RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12953
(136 letters)
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family,
(beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila}
PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A*
3gbe_A* 3gbd_A*
Length = 557
Score = 158 bits (402), Expect = 4e-47
Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 23 PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
P WW++A+ YQ+YPRSF+D NGDG GD +G+TEKLD+ LGI+++WI P Y + D
Sbjct: 2 PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTD 61
Query: 83 LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYD+S+Y +V +G M DF+ L+ E RG
Sbjct: 62 NGYDISDYREVMKEYGTMEDFDRLMAELKKRG 93
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization,
isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Length = 570
Score = 157 bits (400), Expect = 8e-47
Identities = 47/96 (48%), Positives = 61/96 (63%)
Query: 19 QVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA 78
Q E WW+ A+ YQIYPRSF+D N DG GD+RGI EKLD+ LGI+++WI P Y +
Sbjct: 11 QKESEYPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINPHYDS 70
Query: 79 GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
D GYD+SNY + +G M DF+ L+ E R
Sbjct: 71 PNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRN 106
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase;
2.20A {Streptococcus mutans} PDB: 2zid_A*
Length = 543
Score = 156 bits (398), Expect = 1e-46
Identities = 44/91 (48%), Positives = 62/91 (68%)
Query: 24 QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
QK WW A +YQIYP+SF D NGDG GD++GIT KLD+ LG+ ++W+ P Y + D
Sbjct: 2 QKHWWHKATVYQIYPKSFMDTNGDGIGDLKGITSKLDYLQKLGVMAIWLSPVYDSPMDDN 61
Query: 84 GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYD++NY + +FG+M D + L+ +A RG
Sbjct: 62 GYDIANYEAIADIFGNMADMDNLLTQAKMRG 92
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle,
hydrolase; 2.00A {Geobacillus SP}
Length = 555
Score = 156 bits (397), Expect = 2e-46
Identities = 49/91 (53%), Positives = 65/91 (71%)
Query: 24 QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
+K WW+ + YQIYPRSF D NGDG GD+RGI EKLD+ V+LG++ +WI P Y + AD
Sbjct: 2 KKTWWKEGVAYQIYPRSFMDANGDGIGDLRGIIEKLDYLVELGVDIVWICPIYRSPNADN 61
Query: 84 GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYD+S+Y + FG M DF+ L+ +AH RG
Sbjct: 62 GYDISDYYAIMDEFGTMDDFDELLAQAHRRG 92
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel
glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1
c.1.8.1
Length = 558
Score = 156 bits (396), Expect = 3e-46
Identities = 44/91 (48%), Positives = 63/91 (69%)
Query: 24 QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
+K+WW+ +++YQIYPRSF D NGDG GD+RGI KLD+ +LGI+ +W+ P Y + D
Sbjct: 2 EKQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDN 61
Query: 84 GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYD+S+Y + FG M D++ L+ E H R
Sbjct: 62 GYDISDYCKIMNEFGTMEDWDELLHEMHERN 92
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A
{Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A*
3axh_A*
Length = 589
Score = 156 bits (396), Expect = 4e-46
Identities = 43/92 (46%), Positives = 60/92 (65%)
Query: 23 PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
+ +WW+ A YQIYP SF+D N DG GDM+GI KL++ +LG +++WI PFY + D
Sbjct: 10 TEPKWWKEATFYQIYPASFKDSNDDGWGDMKGIASKLEYIKELGADAIWISPFYDSPQDD 69
Query: 83 LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
+GYD++NY V P +G D LIE+ H G
Sbjct: 70 MGYDIANYEKVWPTYGTNEDCFALIEKTHKLG 101
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich,
membrane protein; 2.20A {Bacteroides thetaiotaomicron}
PDB: 3k8m_A* 3k8l_A*
Length = 669
Score = 149 bits (379), Expect = 2e-43
Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 23 PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
E + I YQ+ SF D +GDG GD+ G+T+KLD+ LG+++LW+ P +P +
Sbjct: 30 TWDETKRADISYQLLLYSFADSDGDGYGDLNGVTQKLDYLNQLGVKALWLSPIHPC-MSY 88
Query: 83 LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYDV++Y V+P G DF+ L+ EAH+RG
Sbjct: 89 HGYDVTDYTKVNPQLGTESDFDRLVTEAHNRG 120
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 142 bits (361), Expect = 1e-41
Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 9/96 (9%)
Query: 27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHF--------VDLGIESLWIQPFYPA 78
+ + Y+I+ RSF D +GDG GD++GI EKLD+ DLG+ +W+ P + +
Sbjct: 1 FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKS 60
Query: 79 GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYDV++Y ++P +G + DF L+E AH RG
Sbjct: 61 PSYH-GYDVTDYYKINPDYGTLEDFHKLVEAAHQRG 95
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose,
(beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Length = 441
Score = 140 bits (355), Expect = 4e-41
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 32 IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYV 91
I YQIY RSFRD N DG GD RG+ + + +LGI+ +W+ P + + + GYDV ++
Sbjct: 2 IGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSS-ISFHGYDVVDFY 60
Query: 92 DVDPLFGDMHDFEILIEEAHSRG 114
+G +F+ +IE H G
Sbjct: 61 SFKAEYGSEREFKEMIEAFHDSG 83
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like,
antiparallel beta-sheet, greek terminal domain,
extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Length = 424
Score = 139 bits (352), Expect = 8e-41
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 21 ELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG 80
ELP ++WW T +Y+I + G G G++ G+ +LD+ L ++ L + P +
Sbjct: 6 ELPAQKWWHTGALYRI--GDLQAFQGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQK 63
Query: 81 ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
D+ ++ + +DP FG DF+ L++ A +
Sbjct: 64 DDVAQ--TDLLQIDPNFGSKEDFDSLLQSAKKKS 95
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 2.00A {Lactobacillus
plantarum}
Length = 449
Score = 116 bits (293), Expect = 4e-32
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL- 83
+ + ++Y ++ R++ + G+ G+T L DLG + LW+ P P G +
Sbjct: 7 QTQLRNEMIYSVFVRNYSE-----AGNFAGVTADLQRIKDLGTDILWLLPINPIGEVNRK 61
Query: 84 -----GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
Y + +Y ++P +G + DF+ L + AH G
Sbjct: 62 GTLGSPYAIKDYRGINPEYGTLADFKALTDRAHELG 97
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 113 bits (285), Expect = 2e-30
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 26 EWWQTAIMYQIYPRSFR--DVNGDGT---------------GDMRGITEKLDHFVDLGIE 68
W+ + YQI+ SF D N D GD+ GI + +DH DLG+E
Sbjct: 221 RWYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDLAGIMKHIDHLEDLGVE 280
Query: 69 SLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
++++ P + + YD +Y +D G M DFE L++ HSR
Sbjct: 281 TIYLTPIFSSTSYH-RYDTIDYKSIDKYLGTMEDFEKLVQVLHSRK 325
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national
project on structural and functional analyses; HET: GLC;
2.30A {Thermus thermophilus}
Length = 475
Score = 107 bits (269), Expect = 1e-28
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 27 WWQTAIMYQIYPRSFRDVNGDGT---------------------GDMRGITEKLDHFVDL 65
W++ A YQI+P F G G + G+ EKL + +DL
Sbjct: 3 WYEGAFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTLWGVAEKLPYLLDL 62
Query: 66 GIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
G+E++++ P + + A+ Y +Y VDP+ G L+E AH+ G
Sbjct: 63 GVEAIYLNPVFAST-ANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHG 110
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase,
(beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria
polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A*
1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A*
1s46_A* 1zs2_A*
Length = 628
Score = 104 bits (261), Expect = 2e-27
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLG 84
+ Y F GD++G+ +K+ +F +LG+ L + P + P G +D G
Sbjct: 94 LSNKQVGGVCYVDLFA-------GDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGG 146
Query: 85 YDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
Y VS+Y DV+P G + D +I H G
Sbjct: 147 YAVSSYRDVNPALGTIGDLREVIAALHEAG 176
>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose
isomerization, beta/alpha-barrel, carbohydrate binding,
transferase; 1.97A {Deinococcus geothermalis} PDB:
3uer_A*
Length = 655
Score = 104 bits (261), Expect = 2e-27
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 23 PQKEWWQ--TAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFY--PA 78
+ +W Q + Y Y F G ++G+ E+LD+ LG++ L + P
Sbjct: 86 LRPDWLQRPEMVGYVAYTDRF-------AGTLKGVEERLDYLEGLGVKYLHLMPLLRPRE 138
Query: 79 GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
G D GY V +Y V P G M D L RG
Sbjct: 139 GENDGGYAVQDYRAVRPDLGTMDDLSALARALRGRG 174
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A
{Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A*
2wpg_A
Length = 644
Score = 104 bits (260), Expect = 3e-27
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 23 PQKEWWQTAIM--YQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFY--PA 78
W+ M Y Y F G ++G+ E++ + +LG+ L + PF A
Sbjct: 81 RHAGWFGQPHMLGYSAYADRF-------AGTLQGVAERVPYLQELGVRYLHLLPFLRARA 133
Query: 79 GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
G D G+ VS+Y V+P G D L G
Sbjct: 134 GDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAG 169
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes,
hydrolase, glycosidase, neopullu; 2.37A {Nostoc
punctiforme} PDB: 2wcs_A 2wkg_A
Length = 488
Score = 98.2 bits (245), Expect = 4e-25
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 23/111 (20%)
Query: 26 EWWQTAIMYQIYPRSFRD----------------------VNGDGTGDMRGITEKLDHFV 63
+W + A+ YQI+P F + G GD+ GI E LD+
Sbjct: 7 DWVKHAVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMEDLDYIQ 66
Query: 64 DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
+LGI +++ P + + Y +Y VDP+ G F+ L++ AH R
Sbjct: 67 NLGINAIYFTPIFQSASNH-RYHTHDYYQVDPMLGGNEAFKELLDAAHQRN 116
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP}
SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Length = 583
Score = 97.4 bits (243), Expect = 7e-25
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 24/110 (21%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDGT---------------------GDMRGITEKLDHFVD 64
W + AI YQI+P F NGD GD++G+ + LDH
Sbjct: 126 AWVKDAIFYQIFPERFA--NGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSK 183
Query: 65 LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
LG+ +++ P + A YD +Y +DP FGD + L++ H RG
Sbjct: 184 LGVNAVYFTPLFKATTNH-KYDTEDYFQIDPQFGDKDTLKKLVDLCHERG 232
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase;
2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2
b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A*
1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A*
1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Length = 585
Score = 96.7 bits (241), Expect = 1e-24
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 25/111 (22%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDGT----------------------GDMRGITEKLDHFV 63
EW + A++YQI+P F NGD + GD++G+ ++L +
Sbjct: 126 EWAKEAVIYQIFPERFA--NGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64 DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
+LG+ +L+ P + + YD ++Y+ +DP FGD+ F L++EAH RG
Sbjct: 184 ELGVTALYFTPIFASPSHH-KYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus
stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB:
1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Length = 588
Score = 96.3 bits (240), Expect = 2e-24
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 24/110 (21%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDGT---------------------GDMRGITEKLDHFVD 64
+W + + YQI+P F NG+ + GD++GI + LD+ VD
Sbjct: 130 DWVKDTVWYQIFPERFA--NGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVD 187
Query: 65 LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
LGI +++ P + + YD ++Y +VDP FGD + LI+ H +G
Sbjct: 188 LGITGIYLTPIFRSPSNH-KYDTADYFEVDPHFGDKETLKTLIDRCHEKG 236
>3hje_A 704AA long hypothetical glycosyltransferase; trehalose
biosynthesis, maltooligoside trehalose synthase (M
family 13 glycoside hydrolases; 1.90A {Sulfolobus
tokodaii str}
Length = 704
Score = 96.3 bits (240), Expect = 2e-24
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 34 YQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAG-GADLGYDVSNYVD 92
Y++ P F + I +LD+FV+LG+ L++ P A G+ GYDV +Y
Sbjct: 7 YRLQPMKFSE-----------IRNRLDYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNT 55
Query: 93 VDPLFGDMHDFEILIEEAHSRG 114
++ G ++ LI+EA S+G
Sbjct: 56 INDELGGEEEYIRLIDEAKSKG 77
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase,
maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Length = 637
Score = 94.9 bits (235), Expect = 6e-24
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 28/120 (23%)
Query: 23 PQKEWWQTAIMYQIYPRSFRDVNGDG--------------TGDMRGITEKLDHFVDLGIE 68
+W + +++Y PR+ N G G + L LG +
Sbjct: 76 KTPDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVKSLGAD 135
Query: 69 SLWIQPFYPA------GGADLGYDVSNYVDVD--------PLFGDMHDFEILIEEAHSRG 114
++++ P G A Y V N +++D F +F+ +E H G
Sbjct: 136 AIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILG 195
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis,
glycoside hydrolase FA; 1.80A {Streptomyces coelicolor}
PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Length = 695
Score = 93.4 bits (232), Expect = 2e-23
Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 21/111 (18%)
Query: 24 QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGA-- 81
++E Y+ +PRS G R +L +G + +++ P +P G
Sbjct: 225 ERERALYGAWYEFFPRSE-GTPHTPHGTFRTAARRLPAIAAMGFDVVYLPPIHPIGTTHR 283
Query: 82 ------------------DLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
+G + + P G + DF+ + EA G
Sbjct: 284 KGRNNTLSATGDDVGVPWAIGSPEGGHDSIHPALGTLDDFDHFVTEAGKLG 334
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex,
glycosidase, hydrolase; HET: CE6 ACX; 1.65A
{Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A*
1h3g_A
Length = 601
Score = 93.0 bits (231), Expect = 3e-23
Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 26/114 (22%)
Query: 25 KEWWQTAIMYQIYPRSFRDVNGDGT---------------------GDMRGITEKLDHFV 63
+ + +YQI P F NGD + GD+RG + LD+
Sbjct: 101 QGFGPGDAIYQIMPDRFA--NGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIA 158
Query: 64 DLGIESLWIQPFYPAGGADL---GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
LG LW P A GY +++ +DP +G DF L EA RG
Sbjct: 159 GLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRG 212
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA;
1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB:
2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Length = 478
Score = 87.8 bits (218), Expect = 1e-21
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 23/110 (20%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDGT--------------GDMRGITEKLDHFVDLGIESLW 71
W++ +Y + F DG+ G +GI +KLD+ +G ++W
Sbjct: 4 ADWRSQSIYFLLTDRFA--RTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIW 61
Query: 72 IQP-------FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
I P G A GY + ++ +G D + L H RG
Sbjct: 62 ITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERG 111
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL
ABD; 1.70A {Geobacillus stearothermophilus} SCOP:
b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Length = 686
Score = 86.4 bits (214), Expect = 5e-21
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 33/120 (27%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDGT-----------------------GDMRGITEKLDHF 62
+ ++YQI F +GD T GD+ G+ +KL +
Sbjct: 4 ASVKGDVIYQIIIDRF--YDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYL 61
Query: 63 VDLGIESLWI-----QPFYPAGGADL---GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
LG+ ++W+ AG + GY ++ ++ FG+ F+ L+ +AH G
Sbjct: 62 KQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNG 121
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A
{Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1
b.71.1.1 c.1.8.1
Length = 680
Score = 85.7 bits (212), Expect = 1e-20
Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 34/124 (27%)
Query: 23 PQKEWWQTAIMYQIYPRSFRDVNGDGT--------------------GDMRGITEKLD-- 60
K + + ++YQI F +G+ + GD +GI K++
Sbjct: 4 LNKVNFTSDVVYQIVVDRFV--DGNTSNNPSGALFSSGCTNLRKYCGGDWQGIINKINDG 61
Query: 61 HFVDLGIESLWI-----QPFYPAGGADL-----GYDVSNYVDVDPLFGDMHDFEILIEEA 110
+ D+G+ ++WI F A GY ++ +P FG + DF+ L++ A
Sbjct: 62 YLTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAA 121
Query: 111 HSRG 114
H++G
Sbjct: 122 HAKG 125
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus circulans}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A*
1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A*
2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A
1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 85.7 bits (212), Expect = 1e-20
Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 35/125 (28%)
Query: 23 PQKEWWQTAIMYQIYPRSFRDVNGDGT--------------------GDMRGITEKLD-- 60
K+ + T ++YQI+ F +G+ GD +GI K++
Sbjct: 7 SNKQNFSTDVIYQIFTDRF--SDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDG 64
Query: 61 HFVDLGIESLWI-----QPFYPAGGADL------GYDVSNYVDVDPLFGDMHDFEILIEE 109
+ +G+ ++WI + + + GY ++ +P +G + DF+ LI
Sbjct: 65 YLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAA 124
Query: 110 AHSRG 114
AH++
Sbjct: 125 AHAKN 129
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular
transglucosylation, isomerase; HET: MLZ MLY; 1.90A
{Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Length = 720
Score = 85.8 bits (212), Expect = 1e-20
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 38 PRS---FRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQP-FYPAGGADLGYDVSNYVDV 93
+ + + + + L +F DLG+ L++ P + G++ GYDV ++ +
Sbjct: 2 ISATYRLQLNKNF---NFGDVIDNLWYFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRI 58
Query: 94 DPLFGDMHDFEILIEEAHSRG 114
+ G ++ LIE AH+ G
Sbjct: 59 NDELGGEKEYRRLIETAHTIG 79
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A
{Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1
c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A*
2d0g_A* 2d0h_A* 1izk_A
Length = 637
Score = 85.2 bits (211), Expect = 1e-20
Identities = 34/128 (26%), Positives = 49/128 (38%), Gaps = 42/128 (32%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDGT------------------------------------ 49
+W + +MYQI+P F NGD +
Sbjct: 128 DWLKNGVMYQIFPDRFY--NGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVF 185
Query: 50 --GDMRGITEKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
GD+ GI +KL + LG L++ P + A YD +Y+ VDP FGD + L
Sbjct: 186 FGGDLAGIDQKLGYIKKTLGANILYLNPIFKAPTNH-KYDTQDYMAVDPAFGDNSTLQTL 244
Query: 107 IEEAHSRG 114
I + HS
Sbjct: 245 INDIHSTA 252
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP:
b.71.1.1 c.1.8.1
Length = 484
Score = 84.0 bits (208), Expect = 3e-20
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 19/106 (17%)
Query: 28 WQTAIMYQIYPRSFRDVNGDGT------------GDMRGITEKLDHFVDLGIESLWIQP- 74
W+T +Y + F + T G +GI + LD+ +G ++WI P
Sbjct: 6 WRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPI 65
Query: 75 ------FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
G A GY DV+ FG + + L + H+RG
Sbjct: 66 TEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARG 111
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable,
family 13 glycosyl hydrolas; 1.60A
{Thermoanaerobacterium thermosulfurigenorganism_taxid}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A*
1ciu_A 1a47_A 1pj9_A* 1cgt_A
Length = 683
Score = 83.0 bits (205), Expect = 8e-20
Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 36/130 (27%)
Query: 19 QVELPQKEWWQTAIMYQIYPRSFRDVNGDGT--------------------GDMRGITEK 58
+ + T ++YQI F V+G+ + GD +GI K
Sbjct: 3 DTAVSNVVNYSTDVIYQIVTDRF--VDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINK 60
Query: 59 LD--HFVDLGIESLWIQP-------FYPAGGADL-----GYDVSNYVDVDPLFGDMHDFE 104
++ + +G+ ++WI P GY ++ +P FG DF+
Sbjct: 61 INDGYLTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQ 120
Query: 105 ILIEEAHSRG 114
LI AH+
Sbjct: 121 NLINTAHAHN 130
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
halophilic, N domain, starch binding, hydrolase; HET:
G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
3bcd_A* 3bcf_A
Length = 599
Score = 81.1 bits (200), Expect = 5e-19
Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 11/122 (9%)
Query: 4 RIFLAFLGFLSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFV 63
+ ++ FL S + A +++ + + + + E+
Sbjct: 101 QGYIEFLVNQSNYPQIPDQEVNHTILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELA 160
Query: 64 DLGIESLWIQPFY--PAGGADLGYDVSNYVD---------VDPLFGDMHDFEILIEEAHS 112
+ G ++W+ P AG D+GY + D V +G + E I+ H+
Sbjct: 161 EAGFTAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHN 220
Query: 113 RG 114
Sbjct: 221 ND 222
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability;
2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1
c.1.8.1
Length = 515
Score = 75.6 bits (186), Expect = 3e-17
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 32 IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNY 90
M Q F D + + ++ LGI +LW+ P Y +D+GY V +
Sbjct: 7 TMMQ----YFEWYLPDDGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDL 62
Query: 91 VD---------VDPLFGDMHDFEILIEEAHSRG 114
D V +G + I+ AH+ G
Sbjct: 63 YDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAG 95
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel,
hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1
c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A*
1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Length = 405
Score = 75.5 bits (186), Expect = 3e-17
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 34 YQIYPRSF-RDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVD 92
+Q+ + F + G + K+D G+ +W+ P ++ GY D
Sbjct: 1 HQVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSH-SVSNEGYMPGRLYD 59
Query: 93 VDP-LFGDMHDFEILIEEAHSRG 114
+D +G+ + + LI H +G
Sbjct: 60 IDASKYGNAAELKSLIGALHGKG 82
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase,
hydrolase, metal-binding, secreted; 1.40A {Bacillus
amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A
1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Length = 483
Score = 74.5 bits (183), Expect = 8e-17
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 14/94 (14%)
Query: 31 AIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSN 89
+ Q + DG + + +H D+GI ++WI P Y +D GY +
Sbjct: 3 GTLMQYF---EWYTPNDG-QHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYD 58
Query: 90 YVD---------VDPLFGDMHDFEILIEEAHSRG 114
D V +G + + I HSR
Sbjct: 59 LYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRN 92
>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A
{Streptococcus mutans} PDB: 3aic_A* 3aib_A*
Length = 844
Score = 74.0 bits (181), Expect = 1e-16
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 18/100 (18%)
Query: 27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-------- 78
++ +Q + + I + +D F + G+ + P Y +
Sbjct: 613 MFEGFSNFQAFATKKEEYTN------VVIAKNVDKFAEWGVTDFEMAPQYVSSTDGSFLD 666
Query: 79 GGADLGYDVSNYVD----VDPLFGDMHDFEILIEEAHSRG 114
GY ++ D +G D I+ HS+G
Sbjct: 667 SVIQNGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSKG 706
>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside
hydrolase, transferase; 1.77A {Bifidobacterium
adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A*
2gdu_A*
Length = 504
Score = 72.5 bits (178), Expect = 4e-16
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 44 VNGDGTGDMRGITEKLDHFVDLGIESLWIQPFY-PAGGADLGYDVSNYVDVDPLFGDMHD 102
+ G G ++ +T+ L D + + I PF+ P GAD G+D ++ VD G D
Sbjct: 11 ADRLGDGTIKSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDERLGSWDD 70
Query: 103 FEILIEE 109
L +
Sbjct: 71 VAELSKT 77
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A
1ud6_A 1ud8_A 1ud3_A
Length = 480
Score = 71.1 bits (174), Expect = 1e-15
Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 11/82 (13%)
Query: 43 DVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVD--------- 92
+ DG + + D GI ++WI P Y AD+GY + D
Sbjct: 14 HLENDG-QHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGT 72
Query: 93 VDPLFGDMHDFEILIEEAHSRG 114
V +G E I S
Sbjct: 73 VRTKYGTKAQLERAIGSLKSND 94
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase,
alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A*
2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Length = 485
Score = 67.2 bits (164), Expect = 2e-14
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 43 DVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVD--------- 92
+ DG + + GI ++WI P + D+GY + D
Sbjct: 16 YLPNDG-NHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGT 74
Query: 93 VDPLFGDMHDFEILIEEAHSRG 114
V +G + + + G
Sbjct: 75 VRTKYGTRSQLQAAVTSLKNNG 96
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola
(beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A
{Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A*
1mxd_A* 3qgv_A*
Length = 435
Score = 59.8 bits (145), Expect = 1e-11
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADL 83
E + ++ Q + + DV G G I K+ + + GI ++W+ P +GG +
Sbjct: 5 ELEEGGVIMQAF---YWDVPGGG-IWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSM 60
Query: 84 GYDVSNYVD---------VDPLFGDMHDFEILIEEAHSRG 114
GYD +Y D V+ FG + LI+ AH+ G
Sbjct: 61 GYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYG 100
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif,
hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus
subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Length = 422
Score = 57.1 bits (138), Expect = 8e-11
Identities = 9/75 (12%), Positives = 20/75 (26%), Gaps = 10/75 (13%)
Query: 50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL----------GYDVSNYVDVDPLFGD 99
+ + D G ++ P + Y ++Y + G
Sbjct: 14 WSFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGT 73
Query: 100 MHDFEILIEEAHSRG 114
+F+ + A G
Sbjct: 74 EQEFKEMCAAAEEYG 88
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta
sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1
c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A*
1qi4_A* 2amg_A 1qpk_A*
Length = 527
Score = 48.5 bits (115), Expect = 8e-08
Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 11/82 (13%)
Query: 43 DVNGDGTGDM-RGITEKLDHFVDLGIESLWIQPFY---------PAGGADLGYDVSNYVD 92
+V + D + ++ G ++W+ + G GY ++ +
Sbjct: 26 NVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDF-N 84
Query: 93 VDPLFGDMHDFEILIEEAHSRG 114
+ +G G
Sbjct: 85 KNGRYGSDAQLRQAASALGGAG 106
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics,
center for structural genomics of infectious diseases,
unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella
enterica subsp}
Length = 618
Score = 41.9 bits (99), Expect = 2e-05
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 28 WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLG---IESLWIQPFYPAGGADLG 84
W+ A++Y+++ +F G R KL + +LG IE + + F G G
Sbjct: 134 WEQAVVYEMHTGTFTP-----EGTFRAAIAKLPYLAELGVTVIEVMPVAQF--GGERGWG 186
Query: 85 YDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
YD +G DF+ I+ AH G
Sbjct: 187 YDGVLLYAPHSAYGTPDDFKAFIDAAHGYG 216
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel,
alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus
solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A*
3vgh_A* 3vgg_A* 1eha_A
Length = 558
Score = 41.5 bits (98), Expect = 2e-05
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 26 EW--WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLG---IESLWIQPFYPAGG 80
+ + I+Y+I+ +F G G+ KLD+ DLG IE + I F G
Sbjct: 95 TFLKKEDLIIYEIHVGTFTP-----EGTFEGVIRKLDYLKDLGITAIEIMPIAQF--PGK 147
Query: 81 ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
D GYD V +G F L++EAH +G
Sbjct: 148 RDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKG 181
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase;
HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis}
SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A*
1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Length = 448
Score = 38.9 bits (90), Expect = 2e-04
Identities = 6/65 (9%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 53 RGITEKLDHFV-DLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEILIEE 109
+ + ++ + ++ G ++ + P G ++ G+ F ++
Sbjct: 14 QDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNR 73
Query: 110 AHSRG 114
+ G
Sbjct: 74 CSAAG 78
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase,
protein-carbohydrate complex, desiccation resistance;
HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A*
2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Length = 602
Score = 38.4 bits (90), Expect = 3e-04
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 28 WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLG---IESLWIQPFYPAGGADLG 84
+ Y+++ +F G R EKL + +LG I+ + + F G G
Sbjct: 124 LADCVFYEVHVGTFTP-----EGTYRAAAEKLPYLKELGVTAIQVMPLAAF--DGQRGWG 176
Query: 85 YDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
YD + + +G D L++ AH G
Sbjct: 177 YDGAAFYAPYAPYGRPEDLMALVDAAHRLG 206
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism,
4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio
molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A
1viw_A*
Length = 471
Score = 34.0 bits (77), Expect = 0.009
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 5/67 (7%)
Query: 53 RGITEKLDHFV-DLGIESLWIQP----FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILI 107
I ++ + F+ G + I P G ++ GD F +
Sbjct: 22 NDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDMT 81
Query: 108 EEAHSRG 114
+ G
Sbjct: 82 RRCNDAG 88
>1hx0_A Alpha amylase (PPA); inhibitor, carbohydrate, pancreas, hydrolase;
HET: GLC AC1 BGC MAL; 1.38A {Sus scrofa} SCOP: b.71.1.1
c.1.8.1 PDB: 1wo2_A* 1ua3_A* 1kxq_A 1kxt_A 1kxv_A
1jfh_A* 1vah_A* 1ppi_A* 3l2m_A* 3l2l_A* 1dhk_A* 1ose_A*
1pig_A* 1pif_A* 1bvn_P 3oli_A* 3old_A* 3olg_A* 3ole_A*
3ij8_A* ...
Length = 496
Score = 33.6 bits (76), Expect = 0.013
Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 55 ITEKLDHFVDLGIESLWIQP-------FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILI 107
E + G + + P P+ Y +Y + G+ ++F ++
Sbjct: 25 ALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSY-KLCTRSGNENEFRDMV 83
Query: 108 EEAHSRG 114
++ G
Sbjct: 84 TRCNNVG 90
>3klk_A Glucansucrase; native form, open conformation, multidomain protein,
glycosyltransferase, transferase; 1.65A {Lactobacillus
reuteri} PDB: 3kll_A* 3hz3_A*
Length = 1039
Score = 32.0 bits (72), Expect = 0.046
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 12/72 (16%)
Query: 55 ITEKLDHFVDLGIESLWIQPFYPAGGA--------DLGYDVSNYVD----VDPLFGDMHD 102
I + D F GI + + P Y + D GY ++ D +G D
Sbjct: 688 IAQNADLFKSWGITTFELAPQYNSSKDGTFLDSIIDNGYAFTDRYDLGMSTPNKYGSDED 747
Query: 103 FEILIEEAHSRG 114
++ H G
Sbjct: 748 LRNALQALHKAG 759
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase,
cell WALL, peptidoglycan-anchor, secreted; 2.10A
{Streptococcus agalactiae COH1} PDB: 3fax_A*
Length = 877
Score = 29.1 bits (65), Expect = 0.47
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 21 ELPQKEWWQTAIMYQIYPRSF--RDVNGDGTGDMRG----ITEKLDHFVDLGIESLWIQP 74
++ + Q A++Y+ + R F + G +EKLD+ LG+ + + P
Sbjct: 258 KIANFKGRQDAVIYEAHVRDFTSDQSLDGKLKNQLGTFAAFSEKLDYLQKLGVTHIQLLP 317
Query: 75 FY 76
Sbjct: 318 VL 319
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A
{Leuconostoc mesenteroides} PDB: 3tto_A*
Length = 1108
Score = 28.5 bits (63), Expect = 0.78
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 8/41 (19%)
Query: 55 ITEKLDHFVDLGIESLWIQPFY--------PAGGADLGYDV 87
I + D F + GI S + P Y D GY
Sbjct: 855 IAKNADVFNNWGITSFEMAPQYRSSGDHTFLDSTIDNGYAF 895
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE;
1.70A {Oryza sativa japonica group} PDB: 3amk_A
Length = 755
Score = 28.1 bits (63), Expect = 0.90
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 59 LDHFVDLG---IESLWIQ--PFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
L ++ + I +Y A GY V+N+ V G D + L+++AHS
Sbjct: 208 LPRIRANNYNTVQLMAIMEHSYY----ASFGYHVTNFFAVSSRSGTPEDLKYLVDKAHSL 263
Query: 114 G 114
G
Sbjct: 264 G 264
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin
degradation, cortalcerone/microthecin forming,
metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB:
4a7y_A* 4a7z_A*
Length = 900
Score = 28.1 bits (61), Expect = 1.0
Identities = 11/98 (11%), Positives = 26/98 (26%), Gaps = 9/98 (9%)
Query: 24 QKEWWQTAIMYQ------IYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYP 77
++ WQ ++ + + +G+ D + + + W +
Sbjct: 199 SEQLWQRDVVGTRHLVHEVAIVPAAETDGEMRFDQIILAGRDGVDCLWYDGARWQRHLVG 258
Query: 78 AGG---ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHS 112
G Y + V + D + E H
Sbjct: 259 TGLPEERGDPYWGAGSAAVGRVGDDYAGYICSAEAFHG 296
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Length = 714
Score = 27.3 bits (61), Expect = 1.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 54 GITEKLDHFVDLGIESLWIQPFY 76
EKLD+ DLG+ + + P
Sbjct: 181 AFIEKLDYLKDLGVTHIQLLPVL 203
>3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein
transport, type III secretion; 2.30A {Bacillus subtilis}
Length = 382
Score = 27.1 bits (60), Expect = 2.0
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 34 YQIYPRSFRDVN-GDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVD 92
++ + ++ + GI F G+ + WI LGY V +
Sbjct: 116 GELLLDHYLAMSPTPEDDLIEGIETVEPSF---GLPAKWISEAVKDEADMLGYTVVDPAS 172
Query: 93 V 93
V
Sbjct: 173 V 173
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Length = 1014
Score = 27.1 bits (60), Expect = 2.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 54 GITEKLDHFVDLGIESLWIQPFY 76
EKLD+ DLG+ + + P
Sbjct: 488 AFIEKLDYLKDLGVTHIQLLPVL 510
>1s21_A ORF2; predominantly beta-strand, chaperone; 2.00A {Pseudomonas
syringae PV} SCOP: d.166.1.4
Length = 206
Score = 26.7 bits (58), Expect = 2.3
Identities = 14/69 (20%), Positives = 22/69 (31%)
Query: 34 YQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDV 93
++ + G + H L SL + A A GY S++V
Sbjct: 100 EELQESPYAQHIGARPDQADAYRPRTAHVSSLNTPSLNVMAGQGALSALRGYAGSDHVTT 159
Query: 94 DPLFGDMHD 102
+ GD D
Sbjct: 160 EMRLGDFLD 168
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like
fold, bacterial flagellum BIO bacterial flagellum
protein export; 2.80A {Salmonella typhimurium}
Length = 389
Score = 26.7 bits (59), Expect = 2.4
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 34 YQIYPRSFRDVN-GDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVD 92
YP + +N G G + G F G++++WI+ G+ V
Sbjct: 127 GDAYPGRWLAINPGTAAGTLPGEKTVDPAF---GLDAIWIESALKEQAQIQGFTVVEAST 183
Query: 93 V 93
V
Sbjct: 184 V 184
>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
2zkq_s 1s1h_S 3jyv_S*
Length = 154
Score = 26.2 bits (58), Expect = 3.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 100 MHDFEILIEEAHSRGKPKRTFREVT 124
M D E+ E A KRTFR+ +
Sbjct: 1 MADVEVETEVAAGAQPKKRTFRKYS 25
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural
genomics consortium, SGC, activator, alternative
splicing, chromatin regulator, nucleus, polymorphism,
protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A
Length = 355
Score = 26.5 bits (58), Expect = 3.1
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYD 86
RG +K VD ++ L + F Y
Sbjct: 261 SRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQ 295
>3myd_A Flagellar biosynthesis protein FLHA; flagellar export, type III
secretion, cytoplasmic FRAG protein transport; 2.40A
{Helicobacter pylori}
Length = 365
Score = 26.3 bits (58), Expect = 3.6
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 34 YQIYPRSFRDVN-GDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVD 92
+ P F +N G ++ GI K F G+++LWI GY + +
Sbjct: 98 GMVMPDKFLAMNTGFVNREIEGIPTKEPAF---GMDALWIDAKNKEEAIIQGYTIIDPST 154
Query: 93 V 93
V
Sbjct: 155 V 155
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP;
1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A*
1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Length = 385
Score = 25.9 bits (58), Expect = 4.6
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 90 YVDVDPLFGDMHDFEILIEEAH 111
+D P+ D + EA
Sbjct: 324 LMDTSPIAPDEVRAAERLLEAG 345
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2)
tetramer, riken structural genomics/proteomi initiative,
RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP:
c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Length = 438
Score = 26.0 bits (58), Expect = 4.8
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 97 FGDMHDFEILIEEAHSRG 114
G + D E AH G
Sbjct: 208 LGALEDLGPFAEAAHGAG 225
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide,
amylase, starch, carbohydrate; 1.65A {Bacillus
acidopullulyticus}
Length = 921
Score = 25.9 bits (57), Expect = 5.8
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 48 GTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNY 90
GT + +D +LGI ++ +QP D +
Sbjct: 464 GTKGPDHVKTGIDSLKELGITTVQLQPVEEFNSIDETQPDTYN 506
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A
{Pseudomonas aeruginosa}
Length = 319
Score = 25.0 bits (55), Expect = 9.3
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 68 ESLWIQPFYPAGGADLGYDVSNYVD---VDPLFGDMHDFEILIEEAHSR 113
ES+ I+P+ A GA +D N D V ++ + +IE+ + R
Sbjct: 67 ESVMIRPYNMATGAAP-FDSLNVADIGDVAINTFNLLEAVRIIEQEYDR 114
>2x49_A INVA, invasion protein INVA; protein transport, transport,
pathogenesis; 1.50A {Salmonella enterica subsp} PDB:
2x4a_A* 3lw9_A
Length = 333
Score = 25.0 bits (55), Expect = 9.9
Identities = 9/63 (14%), Positives = 16/63 (25%), Gaps = 9/63 (14%)
Query: 34 YQIYPRSFRDVN-GDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVD 92
+ +Y R VN D + W+ +LGY +
Sbjct: 71 FTVYFDLMRVVNYSDEVVSFGINPTIHQQG---SSQYFWVTHEEGEKLRELGYVL----- 122
Query: 93 VDP 95
+
Sbjct: 123 RNA 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.142 0.447
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,238,024
Number of extensions: 129164
Number of successful extensions: 425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 82
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.3 bits)