RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12956
(370 letters)
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 51.2 bits (123), Expect = 2e-09
Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 99 LIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFW 158
L+V +++I G A F ++ E ++ S+Y+ FV+ +T+G+GDY P++ L ++
Sbjct: 7 LLVLAVIIYGTAGFHFI--EGESWTVSLYWTFVTIATVGYGDY-------SPSTPLGMYF 57
Query: 159 NYIFLILGCSCI-YSLFNVTSIV 180
++LG ++ + +
Sbjct: 58 TVTLIVLGIGTFAVAVERLLEFL 80
Score = 34.7 bits (80), Expect = 0.002
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERI 53
VGYG +P T G F + LG + LE +
Sbjct: 42 VGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 39.6 bits (92), Expect = 7e-05
Identities = 9/83 (10%), Positives = 29/83 (34%)
Query: 92 VYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPN 151
+ + + ++ ++ + +F + +T+G+GD +
Sbjct: 32 LAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAI 91
Query: 152 SSLYSFWNYIFLILGCSCIYSLF 174
++L F + L +++ F
Sbjct: 92 ATLEIFVGMSGIALSTGLVFARF 114
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 38.4 bits (89), Expect = 2e-04
Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 91 SVYWVMLCLIVASIVIAGCASFVYVPYEN-------WTYLESIYFCFVSFSTIGFGDYVS 143
S + + +V + Y+ + ++ ++ +F + +TIG+G +
Sbjct: 23 SWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIP 82
Query: 144 AQAIDYPNSSLYSFWNYIFLILGCSCIYSLFN 175
+ +L + + L + S IY+ F
Sbjct: 83 IGPLANTLVTLEALCGMLGLAVAASLIYARFT 114
Score = 26.5 bits (58), Expect = 2.9
Identities = 11/47 (23%), Positives = 16/47 (34%)
Query: 7 FWVELNYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERI 53
F V+ +GYG P V + G G + +L R
Sbjct: 67 FSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 113
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
pernix [TaxId: 56636]}
Length = 132
Score = 36.1 bits (83), Expect = 0.002
Identities = 8/97 (8%), Positives = 22/97 (22%), Gaps = 4/97 (4%)
Query: 89 KPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAID 148
P V + + S+++ + + E L + V + +A
Sbjct: 5 HPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWA----DYAYRAYK 60
Query: 149 YPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFL 185
+ + Y + +
Sbjct: 61 SGDPAGYVKKTLYEIPALVPAGLLALIEGHLAGLGLF 97
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 33.8 bits (77), Expect = 0.006
Identities = 12/102 (11%), Positives = 38/102 (37%), Gaps = 16/102 (15%)
Query: 91 SVYW--VMLCLIVASIVIAGCASFVYV------PYENWTYLESIYFCFVSFSTIGFGDYV 142
+++W ++ IV+ + + + TY ++++ + +T+G+GD
Sbjct: 2 ALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL- 60
Query: 143 SAQAIDYPNSSLYSFWNYIFLILGCSCI-YSLFNVTSIVIKQ 183
YP + + ++ G + + + + +
Sbjct: 61 ------YPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGR 96
Score = 24.5 bits (53), Expect = 10.0
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLA 58
VGYG P T G+ +V GI F L + T
Sbjct: 55 VGYGDLYPVTLWGRCVAVVVMVA----GITSFGLVTAALATWFV 94
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Length = 509
Score = 29.4 bits (65), Expect = 0.78
Identities = 12/107 (11%), Positives = 36/107 (33%), Gaps = 6/107 (5%)
Query: 20 TAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQDLSED 79
A T +F + + + + + + I + + + + G D + +
Sbjct: 373 HAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIF--GADKAWE 430
Query: 80 ERNESLEEWKPSVYWVMLC----LIVASIVIAGCASFVYVPYENWTY 122
E N P +Y+ ++ +A +++ ++ E +
Sbjct: 431 EINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHW 477
>d1bu8a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 114
Score = 26.4 bits (58), Expect = 2.8
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 13 YKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLER 52
YKV + + G + V +YG G S F L+
Sbjct: 4 YKVSVTLSGAKKLSGYILVALYGNNGNSKQYEIFKGSLKP 43
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 25.5 bits (55), Expect = 4.8
Identities = 8/85 (9%), Positives = 25/85 (29%), Gaps = 4/85 (4%)
Query: 141 YVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDMFCCRKP 200
Y+ + L S + G + + + ++ + +
Sbjct: 22 YLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRM----RGQAFITFPNKEIAWQAL 77
Query: 201 PDKTGRVLRRHSIRVQRERERRRRS 225
G L + ++ + +++RS
Sbjct: 78 HLVNGYKLYGKILVIEFGKNKKQRS 102
>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase
{Enterobacter cloacae [TaxId: 550]}
Length = 196
Score = 26.0 bits (56), Expect = 5.5
Identities = 14/166 (8%), Positives = 42/166 (25%), Gaps = 24/166 (14%)
Query: 103 SIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFG---DYVSAQAIDYPNSSLY---- 155
I++A + + + + + + +IG+ + + A +
Sbjct: 22 DIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDG 81
Query: 156 --------SFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDMFCCRKPPDKTGRV 207
+ + T ++ ++ P
Sbjct: 82 AAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLD 141
Query: 208 LRRHSIRVQRERERRRRSSITLPKTIRRERNRPLGRICDV-VPQAD 252
+ RV + L + + + + +V +P+AD
Sbjct: 142 PQSECWRVSEAEQ--------LADVLEKVAHHERLSLIEVMLPKAD 179
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV
{Cow (Bos taurus) [TaxId: 9913]}
Length = 144
Score = 25.9 bits (57), Expect = 5.9
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 80 ERNESLEEWKPSVYWVMLCLIVASIVIAGCASFVY 114
E N S EWK V M + ++++ +VY
Sbjct: 67 EMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVY 101
>d1y0ka1 c.52.1.31 (A:1-209) Hypothetical protein PA4535
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 209
Score = 25.7 bits (56), Expect = 7.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 217 RERERRRRSSITLPKTIRRE 236
RE RRR +++L + IRRE
Sbjct: 84 REELTRRRQAVSLRQLIRRE 103
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 25.7 bits (55), Expect = 9.2
Identities = 14/145 (9%), Positives = 37/145 (25%), Gaps = 16/145 (11%)
Query: 68 KLLRSG--QDLSEDERNESLEEWKPSVYW-------------VMLCLIVASIVIAGCASF 112
++++ + +SE+E E L++ + S Y + + ++ + AG
Sbjct: 5 EMIKRNTSEIISEEELREVLKKDEKSAYIGFEPSGKIHLGHYLQIKKMID-LQNAGFDII 63
Query: 113 VYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYS 172
+ + + + + A + F L +
Sbjct: 64 ILLADLHAYLNQKGELDEIRKIGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLAL 123
Query: 173 LFNVTSIVIKQFLNWLIYEMDMFCC 197
+ L E
Sbjct: 124 KTTLKRARRSMELIAREDENPKVAE 148
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.425
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,413,915
Number of extensions: 67490
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 17
Length of query: 370
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 283
Effective length of database: 1,213,086
Effective search space: 343303338
Effective search space used: 343303338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.1 bits)