608 (640)
T PRK11059 583 HKRTENQLFVRSLVGACAGTETQVFA 608 (640)
T ss_pred hcCchhHHHHHHHHHHHHHCCCeEEE
Confidence 223489999999999999999
No 322
>PRK09810 entericidin A; Provisional
Probab=56.50 E-value=13 Score=20.89 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=10.7
Q ss_pred ChhHHHHHHHHHHH-hhhc
Q psy12953 1 MLSRIFLAFLGFLS-LVSC 18 (136)
Q Consensus 1 m~~~~~~~~~~~~~-~~~~ 18 (136)
||+++++.++++++ +++|
T Consensus 1 mMkk~~~l~~~~~~~L~aC 19 (41)
T PRK09810 1 MMKRLIVLVLLASTLLTGC 19 (41)
T ss_pred ChHHHHHHHHHHHHHHhhh
Confidence 77777766554444 4445
No 323
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=56.47 E-value=42 Score=25.99 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=35.6
Q ss_pred HHHHHHhHHHHHHcC--CcEEEEcCCccCCCCCCCCCccC--CCCCCCCCCCHHHHHHHHHHHHHCC
Q psy12953 52 MRGITEKLDHFVDLG--IESLWIQPFYPAGGADLGYDVSN--YVDVDPLFGDMHDFEILIEEAHSRG 114 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG--~~~I~l~Pi~~~~~~~~gY~~~d--~~~vd~~~Gt~~~~~~lv~~ah~~G 114 (136)
..++.+.++.++++| ++.+.++|..+.+.. .|...+ |..-|-.-=+.++++++.+.+.+.|
T Consensus 231 ~~ei~~l~~~~~~~~~~v~~v~l~~~~~~g~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g 295 (295)
T TIGR02494 231 EENIEAIAAFLRKLEPGVDEIDLLPYHRLGEN--KYRQLGREYPDSEIPDPAEEQLLELKEIFESKG 295 (295)
T ss_pred HHHHHHHHHHHHHhccCCceEEecCCCchhHH--HHHHhCCCCccCCCCCCCHHHHHHHHHHHHhcC
Confidence 456666777788888 788888888876531 222111 1111111134677888877776655
No 324
>PLN02808 alpha-galactosidase
Probab=56.38 E-value=32 Score=28.57 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=38.1
Q ss_pred HHHHHhHHH-----HHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 53 RGITEKLDH-----FVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 53 ~~l~~~l~~-----l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+.+.+..+. ++++|++.|.|--=+.... ...|.- .+|| +|. +.++.|++.+|++|+|.=+
T Consensus 49 ~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~-----~~d~~rFP--~G~~~lad~iH~~GlkfGi 115 (386)
T PLN02808 49 TLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNL-----VPKASTFP--SGIKALADYVHSKGLKLGI 115 (386)
T ss_pred HHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCE-----eeChhhcC--ccHHHHHHHHHHCCCceEE
Confidence 344455554 7999999999966543322 111211 2222 222 4699999999999999877
No 325
>PRK05939 hypothetical protein; Provisional
Probab=56.34 E-value=19 Score=29.53 Aligned_cols=30 Identities=10% Similarity=-0.081 Sum_probs=25.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953 93 VDPLFGDMHDFEILIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 93 vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh 122 (136)
+....|...+++++++.||++|+.++++|-
T Consensus 140 p~NptG~v~dl~~I~~la~~~gi~livD~t 169 (397)
T PRK05939 140 IANPGTQVADLAGIGALCRERGLLYVVDNT 169 (397)
T ss_pred CCCCCCCHHhHHHHHHHHHHcCCEEEEECC
Confidence 344567889999999999999999999664
No 326
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=56.30 E-value=14 Score=31.61 Aligned_cols=18 Identities=28% Similarity=0.058 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHCCCcEEE
Q psy12953 102 DFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 102 ~~~~lv~~ah~~Gi~vil 119 (136)
=+.++|+.||..||+++.
T Consensus 459 I~~hII~MAk~L~L~iVa 476 (524)
T COG4943 459 IAPHIIEMAKSLGLKIVA 476 (524)
T ss_pred hHHHHHHHHHHcCCcEEe
Confidence 588999999999999998
No 327
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=56.11 E-value=18 Score=29.52 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHCCCcEEEeccCCCccCC
Q psy12953 99 DMHDFEILIEEAHSRGKPKRTFREVTKSFAN 129 (136)
Q Consensus 99 t~~~~~~lv~~ah~~Gi~vil~nh~~~~~~~ 129 (136)
|.+|+.+|-+.|.++||.++++|-.+.-+|+
T Consensus 197 TdeE~~kldalA~~~giPliIDnAYg~PFP~ 227 (417)
T COG3977 197 TDEELAKLDALARQHGIPLIIDNAYGVPFPG 227 (417)
T ss_pred cHHHHHHHHHHhhhcCCcEEEecccCCCCCc
Confidence 4689999999999999999998887776664
No 328
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=56.10 E-value=17 Score=29.26 Aligned_cols=26 Identities=12% Similarity=-0.003 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953 97 FGDMHDFEILIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 97 ~Gt~~~~~~lv~~ah~~Gi~vil~nh 122 (136)
.|+..+++++++.||++|+.++.+|-
T Consensus 149 ~~~~~dl~~I~~la~~~g~~lIvD~t 174 (366)
T PRK08247 149 LMQETDIAAIAKIAKKHGLLLIVDNT 174 (366)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 57889999999999999999998554
No 329
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=55.84 E-value=46 Score=25.04 Aligned_cols=48 Identities=15% Similarity=0.240 Sum_probs=33.4
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+..+.++.|.++||+.|.-+.=. .+..-..+.|++|++.+. ..|.||.
T Consensus 128 d~~~al~~L~~lG~~rVLTSGg~-----------------~~a~~g~~~L~~lv~~a~-~~i~Im~ 175 (201)
T PF03932_consen 128 DPEEALEQLIELGFDRVLTSGGA-----------------PTALEGIENLKELVEQAK-GRIEIMP 175 (201)
T ss_dssp THHHHHHHHHHHT-SEEEESTTS-----------------SSTTTCHHHHHHHHHHHT-TSSEEEE
T ss_pred CHHHHHHHHHhcCCCEEECCCCC-----------------CCHHHHHHHHHHHHHHcC-CCcEEEe
Confidence 46677889999999999876422 122233688999998755 4688887
No 330
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=55.80 E-value=14 Score=24.75 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=35.9
Q ss_pred HHHHH-cCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 60 DHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 60 ~~l~~-lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.++.. .|+..+...+..... .-...|..-+=+.-|...+..+.++.|+++|++++.
T Consensus 19 ~~l~~~~~~~~~~~~~~~~~~----~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 19 SLLLDEAKIPVYVVKDYTLPA----FVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVA 75 (119)
T ss_pred HHHHhccCCCEEEecCccCcC----CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
Confidence 34555 488888765522111 011223333445557888999999999999999998
No 331
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=55.74 E-value=24 Score=28.58 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=22.6
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPA 78 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~ 78 (136)
-+++.+.+.++.+.++|+.+|.|-|+.+.
T Consensus 54 ~sid~l~~~v~~~~~~GI~~v~lFgvi~~ 82 (324)
T PF00490_consen 54 YSIDSLVKEVEEAVDLGIRAVILFGVIDP 82 (324)
T ss_dssp EEHHHHHHHHHHHHHTT--EEEEEEE-SC
T ss_pred eCHHHHHHHHHHHHHCCCCEEEEEeeCCc
Confidence 45789999999999999999999998543
No 332
>PRK05660 HemN family oxidoreductase; Provisional
Probab=55.46 E-value=29 Score=28.26 Aligned_cols=52 Identities=8% Similarity=0.029 Sum_probs=32.7
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcE
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPK 117 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~v 117 (136)
+++..++++|++.|.+..=.- +..-+..+. +..+.++..+.++.+++.|++.
T Consensus 108 e~l~~Lk~~Gv~risiGvqS~--------~~~~L~~l~-r~~~~~~~~~ai~~~~~~G~~~ 159 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGVQSF--------SEEKLKRLG-RIHGPDEAKRAAKLAQGLGLRS 159 (378)
T ss_pred HHHHHHHHcCCCEEEeccCcC--------CHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCe
Confidence 667788888888888754111 111122232 3356777778888888888864
No 333
>PRK05926 hypothetical protein; Provisional
Probab=55.41 E-value=22 Score=29.13 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 93 VDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 93 vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+.|.--+.++..+.++.||+.||++-.
T Consensus 199 ~~p~~~t~~e~l~~i~~a~~~Gi~~~s 225 (370)
T PRK05926 199 LAPGRLSSQGFLEIHKTAHSLGIPSNA 225 (370)
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCcccC
Confidence 344445668889999999999998865
No 334
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.35 E-value=25 Score=27.69 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=41.2
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCC---CCHHHHHHHHHHHHHCCCcEEE-eccCCC
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLF---GDMHDFEILIEEAHSRGKPKRT-FREVTK 125 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~---Gt~~~~~~lv~~ah~~Gi~vil-~nh~~~ 125 (136)
...+.....++-|+.-|+.-...-++.. .+| .-.+.. ...+.++++++++|++|-++++ .+|.+.
T Consensus 34 ~~~~~y~~ra~gg~glii~e~~~v~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~ 102 (327)
T cd02803 34 ELIEYYEERAKGGVGLIITEAAYVDPEG-KGY------PGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGR 102 (327)
T ss_pred HHHHHHHHHhCcCCcEEEECcEEEcCcc-cCC------CCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCc
Confidence 3444445555567888877666555432 110 001111 1247899999999999999988 888765
No 335
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=55.26 E-value=12 Score=24.22 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=23.2
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCC
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGG 80 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~ 80 (136)
..+.+.++.+.+.|++.|.+.|.+-.+.
T Consensus 44 p~~~~~l~~l~~~g~~~v~vvPlfl~~G 71 (101)
T cd03416 44 PSLAEALDELAAQGATRIVVVPLFLLAG 71 (101)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeeEeCCC
Confidence 3566778889999999999999987653
No 336
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=55.25 E-value=38 Score=27.89 Aligned_cols=57 Identities=7% Similarity=-0.013 Sum_probs=36.9
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+..+..+.+..++++|+++|.+..--- +.| +.. .. ......+++-+++++.||+|..
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl-----~P~---~~~--~~--e~~~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDL-----IPF---GAP--PQ--ERDQIVRRFKKALDETGLKVPM 86 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEeccccc-----CCC---CCC--hh--HHHHHHHHHHHHHHHhCCeEEE
Confidence 345778889999999999998743110 000 000 00 0023478889999999999776
No 337
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=55.15 E-value=15 Score=28.71 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHCCCcEEE
Q psy12953 100 MHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil 119 (136)
.+++++|++.||+.||.+++
T Consensus 142 ~~~l~el~~~A~~LGm~~LV 161 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLV 161 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEE
Confidence 36799999999999999998
No 338
>PRK05434 phosphoglyceromutase; Provisional
Probab=55.09 E-value=35 Score=29.34 Aligned_cols=51 Identities=20% Similarity=0.310 Sum_probs=39.1
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCC-cEEE
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGK-PKRT 119 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi-~vil 119 (136)
..+.+.+++.++.| .+|+|+.++..+. |- +-.+.|..|++.|+++|+ +|.+
T Consensus 96 ~~~~~~~~~~~~~~-~~lHl~GL~Sdgg------VH---------sh~~hl~~l~~~a~~~g~~~v~v 147 (507)
T PRK05434 96 PALLDAIDKAKKNG-GALHLMGLLSDGG------VH---------SHIDHLFALLELAKEEGVKKVYV 147 (507)
T ss_pred HHHHHHHHHHHhcC-CeEEEEEeccCCC------cc---------cHHHHHHHHHHHHHHcCCCEEEE
Confidence 34566677888887 8999999886543 11 125789999999999999 8888
No 339
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=55.00 E-value=14 Score=24.22 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHCCCcEEE
Q psy12953 98 GDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 98 Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
-+.++.++|++.++++|..+++
T Consensus 97 ~~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 97 LTLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp SSHHHHHHHHHHHHHHTSCEEE
T ss_pred CCHHHHHHHHHHHHHhCCEEEE
Confidence 4689999999999999999876
No 340
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=54.99 E-value=51 Score=27.42 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=30.0
Q ss_pred CceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCc
Q psy12953 30 TAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFY 76 (136)
Q Consensus 30 ~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~ 76 (136)
+..+|-++.- ++..++.++.+++++.|.+++.+.|..
T Consensus 191 ~~~~ya~NiT----------~~~~em~~ra~~~~~~G~~~~mv~~~~ 227 (391)
T cd08209 191 RRTLYAVNLT----------GPVFTLKEKARRLVEAGANALLFNVFA 227 (391)
T ss_pred CcceEEEEcC----------CCHHHHHHHHHHHHHhCCCEEEEeccc
Confidence 4466766652 567899999999999999999998865
No 341
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=54.95 E-value=50 Score=26.08 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=35.0
Q ss_pred HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCC-cEEE
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGK-PKRT 119 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi-~vil 119 (136)
.+.++.|++.|++.|.++- .+.+...|..+... ++.+++.+-++.+.+.|+ .|.+
T Consensus 108 ~~~~~~L~~agl~~i~ISl--------ds~~~e~~~~i~~~-~~~~~vl~~i~~~~~~g~~~v~i 163 (331)
T PRK00164 108 ARRAAALKDAGLDRVNVSL--------DSLDPERFKAITGR-DRLDQVLAGIDAALAAGLTPVKV 163 (331)
T ss_pred HHHHHHHHHcCCCEEEEEe--------ccCCHHHhccCCCC-CCHHHHHHHHHHHHHCCCCcEEE
Confidence 3456677777777776543 11122223344333 678899999999999998 6554
No 342
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=54.91 E-value=68 Score=26.05 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=24.1
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPF 75 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi 75 (136)
-+.+.+.+.++.+.++|+++|.|-|+
T Consensus 56 ~s~d~l~~~v~~~~~~Gi~av~LFgv 81 (323)
T PRK09283 56 LSIDLLVKEAEEAVELGIPAVALFGV 81 (323)
T ss_pred eCHHHHHHHHHHHHHCCCCEEEEeCc
Confidence 46789999999999999999999999
No 343
>TIGR03557 F420_G6P_family F420-dependent oxidoreductase, G6PDH family. Members of this protein family include F420-dependent glucose-6-phosphate dehydrogenases (TIGR03554) and related proteins. All members of this family come from species that synthesize coenzyme F420.
Probab=54.81 E-value=18 Score=28.75 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=24.0
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPF 75 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi 75 (136)
||..++.++|..+++.|++++.+.|.
T Consensus 270 gtpe~~~~~l~~~~~aG~d~~~l~~~ 295 (316)
T TIGR03557 270 PDPDRHVEAVREYVDAGFDEVALVQI 295 (316)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECC
Confidence 48999999999999999999999874
No 344
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=54.71 E-value=60 Score=24.01 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=33.5
Q ss_pred HHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q psy12953 59 LDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFR 121 (136)
Q Consensus 59 l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~n 121 (136)
.+.|++.|+++|.+-= ...-- .-|...+ -+++++-+++++++||+|++.+
T Consensus 20 ~~~L~~~Gikgvi~Dl----DNTLv--------~wd~~~~-tpe~~~W~~e~k~~gi~v~vvS 69 (175)
T COG2179 20 PDILKAHGIKGVILDL----DNTLV--------PWDNPDA-TPELRAWLAELKEAGIKVVVVS 69 (175)
T ss_pred HHHHHHcCCcEEEEec----cCcee--------cccCCCC-CHHHHHHHHHHHhcCCEEEEEe
Confidence 5689999999998721 00000 0112222 2579999999999999999933
No 345
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=54.54 E-value=21 Score=26.87 Aligned_cols=57 Identities=7% Similarity=-0.021 Sum_probs=35.5
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC-CHHHHHHHHHHHHHCCCcEEE
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG-DMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G-t~~~~~~lv~~ah~~Gi~vil 119 (136)
+.+.+.++..++||++.|.+.+-.... +. ..+.... ..+.++++++.|.+.||++.+
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~---------~~-~~~~~~~~~~~~l~~l~~~A~~~gi~l~l 141 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPA---------GV-SPEEARATLVENLRYAADALDRIGLTLLI 141 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCC---------CC-CHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 455567888999999999765421110 00 0000000 124689999999999999998
No 346
>PRK07094 biotin synthase; Provisional
Probab=54.36 E-value=68 Score=25.22 Aligned_cols=32 Identities=16% Similarity=0.404 Sum_probs=25.3
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGG 80 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~ 80 (136)
+.+.+++.+.+..+++++++.+.+.|+.+.+.
T Consensus 191 get~ed~~~~l~~l~~l~~~~v~~~~~~P~pg 222 (323)
T PRK07094 191 GQTLEDLADDILFLKELDLDMIGIGPFIPHPD 222 (323)
T ss_pred CCCHHHHHHHHHHHHhCCCCeeeeeccccCCC
Confidence 35778888888888888888888888777653
No 347
>KOG2499|consensus
Probab=54.33 E-value=14 Score=31.69 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHCCCcEEE----eccCCC
Q psy12953 99 DMHDFEILIEEAHSRGKPKRT----FREVTK 125 (136)
Q Consensus 99 t~~~~~~lv~~ah~~Gi~vil----~nh~~~ 125 (136)
|++|.+++|+-|+-+||+|+. +-|++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 589999999999999999999 666554
No 348
>PLN02950 4-alpha-glucanotransferase
Probab=54.33 E-value=34 Score=31.56 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953 98 GDMHDFEILIEEAHSRGKPKRT---FREVTK 125 (136)
Q Consensus 98 Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~ 125 (136)
|+..++++||+-|++.|.+++- .|.++.
T Consensus 280 GDf~dl~~~id~~a~~G~~~~QilPl~~t~~ 310 (909)
T PLN02950 280 GEFLDLKLLVDWAVKSGLHLVQLLPVNDTSV 310 (909)
T ss_pred eCHHHHHHHHHHHHHcCCCEEEECCCCCCCC
Confidence 7888999999999999999988 555543
No 349
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=54.31 E-value=20 Score=29.25 Aligned_cols=28 Identities=11% Similarity=0.048 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEeccC
Q psy12953 96 LFGDMHDFEILIEEAHSRGKPKRTFREV 123 (136)
Q Consensus 96 ~~Gt~~~~~~lv~~ah~~Gi~vil~nh~ 123 (136)
..|...+++++++.||++|+.++++|--
T Consensus 147 p~g~~~dl~~I~~la~~~g~~livD~t~ 174 (377)
T TIGR01324 147 ITFEIQDIPAIAKAARNPGIVIMIDNTW 174 (377)
T ss_pred CCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 3577899999999999999999995553
No 350
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=53.99 E-value=14 Score=23.30 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=19.6
Q ss_pred HhHHHHHHcCCcEEEEcCCccCC
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAG 79 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~ 79 (136)
..++.++++|+..|+-+|+-..+
T Consensus 28 ~~~~~~~~~G~~~V~yLPLAa~~ 50 (79)
T PF12996_consen 28 SFVEEYRNLGAENVFYLPLAANP 50 (79)
T ss_pred HHHHHHHHcCCCCEEEccccCCH
Confidence 46789999999999999987654
No 351
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=53.88 E-value=19 Score=24.42 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHCCCcEEE
Q psy12953 98 GDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 98 Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.+|++++++.|+++|+++.+
T Consensus 8 ~s~~ev~~~v~~a~~~~~~v~~ 29 (139)
T PF01565_consen 8 KSVEEVQAIVKFANENGVPVRV 29 (139)
T ss_dssp SSHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEE
Confidence 3679999999999999999999
No 352
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=53.83 E-value=18 Score=29.54 Aligned_cols=27 Identities=7% Similarity=0.192 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHCCCcEEE-eccCCCc
Q psy12953 100 MHDFEILIEEAHSRGKPKRT-FREVTKS 126 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil-~nh~~~~ 126 (136)
.+.++++++++|++|-++++ .+|.+..
T Consensus 78 i~~~~~lad~vH~~Ga~i~~QL~H~Gr~ 105 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAVQLWHTGRI 105 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEEeccCCCCC
Confidence 46799999999999999999 8887653
No 353
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=53.68 E-value=27 Score=27.36 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=30.3
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
|+.+.+..+++.|++.|.+.-+- .++-.++.++|+++||..+.
T Consensus 103 G~e~F~~~~~~aGvdGlIipDLP-----------------------~ee~~~~~~~~~~~gl~~I~ 145 (259)
T PF00290_consen 103 GIERFFKEAKEAGVDGLIIPDLP-----------------------PEESEELREAAKKHGLDLIP 145 (259)
T ss_dssp -HHHHHHHHHHHTEEEEEETTSB-----------------------GGGHHHHHHHHHHTT-EEEE
T ss_pred chHHHHHHHHHcCCCEEEEcCCC-----------------------hHHHHHHHHHHHHcCCeEEE
Confidence 55666778888899888885432 13456777889999999887
No 354
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.43 E-value=42 Score=19.29 Aligned_cols=63 Identities=13% Similarity=0.136 Sum_probs=37.0
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKR 118 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vi 118 (136)
|.+.++.+ .+++.|++-.-+...........++....+ .++- .+.+++.++++++.++|.++.
T Consensus 10 G~L~~i~~---~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i-~v~~--~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 10 GQLAKLLA---VIAEAGANIIEVSHDRAFKTLPLGEVEVEL-TLET--RGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred ChHHHHHH---HHHHcCCCEEEEEEEeccCCCCCceEEEEE-EEEe--CCHHHHHHHHHHHHHcCCEEe
Confidence 55555544 778888877766532221111123333222 2222 457889999999999998774
No 355
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=53.41 E-value=18 Score=29.25 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHCCCcEEE-eccCCCc
Q psy12953 100 MHDFEILIEEAHSRGKPKRT-FREVTKS 126 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil-~nh~~~~ 126 (136)
.+.++++++++|++|=++++ .+|.+..
T Consensus 77 i~~~~~l~~~vh~~G~~i~~QL~h~G~~ 104 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAILQIFHAGRM 104 (353)
T ss_pred hHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 57899999999999999998 8897663
No 356
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=53.38 E-value=7.8 Score=26.18 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=16.7
Q ss_pred HHhHHHHHHcCCcEEEEcCCcc
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYP 77 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~ 77 (136)
.+.+.-++++|+.+|.+-+--+
T Consensus 15 ~r~~ra~r~~Gi~tv~v~s~~d 36 (110)
T PF00289_consen 15 VRIIRALRELGIETVAVNSNPD 36 (110)
T ss_dssp HHHHHHHHHTTSEEEEEEEGGG
T ss_pred HHHHHHHHHhCCcceeccCchh
Confidence 4457789999999999865444
No 357
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=53.36 E-value=74 Score=24.71 Aligned_cols=55 Identities=18% Similarity=0.159 Sum_probs=40.9
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEe
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTF 120 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~ 120 (136)
+.++...+..-+.+.|-|=-...- .++|.++. +..+.++..++.+|+.||+|-+|
T Consensus 74 emi~ia~~vkP~~vtLVPEkr~ElTTegGldv~---------~~~~~l~~~i~~l~~~gI~VSLF 129 (237)
T TIGR00559 74 EMIRIAEEIKPEQVTLVPEARDEVTTEGGLDVA---------RLKDKLCELVKRFHAAGIEVSLF 129 (237)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCccCCcCchhh---------hCHHHHHHHHHHHHHCCCEEEEE
Confidence 456677778888999988655443 44565553 23478999999999999999994
No 358
>TIGR03554 F420_G6P_DH glucose-6-phosphate dehydrogenase, F420-dependent. This family consists of the F420-dependent glucose-6-phosphate dehydrogenase of Mycobacterium and Nocardia. It shows homology to several other F420-dependent enzymes rather than to the NAD or NADP-dependent glucose-6-phosphate dehydrogenases.
Probab=53.32 E-value=18 Score=28.85 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=24.3
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcC
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQP 74 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~P 74 (136)
.|+...+.++|..+++.|++++.+.+
T Consensus 285 ~Gtpe~v~e~l~~~~~aGv~~~~l~~ 310 (331)
T TIGR03554 285 ASDPDEAVEQVGQYVDWGLNHLVFHA 310 (331)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 59999999999999999999999877
No 359
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=53.29 E-value=48 Score=23.88 Aligned_cols=22 Identities=18% Similarity=0.561 Sum_probs=17.4
Q ss_pred HHHHHHcCCcEEEEcCCccCCC
Q psy12953 59 LDHFVDLGIESLWIQPFYPAGG 80 (136)
Q Consensus 59 l~~l~~lG~~~I~l~Pi~~~~~ 80 (136)
+..+.+.|++.|.+.|+|++.+
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~s 129 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSS 129 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SS
T ss_pred HHHhhhcCCCEEEECCccCCCC
Confidence 5567789999999999999875
No 360
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=53.19 E-value=19 Score=29.07 Aligned_cols=27 Identities=11% Similarity=0.270 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHCCCcEEE-eccCCCc
Q psy12953 100 MHDFEILIEEAHSRGKPKRT-FREVTKS 126 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil-~nh~~~~ 126 (136)
.+.++++++++|++|-++++ .+|.+..
T Consensus 76 i~~lr~la~~vh~~ga~~~~QL~H~G~~ 103 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFLQLWHVGRV 103 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcccCccC
Confidence 46799999999999999999 8887653
No 361
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=53.08 E-value=25 Score=26.31 Aligned_cols=68 Identities=10% Similarity=0.157 Sum_probs=47.1
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCC------------------CCCC---------CCCccCCCCCCCC-CCCHHH
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAG------------------GADL---------GYDVSNYVDVDPL-FGDMHD 102 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~------------------~~~~---------gY~~~d~~~vd~~-~Gt~~~ 102 (136)
+..+..+.++.|.+.++..|. -|+.... +.-. --...|...+|+. .|+..+
T Consensus 106 ~~~~a~~~~~~l~~~~i~~iE-eP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~ 184 (229)
T cd00308 106 TPKEAIRLIRALEKYGLAWIE-EPCAPDDLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTE 184 (229)
T ss_pred CHHHHHHHHHHhhhcCCCeEE-CCCCccCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 456667777888888887777 5654310 0000 0124555667754 599999
Q ss_pred HHHHHHHHHHCCCcEEE
Q psy12953 103 FEILIEEAHSRGKPKRT 119 (136)
Q Consensus 103 ~~~lv~~ah~~Gi~vil 119 (136)
.+++++.|+++|+.++.
T Consensus 185 ~~~i~~~a~~~gi~~~~ 201 (229)
T cd00308 185 SRRAADLAEAFGIRVMV 201 (229)
T ss_pred HHHHHHHHHHcCCEEee
Confidence 99999999999999999
No 362
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=52.97 E-value=19 Score=29.46 Aligned_cols=67 Identities=7% Similarity=-0.041 Sum_probs=39.1
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCCCc
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVTKS 126 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~~~ 126 (136)
......++-|+.-|..-....++.. .++ +...-.+.. =...+.++++++++|++|-++++ .+|.+..
T Consensus 42 ~y~~~rA~gG~GLIi~e~~~V~~~~-~~~-~~~~~~l~~-d~~i~~~~~l~~~vh~~G~~i~~QL~H~G~~ 109 (370)
T cd02929 42 AMRGIKAEGGWGVVNTEQCSIHPSS-DDT-PRISARLWD-DGDIRNLAAMTDAVHKHGALAGIELWHGGAH 109 (370)
T ss_pred HHHHHHhCCCceEEEEeeeEEcccc-ccC-cccCcCcCC-HHHHHHHHHHHHHHHHCCCeEEEecccCCCC
Confidence 3333445567777777655544331 111 000000100 01257899999999999999999 8888763
No 363
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=52.95 E-value=19 Score=24.04 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=20.9
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCc
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFY 76 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~ 76 (136)
+.+.+.++.|+++|...|...||-
T Consensus 74 ~~v~~~~~~Lk~~GA~~Ilv~~i~ 97 (100)
T TIGR03455 74 KVVNELIDKLKAAGARDILVLPIE 97 (100)
T ss_pred HHHHHHHHHHHHcCCCeEEEechH
Confidence 467777889999999999999985
No 364
>PRK06256 biotin synthase; Validated
Probab=52.88 E-value=78 Score=25.07 Aligned_cols=54 Identities=13% Similarity=-0.006 Sum_probs=35.6
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHH
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHS 112 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~ 112 (136)
.+..++.+.+..++++|++.|.+.++.+.+... +.. ....+.++..+++..++-
T Consensus 213 Et~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~-------l~~--~~~~~~~e~l~~ia~~Rl 266 (336)
T PRK06256 213 ESLEDRVEHAFFLKELDADSIPINFLNPIPGTP-------LEN--HPELTPLECLKTIAIFRL 266 (336)
T ss_pred CCHHHHHHHHHHHHhCCCCEEeecccccCCCCC-------CCC--CCCCCHHHHHHHHHHHHH
Confidence 567888888889999999988888776654321 111 123466777767666554
No 365
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.81 E-value=83 Score=23.34 Aligned_cols=48 Identities=15% Similarity=0.256 Sum_probs=33.9
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFR 121 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~n 121 (136)
+.....+.++.+.+.++++|.+.|... +.+...++.+.++|+.|++++
T Consensus 42 ~~~~~~~~i~~l~~~~vdgiii~~~~~-----------------------~~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 42 DVADMARLIEAAIAAKPDGIVVTIPDP-----------------------DALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCCh-----------------------HHhHHHHHHHHHCCCeEEEeC
Confidence 445666667777777888888877421 235567788899999999943
No 366
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=52.76 E-value=70 Score=25.42 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=42.1
Q ss_pred EEEecccccCcC---CCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHH
Q psy12953 34 YQIYPRSFRDVN---GDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEA 110 (136)
Q Consensus 34 Y~v~~~~f~~~~---~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~a 110 (136)
.+|+.++..... ..+.|.|+.+.+.+..+++.|+..-.-.-++.. -+.+++.++++.+
T Consensus 127 i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~~-------------------~n~~ei~~~~~~~ 187 (318)
T TIGR03470 127 FSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTLFND-------------------TDPEEVAEFFDYL 187 (318)
T ss_pred EEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEEeCC-------------------CCHHHHHHHHHHH
Confidence 466666642111 123588999999999999999864332222221 1246788888888
Q ss_pred HHCCCcEEE
Q psy12953 111 HSRGKPKRT 119 (136)
Q Consensus 111 h~~Gi~vil 119 (136)
++.|++-+.
T Consensus 188 ~~lGv~~i~ 196 (318)
T TIGR03470 188 TDLGVDGMT 196 (318)
T ss_pred HHcCCCEEE
Confidence 888884443
No 367
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=52.72 E-value=75 Score=25.25 Aligned_cols=51 Identities=10% Similarity=-0.053 Sum_probs=35.6
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCC
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTK 125 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~ 125 (136)
.+.+.+..+.+.|+..+.+.. .|+. .++=++|++.|+++||+|+=+|-++.
T Consensus 77 ~v~~~l~e~~~~gvk~avI~s--------~Gf~-------------~~~~~~l~~~a~~~girvlGPNc~Gi 127 (291)
T PRK05678 77 FAADAILEAIDAGIDLIVCIT--------EGIP-------------VLDMLEVKAYLERKKTRLIGPNCPGI 127 (291)
T ss_pred HHHHHHHHHHHCCCCEEEEEC--------CCCC-------------HHHHHHHHHHHHHcCCEEECCCCCcc
Confidence 345556678888888866643 2321 34446899999999999997666554
No 368
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=52.64 E-value=42 Score=27.00 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=30.6
Q ss_pred HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCc
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKP 116 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~ 116 (136)
.++++.++++||+.|.+.- ... +..-...+ .+-.+.++..+.++.+++.|+.
T Consensus 98 ~e~l~~l~~~GvnRiSiGv-QS~-------~~~~L~~l-gR~~~~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGV-QSF-------NEDKLKFL-GRIHSQKQIIKAIENAKKAGFE 149 (350)
T ss_pred HHHHHHHHHcCCCEEEEec-ccC-------CHHHHHHc-CCCCCHHHHHHHHHHHHHcCCC
Confidence 3667788888888887643 110 01111222 2334567777777788877775
No 369
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=52.63 E-value=26 Score=28.29 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=21.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 92 DVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 92 ~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.+.-.+.++..+.++.||+.||++-.
T Consensus 179 ~i~~~~~~~~~~l~~i~~a~~~Gi~~~s 206 (351)
T TIGR03700 179 QICPEKISAERWLEIHRTAHELGLKTNA 206 (351)
T ss_pred hcCCCCCCHHHHHHHHHHHHHcCCCcce
Confidence 3445444567888999999999999866
No 370
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=52.53 E-value=38 Score=28.34 Aligned_cols=51 Identities=14% Similarity=0.022 Sum_probs=27.6
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCc
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKP 116 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~ 116 (136)
+.++.++++|++.|.+..=.- +..-...++ +-.+.++..+.++.+++.|++
T Consensus 153 e~l~~L~~~G~~rvsiGvQS~--------~~~vl~~l~-R~~~~~~~~~ai~~lr~~G~~ 203 (453)
T PRK13347 153 EMLQALAALGFNRASFGVQDF--------DPQVQKAIN-RIQPEEMVARAVELLRAAGFE 203 (453)
T ss_pred HHHHHHHHcCCCEEEECCCCC--------CHHHHHHhC-CCCCHHHHHHHHHHHHhcCCC
Confidence 456666666777666643100 011111222 235667777777777777775
No 371
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=52.40 E-value=17 Score=28.66 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=31.5
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCC-CC-CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVD-VD-PLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~-vd-~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..|..+...|+.|+++||..|.=-|-.-.-. ..|.. ++ .-+| -+-=-+|++.||++||-.+-
T Consensus 92 DP~~~~~~fl~~lk~~Gf~GV~NfPTvgliD-------G~fR~~LEe~Gmg-y~~EVemi~~A~~~gl~T~~ 155 (268)
T PF09370_consen 92 DPFRDMDRFLDELKELGFSGVQNFPTVGLID-------GQFRQNLEETGMG-YDREVEMIRKAHEKGLFTTA 155 (268)
T ss_dssp -TT--HHHHHHHHHHHT-SEEEE-S-GGG---------HHHHHHHHHTT---HHHHHHHHHHHHHTT-EE--
T ss_pred CCCCcHHHHHHHHHHhCCceEEECCcceeec-------cHHHHHHHhcCCC-HHHHHHHHHHHHHCCCeeee
Confidence 5678999999999999999998777432100 00000 00 0011 12224689999999997665
No 372
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=51.94 E-value=49 Score=27.73 Aligned_cols=38 Identities=8% Similarity=0.022 Sum_probs=29.5
Q ss_pred CceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCc
Q psy12953 30 TAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFY 76 (136)
Q Consensus 30 ~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~ 76 (136)
+..+|-++.-. .+..++.++.++++++|.+++.+.+..
T Consensus 199 ~~~~y~~NiT~---------~~~~em~~ra~~~~~~G~~~~mv~~~~ 236 (414)
T cd08206 199 EAKGHYLNITA---------DTPEEMIKRAEFAKELGSVIVMVDGVT 236 (414)
T ss_pred CcceEEeccCC---------CcHHHHHHHHHHHHHhCCcEEEEeeec
Confidence 34666655532 348999999999999999999998865
No 373
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.81 E-value=86 Score=23.17 Aligned_cols=26 Identities=12% Similarity=0.365 Sum_probs=18.7
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPF 75 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi 75 (136)
++.....+.++.+.+.++++|.+.|.
T Consensus 41 ~~~~~~~~~i~~~~~~~~dgiIi~~~ 66 (271)
T cd06321 41 YDLNKQVSQIDNFIAAKVDLILLNAV 66 (271)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 34556666677778888888888774
No 374
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=51.72 E-value=15 Score=30.69 Aligned_cols=28 Identities=14% Similarity=-0.002 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHCCCcEEE--eccCCCccC
Q psy12953 101 HDFEILIEEAHSRGKPKRT--FREVTKSFA 128 (136)
Q Consensus 101 ~~~~~lv~~ah~~Gi~vil--~nh~~~~~~ 128 (136)
-.+.+|++.|+++|.+||+ +-|+..+..
T Consensus 242 ~~lgeL~~rA~e~gVQvMVEGPGHVPl~~I 271 (420)
T PF01964_consen 242 IILGELVKRAREAGVQVMVEGPGHVPLNQI 271 (420)
T ss_dssp HHHHHHHHHHHHTT--EEEEE-SB--GGGH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCCCCHHHH
Confidence 3578899999999999999 888877653
No 375
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=51.69 E-value=41 Score=29.05 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=42.5
Q ss_pred HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccCC
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFAN 129 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~~ 129 (136)
.+.|+.++++|++.|.|..=.-++ .+ ...+ .+--+.++..+.++.+++.|++|.+ |+-.+-|.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d------~V--L~~i-nRght~~~v~~Ai~~lr~~G~~v~~--~LM~GLPg 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYN------DI--LERT-KRGHTVRDVVEATRLLRDAGLKVVY--HIMPGLPG 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCH------HH--HHHh-CCCCCHHHHHHHHHHHHHcCCeEEE--EeecCCCC
Confidence 467889999999999986511110 01 1122 2234678999999999999999888 65554443
No 376
>PRK15108 biotin synthase; Provisional
Probab=51.68 E-value=53 Score=26.56 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHCCCcEEE
Q psy12953 98 GDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 98 Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
++.++..+.++.||+.|+++-.
T Consensus 168 ~~~~~rl~~i~~a~~~G~~v~s 189 (345)
T PRK15108 168 RTYQERLDTLEKVRDAGIKVCS 189 (345)
T ss_pred CCHHHHHHHHHHHHHcCCceee
Confidence 4788999999999999998875
No 377
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=51.63 E-value=84 Score=24.09 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=33.8
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFR 121 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~n 121 (136)
+.....+.++.+.+.+++.|.+.|... +.+...++++.+.||.|+++|
T Consensus 42 ~~~~q~~~i~~l~~~~vdgiii~~~~~-----------------------~~~~~~~~~~~~~giPvV~~~ 89 (303)
T cd01539 42 NQSTQNEQIDTALAKGVDLLAVNLVDP-----------------------TAAQTVINKAKQKNIPVIFFN 89 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCch-----------------------hhHHHHHHHHHHCCCCEEEeC
Confidence 445555667777788888888876321 235678888899999999843
No 378
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=51.54 E-value=19 Score=25.22 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHCCCcEEE
Q psy12953 101 HDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 101 ~~~~~lv~~ah~~Gi~vil 119 (136)
+||+-|++.|++.|+++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lf 54 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLF 54 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHcCCceEE
Confidence 5899999999999999998
No 379
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=51.31 E-value=17 Score=29.03 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=20.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 94 DPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 94 d~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.|.-.+.++..+.++.||+.||++..
T Consensus 174 ~~~~~s~~~~l~~i~~a~~~Gi~v~~ 199 (340)
T TIGR03699 174 SPKKISSEEWLEVMETAHKLGLPTTA 199 (340)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 34445788889999999999998765
No 380
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=51.30 E-value=12 Score=21.55 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHH-HHCCCc
Q psy12953 97 FGDMHDFEILIEEA-HSRGKP 116 (136)
Q Consensus 97 ~Gt~~~~~~lv~~a-h~~Gi~ 116 (136)
|-+++++.+|++++ +.+|++
T Consensus 4 ~~~~e~ld~L~~aL~~prG~R 24 (46)
T PF15614_consen 4 YDDPEELDELLKALENPRGKR 24 (46)
T ss_pred ccCHHHHHHHHHHHcCcccHh
Confidence 45789999999999 888875
No 381
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=51.07 E-value=1.3e+02 Score=24.43 Aligned_cols=65 Identities=9% Similarity=0.042 Sum_probs=44.8
Q ss_pred EecccccCcCCCCCCCHHHHHHhHHHHHHcC-CcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCC
Q psy12953 36 IYPRSFRDVNGDGTGDMRGITEKLDHFVDLG-IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114 (136)
Q Consensus 36 v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG-~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~G 114 (136)
+..+++.| +...+.+..+.++.++ +..|.|.|..+.+.. + |... +.++++++.+.+.++|
T Consensus 258 vLIpGvND-------s~e~a~~La~~l~~l~~~~~VnLIPynp~~~~--~-----~~~p-----s~e~i~~f~~~L~~~g 318 (348)
T PRK14467 258 VLIKGVND-------SPEDALRLAQLIGKNKKKFKVNLIPFNPDPEL--P-----YERP-----ELERVYKFQKILWDNG 318 (348)
T ss_pred EEECCccC-------CHHHHHHHHHHHhcCCCceEEEEecCCCCCCC--C-----CCCC-----CHHHHHHHHHHHHHCC
Confidence 34556653 3456666667788774 678999998865432 2 2222 3578888888899999
Q ss_pred CcEEE
Q psy12953 115 KPKRT 119 (136)
Q Consensus 115 i~vil 119 (136)
+.|.+
T Consensus 319 i~v~v 323 (348)
T PRK14467 319 ISTFV 323 (348)
T ss_pred CcEEE
Confidence 99988
No 382
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=50.97 E-value=38 Score=29.24 Aligned_cols=80 Identities=14% Similarity=0.061 Sum_probs=48.8
Q ss_pred eEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC--CCCCC---CccCCCCCCCCC-----CCHH
Q psy12953 32 IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG--ADLGY---DVSNYVDVDPLF-----GDMH 101 (136)
Q Consensus 32 ~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~--~~~gY---~~~d~~~vd~~~-----Gt~~ 101 (136)
++.|+.-..+. .+...+.+.+..|+++|+. |.|--+=...+ ....- -+.|+-.+|..+ ++..
T Consensus 525 l~lEi~E~~~~-------~~~~~~~~~~~~l~~~G~~-ialDdfG~g~ss~~~L~~~~~l~~d~iKid~~~~~~~~~~~~ 596 (660)
T PRK11829 525 LLLEITETAQI-------QDLDEALRLLRELQGLGLL-IALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPEDDA 596 (660)
T ss_pred EEEEEcCchhh-------cCHHHHHHHHHHHHhCCCE-EEEECCCCchhhHHHHhccCCCCCcEEEECHHHHhcccCCHH
Confidence 55555544433 5677888889999999998 44432211100 00111 245555566443 2344
Q ss_pred HHHHHHHHHHHCCCcEEE
Q psy12953 102 DFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 102 ~~~~lv~~ah~~Gi~vil 119 (136)
-++.++..||..|++|+.
T Consensus 597 ~~~~i~~~a~~l~~~via 614 (660)
T PRK11829 597 IARIISCVSDVLKVRVMA 614 (660)
T ss_pred HHHHHHHHHHHcCCeEEE
Confidence 577788899999999998
No 383
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=50.92 E-value=19 Score=24.14 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=23.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 93 VDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 93 vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+=+.-|..++..+.++.|+++|.+++.
T Consensus 53 ~iS~SG~t~~~~~~~~~a~~~g~~vi~ 79 (120)
T cd05710 53 LASHSGNTKETVAAAKFAKEKGATVIG 79 (120)
T ss_pred EEeCCCCChHHHHHHHHHHHcCCeEEE
Confidence 344557889999999999999999998
No 384
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=50.85 E-value=53 Score=26.59 Aligned_cols=51 Identities=18% Similarity=0.105 Sum_probs=28.0
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCc
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKP 116 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~ 116 (136)
+.++.++++|++.|.+..=.- +..-+..+. +-.+.++..+.++.+++.|+.
T Consensus 101 e~l~~l~~~G~~rvsiGvqS~--------~~~~l~~l~-r~~~~~~~~~~i~~l~~~g~~ 151 (377)
T PRK08599 101 EKLQVLKDSGVNRISLGVQTF--------NDELLKKIG-RTHNEEDVYEAIANAKKAGFD 151 (377)
T ss_pred HHHHHHHHcCCCEEEEecccC--------CHHHHHHcC-CCCCHHHHHHHHHHHHHcCCC
Confidence 445566666666665543111 011111222 335677888888888888876
No 385
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=50.53 E-value=80 Score=23.28 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=12.5
Q ss_pred HHHHHHHHHHCCCcEEEec
Q psy12953 103 FEILIEEAHSRGKPKRTFR 121 (136)
Q Consensus 103 ~~~lv~~ah~~Gi~vil~n 121 (136)
....++.++++||.|++++
T Consensus 69 ~~~~i~~~~~~~ipvV~~~ 87 (273)
T cd06305 69 LKPWVKRALDAGIPVVAFD 87 (273)
T ss_pred hHHHHHHHHHcCCCEEEec
Confidence 4455667777788777733
No 386
>PRK00719 alkanesulfonate monooxygenase; Provisional
Probab=50.38 E-value=22 Score=29.07 Aligned_cols=26 Identities=19% Similarity=0.543 Sum_probs=24.1
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcC
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQP 74 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~P 74 (136)
.|+..++.++|..+.++|++.+.|.+
T Consensus 304 vGspe~Vae~l~~~~~~Gvd~fil~~ 329 (378)
T PRK00719 304 VGDPPTVAARIKEYAALGIDTFILSG 329 (378)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 59999999999999999999999954
No 387
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=50.28 E-value=18 Score=27.75 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=28.1
Q ss_pred ccCCCCCCCC-CCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 87 VSNYVDVDPL-FGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 87 ~~d~~~vd~~-~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..|...+|+. .|+..+.+++++.|+++|+++++
T Consensus 199 ~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~ 232 (263)
T cd03320 199 ALGALVLKPALLGGPRALLELAEEARARGIPAVV 232 (263)
T ss_pred CCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEE
Confidence 4455567764 69999999999999999999999
No 388
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=50.13 E-value=19 Score=27.85 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=31.8
Q ss_pred HHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC------------CHHHHHHHHHHHHHCCCcEEE
Q psy12953 59 LDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG------------DMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 59 l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G------------t~~~~~~lv~~ah~~Gi~vil 119 (136)
++-.++.|+++|=+.-.....-........+|..-++..+ +.+++++|.+.|+++||..+.
T Consensus 2 I~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~s 74 (241)
T PF03102_consen 2 IDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGIDFFS 74 (241)
T ss_dssp HHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4667889999998765433211000000111222222111 258999999999999999887
No 389
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=50.09 E-value=61 Score=23.80 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHCCCcEEEeccCCC
Q psy12953 100 MHDFEILIEEAHSRGKPKRTFREVTK 125 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil~nh~~~ 125 (136)
.+.-+.++++|.+.|++-+++.-.+.
T Consensus 80 ~~~~~~li~Aa~~agVk~~v~ss~~~ 105 (233)
T PF05368_consen 80 LEQQKNLIDAAKAAGVKHFVPSSFGA 105 (233)
T ss_dssp HHHHHHHHHHHHHHT-SEEEESEESS
T ss_pred hhhhhhHHHhhhccccceEEEEEecc
Confidence 56789999999999999998433333
No 390
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=50.06 E-value=1.2e+02 Score=25.48 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=58.3
Q ss_pred CCceEEEEecccccCcCCCCCCCHH--------HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC-CCCCC
Q psy12953 29 QTAIMYQIYPRSFRDVNGDGTGDMR--------GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD-PLFGD 99 (136)
Q Consensus 29 ~~~~iY~v~~~~f~~~~~~~~g~~~--------~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt 99 (136)
+..++|+.|+..|.+..--+...|- +=.+...-+|+.|+.-|.++-=+..+..-+ +++|..=+ +..|.
T Consensus 22 e~~~~~~fh~nT~~dq~~f~~~~f~~~Ftae~wDP~eWar~fK~aGAKyvilvakHHDGFaLw---~t~ys~wnsvk~Gp 98 (430)
T COG3669 22 EGSPFYHFHPNTYGDQEWFGGQEFPPRFTAENWDPREWARLFKEAGAKYVILVAKHHDGFALW---PTDYSVWNSVKRGP 98 (430)
T ss_pred cCCceEEeccccccCcccccccccccccCcccCCHHHHHHHHHHcCCcEEEEeeeecCCeeec---ccccccccccccCC
Confidence 4578999999998765321111111 112334579999999887766554333212 34555533 55665
Q ss_pred -HHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953 100 -MHDFEILIEEAHSRGKPKRTFREVT 124 (136)
Q Consensus 100 -~~~~~~lv~~ah~~Gi~vil~nh~~ 124 (136)
.+=+.++.+++.+.||+-=+.+|-+
T Consensus 99 KrDlvgela~Avr~qGL~FGvy~s~a 124 (430)
T COG3669 99 KRDLVGELAKAVREQGLRFGVYLSGA 124 (430)
T ss_pred cccHHHHHHHHHHHcCCeeeEeeccC
Confidence 4568899999999999877766744
No 391
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=49.98 E-value=8.4 Score=24.41 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=17.9
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCcc
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYP 77 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~ 77 (136)
.+.+.++.|+++|.+.|...||..
T Consensus 51 ~~~~~~~~Lk~~GA~~Ilv~pi~~ 74 (75)
T PF08029_consen 51 QVWDLMDKLKAAGASDILVLPIEK 74 (75)
T ss_dssp CHHHHHHHHHCTT-EEEEEEE-S-
T ss_pred HHHHHHHHHHHcCCCEEEEEeccc
Confidence 456677799999999999999853
No 392
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=49.82 E-value=1.2e+02 Score=23.52 Aligned_cols=67 Identities=9% Similarity=0.030 Sum_probs=44.4
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCC------------CCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEE
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAG------------GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKR 118 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~------------~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vi 118 (136)
....+.+.++.|+++|++.|.+.=---.. ....|+.+.=+...-- -+..+++..+..+++.|++=+
T Consensus 13 ~~~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~--~n~~~l~~~L~~~~~~Gi~nv 90 (272)
T TIGR00676 13 GEENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIG--ATREEIREILREYRELGIRHI 90 (272)
T ss_pred hHHHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecC--CCHHHHHHHHHHHHHCCCCEE
Confidence 35788888999999999999884321110 0123444433333222 267899999999999999955
Q ss_pred E
Q psy12953 119 T 119 (136)
Q Consensus 119 l 119 (136)
+
T Consensus 91 L 91 (272)
T TIGR00676 91 L 91 (272)
T ss_pred E
Confidence 5
No 393
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=49.81 E-value=70 Score=25.44 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=47.6
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
......+.+.-...|+.|.+.+--.+..+..+ +.||.-.. .+.++-|.+++++.|+-|+-
T Consensus 55 vEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTS------PYsFQGlg-----e~gL~~l~~a~~~~Gl~vvt 114 (286)
T COG2876 55 VESEEQVRETAESVKAAGAKALRGGAFKPRTS------PYSFQGLG-----EEGLKLLKRAADETGLPVVT 114 (286)
T ss_pred cCCHHHHHHHHHHHHHcchhhccCCcCCCCCC------cccccccC-----HHHHHHHHHHHHHcCCeeEE
Confidence 46778888888899999999999888776643 33444333 37899999999999999987
No 394
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=49.80 E-value=69 Score=26.21 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=42.7
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC---CHHHHHHHHHHHHHCCCcEEE-eccCCCc
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG---DMHDFEILIEEAHSRGKPKRT-FREVTKS 126 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G---t~~~~~~lv~~ah~~Gi~vil-~nh~~~~ 126 (136)
+...+.....++-|+.-|..-....+.....++ + + .+..- -.+.++++++++|++|=++++ .+|.+..
T Consensus 33 ~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~-~-~----~~~~~~d~~i~~~~~l~d~vh~~Ga~i~~QL~H~Gr~ 104 (361)
T cd04747 33 QDVAAYYRRRAAGGVGLIITEGTAVDHPAASGD-P-N----VPRFHGEDALAGWKKVVDEVHAAGGKIAPQLWHVGAM 104 (361)
T ss_pred HHHHHHHHHHhcCCccEEEecceEeccccccCC-C-C----CCccCCHHHHHHHHHHHHHHHhcCCEEEEeccCCCCC
Confidence 455555566676788888776555432211111 0 0 01111 246899999999999999988 8887753
No 395
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=49.75 E-value=50 Score=26.74 Aligned_cols=55 Identities=7% Similarity=0.045 Sum_probs=33.8
Q ss_pred HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCc-EEE
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKP-KRT 119 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~-vil 119 (136)
.+.++.++++|++.|.+.- ... +..-...+. +-.+.++..+.++.+++.|+. |-+
T Consensus 103 ~e~l~~lk~~G~nrisiGv-QS~-------~d~vL~~l~-R~~~~~~~~~ai~~lr~~G~~~v~~ 158 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGV-QSM-------NNNILKQLN-RTHTIQDSKEAINLLHKNGIYNISC 158 (353)
T ss_pred HHHHHHHHHcCCCEEEEec-ccC-------CHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 3667788888888887643 111 011111222 235678888999999999876 544
No 396
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=49.41 E-value=92 Score=24.15 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=41.3
Q ss_pred HHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFR 121 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~n 121 (136)
.+.++...+..-+.+.|-|=-...- .++|.++. +..+.++..++.+|+.||+|-+|-
T Consensus 73 ~em~~ia~~~kP~~vtLVPEkr~E~TTegGldv~---------~~~~~l~~~i~~l~~~gI~VSLFi 130 (234)
T cd00003 73 EEMLEIALEVKPHQVTLVPEKREELTTEGGLDVA---------GQAEKLKPIIERLKDAGIRVSLFI 130 (234)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCccCCccchhh---------cCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3456677778888888888655433 44565553 335789999999999999999943
No 397
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=49.37 E-value=77 Score=26.53 Aligned_cols=58 Identities=10% Similarity=0.058 Sum_probs=37.3
Q ss_pred HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953 52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT 124 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~ 124 (136)
-....+.++.+.+.|+.++++.. .||... +++ ..+.=+++++.|+++||+|+=+|-++
T Consensus 74 ~~~~~~~l~e~~~~gv~~~vi~s--------~gf~e~-----g~~--g~~~~~~l~~~a~~~girvlGPnc~G 131 (447)
T TIGR02717 74 AKYVPQVVEECGEKGVKGAVVIT--------AGFKEV-----GEE--GAELEQELVEIARKYGMRLLGPNCLG 131 (447)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEC--------CCcccc-----Ccc--hHHHHHHHHHHHHHcCCEEEecCeee
Confidence 34456677889999999998743 121111 110 12223789999999999998755443
No 398
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=49.31 E-value=30 Score=22.67 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=24.5
Q ss_pred CCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 89 NYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 89 d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
|+..+|+ +.|+..+.+++++.|+++|+.++.
T Consensus 20 d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~ 51 (111)
T PF13378_consen 20 DIVQIDPTRCGGITEALRIAALAEAHGIPVMP 51 (111)
T ss_dssp SEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEeCchhcCCHHHHHHHHHHHHHhCCCEEe
Confidence 4445553 358899999999999999999999
No 399
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=49.29 E-value=40 Score=25.74 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=37.6
Q ss_pred HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC-CHHHHHHHHHHHHHCCCcEEEecc
Q psy12953 52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG-DMHDFEILIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G-t~~~~~~lv~~ah~~Gi~vil~nh 122 (136)
.+.+.+.++..++||+..|.+.+.. .++...+ +..+. ..+.++++++.|.++|+++.+=||
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~~~------~~~~~~~----~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAGYD------VYYEQAN----NETRRRFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcc------ccccccH----HHHHHHHHHHHHHHHHHHHHhCCEEEEeec
Confidence 3445667889999999999864210 1111100 00000 135689999999999999999443
No 400
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=49.23 E-value=30 Score=27.29 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHCCCcEEE
Q psy12953 98 GDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 98 Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
-+.++..+.++.||+.||++..
T Consensus 142 ~t~~~~l~~i~~a~~~Gi~~~s 163 (309)
T TIGR00423 142 LSSDEWLEVIKTAHRLGIPTTA 163 (309)
T ss_pred CCHHHHHHHHHHHHHcCCCcee
Confidence 3667878899999999998876
No 401
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=49.22 E-value=94 Score=23.03 Aligned_cols=47 Identities=15% Similarity=0.377 Sum_probs=31.4
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh 122 (136)
+...+.+..+...++++|.+.|... +.+...++.++++|+.|++.|.
T Consensus 42 ~~~~~~i~~l~~~~vdgiIi~~~~~-----------------------~~~~~~i~~~~~~~iPvV~~~~ 88 (273)
T cd06309 42 ENQISAIRSFIAQGVDVIILAPVVE-----------------------TGWDPVLKEAKAAGIPVILVDR 88 (273)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcc-----------------------ccchHHHHHHHHCCCCEEEEec
Confidence 3444556666677777777766431 1244567888999999999553
No 402
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=49.19 E-value=38 Score=26.54 Aligned_cols=86 Identities=15% Similarity=0.225 Sum_probs=48.8
Q ss_pred ccCCceEEEEecccccCcC-C-CCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCC--------CCCCccCCCC---C
Q psy12953 27 WWQTAIMYQIYPRSFRDVN-G-DGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD--------LGYDVSNYVD---V 93 (136)
Q Consensus 27 w~~~~~iY~v~~~~f~~~~-~-~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~--------~gY~~~d~~~---v 93 (136)
-+.+..+|..++...-... . ..+-.+....+.|..|++-|++.|.+.|.+--+... ..|. .+|.. -
T Consensus 30 ~fp~~~V~~AfTS~~I~~kl~~~~g~~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~-~~F~~i~~g 108 (262)
T PF06180_consen 30 AFPDYDVRRAFTSRIIRKKLAERDGIKIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYK-HDFKKIVLG 108 (262)
T ss_dssp CSTTSEEEEEES-HHHHHHHHHCHT-----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHC-CCSSEEEEE
T ss_pred HCCCCcEEEEchHHHHHHHHHhcCCCCcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhh-ccCCeEEec
Confidence 3556788888877653211 1 112457889999999999999999999987664310 0011 12322 3
Q ss_pred CCCCCC------HHHHHHHHHHHHHC
Q psy12953 94 DPLFGD------MHDFEILIEEAHSR 113 (136)
Q Consensus 94 d~~~Gt------~~~~~~lv~~ah~~ 113 (136)
.|-+++ .+|++++++++.+.
T Consensus 109 ~PLL~~~g~~~~~~D~~~va~aL~~~ 134 (262)
T PF06180_consen 109 RPLLYTMGQENSPEDYEAVAEALAEE 134 (262)
T ss_dssp --SCSS-----SHHHHHHHHHHHHCC
T ss_pred ccccccccccCChHHHHHHHHHHHHh
Confidence 577884 89999999999875
No 403
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=49.18 E-value=31 Score=26.16 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=37.6
Q ss_pred HHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 60 DHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 60 ~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.++..+|...+.+.+..........-...|..-+=..=|..++..+.++.||++|++++.
T Consensus 20 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~ 79 (268)
T TIGR00393 20 ATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIA 79 (268)
T ss_pred HHHHhcCCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEE
Confidence 467779999888765332211000011222222223347778999999999999999999
No 404
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.13 E-value=86 Score=23.48 Aligned_cols=48 Identities=15% Similarity=0.273 Sum_probs=29.7
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFR 121 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~n 121 (136)
+.....+.++.+.+.+++.|.+.|.- .+...+.++.+.+.||.|++++
T Consensus 40 d~~~~~~~i~~~~~~~vdgiii~~~~-----------------------~~~~~~~i~~~~~~~iPvV~~~ 87 (272)
T cd06313 40 DAVKQVAAIENMASQGWDFIAVDPLG-----------------------IGTLTEAVQKAIARGIPVIDMG 87 (272)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCC-----------------------hHHhHHHHHHHHHCCCcEEEeC
Confidence 33444555555566666666665531 1234566788888999999944
No 405
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=49.01 E-value=70 Score=25.66 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=37.8
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCC
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTK 125 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~ 125 (136)
+..+-.+.++.+++.|.|+=+..|=- ..|.-......=|. ...++|++|+++|++.|++.+.--|.+.
T Consensus 13 s~e~R~~l~~f~~~~kmN~YiYAPKd------Dpyhr~~Wre~Yp~-~el~~l~~L~~~a~~~~V~Fv~aisPg~ 80 (306)
T PF07555_consen 13 SHEDRLDLIRFLGRYKMNTYIYAPKD------DPYHRSKWREPYPE-EELAELKELADAAKANGVDFVYAISPGL 80 (306)
T ss_dssp -HHHHHHHHHHHHHTT--EEEE--TT-------TTTTTTTTS---H-HHHHHHHHHHHHHHHTT-EEEEEEBGTT
T ss_pred CHHHHHHHHHHHHHcCCceEEECCCC------ChHHHhhhcccCCH-HHHHHHHHHHHHHHHcCCEEEEEECccc
Confidence 35566677889999999988777622 12222222111110 1257899999999999999998334333
No 406
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=48.83 E-value=68 Score=26.39 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=16.7
Q ss_pred HHHhHHHHHHcCCcEEEEcCCccC
Q psy12953 55 ITEKLDHFVDLGIESLWIQPFYPA 78 (136)
Q Consensus 55 l~~~l~~l~~lG~~~I~l~Pi~~~ 78 (136)
+.+.+++++++|++.+.+.|+.+.
T Consensus 183 ~~e~~~~~~~lg~~~~~~~p~~~~ 206 (412)
T PRK13745 183 PLDFYHFFKELDCHYIQFAPIVER 206 (412)
T ss_pred HHHHHHHHHHcCCCeEEEEeccCc
Confidence 344455777788888888887763
No 407
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=48.74 E-value=65 Score=25.29 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=38.7
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCc
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKS 126 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~ 126 (136)
.+.++.+..+++||..|..+=+++. +-+.+.+.++++||..+|+|-..-+
T Consensus 16 pFl~Rf~aaa~aGF~~ve~lfPyd~-----------------------~~~~i~~~l~~~~L~~~Lfn~pagD 65 (260)
T COG3622 16 PFLERFAAAAKAGFRGVEFLFPYDY-----------------------DAEELKARLDFNGLTQVLFNLPAGD 65 (260)
T ss_pred cHHHHHHHHHHcCCceEEEcCCCcc-----------------------cHHHHHHHHHHcCCceeeeCCCCcc
Confidence 4578888999999999987644432 3567788999999999997765544
No 408
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=48.58 E-value=42 Score=27.44 Aligned_cols=100 Identities=13% Similarity=0.229 Sum_probs=0.0
Q ss_pred cCCCCCccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccC-------CCCCCCCCccCCC
Q psy12953 19 QVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-------GGADLGYDVSNYV 91 (136)
Q Consensus 19 ~~~~~~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~-------~~~~~gY~~~d~~ 91 (136)
..+.+.+.-|.+..+||++-..- -+++.-.+-.+|.++.|+ ++++.+|.. .-.-.-|-+.++.
T Consensus 64 ~~~~~i~~~~~~~slyel~e~~~--------~p~e~~~~Lke~a~~~Gi--~~~SSPfd~~svd~l~~~~~~ayKIaS~E 133 (347)
T COG2089 64 NVPFKIKTLWDKVSLYELYEEAE--------TPLEWHAQLKEYARKRGI--IFFSSPFDLTAVDLLESLNPPAYKIASGE 133 (347)
T ss_pred CCccccccccccccHHHHHHHhc--------CCHHHHHHHHHHHHHcCe--EEEecCCCHHHHHHHHhcCCCeEEecCcc
Q ss_pred CCCCCC-----------------CCHHHHHHHHHHHHHCCCc--EEEeccCCCccCCC
Q psy12953 92 DVDPLF-----------------GDMHDFEILIEEAHSRGKP--KRTFREVTKSFANN 130 (136)
Q Consensus 92 ~vd~~~-----------------Gt~~~~~~lv~~ah~~Gi~--vil~nh~~~~~~~~ 130 (136)
..|..+ .+.+|+++.++.++++|-. ++| |....+|.+
T Consensus 134 ~~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LL--hC~s~YPap 189 (347)
T COG2089 134 INDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNPDIALL--HCTSAYPAP 189 (347)
T ss_pred ccChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEE--EecCCCCCC
No 409
>PRK08508 biotin synthase; Provisional
Probab=48.56 E-value=51 Score=25.70 Aligned_cols=52 Identities=17% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcE
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPK 117 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~v 117 (136)
.+.+..|++.|++.+.. +.--...-|..+.+ =.++++-.+.++.||+.||++
T Consensus 102 ~e~l~~Lk~aGld~~~~---------~lEt~~~~~~~i~~-~~~~~~~l~~i~~a~~~Gi~v 153 (279)
T PRK08508 102 VEQLKELKKAGIFSYNH---------NLETSKEFFPKICT-THTWEERFQTCENAKEAGLGL 153 (279)
T ss_pred HHHHHHHHHcCCCEEcc---------cccchHHHhcCCCC-CCCHHHHHHHHHHHHHcCCee
No 410
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=48.56 E-value=28 Score=27.82 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953 99 DMHDFEILIEEAHSRGKPKRTFREVT 124 (136)
Q Consensus 99 t~~~~~~lv~~ah~~Gi~vil~nh~~ 124 (136)
+.++|+++++.||++|+.|.+ |..
T Consensus 192 ~~~~l~~~~~~A~~~g~~v~~--H~~ 215 (411)
T cd01298 192 SDELLREVAELAREYGVPLHI--HLA 215 (411)
T ss_pred CHHHHHHHHHHHHHcCCcEEE--Eec
Confidence 578999999999999999999 764
No 411
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=48.55 E-value=87 Score=25.48 Aligned_cols=23 Identities=4% Similarity=-0.162 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHCCCcEEEeccCC
Q psy12953 102 DFEILIEEAHSRGKPKRTFREVT 124 (136)
Q Consensus 102 ~~~~lv~~ah~~Gi~vil~nh~~ 124 (136)
+++++++.||++|+.+++++-.+
T Consensus 156 ~l~~i~~l~~~~g~~livDe~~~ 178 (392)
T PLN03227 156 PLKELVALKEEFHYRLILDESFS 178 (392)
T ss_pred CHHHHHHHHHHcCCEEEEECccc
Confidence 48899999999999999955443
No 412
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=48.46 E-value=45 Score=26.15 Aligned_cols=55 Identities=18% Similarity=0.096 Sum_probs=39.8
Q ss_pred CCHHHHHHhHHHHHHcCC--cEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGI--ESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~--~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
-++..+.+.++..+.-+. ..|++..++ +|. |. .=+.++++++++.|.++|+-|+.
T Consensus 130 ~d~~~l~~~l~~~~~~~~~~~~v~~~~p~-nPt---G~-----------~~~~~~l~~l~~~~~~~~~~ii~ 186 (363)
T PF00155_consen 130 LDPEALEEALDELPSKGPRPKAVLICNPN-NPT---GS-----------VLSLEELRELAELAREYNIIIIV 186 (363)
T ss_dssp ETHHHHHHHHHTSHTTTETEEEEEEESSB-TTT---TB-----------B--HHHHHHHHHHHHHTTSEEEE
T ss_pred ccccccccccccccccccccceeeecccc-ccc---cc-----------ccccccccchhhhhcccccceee
Confidence 678888888888777664 666665443 232 10 11478999999999999999999
No 413
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=48.45 E-value=38 Score=28.30 Aligned_cols=51 Identities=16% Similarity=0.053 Sum_probs=27.9
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCc
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKP 116 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~ 116 (136)
+.++.++++|++.|.+..=.-. ..-+..++. -.+.++..+.++.+++.|++
T Consensus 152 e~l~~lk~~G~~risiGvqS~~--------~~~l~~l~r-~~~~~~~~~ai~~l~~~G~~ 202 (455)
T TIGR00538 152 DVIDALRDEGFNRLSFGVQDFN--------KEVQQAVNR-IQPEEMIFELMNHAREAGFT 202 (455)
T ss_pred HHHHHHHHcCCCEEEEcCCCCC--------HHHHHHhCC-CCCHHHHHHHHHHHHhcCCC
Confidence 5566777777777776531100 111112222 24566777777777777774
No 414
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=48.32 E-value=1e+02 Score=23.54 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=30.9
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh 122 (136)
+...+.++.+.+.++++|.+.|+. .+.+...++++.++|+.|+++|.
T Consensus 43 ~~~~~~i~~~~~~~~DgiIi~~~~-----------------------~~~~~~~~~~~~~~~iPvV~v~~ 89 (298)
T cd06302 43 AGQVQIIEDLIAQGVDAIAVVPND-----------------------PDALEPVLKKAREAGIKVVTHDS 89 (298)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCC-----------------------HHHHHHHHHHHHHCCCeEEEEcC
Confidence 444455556666667777765532 23467778888899999998543
No 415
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=48.23 E-value=47 Score=28.12 Aligned_cols=22 Identities=5% Similarity=-0.130 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHCCCcEEE
Q psy12953 98 GDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 98 Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.++..+.++.+++.||.+..
T Consensus 320 ~t~~~~~~ai~~l~~~Gi~~~~ 341 (497)
T TIGR02026 320 TTTSTNKEAIRLLRQHNILSEA 341 (497)
T ss_pred CCHHHHHHHHHHHHHCCCcEEE
Confidence 3678899999999999998776
No 416
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=48.17 E-value=76 Score=26.12 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=46.3
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCC-CCCCCccCCCCCCCCCC--------------CHHHHHHHHHHHHHCC---
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGA-DLGYDVSNYVDVDPLFG--------------DMHDFEILIEEAHSRG--- 114 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~-~~gY~~~d~~~vd~~~G--------------t~~~~~~lv~~ah~~G--- 114 (136)
+.+.++..-++++|+++..+...++.+.. --|---.|..-+|+=.| +.++|+++++.++.-|
T Consensus 108 ~~~~a~~~al~~~Gir~~~~~g~~~~p~~t~t~~~~~d~~~~d~iiG~~~ia~sd~r~~~~~~~~l~~~~~~~~~~g~~~ 187 (389)
T TIGR01975 108 ESLLAKARALEEEGISCYMLTGAYHVPSRTITGSVESDLLLIDKVIGVGEIAISDHRSAQPTVEHLTNMAAEARVGGLLG 187 (389)
T ss_pred hhHHHHHHHHHHhCCEEEEEcccccCCCcccccchhhheeeehhhcccceEEEccCcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 34667888999999999999887754321 00111122222332222 3689999999999999
Q ss_pred -Cc--EEEeccCCC
Q psy12953 115 -KP--KRTFREVTK 125 (136)
Q Consensus 115 -i~--vil~nh~~~ 125 (136)
.. |++ |++.
T Consensus 188 ~~~g~~~v--H~g~ 199 (389)
T TIGR01975 188 GKPGIVNF--HVGD 199 (389)
T ss_pred CCCcEEEE--EeCC
Confidence 77 777 7764
No 417
>PRK10060 RNase II stability modulator; Provisional
Probab=48.06 E-value=97 Score=27.14 Aligned_cols=63 Identities=14% Similarity=0.213 Sum_probs=43.4
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCC--------ccCCCCCCCCC--------CCHHHHHHHHHHHHHC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYD--------VSNYVDVDPLF--------GDMHDFEILIEEAHSR 113 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~--------~~d~~~vd~~~--------Gt~~~~~~lv~~ah~~ 113 (136)
.+...+.+.+..|+++||.-- |--+ +.||. +.|+-.+|..| ....-++.+++.||+.
T Consensus 538 ~~~~~~~~~l~~L~~~G~~ia-lDdf------Gtg~ssl~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~l 610 (663)
T PRK10060 538 ENEELALSVIQQFSQLGAQVH-LDDF------GTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQAL 610 (663)
T ss_pred cCHHHHHHHHHHHHHCCCEEE-EECC------CCchhhHHHHHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHC
Confidence 556777888899999998643 2211 22333 45566666544 2345689999999999
Q ss_pred CCcEEE
Q psy12953 114 GKPKRT 119 (136)
Q Consensus 114 Gi~vil 119 (136)
|++|++
T Consensus 611 g~~viA 616 (663)
T PRK10060 611 NLQVIA 616 (663)
T ss_pred CCcEEE
Confidence 999999
No 418
>PLN02509 cystathionine beta-lyase
Probab=47.85 E-value=28 Score=29.45 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953 96 LFGDMHDFEILIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 96 ~~Gt~~~~~~lv~~ah~~Gi~vil~nh 122 (136)
-.|...+++++++.||++|+.|+++|-
T Consensus 229 PtG~i~Dl~~I~~lAk~~g~~lIVD~A 255 (464)
T PLN02509 229 PRQQISDIRKIAEMAHAQGALVLVDNS 255 (464)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEECC
Confidence 357789999999999999999999655
No 419
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=47.73 E-value=70 Score=24.87 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=35.5
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFR 121 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~n 121 (136)
+.++...+..-+.+-|-|--.... .++|.++... .+.++..++.+|+.||+|-+|-
T Consensus 75 e~~~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~---------~~~l~~~i~~L~~~gIrvSLFi 131 (239)
T PF03740_consen 75 EMVDIALKVKPDQVTLVPEKREELTTEGGLDVAGN---------RDRLKPVIKRLKDAGIRVSLFI 131 (239)
T ss_dssp HHHHHHHHH--SEEEEE--SGGGBSTTSSB-TCGG---------HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHhCCcCEEEECCCCCCCcCCCcCChhhcC---------HHHHHHHHHHHHhCCCEEEEEe
Confidence 344566667778888888655433 4566555433 5889999999999999999943
No 420
>TIGR03842 F420_CPS_4043 F420-dependent oxidoreductase, CPS_4043 family. This model represents a family of putative F420-dependent oxidoreductases, fairly closely related to 5,10-methylenetetrahydromethanopterin reductase (mer, TIGR03555), both within the bacterial luciferase-like monoxygenase (LLM) family. A fairly deep split (to about 40 % sequence identity) in the present family separates a strictly Actinobacterial clade from an alpha/beta/gamma-proteobacterial clade, in which the member is often the only apparent F420-dependent LLM family member. The specific function, and whether Actinobacterial and Proteobacterial clades differ in function, are unknown.
Probab=47.60 E-value=27 Score=27.80 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=24.3
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCC
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPF 75 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi 75 (136)
.|+..++.++|..+.++|++++.+.+.
T Consensus 285 ~Gtpe~v~e~l~~~~~~Gv~~~~l~~~ 311 (330)
T TIGR03842 285 LGPAEAHIEKLRELRALGVDQFAIYLQ 311 (330)
T ss_pred CCCHHHHHHHHHHHHHcCCceEEEeCC
Confidence 599999999999999999999988754
No 421
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=47.57 E-value=1e+02 Score=21.98 Aligned_cols=55 Identities=11% Similarity=0.055 Sum_probs=36.5
Q ss_pred HHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 60 DHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 60 ~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..+..+|..+..+...... .....|.--+=+.-|...+..++++.|+++|++++.
T Consensus 53 ~~l~~~g~~~~~~~~~~~~-----~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~ 107 (179)
T cd05005 53 MRLMHLGLNVYVVGETTTP-----AIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVL 107 (179)
T ss_pred HHHHhCCCeEEEeCCCCCC-----CCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 4677789988887543210 111223222334446778999999999999999999
No 422
>PRK00955 hypothetical protein; Provisional
Probab=47.50 E-value=42 Score=29.66 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=26.9
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGG 80 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~ 80 (136)
-+.+++.+.+++++++|++.+.+.+..+.+.
T Consensus 491 ETeEDf~et~eflkel~~~~~qV~~fTP~PG 521 (620)
T PRK00955 491 STLEDAIELAEYTKDLGYQPEQVQDFYPTPG 521 (620)
T ss_pred CCHHHHHHHHHHHHHcCCCcceeeeeecCCC
Confidence 5778888889999999999999988887765
No 423
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=47.43 E-value=94 Score=22.98 Aligned_cols=46 Identities=24% Similarity=0.458 Sum_probs=29.1
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-....+.+..+.+.++++|.+.|... +.+.+.++.++++|+.|++
T Consensus 45 ~~~~~~~~~~~~~~~~vdgiIi~~~~~-----------------------~~~~~~l~~~~~~~iPvv~ 90 (272)
T cd06300 45 DVAQQIADIRNLIAQGVDAIIINPASP-----------------------TALNPVIEEACEAGIPVVS 90 (272)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCh-----------------------hhhHHHHHHHHHCCCeEEE
Confidence 445566667777777888888877421 1234455666667777666
No 424
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=47.39 E-value=31 Score=28.30 Aligned_cols=44 Identities=14% Similarity=0.365 Sum_probs=30.4
Q ss_pred HHHHHHhHHHHHHcCCcEEEE--cCCccCC-----------CCCCCCCccCCCCCCC
Q psy12953 52 MRGITEKLDHFVDLGIESLWI--QPFYPAG-----------GADLGYDVSNYVDVDP 95 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l--~Pi~~~~-----------~~~~gY~~~d~~~vd~ 95 (136)
....++.|..|++.||.+|.. ||++.-. +.-++|+-.||.+-|+
T Consensus 82 Ieny~~tirnLa~~GI~vvCYNfMpv~dWtRTdl~~~l~~gs~alrfd~~~~~a~~~ 138 (362)
T COG1312 82 IENYKQTIRNLARAGIKVVCYNFMPVFDWTRTDLEYPLPDGSEALRFDKADFAAFDL 138 (362)
T ss_pred HHHHHHHHHHHHhcCCcEEEeccccccCccccceeeecCCCCeeEeeeHhhhhcccc
Confidence 444566688999999999986 8998752 2235566666665444
No 425
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=47.35 E-value=60 Score=26.06 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=34.4
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+++.+.+.+. + .+.+|++.|++... |..+ -+.+.++++.+.|+++|+-+|.
T Consensus 164 d~~~l~~~l~---~-~~~avivep~~~~~----G~~~----------~~~~~l~~l~~l~~~~g~~lI~ 214 (389)
T PRK01278 164 DIEALKAAIT---P-NTAAILIEPIQGEG----GIRP----------APDEFLKGLRQLCDENGLLLIF 214 (389)
T ss_pred CHHHHHHhhC---C-CeEEEEEecccCCC----CCcC----------CCHHHHHHHHHHHHHcCCEEEE
Confidence 4455544432 2 57899999985322 1001 1357899999999999999999
No 426
>PRK07050 cystathionine beta-lyase; Provisional
Probab=47.24 E-value=31 Score=28.23 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953 97 FGDMHDFEILIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 97 ~Gt~~~~~~lv~~ah~~Gi~vil~nh 122 (136)
.|...+++++.+.||++|+.|+++|-
T Consensus 163 ~~~~~di~~I~~ia~~~gi~livD~a 188 (394)
T PRK07050 163 TMEVPDVPAITAAARARGVVTAIDNT 188 (394)
T ss_pred CccHhhHHHHHHHHHHcCCEEEEECC
Confidence 46789999999999999999999554
No 427
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=47.12 E-value=32 Score=28.59 Aligned_cols=63 Identities=10% Similarity=0.026 Sum_probs=41.3
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCC--------CCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGA--------DLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGK 115 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~--------~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi 115 (136)
..+.+-+.|++..|++.-||.|--..--. ..-=--..-..+|..-|+.+.++++.+-|+++|+
T Consensus 102 ~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i 172 (386)
T COG1104 102 PAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGI 172 (386)
T ss_pred HHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCC
Confidence 34566677887779999888774422000 0000011123378899999999999999999993
No 428
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=47.08 E-value=89 Score=29.24 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=39.7
Q ss_pred CHHHHHHhHHHHHHcC--CcEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLG--IESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG--~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-+.+.+.++.+++.| +++||+.-=+- .||.. +..|+ +|- +.++|++.+|++|++++.
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwlDidYm-----~g~~~---FTwD~~rFP---dP~~mv~~Lh~~G~kvv~ 259 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWMDIDYM-----DGFRC---FTFDKERFP---DPKGLADDLHSIGFKAIW 259 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEehhhh-----cCCCc---eeECcccCC---CHHHHHHHHHHCCCEEEE
Confidence 4567888888888866 47788763221 23333 23343 555 458999999999999988
No 429
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=47.03 E-value=1.3e+02 Score=23.79 Aligned_cols=65 Identities=11% Similarity=0.012 Sum_probs=39.9
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC------------------CCCCCHHHHHHHHHHHH
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD------------------PLFGDMHDFEILIEEAH 111 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd------------------~~~Gt~~~~~~lv~~ah 111 (136)
..++.+.+.+...++.|.+-|.++=.+- .||...++.... ...-..+.++.|.+.|+
T Consensus 24 ~Nl~~i~~~i~~A~~~gadLIVfPE~~l-----tGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lAr 98 (299)
T cd07567 24 KNLDIYEEIIKSAAKQGADIIVFPEDGL-----TGFIFTRFVIYPFLEDVPDPEVNWNPCLDPDRFDYTEVLQRLSCAAR 98 (299)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEcccccc-----CCCCCCccccCchhcccccccccccccccccccCchHHHHHHHHHHH
Confidence 4566677777777788988766644443 244433322100 01112356888999999
Q ss_pred HCCCcEEE
Q psy12953 112 SRGKPKRT 119 (136)
Q Consensus 112 ~~Gi~vil 119 (136)
++|+-|++
T Consensus 99 ~~~i~Iv~ 106 (299)
T cd07567 99 ENSIYVVA 106 (299)
T ss_pred HhCeEEEe
Confidence 99999988
No 430
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=47.00 E-value=18 Score=29.26 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953 98 GDMHDFEILIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 98 Gt~~~~~~lv~~ah~~Gi~vil~nh 122 (136)
|...+++++++.||++|+.|+++|-
T Consensus 150 g~~~di~~I~~la~~~gi~vvvD~t 174 (364)
T PRK07269 150 MVEFDIEKVAKLAHAKGAKVIVDNT 174 (364)
T ss_pred CeeeCHHHHHHHHHHcCCEEEEECC
Confidence 5566899999999999999999665
No 431
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=46.81 E-value=45 Score=25.44 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=46.0
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCC---CCCCCCCCCHHHHHHHHHHHHHCCCcEE
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNY---VDVDPLFGDMHDFEILIEEAHSRGKPKR 118 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~---~~vd~~~Gt~~~~~~lv~~ah~~Gi~vi 118 (136)
.|+...+.+.|+.|+++..+++.+ | +|||...|. ..++|.--..+++.+-++++.++|...+
T Consensus 138 ~~~~~~~~~Sl~~l~~l~~~~~i~-p-------GH~~~~~n~~fa~~~~p~~~~l~~~~~~~~~~~~~~~~t~ 202 (248)
T TIGR03413 138 EGTPEQMYDSLQRLAALPDDTLVY-C-------AHEYTLSNLRFALTVEPDNPALQERLKEVEALRAQGQPTL 202 (248)
T ss_pred CCCHHHHHHHHHHHHcCCCCeEEE-C-------CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHHCCCCCC
Confidence 478888998899999998776433 2 477777664 3577777767778888888888887554
No 432
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=46.66 E-value=45 Score=26.35 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=29.6
Q ss_pred ceEEEE--ecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcC
Q psy12953 31 AIMYQI--YPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQP 74 (136)
Q Consensus 31 ~~iY~v--~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~P 74 (136)
.+++.+ +|..|... ++.......+.+++..|+++|++.+++.-
T Consensus 50 ~vVvTf~~~P~qf~~~-~~~~~~~~t~e~~~~ll~~~GvD~v~~p~ 94 (281)
T PRK00380 50 IVVVSIFVNPLQFGPN-EDLDRYPRTLEADLALLEAAGVDLVFAPS 94 (281)
T ss_pred EEEEeCCCCHHHhCCC-ccccccCCCHHHHHHHHHHcCCCEEEeCC
Confidence 455544 66666532 22234567789999999999999998863
No 433
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=46.56 E-value=71 Score=25.75 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=34.7
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
|.|+.+.+.+..+++.|+.......+.. .+.+++.++++.+++.|++.+-
T Consensus 138 g~f~~~~~~i~~l~~~g~~v~i~~vv~~--------------------~N~~~i~~~~~~~~~lgv~~i~ 187 (378)
T PRK05301 138 GAFAKKLAVARLVKAHGYPLTLNAVIHR--------------------HNIDQIPRIIELAVELGADRLE 187 (378)
T ss_pred chHHHHHHHHHHHHHCCCceEEEEEeec--------------------CCHHHHHHHHHHHHHcCCCEEE
Confidence 5788888888888888876433332221 1246788888888888888665
No 434
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=46.43 E-value=24 Score=29.23 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=38.5
Q ss_pred HHHHcCCcEEEEcCCccCCCC---------CCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 61 HFVDLGIESLWIQPFYPAGGA---------DLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 61 ~l~~lG~~~I~l~Pi~~~~~~---------~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..++.|++..++..- +.+.. +..=...-+..+....|+..+++++++.||++|..|++
T Consensus 131 ~~~~~Ga~v~~i~~~-~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~V 197 (405)
T COG0520 131 LAKRTGAKVRVIPLD-DDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLV 197 (405)
T ss_pred HHHhcCcEEEEEecC-CCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEE
Confidence 444568877777644 32211 00111233455667789999999999999999999999
No 435
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=46.43 E-value=27 Score=32.15 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHCCCcEEE
Q psy12953 100 MHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.|+++|++++++||+||-
T Consensus 807 ~~~l~~~i~~~~~~~~~~ig 826 (912)
T TIGR02171 807 MNSLKAFIDETAKKGVKVIG 826 (912)
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 57899999999999999998
No 436
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=46.43 E-value=74 Score=23.66 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=33.4
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEe
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTF 120 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~ 120 (136)
+.....+.++.+.+ ++++|.+.|... +++.+.+++++++|+.|+++
T Consensus 44 ~~~~~~~~i~~~~~-~vdgiii~~~~~-----------------------~~~~~~i~~~~~~~ipvV~~ 89 (275)
T cd06307 44 DPAALAAALLRLGA-RSDGVALVAPDH-----------------------PQVRAAVARLAAAGVPVVTL 89 (275)
T ss_pred CHHHHHHHHHHHHh-cCCEEEEeCCCc-----------------------HHHHHHHHHHHHCCCcEEEE
Confidence 34555667777777 899998876431 24567789999999999983
No 437
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=46.41 E-value=25 Score=26.90 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=47.5
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccC--------------CC--CCCCC-----------CccCCCCCCCC-CCCHH
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPA--------------GG--ADLGY-----------DVSNYVDVDPL-FGDMH 101 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~--------------~~--~~~gY-----------~~~d~~~vd~~-~Gt~~ 101 (136)
-+.++..+.+..+.+.|+..|.= |+... +- ...-+ ...|...+|+. .|+..
T Consensus 140 ~~~~~a~~~~~~l~~~~i~~iEe-P~~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 218 (265)
T cd03315 140 WTPKQAIRALRALEDLGLDYVEQ-PLPADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLT 218 (265)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEC-CCCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHH
Confidence 45677777788888889888874 43221 00 00001 13445567755 59999
Q ss_pred HHHHHHHHHHHCCCcEEE
Q psy12953 102 DFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 102 ~~~~lv~~ah~~Gi~vil 119 (136)
+.+++++.|+++|+++++
T Consensus 219 ~~~~~~~~A~~~gi~~~~ 236 (265)
T cd03315 219 KAQRVLAVAEALGLPVMV 236 (265)
T ss_pred HHHHHHHHHHHcCCcEEe
Confidence 999999999999999999
No 438
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=46.37 E-value=58 Score=24.92 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHCCCcEEE
Q psy12953 99 DMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 99 t~~~~~~lv~~ah~~Gi~vil 119 (136)
+.++++++++.||++|+.+++
T Consensus 150 ~~~~l~~l~~~~~~~~~~~iv 170 (350)
T cd00609 150 SEEELEELAELAKKHGILIIS 170 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEEE
Confidence 357899999999999999999
No 439
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=46.33 E-value=52 Score=27.57 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=23.7
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCc
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFY 76 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~ 76 (136)
++..++.++.+++++.|.+++.+.+..
T Consensus 221 ~~~~em~~ra~~~~~~G~~~~mv~~~~ 247 (412)
T TIGR03326 221 APVREMERRAELVADLGGQYVMVDVVV 247 (412)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEeec
Confidence 567899999999999999999988865
No 440
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=46.28 E-value=68 Score=25.38 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=36.1
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcC-CccCCC-CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQP-FYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~P-i~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..++.+.+.|.|.++.||.---+++ +++..+ ...+|+.... =.++|+++=+.++++|||+-+
T Consensus 42 ~Nl~~l~~~L~~n~~~~I~~yRisS~liP~ashp~~~~~~~~~--------~~~~l~~iG~~~~~~~iRls~ 105 (275)
T PF03851_consen 42 QNLEDLLRILEYNIAHGIRFYRISSDLIPLASHPEVGWDWEEE--------FAEELAEIGDLAKENGIRLSM 105 (275)
T ss_dssp HHHHHHHHHHHHHHHTT--EEE--TTSSTTTTSTT--S-HHHH--------HHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEecCcccCCCCCCcccccchHHH--------HHHHHHHHHHHHHHcCCeEEe
Confidence 4467778889999999988888754 332221 1122222111 126788888889999999999
No 441
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=46.27 E-value=21 Score=28.74 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953 98 GDMHDFEILIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 98 Gt~~~~~~lv~~ah~~Gi~vil~nh 122 (136)
|...+++++++.||++|+.++++|-
T Consensus 139 g~~~dl~~i~~la~~~g~~livD~t 163 (369)
T cd00614 139 LKVVDIEAIAELAHEHGALLVVDNT 163 (369)
T ss_pred CeecCHHHHHHHHHHcCCEEEEECC
Confidence 5556789999999999999999664
No 442
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=46.25 E-value=54 Score=25.41 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=38.8
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+.|..+++-|+.++.|.=++.... ...-|..-..-.|.++..+|++.|.+|+.
T Consensus 158 reL~~~~~~G~ra~vlf~v~r~d~----------~~F~P~~e~Dp~fa~~l~~A~~~GVev~~ 210 (235)
T COG1489 158 RELERLAKEGYRAVVLFLVLRSDI----------TRFSPNREIDPKFAELLREAIKAGVEVLA 210 (235)
T ss_pred HHHHHHHHcCCceEEEEEEecCCC----------cEECcccccCHHHHHHHHHHHHcCCEEEE
Confidence 346778889999999988776432 22334444445678999999999999988
No 443
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=46.24 E-value=22 Score=27.84 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=22.8
Q ss_pred CCCC-CCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 93 VDPL-FGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 93 vd~~-~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
|.|- .|+.+..+++|+.||..|+.-++
T Consensus 235 IKPTL~GSl~r~~eli~qAh~lGl~AVI 262 (321)
T COG1441 235 IKPTLTGSLQRVRELVQQAHALGLTAVI 262 (321)
T ss_pred ecccchhhHHHHHHHHHHHHhcCceeEe
Confidence 4444 37889999999999999999887
No 444
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=45.91 E-value=52 Score=27.10 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=23.8
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCc
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFY 76 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~ 76 (136)
++..++.++.++++++|.+++.+.+..
T Consensus 204 ~~~~em~~ra~~~~~~G~~~~mv~~~~ 230 (366)
T cd08148 204 AGTFEIIERAERALELGANMLMVDVLT 230 (366)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeccc
Confidence 556899999999999999999988865
No 445
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=45.91 E-value=31 Score=28.34 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953 100 MHDFEILIEEAHSRGKPKRT-FREVT 124 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil-~nh~~ 124 (136)
.+.|++++++.|++|=++++ .+|.+
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL~H~G 107 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQLWHAG 107 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEeccCc
Confidence 56899999999999999999 99998
No 446
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=45.84 E-value=21 Score=24.16 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.8
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCC
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAG 79 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~ 79 (136)
.+.+.++.+++.|++.|.+.|.+-.+
T Consensus 47 ~l~~~l~~l~~~g~~~v~vvPlfl~~ 72 (126)
T PRK00923 47 TIPEALKKLIGTGADKIIVVPVFLAH 72 (126)
T ss_pred CHHHHHHHHHHcCCCEEEEEchhhcc
Confidence 67788889999999999999998664
No 447
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=45.80 E-value=71 Score=26.41 Aligned_cols=40 Identities=10% Similarity=0.030 Sum_probs=31.7
Q ss_pred HHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 59 LDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 59 l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.+++.+++.|++...... .++.+++++.|++.|++|.+
T Consensus 181 ~~~i~~~~id~ViIa~p~~~---------------------~~~~~~ll~~~~~~gv~V~~ 220 (445)
T TIGR03025 181 VELVRAHRVDEVIIALPLSE---------------------EARILELLLQLRDLGVDVRL 220 (445)
T ss_pred HHHHHhCCCCEEEEecCccc---------------------HHHHHHHHHHHHhcCCEEEE
Confidence 35788899999998643211 35789999999999999988
No 448
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=45.70 E-value=59 Score=25.58 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=38.8
Q ss_pred HHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC-C-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 60 DHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD-P-LFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 60 ~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~-~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+|+.+-.++.|.|.=+...+. .|+-..||-... + .++.-.++.+-|+.|+++|+||++
T Consensus 18 ~~C~~~~~dii~i~Fl~~~~~--~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlL 77 (280)
T cd02877 18 EYCDTGNYDIVNISFLNVFGS--GGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLL 77 (280)
T ss_pred HHhCCCCccEEEEEeEcccCC--CCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEE
Confidence 477777899998866555443 333344443322 1 112346899999999999999999
No 449
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=45.53 E-value=61 Score=27.09 Aligned_cols=50 Identities=24% Similarity=0.149 Sum_probs=28.2
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGK 115 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi 115 (136)
+.++.++++|++.|.+.-=.- +..-...++ +..+.++..+.++.+++.|+
T Consensus 152 e~l~~l~~aG~~risiGvqS~--------~~~~L~~l~-r~~~~~~~~~ai~~l~~~G~ 201 (453)
T PRK09249 152 EMLDALRELGFNRLSLGVQDF--------DPEVQKAVN-RIQPFEFTFALVEAARELGF 201 (453)
T ss_pred HHHHHHHHcCCCEEEECCCCC--------CHHHHHHhC-CCCCHHHHHHHHHHHHHcCC
Confidence 455666677777666643110 011111222 23567788888888888887
No 450
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=45.47 E-value=36 Score=26.64 Aligned_cols=54 Identities=11% Similarity=0.052 Sum_probs=32.7
Q ss_pred CCcEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 66 GIESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 66 G~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
|...|-.-|.|.+-....|........+.+ .=-+..+++++++.++++|+++++
T Consensus 177 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if 231 (287)
T cd01137 177 KRKLVTSEGAFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVF 231 (287)
T ss_pred cCEEEEecccHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 344555566555422223433333222222 223589999999999999999998
No 451
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=45.41 E-value=27 Score=23.07 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=38.4
Q ss_pred HHHHHhH-HHHHHcCCcEEEEcCCccC-CCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 53 RGITEKL-DHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 53 ~~l~~~l-~~l~~lG~~~I~l~Pi~~~-~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..+...+ -+++++|.......+..+. ...-......|.--+=..=|...+..+.++.|+++|.+|++
T Consensus 17 ~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~ 85 (131)
T PF01380_consen 17 YGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKERGAPVIL 85 (131)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhcCCeEEE
Confidence 3444433 3667777777666554331 10001111222222222446678999999999999999998
No 452
>KOG3340|consensus
Probab=45.34 E-value=66 Score=26.60 Aligned_cols=66 Identities=12% Similarity=-0.082 Sum_probs=41.1
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
-..+..+-+++.|+.-|.|..=+.-+..-|+-..++...---.=+-.+-.++|..+++++||+.=|
T Consensus 103 nA~qWa~lfq~sGaryvVLTsKHHeGFtlWPS~~SwnwNS~dvgpkrDiV~EL~~A~rk~dirfGL 168 (454)
T KOG3340|consen 103 NASQWADLFQDSGARYVVLTSKHHEGFTLWPSEYSWNWNSMDVGPKRDIVGELASAIRKRDIRFGL 168 (454)
T ss_pred CHHHHHHHHHhcCceEEEEeecccCceecCCCcCcccccccccCccccHHHHHHHHHHhcCcceeE
Confidence 345667889999999999987665433222211222211111112346688999999999998766
No 453
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=45.33 E-value=26 Score=29.72 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=45.7
Q ss_pred HHhHHHHHHcCCcEEEEcCCccC--CC-CCCCCCccCCCCCC-CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPA--GG-ADLGYDVSNYVDVD-PLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~--~~-~~~gY~~~d~~~vd-~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.++.|+++|..-+.++|+-+. |. .+.-|=+.-|-.+- .++...+.+++=++++++.|..|+.
T Consensus 261 ~~nl~~Lr~~GAelv~FSPL~D~~lP~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piya 328 (451)
T COG1797 261 PENLELLREAGAELVFFSPLADEELPPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYA 328 (451)
T ss_pred HHHHHHHHHCCCEEEEeCCcCCCCCCCCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEE
Confidence 56788999999999999999864 21 22223333343332 3344567799999999999999987
No 454
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=45.17 E-value=26 Score=30.78 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=26.9
Q ss_pred CCCCCC-----HHHHHHHHHHHHHCCCcEEE-eccCCCc
Q psy12953 94 DPLFGD-----MHDFEILIEEAHSRGKPKRT-FREVTKS 126 (136)
Q Consensus 94 d~~~Gt-----~~~~~~lv~~ah~~Gi~vil-~nh~~~~ 126 (136)
|++|.. .+.|+.+|++|+++|+.+-+ .||-|.+
T Consensus 129 deey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~ 167 (611)
T PRK02048 129 DEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLS 167 (611)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCch
Confidence 555544 36799999999999999999 8998764
No 455
>PRK06267 hypothetical protein; Provisional
Probab=45.14 E-value=1.1e+02 Score=24.81 Aligned_cols=54 Identities=9% Similarity=0.145 Sum_probs=31.9
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHH
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHS 112 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~ 112 (136)
.+..++.+.+..+++++++.+.+.|+.+.+... +.. ..-.+.+++.+++..++-
T Consensus 179 Et~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp-------~~~--~~~~s~~e~lr~ia~~Rl 232 (350)
T PRK06267 179 ETEDDIEKLLNLIEELDLDRITFYSLNPQKGTI-------FEN--KPSVTTLEYMNWVSSVRL 232 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCc-------CCC--CCCCCHHHHHHHHHHHHH
Confidence 456666666777777777777666665554311 111 123566777777776654
No 456
>PRK07360 FO synthase subunit 2; Reviewed
Probab=44.86 E-value=31 Score=28.11 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=18.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 95 PLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 95 ~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
|.--+.++..+.++.||+.||++-.
T Consensus 195 p~~~s~~~~l~~i~~a~~~Gl~~~s 219 (371)
T PRK07360 195 PEKIKTAEWIEIVKTAHKLGLPTTS 219 (371)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCcee
Confidence 4334667788999999999998754
No 457
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=44.79 E-value=55 Score=27.44 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.7
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCc
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFY 76 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~ 76 (136)
++..++.++.++++++|.+.+.+.+..
T Consensus 208 ~~~~em~~ra~~a~e~G~~~~mv~~~~ 234 (412)
T cd08213 208 APVREMERRAELVADLGGKYVMIDVVV 234 (412)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEeeccc
Confidence 568899999999999999998888765
No 458
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=44.58 E-value=71 Score=26.26 Aligned_cols=54 Identities=13% Similarity=0.048 Sum_probs=32.5
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCc-EEE
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKP-KRT 119 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~-vil 119 (136)
++++.++++|++.|.+..=.-. ..-...+ .+--+.++..+.++.+++.|+. |-+
T Consensus 116 e~l~~l~~~GvnrislGvQS~~--------d~~L~~l-~R~~~~~~~~~ai~~l~~~G~~~v~~ 170 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLGVQAFQ--------DELLALC-GRSHRVKDIFAAVDLIHQAGIENFSL 170 (400)
T ss_pred HHHHHHHHCCCCEEEEEcccCC--------HHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 5677788888888877541110 1111122 2234677888888888888887 434
No 459
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=44.55 E-value=69 Score=24.88 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 97 FGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 97 ~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.|..++++++.+.||++|+.+++
T Consensus 161 tG~~~~~~~i~~~~~~~~~~l~v 183 (345)
T cd06450 161 TGAIDPLEEIADLAEKYDLWLHV 183 (345)
T ss_pred CCCCCCHHHHHHHHHHhCCeEEE
Confidence 34556789999999999999988
No 460
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=44.40 E-value=74 Score=25.76 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=34.6
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+++.+.+.+. -.+.+|++-|++..+.. ...+.+.++++++.|+++|+-+|+
T Consensus 173 d~~~l~~~l~----~~~aaiiiep~~~~gg~--------------~~~~~~~l~~l~~l~~~~g~~lI~ 223 (403)
T PRK05093 173 DLAAVKAVID----DHTCAVVVEPIQGEGGV--------------IPATPEFLQGLRELCDQHNALLIF 223 (403)
T ss_pred CHHHHHHHhc----CCeEEEEEecccCCCCC--------------ccCCHHHHHHHHHHHHHcCCEEEE
Confidence 4555554432 24678888887654321 012467899999999999999998
No 461
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=44.37 E-value=19 Score=30.19 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHCCCcEEE--eccCCCcc
Q psy12953 102 DFEILIEEAHSRGKPKRT--FREVTKSF 127 (136)
Q Consensus 102 ~~~~lv~~ah~~Gi~vil--~nh~~~~~ 127 (136)
.+-+|++.|+++|.+||+ +-|+..+.
T Consensus 244 ~lgeL~~rA~e~gVQvMVEGPGHvPl~~ 271 (423)
T TIGR00190 244 TLGELVERAREADVQCMVEGPGHVPLDQ 271 (423)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCcHHH
Confidence 478899999999999999 88887654
No 462
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=44.36 E-value=76 Score=21.38 Aligned_cols=63 Identities=22% Similarity=0.214 Sum_probs=30.7
Q ss_pred HHhHHHHHHcCCcEEEE-cCCccCCCC-----------CCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 56 TEKLDHFVDLGIESLWI-QPFYPAGGA-----------DLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l-~Pi~~~~~~-----------~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+.+..|+++||.+|.= -|--|.+.. ..|-.- -+.-|...-=+.+++.+|.++..+..-.|++
T Consensus 17 ~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y-~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~ 91 (110)
T PF04273_consen 17 PEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQY-VHIPVDGGAITEEDVEAFADALESLPKPVLA 91 (110)
T ss_dssp HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EE-EE----TTT--HHHHHHHHHHHHTTTTSEEE
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeE-EEeecCCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 45678899999999765 454443211 011000 0112332223567777777777777667777
No 463
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=44.28 E-value=1.3e+02 Score=24.55 Aligned_cols=58 Identities=12% Similarity=0.193 Sum_probs=38.4
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-..+.+....+++.|+..+. ...++.....++ |.. +| .++++.|-+.+++.||.++.
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r-~~~~kpRtsp~~-----f~g----~~-~e~l~~L~~~~~~~Gl~~~t 187 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLR-GGAFKPRTSPYD-----FQG----LG-VEGLKILKQVADEYGLAVIS 187 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEE-ccccCCCCCCcc-----ccC----CC-HHHHHHHHHHHHHcCCCEEE
Confidence 455566667789999997666 333332222112 221 12 58999999999999999998
No 464
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=44.25 E-value=26 Score=24.94 Aligned_cols=27 Identities=26% Similarity=0.565 Sum_probs=23.7
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCCC
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAGG 80 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~ 80 (136)
.+.+.++.+++.|++.|.+.|.++..+
T Consensus 100 ~i~~~l~~l~~~g~~~iivlPl~P~~S 126 (159)
T cd03411 100 SIEEALEELKADGVDRIVVLPLYPQYS 126 (159)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCcccc
Confidence 477888999999999999999998754
No 465
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=44.25 E-value=81 Score=25.62 Aligned_cols=52 Identities=10% Similarity=-0.078 Sum_probs=31.0
Q ss_pred HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCc
Q psy12953 56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKP 116 (136)
Q Consensus 56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~ 116 (136)
.++++.++++|++.|.|..=.-. ..-+..+. +--+.++..+.++.+++.|+.
T Consensus 103 ~~~l~~l~~~G~nrislGvQS~~--------~~~L~~l~-R~~~~~~~~~ai~~~~~~g~~ 154 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQTFD--------DPLLKLLG-RTHSSSKAIDAVQECSEHGFS 154 (370)
T ss_pred HHHHHHHHHCCCCEEEEccccCC--------HHHHHHcC-CCCCHHHHHHHHHHHHHcCCC
Confidence 36688899999999987541111 11111222 222566777777777777775
No 466
>COG1647 Esterase/lipase [General function prediction only]
Probab=44.13 E-value=32 Score=26.68 Aligned_cols=35 Identities=14% Similarity=0.035 Sum_probs=27.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccC
Q psy12953 94 DPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFA 128 (136)
Q Consensus 94 d~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~ 128 (136)
+.--||+.|++.|-+.++++|-.|..+|=-+++++
T Consensus 22 HGFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~ 56 (243)
T COG1647 22 HGFTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTL 56 (243)
T ss_pred eccCCCcHHHHHHHHHHHHCCceEecCCCCCCCCC
Confidence 34458999999999999999999999665555443
No 467
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=44.09 E-value=46 Score=25.89 Aligned_cols=44 Identities=9% Similarity=0.183 Sum_probs=30.3
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-..+...+.-+|++|+|+|-+.-..+ =.++.+.|-+.||-|+-
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h~p~-------------------------~~~~~~~cD~~GilV~~ 77 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHHYPP-------------------------SPRFYDLCDELGILVWQ 77 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETTS---------------------------SHHHHHHHHHHT-EEEE
T ss_pred CHHHHHHHHHHHHhcCcceEEcccccC-------------------------cHHHHHHHhhcCCEEEE
Confidence 455666778899999999999843211 14567788899999998
No 468
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=43.93 E-value=1.3e+02 Score=22.46 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=39.3
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..++.+.+.+...++.|++-|.++=.+- .||...+.......--..+.++.+.+.|+++|+-+++
T Consensus 16 ~n~~~i~~~i~~a~~~gadliv~PE~~l-----~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~ 80 (261)
T cd07585 16 RNLAVIARWTRKAAAQGAELVCFPEMCI-----TGYTHVRALSREAEVPDGPSTQALSDLARRYGLTILA 80 (261)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccccc-----ccccCCcccchhcccCCChHHHHHHHHHHHcCcEEEE
Confidence 3456666667778889988877664442 2444433222111111224577788888899999998
No 469
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=43.89 E-value=29 Score=27.62 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=28.0
Q ss_pred ccCCCCCCCC-CCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 87 VSNYVDVDPL-FGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 87 ~~d~~~vd~~-~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..|...+|+. .|+..+.+++++.|+++|+++++
T Consensus 246 ~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~ 279 (324)
T TIGR01928 246 NVKVINIKPGRLGGLTEVQKAIETCREHGAKVWI 279 (324)
T ss_pred CCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEE
Confidence 4555667755 59999999999999999999998
No 470
>PRK08445 hypothetical protein; Provisional
Probab=43.77 E-value=30 Score=28.02 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 93 VDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 93 vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
+-|.--+.++..+.++.||+.||++..
T Consensus 174 ~~pk~~t~~~~i~~i~~a~~~Gi~~~s 200 (348)
T PRK08445 174 IAPKKLDSDRWLEVHRQAHLIGMKSTA 200 (348)
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCeeee
Confidence 335556677778999999999999876
No 471
>KOG2730|consensus
Probab=43.51 E-value=45 Score=26.01 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=29.7
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYV 91 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~ 91 (136)
|||.++...++.-|+. ++.+.++|.+-.+++ .+|.+.|..
T Consensus 150 GD~ld~~~~lq~~K~~-~~~vf~sppwggp~y-~~~~~~DL~ 189 (263)
T KOG2730|consen 150 GDFLDLASKLKADKIK-YDCVFLSPPWGGPSY-LRADVYDLE 189 (263)
T ss_pred chHHHHHHHHhhhhhe-eeeeecCCCCCCcch-hhhhhhhhh
Confidence 8999999999888888 999999998865542 344444443
No 472
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=43.42 E-value=42 Score=24.41 Aligned_cols=63 Identities=14% Similarity=0.287 Sum_probs=28.0
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
||+.++..++.. ... ++.|.++|++-.++ |.-.+-++++..+. +-++.++++.+.+.--.|++
T Consensus 55 gD~~~~~~~~~~-~~~-~D~vFlSPPWGGp~----Y~~~~~fdL~~~~~-p~~~~~l~~~~~~~t~nv~l 117 (163)
T PF09445_consen 55 GDFFELLKRLKS-NKI-FDVVFLSPPWGGPS----YSKKDVFDLEKSMQ-PFNLEDLLKAARKITPNVVL 117 (163)
T ss_dssp S-HHHHGGGB--------SEEEE---BSSGG----GGGSSSB-TTTSSS-S--HHHHHHHHHHH-S-EEE
T ss_pred CCHHHHHhhccc-ccc-ccEEEECCCCCCcc----ccccCccCHHHccC-CCCHHHHHHHHHhhCCCEEE
Confidence 666665554322 112 89999999996654 33344445533333 23466666666666544554
No 473
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.33 E-value=60 Score=26.18 Aligned_cols=62 Identities=18% Similarity=0.349 Sum_probs=42.1
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcC-CccCCC-CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQP-FYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~P-i~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..++.+...|.|..+.||.---|+. +++..+ ...||+...+. .++++++=+.++++||++-+
T Consensus 49 ~Nl~~l~~~L~~n~~~~I~f~RisS~l~P~ash~~~~~~~~~~~--------~~~l~~iG~~a~~~~iRLS~ 112 (312)
T TIGR00629 49 ANLRDTMKTLHWNIGHGIPFYRFSSSIFPFASHPDVGYDLVTFA--------QKELREIGELAKTHQHRLTF 112 (312)
T ss_pred HHHHHHHHHHHHHHHcCCcEEecCccccCcCcCchhhhhHHHHH--------HHHHHHHHHHHHHcCeEEEE
Confidence 3467777888899999998887754 333221 11233332111 26899999999999999999
No 474
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=43.07 E-value=29 Score=24.27 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=20.8
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPA 78 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~ 78 (136)
--+.++.-.|+-++++|++.+.++|+...
T Consensus 33 pEy~Dl~l~L~~~k~~g~~~lfVi~PvNg 61 (130)
T PF04914_consen 33 PEYDDLQLLLDVCKELGIDVLFVIQPVNG 61 (130)
T ss_dssp THHHHHHHHHHHHHHTT-EEEEEE----H
T ss_pred ccHHHHHHHHHHHHHcCCceEEEecCCcH
Confidence 44788888899999999999999887653
No 475
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=43.04 E-value=51 Score=25.05 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=36.3
Q ss_pred hHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 58 KLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 58 ~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.|..+.+.|..+..+-=++.... ....|......+|.+...+|.++|++|+.
T Consensus 148 eL~~l~~~G~ra~vlFvvqr~d~----------~~f~p~~~~Dp~fa~~l~~A~~~GV~v~a 199 (215)
T PF03749_consen 148 ELAELAEEGYRAAVLFVVQRPDA----------ERFRPNREIDPEFAEALREAAEAGVEVLA 199 (215)
T ss_pred HHHHHHhccCcEEEEEEEECCCC----------CEEeEChhcCHHHHHHHHHHHHCCCEEEE
Confidence 35566778999888855543321 12334444556789999999999999998
No 476
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=43.02 E-value=30 Score=26.37 Aligned_cols=19 Identities=37% Similarity=0.653 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHCCCcEEE
Q psy12953 101 HDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 101 ~~~~~lv~~ah~~Gi~vil 119 (136)
+.++++|++||++|+++.+
T Consensus 185 ~~l~~~v~~a~~~Gl~vr~ 203 (228)
T cd08577 185 EKLKSIIDKAHARGKKVRF 203 (228)
T ss_pred HHHHHHHHHHHHCCCEEEE
Confidence 5699999999999999998
No 477
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=42.70 E-value=27 Score=25.41 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHCCCcEEE
Q psy12953 98 GDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 98 Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.+..||..|++.++++|.+|+.
T Consensus 113 SgD~DF~~Lv~~lre~G~~V~v 134 (160)
T TIGR00288 113 TRDADFLPVINKAKENGKETIV 134 (160)
T ss_pred eccHhHHHHHHHHHHCCCEEEE
Confidence 3467999999999999999998
No 478
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=42.59 E-value=13 Score=30.90 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHCCCcEEE--eccCCCc
Q psy12953 100 MHDFEILIEEAHSRGKPKRT--FREVTKS 126 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil--~nh~~~~ 126 (136)
...+-+|++.|+++|.+||+ +-|+..+
T Consensus 243 L~tlgeL~krA~~~gVQvmvEGPGHvpl~ 271 (432)
T COG0422 243 LITLGELTKRAWEAGVQVMVEGPGHVPLN 271 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCcCcHH
Confidence 34688899999999999999 8787653
No 479
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=42.44 E-value=62 Score=25.57 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHCCCcEEEeccCCCcc
Q psy12953 99 DMHDFEILIEEAHSRGKPKRTFREVTKSF 127 (136)
Q Consensus 99 t~~~~~~lv~~ah~~Gi~vil~nh~~~~~ 127 (136)
+.+++.+.++.+++.|++|.. |+-...
T Consensus 161 t~~~~~~ai~~l~~~gi~v~~--~lI~Gl 187 (302)
T TIGR01212 161 DFACYVDAVKRARKRGIKVCS--HVILGL 187 (302)
T ss_pred hHHHHHHHHHHHHHcCCEEEE--eEEECC
Confidence 578999999999999999887 544333
No 480
>TIGR03555 F420_mer 5,10-methylenetetrahydromethanopterin reductase. Members of this protein family are 5,10-methylenetetrahydromethanopterin reductase, an F420-dependent enzyme of methanogenesis. It is restricted to the Archaea.
Probab=42.40 E-value=33 Score=27.17 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=23.7
Q ss_pred CCCHHHHHHhHHHHHHcCCcEEEEcC
Q psy12953 49 TGDMRGITEKLDHFVDLGIESLWIQP 74 (136)
Q Consensus 49 ~g~~~~l~~~l~~l~~lG~~~I~l~P 74 (136)
.|+..++.++|..++++|++.+.+..
T Consensus 281 ~Gtpe~v~~~l~~~~~~Gvd~~~l~~ 306 (325)
T TIGR03555 281 AGTPDDVIEKIEELLKAGVTQVVAGS 306 (325)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 59999999999999999999999853
No 481
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=42.34 E-value=42 Score=26.33 Aligned_cols=28 Identities=11% Similarity=-0.019 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEeccCCCc
Q psy12953 97 FGDMHDFEILIEEAHSRGKPKRTFREVTKS 126 (136)
Q Consensus 97 ~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~ 126 (136)
..+.++|+.+++.|+++|+.|.+ |.+.+
T Consensus 169 ~~~~~~~~~~~~~A~~~g~~v~~--H~~E~ 196 (325)
T cd01320 169 GFPPEKFVRAFQRAREAGLRLTA--HAGEA 196 (325)
T ss_pred CCCHHHHHHHHHHHHHCCCceEE--eCCCC
Confidence 34789999999999999999999 87653
No 482
>PRK05968 hypothetical protein; Provisional
Probab=42.28 E-value=43 Score=27.26 Aligned_cols=27 Identities=15% Similarity=0.071 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953 96 LFGDMHDFEILIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 96 ~~Gt~~~~~~lv~~ah~~Gi~vil~nh 122 (136)
..+...+++++.+.||++|+.|+++|-
T Consensus 159 ~~~~~~dl~~i~~la~~~gi~vivD~a 185 (389)
T PRK05968 159 WVFELQDVAALAALAKRHGVVTMIDNS 185 (389)
T ss_pred CCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 456679999999999999999999553
No 483
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.22 E-value=1.6e+02 Score=23.82 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=37.8
Q ss_pred HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
..++.+..+.++++.+ .|-|.|..+.+. .+|..+ +.++++++.+.++++|+.|.+
T Consensus 261 ~e~~~~L~~ll~~~~~-~VnLIPynp~~~-------~~~~~p-----s~e~i~~f~~~L~~~Gi~vti 315 (343)
T PRK14468 261 LWQAELLADLLRGLVS-HVNLIPFNPWEG-------SPFQSS-----PRAQILAFADVLERRGVPVSV 315 (343)
T ss_pred HHHHHHHHHHHhcCCc-EEEEEcCCCCCC-------CCCCCC-----CHHHHHHHHHHHHHCCCeEEE
Confidence 3455666667777754 688888775431 223322 357888999999999999998
No 484
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.08 E-value=1.4e+02 Score=21.95 Aligned_cols=46 Identities=15% Similarity=0.306 Sum_probs=27.2
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFR 121 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~n 121 (136)
....+.+..+.+.++++|.+.|... +...+.++.+++.|+.|++++
T Consensus 42 ~~~~~~~~~~~~~~vdgiii~~~~~-----------------------~~~~~~~~~~~~~~ipvV~~~ 87 (267)
T cd06322 42 NKQLSDVEDFITKKVDAIVLSPVDS-----------------------KGIRAAIAKAKKAGIPVITVD 87 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCh-----------------------hhhHHHHHHHHHCCCCEEEEc
Confidence 3444555566666777777765421 224455666777788777743
No 485
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=42.01 E-value=21 Score=29.97 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHCCCcEEE--eccCCCcc
Q psy12953 102 DFEILIEEAHSRGKPKRT--FREVTKSF 127 (136)
Q Consensus 102 ~~~~lv~~ah~~Gi~vil--~nh~~~~~ 127 (136)
.+-+|++.|+++|.+||+ +-|+..+.
T Consensus 247 ~lgeL~~RA~e~gVQvMVEGPGHvPl~~ 274 (431)
T PRK13352 247 TLGELVKRAREAGVQVMVEGPGHVPLDQ 274 (431)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCCHHH
Confidence 478899999999999999 88887654
No 486
>KOG4730|consensus
Probab=42.00 E-value=33 Score=29.35 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHCCCcEEE
Q psy12953 99 DMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 99 t~~~~~~lv~~ah~~Gi~vil 119 (136)
|.+||+++|++||++|.++-.
T Consensus 58 teaeL~~lVa~A~~a~~kirv 78 (518)
T KOG4730|consen 58 TEAELVELVAAATEAGKKIRV 78 (518)
T ss_pred CHHHHHHHHHHHHHcCceEEE
Confidence 578999999999999999887
No 487
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=41.95 E-value=26 Score=23.17 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=22.2
Q ss_pred HHHHhHHHHHHcCCcEEEEcCCccCC
Q psy12953 54 GITEKLDHFVDLGIESLWIQPFYPAG 79 (136)
Q Consensus 54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~ 79 (136)
.+.+.++.+++.|++.|.+.|.|-.+
T Consensus 46 ~~~~~l~~l~~~g~~~i~vvP~fL~~ 71 (117)
T cd03414 46 SLPEALERLRALGARRVVVLPYLLFT 71 (117)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhcC
Confidence 56777778899999999999998765
No 488
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=41.92 E-value=28 Score=26.96 Aligned_cols=60 Identities=15% Similarity=0.025 Sum_probs=36.0
Q ss_pred HHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 60 DHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 60 ~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
.++..+|+.+..+............-...|.--+=..-|...++.++++.|+++|+++++
T Consensus 160 ~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~ 219 (292)
T PRK11337 160 HKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIIC 219 (292)
T ss_pred HHHhhCCCeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 467778888876644322110000011223222333346567899999999999999999
No 489
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=41.88 E-value=32 Score=28.06 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHCCCcEEE
Q psy12953 100 MHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil 119 (136)
.+++++|++.||+.||.+++
T Consensus 216 ~~~L~~l~~~A~~LGme~LV 235 (338)
T PLN02460 216 DLDIKYMLKICKSLGMAALI 235 (338)
T ss_pred HHHHHHHHHHHHHcCCeEEE
Confidence 46899999999999999998
No 490
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=41.83 E-value=95 Score=25.02 Aligned_cols=51 Identities=22% Similarity=0.107 Sum_probs=30.0
Q ss_pred HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCc
Q psy12953 57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKP 116 (136)
Q Consensus 57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~ 116 (136)
+.++.++++|++.|.+.- ++.. ..-+..+ .+-.+.++..+.++.+++.|+.
T Consensus 100 e~l~~l~~~G~~rvsiGv--qS~~------d~~L~~l-~R~~~~~~~~~ai~~l~~~g~~ 150 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGL--QAWQ------NSLLKYL-GRIHTFEEFLENYKLARKLGFN 150 (374)
T ss_pred HHHHHHHHcCCCEEEEEC--ccCC------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCC
Confidence 567788888888877754 1110 1111122 1333567777777777777775
No 491
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.82 E-value=1.4e+02 Score=21.83 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=18.9
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCc
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFY 76 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~ 76 (136)
+.....+.++.+.+.|+++|.+.|..
T Consensus 40 ~~~~~~~~i~~~~~~~vdgiii~~~~ 65 (268)
T cd06289 40 DVERQEQLLSTMLEHGVAGIILCPAA 65 (268)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 34555666777888889999888764
No 492
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=41.64 E-value=54 Score=26.66 Aligned_cols=27 Identities=19% Similarity=-0.034 Sum_probs=18.6
Q ss_pred CCCCCC--CCCCHHHHHHHHHHHHHCCCc
Q psy12953 90 YVDVDP--LFGDMHDFEILIEEAHSRGKP 116 (136)
Q Consensus 90 ~~~vd~--~~Gt~~~~~~lv~~ah~~Gi~ 116 (136)
|..+.+ +=.+.++-.+-++.|++.||+
T Consensus 188 y~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 216 (366)
T TIGR02351 188 YKKHHLAGKKKDFRYRLNTPERAAKAGMR 216 (366)
T ss_pred HHhcCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 444543 222577778888999999987
No 493
>PRK09989 hypothetical protein; Provisional
Probab=41.64 E-value=1.3e+02 Score=22.69 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=35.5
Q ss_pred HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC-CHHHHHHHHHHHHHCCCcEEE
Q psy12953 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG-DMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G-t~~~~~~lv~~ah~~Gi~vil 119 (136)
+.+.+.++..+++|+..|.+.|-.... +.. .+..+- ..+.|+++.+.|.+.|+++.+
T Consensus 85 ~~l~~~i~~A~~lg~~~v~v~~g~~~~----~~~------~~~~~~~~~~~l~~l~~~a~~~gv~l~l 142 (258)
T PRK09989 85 ADIDLALEYALALNCEQVHVMAGVVPA----GED------AERYRAVFIDNLRYAADRFAPHGKRILV 142 (258)
T ss_pred HHHHHHHHHHHHhCcCEEEECccCCCC----CCC------HHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 446666788899999999876532111 100 000000 135688888888888888877
No 494
>PRK12677 xylose isomerase; Provisional
Probab=41.55 E-value=74 Score=26.22 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=37.4
Q ss_pred HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCC-HHHHHHHHHHHHHCC--CcEEE
Q psy12953 52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGD-MHDFEILIEEAHSRG--KPKRT 119 (136)
Q Consensus 52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt-~~~~~~lv~~ah~~G--i~vil 119 (136)
++.+.+.++..++||++.|.+.|=......+ ...|+. ..+-. .+.|+++.+.|.++| +++.+
T Consensus 113 i~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~---~~~d~~---~a~~~~~eaL~~l~~~A~~~G~gV~laI 177 (384)
T PRK12677 113 LRKVLRNIDLAAELGAKTYVMWGGREGAEYD---AAKDVR---AALDRYREAIDLLAAYVKDQGYDLRFAL 177 (384)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeCCCCccCc---ccCCHH---HHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 5556777899999999999887532211000 011111 11111 256778889998855 98888
No 495
>PRK15108 biotin synthase; Provisional
Probab=41.54 E-value=1.3e+02 Score=24.26 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=36.7
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil 119 (136)
=+.+++.+....++++|++.|.+.--... |..-+.+.+.++++++++.|+.+++
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~----------------p~~~~~e~i~~~i~~ik~~~i~v~~ 129 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKN----------------PHERDMPYLEQMVQGVKAMGLETCM 129 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCC----------------CCcchHHHHHHHHHHHHhCCCEEEE
Confidence 36778888888889999999966422111 1111246677888888888887765
No 496
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=41.53 E-value=1.3e+02 Score=22.89 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=39.7
Q ss_pred CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC-CHHHHHHHHHHHHHCCCcEEEecc
Q psy12953 51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG-DMHDFEILIEEAHSRGKPKRTFRE 122 (136)
Q Consensus 51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G-t~~~~~~lv~~ah~~Gi~vil~nh 122 (136)
.++.+...++..+++|++.|.+.|-.... ...+..+- ..+.++++++.|.+.||++.+=||
T Consensus 83 ~~~~~~~~i~~A~~lG~~~v~~~~g~~~~-----------~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 83 SIERLKDEIERCEELGIRLLVFHPGSYLG-----------QSKEEGLKRVIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCCC-----------CCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 35667777889999999998875532110 00000010 125689999999999999999343
No 497
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=41.43 E-value=98 Score=26.53 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=21.8
Q ss_pred CCCHH-HHHHHHHHHHHCCCcEEEeccC
Q psy12953 97 FGDMH-DFEILIEEAHSRGKPKRTFREV 123 (136)
Q Consensus 97 ~Gt~~-~~~~lv~~ah~~Gi~vil~nh~ 123 (136)
.|+.. ++++||+-+++.|.+++-.|-+
T Consensus 22 iGDfg~dl~~~id~~~~~G~~~~qilPl 49 (497)
T PRK14508 22 IGDFGKGAYEFIDFLAEAGQSYWQILPL 49 (497)
T ss_pred CcchHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 46664 9999999999999999983333
No 498
>KOG1838|consensus
Probab=41.35 E-value=37 Score=28.46 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHCCCcEEEeccCCCc
Q psy12953 102 DFEILIEEAHSRGKPKRTFREVTKS 126 (136)
Q Consensus 102 ~~~~lv~~ah~~Gi~vil~nh~~~~ 126 (136)
=.+.||.+|.++|.+++++||-+..
T Consensus 142 YVr~lv~~a~~~G~r~VVfN~RG~~ 166 (409)
T KOG1838|consen 142 YVRHLVHEAQRKGYRVVVFNHRGLG 166 (409)
T ss_pred HHHHHHHHHHhCCcEEEEECCCCCC
Confidence 4999999999999999999998843
No 499
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=41.24 E-value=35 Score=26.56 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHCCCcEEE
Q psy12953 100 MHDFEILIEEAHSRGKPKRT 119 (136)
Q Consensus 100 ~~~~~~lv~~ah~~Gi~vil 119 (136)
.+++++|++.|++.||.+++
T Consensus 137 ~~~l~~l~~~a~~lGle~LV 156 (247)
T PRK13957 137 PSQIKSFLKHASSLGMDVLV 156 (247)
T ss_pred HHHHHHHHHHHHHcCCceEE
Confidence 46899999999999999998
No 500
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=41.20 E-value=88 Score=24.32 Aligned_cols=59 Identities=20% Similarity=0.248 Sum_probs=44.0
Q ss_pred CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccCC
Q psy12953 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFAN 129 (136)
Q Consensus 50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~~ 129 (136)
..+.-+.+-+.-.+++|+..|.+.-+...+.-| .+-+++|++++. ||.|.+ |..++...
T Consensus 70 ~E~~iM~~DI~~~~~lG~~GVV~G~lt~dg~iD-----------------~~~le~Li~aA~--gL~vTF--HrAFD~~~ 128 (241)
T COG3142 70 DELEIMLEDIRLARELGVQGVVLGALTADGNID-----------------MPRLEKLIEAAG--GLGVTF--HRAFDECP 128 (241)
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEeeecCCCccC-----------------HHHHHHHHHHcc--CCceee--ehhhhhcC
Confidence 446677778899999999999999887665422 346788887766 888888 77666543
Done!