RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12953
(136 letters)
>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus
[TaxId: 1396]}
Length = 479
Score = 126 bits (316), Expect = 6e-36
Identities = 44/91 (48%), Positives = 63/91 (69%)
Query: 24 QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
+K+WW+ +++YQIYPRSF D NGDG GD+RGI KLD+ +LGI+ +W+ P Y + D
Sbjct: 2 EKQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDN 61
Query: 84 GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYD+S+Y + FG M D++ L+ E H R
Sbjct: 62 GYDISDYCKIMNEFGTMEDWDELLHEMHERN 92
>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella
sp., lx3 [TaxId: 576]}
Length = 478
Score = 125 bits (314), Expect = 1e-35
Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
Query: 21 ELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG 80
E P WW+ A+ YQIYPRSF+D N DG GD+RGI EKLD+ LGI+++WI P Y +
Sbjct: 1 EYP--AWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINPHYDSPN 58
Query: 81 ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
D GYD+SNY + +G M DF+ L+ E R
Sbjct: 59 TDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRN 92
>d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga
maritima [TaxId: 2336]}
Length = 391
Score = 107 bits (268), Expect = 2e-29
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 32 IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYV 91
I YQIY RSFRD N DG GD RG+ + + +LGI+ +W+ P + + GYDV ++
Sbjct: 2 IGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFS-SISFHGYDVVDFY 60
Query: 92 DVDPLFGDMHDFEILIEEAHSRG 114
+G +F+ +IE H G
Sbjct: 61 SFKAEYGSEREFKEMIEAFHDSG 83
>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix
orenii [TaxId: 31909]}
Length = 409
Score = 102 bits (255), Expect = 1e-27
Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 9/96 (9%)
Query: 27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHF--------VDLGIESLWIQPFYPA 78
+ + Y+I+ RSF D +GDG GD++GI EKLD+ DLG+ +W+ P + +
Sbjct: 1 FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKS 60
Query: 79 GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GYDV++Y ++P +G + DF L+E AH RG
Sbjct: 61 PSYH-GYDVTDYYKINPDYGTLEDFHKLVEAAHQRG 95
>d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima
[TaxId: 2336]}
Length = 572
Score = 93.9 bits (232), Expect = 6e-24
Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 28/117 (23%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDG--------------TGDMRGITEKLDHFVDLGIESLW 71
+W + +++Y PR+ N G G + L LG ++++
Sbjct: 79 DWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVKSLGADAIY 138
Query: 72 IQPFYPA------GGADLGYDVSNYVDVDPL--------FGDMHDFEILIEEAHSRG 114
+ P G A Y V N +++D F +F+ +E H G
Sbjct: 139 LLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILG 195
>d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea
[TaxId: 489]}
Length = 554
Score = 90.4 bits (223), Expect = 8e-23
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 26 EWW--QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGA 81
+W + Y F GD++G+ +K+ +F +LG+ L + P + P G +
Sbjct: 91 DWILSNKQVGGVCYVDLF-------AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKS 143
Query: 82 DLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
D GY VS+Y DV+P G + D +I H G
Sbjct: 144 DGGYAVSSYRDVNPALGTIGDLREVIAALHEAG 176
>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase,
central domain {Archaeon Sulfolobus solfataricus, km1
[TaxId: 2287]}
Length = 400
Score = 88.2 bits (217), Expect = 3e-22
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYP-AGGADLGY 85
+ I+Y+I+ +F G G+ KLD+ DLGI ++ I P G D GY
Sbjct: 8 KKEDLIIYEIHVGTFTP-----EGTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGY 62
Query: 86 DVSNYVDVDPLFGDMHDFEILIEEAHSRGK 115
D V +G F L++EAH +G
Sbjct: 63 DGVYLYAVQNSYGGPEGFRKLVDEAHKKGL 92
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
{Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 653
Score = 86.1 bits (213), Expect = 3e-21
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 50 GDMRGITEKLDHFVDLGIESLWIQP-FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIE 108
+ + + L +F DLG+ L++ P + G++ GYDV ++ ++ G ++ LIE
Sbjct: 14 FNFGDVIDNLWYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIE 73
Query: 109 EAHSRG 114
AH+ G
Sbjct: 74 TAHTIG 79
>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 382
Score = 85.1 bits (209), Expect = 3e-21
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 20/107 (18%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDGT-------------------GDMRGITEKLDHFVDLG 66
+W + + YQI+P F + N + GD++GI + LD+ VDLG
Sbjct: 7 DWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLG 66
Query: 67 IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
I +++ P + ++ YD ++Y +VDP FGD + LI+ H +
Sbjct: 67 ITGIYLTPIFR-SPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEK 112
>d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain
{Flavobacterium sp. 92 [TaxId: 197856]}
Length = 422
Score = 85.2 bits (209), Expect = 5e-21
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 22/112 (19%)
Query: 24 QKEWWQTAIMYQIYPRSFRDVN-------------------GDGTGDMRGITEKLDHFVD 64
++ + +YQI P F + + G GD+RG + LD+
Sbjct: 5 RQGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIAG 64
Query: 65 LGIESLWIQPFYP---AGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
LG LW P A + GY +++ +DP +G DF L EA R
Sbjct: 65 LGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKR 116
>d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain
{Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}
Length = 382
Score = 84.7 bits (208), Expect = 5e-21
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 21/108 (19%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDGT--------------------GDMRGITEKLDHFVDL 65
EW + A++YQI+P F + + GD++G+ ++L + +L
Sbjct: 6 EWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEEL 65
Query: 66 GIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
G+ +L+ P + + YD ++Y+ +DP FGD+ F L++EAH R
Sbjct: 66 GVTALYFTPIFASPSHH-KYDTADYLAIDPQFGDLPTFRRLVDEAHRR 112
>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas
amyloderamosa [TaxId: 32043]}
Length = 475
Score = 81.6 bits (200), Expect = 1e-19
Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 24/112 (21%)
Query: 27 WWQTAIMYQIYPRSFRD----VNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYP----- 77
+ ++Y+++ R F + + G G K + LG+ ++ P
Sbjct: 13 AQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQNDA 72
Query: 78 --------AGGADLGYDVSNYVDVDPLF-------GDMHDFEILIEEAHSRG 114
A GY NY D + G +F+ +++ H+ G
Sbjct: 73 NDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAG 124
>d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum
vulgare), AMY1 isozyme [TaxId: 4513]}
Length = 347
Score = 80.0 bits (196), Expect = 2e-19
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 34 YQIYPRSF-RDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVD 92
+Q+ + F + G + K+D G+ +W+ P + + GY D
Sbjct: 1 HQVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNE-GYMPGRLYD 59
Query: 93 VDP-LFGDMHDFEILIEEAH 111
+D +G+ + + LI H
Sbjct: 60 IDASKYGNAAELKSLIGALH 79
>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase,
central domain {Deinococcus radiodurans [TaxId: 1299]}
Length = 420
Score = 80.2 bits (196), Expect = 2e-19
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 23 PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYP-AGGA 81
+ Y+++ +F G R EKL + +LG+ ++ + P G
Sbjct: 9 WHGIKLADCVFYEVHVGTFTP-----EGTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQR 63
Query: 82 DLGYDVSNYVDVDPLFGDMHDFEILIEEAH 111
GYD + + +G D L++ AH
Sbjct: 64 GWGYDGAAFYAPYAPYGRPEDLMALVDAAH 93
>d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium
adolescentis [TaxId: 1680]}
Length = 434
Score = 80.2 bits (196), Expect = 3e-19
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDV 87
+ + Y G G ++ +T+ L D + + I PF+ GAD G+D
Sbjct: 2 KNKVQLITYADRL------GDGTIKSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDP 55
Query: 88 SNYVDVDPLFGDMHDFEILIEEAH 111
++ VD G D L + +
Sbjct: 56 IDHTKVDERLGSWDDVAELSKTHN 79
>d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain
{Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}
Length = 382
Score = 77.1 bits (188), Expect = 3e-18
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 20/107 (18%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDGT-------------------GDMRGITEKLDHFVDLG 66
W + AI YQI+P F + + GD++G+ + LDH LG
Sbjct: 5 AWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLG 64
Query: 67 IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
+ +++ P + + YD +Y +DP FGD + L++ H R
Sbjct: 65 VNAVYFTPLFK-ATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHER 110
>d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger,
acid amylase [TaxId: 5061]}
Length = 381
Score = 75.1 bits (183), Expect = 2e-17
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 19/104 (18%)
Query: 27 WWQTAIMYQIYPRSFRDVNGDGT------------GDMRGITEKLDHFVDLGIESLWIQP 74
W+T +Y + F + T G +GI + LD+ +G ++WI P
Sbjct: 5 SWRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISP 64
Query: 75 FYPA-------GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAH 111
G A GY DV+ FG + + L + H
Sbjct: 65 ITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALH 108
>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme,
central domain {Escherichia coli [TaxId: 562]}
Length = 396
Score = 75.0 bits (183), Expect = 2e-17
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 34 YQIYPRSF-RDVNGDGTGDMRGITEKL-DHFVDLGIESLWIQPFYPAGGAD-LGYDVSNY 90
Y+++ S+ R + + R + ++L + +G L + P GY +
Sbjct: 20 YEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGL 79
Query: 91 VDVDPLFGDMHDFEILIEEAH 111
FG DF I+ AH
Sbjct: 80 YAPTRRFGTRDDFRYFIDAAH 100
>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus
oryzae, Taka-amylase [TaxId: 5062]}
Length = 381
Score = 73.9 bits (180), Expect = 4e-17
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 19/104 (18%)
Query: 27 WWQTAIMYQIYPRSFRDVNGDGT------------GDMRGITEKLDHFVDLGIESLWIQP 74
W++ +Y + F +G T G +GI +KLD+ +G ++WI P
Sbjct: 5 DWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITP 64
Query: 75 FYP-------AGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAH 111
G A GY + ++ +G D + L H
Sbjct: 65 VTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALH 108
>d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain
{Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}
Length = 432
Score = 74.4 bits (181), Expect = 4e-17
Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 38/130 (29%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDG------------------------------------T 49
+W + +MYQI+P F + +
Sbjct: 6 DWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFG 65
Query: 50 GDMRGITEKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIE 108
GD+ GI +KL + LG L++ P + + YD +Y+ VDP FGD + LI
Sbjct: 66 GDLAGIDQKLGYIKKTLGANILYLNPIFK-APTNHKYDTQDYMAVDPAFGDNSTLQTLIN 124
Query: 109 EAHSRGKPKR 118
+ HS +
Sbjct: 125 DIHSTANGPK 134
>d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase
{Bacillus stearothermophilus, maltogenic alpha-amylase
[TaxId: 1422]}
Length = 407
Score = 71.7 bits (174), Expect = 3e-16
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 29/117 (24%)
Query: 26 EWWQTAIMYQIYPRSFRDVNGDGT---------------------GDMRGITEKLDHFVD 64
+ ++YQI F D + GD+ G+ +KL +
Sbjct: 4 ASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQ 63
Query: 65 LGIESLWIQPFYPAGGADL--------GYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
LG+ ++W+ P GY ++ ++ FG+ F+ L+ +AH
Sbjct: 64 LGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQN 120
>d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase
{Thermoanaerobacterium [TaxId: 28895]}
Length = 406
Score = 70.1 bits (170), Expect = 8e-16
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 32/122 (26%)
Query: 23 PQKEWWQTAIMYQIYPRSFRDVNGDGT------------------GDMRGITEKLD--HF 62
+ T ++YQI F D N GD +GI K++ +
Sbjct: 7 SNVVNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYL 66
Query: 63 VDLGIESLWIQP------------FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEA 110
+G+ ++WI + + GY ++ +P FG DF+ LI A
Sbjct: 67 TGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTA 126
Query: 111 HS 112
H+
Sbjct: 127 HA 128
>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera
(Bacillus amyloliquefaciens) and (Bacillus
licheniformis) [TaxId: 1390]}
Length = 393
Score = 67.3 bits (163), Expect = 8e-15
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 43 DVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVD--------- 92
DG + + +H D+GI ++WI P Y +D GY + D
Sbjct: 12 YTPNDG-QHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGT 70
Query: 93 VDPLFGDMHDFEILIEEAHSRG 114
V +G + + I HSR
Sbjct: 71 VRTKYGTKSELQDAIGSLHSRN 92
>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp.,
ksm-k38 [TaxId: 1409]}
Length = 390
Score = 65.9 bits (159), Expect = 3e-14
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 11/83 (13%)
Query: 43 DVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVD--------- 92
+ DG + + D GI ++WI P Y AD+GY + D
Sbjct: 14 HLENDG-QHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGT 72
Query: 93 VDPLFGDMHDFEILIEEAHSRGK 115
V +G E I S
Sbjct: 73 VRTKYGTKAQLERAIGSLKSNDI 95
>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 393
Score = 65.4 bits (158), Expect = 4e-14
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 47 DGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVD---------VDPL 96
D + + ++ LGI +LW+ P Y +D+GY V + D V
Sbjct: 18 DDGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTK 77
Query: 97 FGDMHDFEILIEEAHSRG 114
+G + I+ AH+ G
Sbjct: 78 YGTKAQYLQAIQAAHAAG 95
>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707
[TaxId: 1416]}
Length = 394
Score = 63.5 bits (153), Expect = 2e-13
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 43 DVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVD--------- 92
+ DG + + GI ++WI P + D+GY + D
Sbjct: 12 YLPNDG-NHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGT 70
Query: 93 VDPLFGDMHDFEILIEEAHSRG 114
V +G + + + G
Sbjct: 71 VRTKYGTRSQLQAAVTSLKNNG 92
>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan
maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}
Length = 357
Score = 61.1 bits (147), Expect = 1e-12
Identities = 10/92 (10%), Positives = 27/92 (29%), Gaps = 12/92 (13%)
Query: 34 YQIYPRSFR-DVNGDGTGDM-RGITEKLDHFVDLGIESLWIQPFYPAGGADL-------- 83
+I + F +V + D + ++ G ++W+ + +
Sbjct: 16 DEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGG 75
Query: 84 -GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
GY ++ + + +G G
Sbjct: 76 EGYFWHDF-NKNGRYGSDAQLRQAASALGGAG 106
>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon
Pyrococcus woesei [TaxId: 2262]}
Length = 361
Score = 60.7 bits (146), Expect = 2e-12
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 47 DGTGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVD---------VDP 95
G I K+ + + GI ++W+ P +GG +GYD +Y D V+
Sbjct: 22 GGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVET 81
Query: 96 LFGDMHDFEILIEEAHSRG 114
FG + LI+ AH+ G
Sbjct: 82 RFGSKEELVRLIQTAHAYG 100
>d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae
[TaxId: 573]}
Length = 563
Score = 59.8 bits (143), Expect = 4e-12
Identities = 8/105 (7%), Positives = 22/105 (20%), Gaps = 13/105 (12%)
Query: 23 PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRG-----------ITEKLDHFVDLGIESLW 71
K +++ + R + ++RG + + L G+ +
Sbjct: 14 KTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSASGVTHIE 73
Query: 72 IQPF--YPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
+ P L + +
Sbjct: 74 LLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDS 118
Score = 24.8 bits (52), Expect = 5.1
Identities = 10/92 (10%), Positives = 26/92 (28%), Gaps = 1/92 (1%)
Query: 19 QVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA 78
++ Q + + F G+ +T+ + + +
Sbjct: 90 VADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQ 149
Query: 79 GGADL-GYDVSNYVDVDPLFGDMHDFEILIEE 109
+ GYD +Y + + + I+E
Sbjct: 150 TDSYNWGYDPFHYTVPEGSYATDPEGTARIKE 181
>d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus
subtilis [TaxId: 1423]}
Length = 344
Score = 55.3 bits (132), Expect = 2e-10
Identities = 8/69 (11%), Positives = 19/69 (27%), Gaps = 10/69 (14%)
Query: 53 RGITEKLDHFVDLGIESLWIQPFYPAGGADL----------GYDVSNYVDVDPLFGDMHD 102
+ + D G ++ P + Y ++Y + G +
Sbjct: 17 NTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQE 76
Query: 103 FEILIEEAH 111
F+ + A
Sbjct: 77 FKEMCAAAE 85
>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase
{Pseudoalteromonas haloplanktis (Alteromonas
haloplanktis) [TaxId: 228]}
Length = 354
Score = 46.8 bits (110), Expect = 1e-07
Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 4/60 (6%)
Query: 57 EKLDHFVDLGIESLWIQPFY---PAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
E + G ++ + P Y +Y ++ G+ F ++ +
Sbjct: 19 ECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY-ELQSRGGNRAQFIDMVNRCSAA 77
>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 403
Score = 45.7 bits (107), Expect = 3e-07
Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 57 EKLDHFVDLGIESLWIQPFY-------PAGGADLGYDVSNYVDVDPLFGDMHDFEILIEE 109
E + G + + P P+ Y +Y + G+ ++F ++
Sbjct: 27 ECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSY-KLCTRSGNENEFRDMVTR 85
Query: 110 AHSRG 114
++ G
Sbjct: 86 CNNVG 90
>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm
(Tenebrio molitor), larva [TaxId: 7067]}
Length = 378
Score = 41.4 bits (96), Expect = 9e-06
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 53 RGITEKLDHFV-DLGIESLWIQPFY-----PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
I ++ + F+ G + I P Y +Y ++ GD F +
Sbjct: 22 NDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSY-IINTRSGDESAFTDM 80
Query: 107 IEEAHSRG 114
+ G
Sbjct: 81 TRRCNDAG 88
>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic
domain {Thermotoga maritima [TaxId: 2336]}
Length = 348
Score = 25.5 bits (55), Expect = 2.8
Identities = 6/49 (12%), Positives = 14/49 (28%)
Query: 55 ITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDF 103
+ L + E I Y D ++ V+ + + +
Sbjct: 25 TLKNLKLAKNFPFEVFQIDDAYEKDIGDWLVTRGDFPSVEEMAKVIAEN 73
>d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase
{Shewanella massilia [TaxId: 76854]}
Length = 627
Score = 25.0 bits (53), Expect = 4.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 93 VDPLFGDMHDFEILIEEAHSRGKPKRTFREVT 124
V+PLF + DFEI A GK K R +
Sbjct: 507 VEPLFDSLSDFEIFTRFAAVLGKEKEYTRNMG 538
>d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 525
Score = 24.7 bits (53), Expect = 4.8
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 88 SNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTF 120
++ + D +FG ++ + I EA+ P
Sbjct: 107 TDMQESDIVFGGVNKLKDAIHEAYEMFHPAAIG 139
>d1s21a_ d.166.1.4 (A:) AvrPphF ORF2, a type III effector
{Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
Length = 176
Score = 23.8 bits (51), Expect = 7.6
Identities = 14/68 (20%), Positives = 22/68 (32%)
Query: 35 QIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD 94
++ + G + H L SL + A A GY S++V +
Sbjct: 71 ELQESPYAQHIGARPDQADAYRPRTAHVSSLNTPSLNVMAGQGALSALRGYAGSDHVTTE 130
Query: 95 PLFGDMHD 102
GD D
Sbjct: 131 MRLGDFLD 138
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima
[TaxId: 2336]}
Length = 247
Score = 23.9 bits (51), Expect = 8.6
Identities = 12/94 (12%), Positives = 23/94 (24%), Gaps = 20/94 (21%)
Query: 18 CQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVD-LGIESLWIQPFY 76
+ +P E Q R + + V G + W+
Sbjct: 161 LNINVPAGEIKGWRFTRQ---------------SRRRWNDYFEERVSPFGEKYYWMMGEV 205
Query: 77 PAGGADLGYDV----SNYVDVDPLFGDMHDFEIL 106
D YV + P+ + + + L
Sbjct: 206 IEDDDRDDVDYKAVREGYVSITPIHPFLTNEQCL 239
>d1jc4a_ d.32.1.4 (A:) Methylmalonyl-CoA epimerase
{Propionibacterium shermanii [TaxId: 1752]}
Length = 145
Score = 23.4 bits (49), Expect = 9.5
Identities = 10/74 (13%), Positives = 26/74 (35%)
Query: 12 FLSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLW 71
L+ QV++ ++ + + + R + I + G++ L+
Sbjct: 54 KLTEHMTQVQVMAPLNDESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRERGVQLLY 113
Query: 72 IQPFYPAGGADLGY 85
+P GG + +
Sbjct: 114 DEPKLGTGGNRINF 127
>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 23.0 bits (49), Expect = 9.8
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 98 GDMHDFEILIEEAHSRGKP--KRTFREVTKSFANNQGRYVR 136
GD ++ + + + K + F+ + + + G Y R
Sbjct: 39 GDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTR 79
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.142 0.447
Gapped
Lambda K H
0.267 0.0400 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 555,429
Number of extensions: 25535
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 46
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)