Query psy12958
Match_columns 294
No_of_seqs 149 out of 605
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 15:28:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3577|consensus 100.0 6.4E-59 1.4E-63 466.1 16.7 275 13-294 40-345 (556)
2 PF01534 Frizzled: Frizzled/Sm 100.0 1.6E-37 3.4E-42 293.8 14.9 125 166-294 1-129 (328)
3 cd07451 CRD_SMO Cysteine-rich 100.0 9.4E-35 2E-39 240.8 4.9 128 13-142 2-132 (132)
4 cd07454 CRD_LIN_17 Cysteine-ri 100.0 2.6E-32 5.6E-37 224.6 5.9 113 12-127 1-118 (124)
5 cd07466 CRD_FZ7 Cysteine-rich 100.0 1.3E-31 2.8E-36 220.7 6.0 105 13-120 2-110 (125)
6 cd07441 CRD_SFRP3 Cysteine-ric 100.0 1.7E-31 3.7E-36 219.8 5.8 109 15-126 3-118 (126)
7 cd07465 CRD_FZ1 Cysteine-rich 100.0 2.1E-31 4.6E-36 220.0 6.1 105 13-120 2-110 (127)
8 cd07464 CRD_FZ2 Cysteine-rich 100.0 2.8E-31 6E-36 219.1 6.1 105 13-120 2-110 (127)
9 cd07462 CRD_FZ10 Cysteine-rich 100.0 3.9E-31 8.4E-36 218.3 6.8 105 13-120 2-111 (127)
10 cd07449 CRD_FZ3 Cysteine-rich 100.0 2.2E-31 4.9E-36 219.3 5.1 104 14-120 3-110 (127)
11 cd07458 CRD_FZ1_like Cysteine- 100.0 3.6E-31 7.8E-36 216.5 6.1 104 14-120 1-108 (119)
12 cd07442 CRD_SFRP4 Cysteine-ric 100.0 3.3E-31 7.2E-36 218.4 5.8 104 14-120 3-112 (127)
13 cd07460 CRD_FZ5 Cysteine-rich 100.0 1.1E-30 2.5E-35 215.5 6.2 104 14-120 3-111 (127)
14 cd07450 CRD_FZ6 Cysteine-rich 100.0 1E-30 2.2E-35 215.6 5.5 104 14-120 3-110 (127)
15 cd07457 CRD_FZ9_like Cysteine- 100.0 1.3E-30 2.9E-35 213.8 5.9 104 14-120 1-109 (121)
16 cd07463 CRD_FZ9 Cysteine-rich 100.0 1.6E-30 3.5E-35 214.7 6.1 104 14-120 3-111 (127)
17 cd07456 CRD_FZ5_like Cysteine- 100.0 1.8E-30 3.8E-35 212.8 6.2 104 15-121 1-109 (120)
18 cd07461 CRD_FZ8 Cysteine-rich 100.0 1.4E-30 3.1E-35 214.6 5.6 104 14-120 3-111 (125)
19 cd07444 CRD_SFRP5 Cysteine-ric 100.0 2.4E-30 5.2E-35 213.5 5.8 111 12-126 3-118 (127)
20 cd07448 CRD_FZ4 Cysteine-rich 100.0 3.4E-30 7.4E-35 212.8 6.5 104 14-120 2-110 (126)
21 cd07447 CRD_Carboxypeptidase_Z 100.0 3.1E-30 6.8E-35 213.2 6.0 104 13-119 1-112 (128)
22 smart00063 FRI Frizzled. Droso 100.0 4.5E-30 9.8E-35 208.6 6.6 108 16-126 1-112 (113)
23 cd07446 CRD_SFRP2 Cysteine-ric 100.0 7.5E-30 1.6E-34 211.0 6.4 111 13-126 2-119 (128)
24 cd07443 CRD_SFRP1 Cysteine-ric 100.0 9.9E-30 2.1E-34 209.0 5.8 110 12-126 3-117 (124)
25 cd07888 CRD_corin_2 One of two 100.0 1.1E-29 2.5E-34 208.5 5.9 102 16-120 2-110 (122)
26 cd07445 CRD_corin_1 One of two 100.0 1.1E-29 2.3E-34 209.4 5.1 103 14-120 3-112 (130)
27 cd07453 CRD_crescent Cysteine- 100.0 1.9E-29 4.1E-34 209.9 5.9 107 17-127 6-115 (135)
28 cd07452 CRD_sizzled Cysteine-r 100.0 3.3E-29 7E-34 209.7 6.5 111 13-127 6-121 (141)
29 cd07455 CRD_Collagen_XVIII Cys 99.9 2.4E-28 5.2E-33 200.3 4.7 101 15-120 4-109 (123)
30 cd07066 CRD_FZ CRD_domain cyst 99.9 4.9E-23 1.1E-27 167.9 6.1 104 15-121 1-109 (119)
31 PF01392 Fz: Fz domain; Inter 99.8 5.6E-21 1.2E-25 153.8 3.4 102 16-120 1-108 (116)
32 PF05462 Dicty_CAR: Slime mold 98.4 1.7E-06 3.7E-11 81.7 11.3 105 169-290 2-106 (303)
33 cd07459 CRD_TK_ROR_like Cystei 97.8 1.2E-05 2.7E-10 67.3 2.5 102 14-120 1-121 (135)
34 cd07469 CRD_TK_ROR_related Cys 97.0 0.00039 8.4E-09 59.0 2.1 87 13-102 2-98 (147)
35 cd07467 CRD_TK_ROR1 Cysteine-r 97.0 0.00039 8.5E-09 58.6 1.9 101 13-120 2-123 (142)
36 cd07468 CRD_TK_ROR2 Cysteine-r 96.8 0.00079 1.7E-08 56.6 2.1 104 13-120 2-123 (140)
37 PF00002 7tm_2: 7 transmembran 96.6 0.0011 2.3E-08 59.6 1.9 100 175-288 2-101 (242)
38 KOG4193|consensus 96.1 0.032 6.9E-07 57.7 9.7 90 175-286 321-413 (610)
39 PF11710 Git3: G protein-coupl 93.7 0.38 8.3E-06 42.8 8.4 98 177-288 4-103 (201)
40 KOG4564|consensus 83.3 13 0.00028 37.6 10.8 99 177-281 148-251 (473)
41 PF02101 Ocular_alb: Ocular al 81.2 15 0.00032 36.2 10.1 76 212-291 69-148 (405)
42 PF12929 Mid1: Stretch-activat 65.9 3.2 6.8E-05 41.3 1.4 20 86-105 374-393 (427)
43 PF10856 DUF2678: Protein of u 47.1 6.8 0.00015 32.1 0.2 59 165-231 17-78 (118)
44 PHA03235 DNA packaging protein 39.5 3.8E+02 0.0082 26.3 12.5 100 174-287 33-133 (409)
45 PF03908 Sec20: Sec20; InterP 38.3 32 0.00069 26.5 2.7 22 210-231 68-89 (92)
46 PF06024 DUF912: Nucleopolyhed 38.2 22 0.00047 28.2 1.8 35 174-208 60-94 (101)
47 PF11694 DUF3290: Protein of u 35.9 1.7E+02 0.0037 24.9 7.0 52 174-227 13-64 (149)
48 PF10854 DUF2649: Protein of u 32.1 60 0.0013 23.6 3.0 20 268-287 37-56 (67)
49 PF10582 Connexin_CCC: Gap jun 29.8 1.8E+02 0.0039 21.4 5.4 28 169-196 38-65 (67)
50 PF07136 DUF1385: Protein of u 28.1 1.1E+02 0.0024 28.2 4.8 56 212-267 87-150 (236)
51 PF06703 SPC25: Microsomal sig 25.7 2E+02 0.0042 24.3 5.8 41 185-228 31-73 (162)
52 cd07912 Tweety_N N-terminal do 23.7 3.8E+02 0.0083 26.7 8.1 28 176-203 38-69 (418)
53 KOG4289|consensus 23.4 4.8E+02 0.01 30.8 9.2 31 257-287 2224-2254(2531)
54 PF05620 DUF788: Protein of un 23.4 4.7E+02 0.01 22.4 12.4 11 271-281 112-122 (170)
55 COG5454 Predicted secreted pro 23.1 74 0.0016 24.5 2.3 19 265-283 3-21 (89)
56 PF11395 DUF2873: Protein of u 22.5 1.5E+02 0.0032 19.5 3.3 23 257-279 10-32 (43)
57 PF01284 MARVEL: Membrane-asso 22.3 4E+02 0.0086 21.0 10.6 24 177-200 42-65 (144)
No 1
>KOG3577|consensus
Probab=100.00 E-value=6.4e-59 Score=466.12 Aligned_cols=275 Identities=22% Similarity=0.453 Sum_probs=237.1
Q ss_pred eeeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC--CCCCCCCH
Q psy12958 13 KVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED--NVVSVPSQ 90 (294)
Q Consensus 13 ~~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~--~~~i~PCr 90 (294)
+-.|+||+|+| |+||+||.|.+|| ++||+||+||+.++++|.||++. +||+++++||||+|+|+|++ +++++|||
T Consensus 40 ~~~c~pi~i~~-C~~i~Yn~T~~PN-ll~H~tQ~ea~~~~~~f~PLv~~-~Cs~~l~~FLCS~y~P~C~~~~d~pi~PCR 116 (556)
T KOG3577|consen 40 KARCEPITIPM-CQGLGYNMTAMPN-LVGHETQEEAGLKLHQFHPLVAL-RCSPGLRFFLCSLYAPMCTEDLDRPILPCR 116 (556)
T ss_pred cccccceeccc-cCCCCCCcccCCc-cccchhHHHhhhcccccCCcccc-ccchhhhhHhhcCCCCcCccccCcccCccH
Confidence 34799999999 6999999999999 78999999999999999999999 99999999999999999985 89999999
Q ss_pred HHHhhhcCCcccccc---ccCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCC-----------ccccc------
Q psy12958 91 EVCKLLSGPCRIVAQ---ELSPEFNCQNGTKISS---HSCKNEGRDLKFNSTGQCKPP-----------LVSTE------ 147 (294)
Q Consensus 91 ~lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~p---~~c~~~~~~~~~n~~~~Cp~p-----------Lv~~~------ 147 (294)
++||++|++|+++|+ +.||+.|+|++||... +.|+++++....+..+.++.+ +...+
T Consensus 117 slCe~ar~~Ce~~m~~~gf~WPe~L~C~~fp~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 196 (556)
T KOG3577|consen 117 SLCEAAREGCEPLMEMFGFPWPEFLRCDKFPVPDSAGELCMGPPSEGFAISAGSAGVSVLPDFGGPGVVLAKPWSDELCQ 196 (556)
T ss_pred HHHHHHhcccHHHHHhcCCCCCccccCCCCCCCCCccccccCCccccccCCCCCCCCCCCCCCCCCccccCCCCcccccc
Confidence 999999999999994 8999999999999875 578765443322211111110 01111
Q ss_pred ccccc----cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCCcchHHHHHHHHHH
Q psy12958 148 VVASF----YPGVEGCGLQCSDPLYSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFN 223 (294)
Q Consensus 148 ~~~~y----~~~~~~C~~pC~~~~ft~~e~~~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~Per~Iifls~c~~~ 223 (294)
++..| +.+.++|++||++++|+++|+++++.|+++|+.+|+.+|+|+++||++|..| ||| |||||+|+++||++
T Consensus 197 ~~~~~~~~~~~~~~~C~~~C~~~~f~~~e~~~~~~~i~~~s~~c~~~tlft~ltf~~d~~r-fry-per~i~~l~~c~~~ 274 (556)
T KOG3577|consen 197 NPSNFVGKESSEISNCAPPCPNPLFSRDENRFARSWIGIWSALCFLSTLFTVLTFLIDRMR-FRY-PERPIFFLSACYLI 274 (556)
T ss_pred CccccccccccCcccCCCCCCCcccchhhhhhHHHHhhhhhhccchhhHhHHHhhccchhh-ccC-CCcchhhHHHhhhh
Confidence 22222 2345799999999999999999999999999999999999999999999777 999 99999999999999
Q ss_pred HHHHHHHHhcCCCCCCceeecC-CCceeecCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q psy12958 224 TCIGWLLQFTPGIDKEDIVCQR-DGTLRVPGPRF-DLCTVTFVIIYWSVISGLVWFIILTYILHITLQEKTGE 294 (294)
Q Consensus 224 ~Sl~~li~~~~g~~~~~i~C~~-~~~~~~~~~~d-~~C~~~f~l~yff~maa~lWWvil~~~Wflaa~~kw~~ 294 (294)
++++|++++..| +++++|+. +.+....++++ ..|+++|+++|||+||+.+||++++++||+++++||++
T Consensus 275 ~s~~~~~~~~~g--~~~~~c~~~~~~~~~~~~~~~~~C~~vf~l~y~f~~a~~~wwv~l~l~w~l~~~~kw~~ 345 (556)
T KOG3577|consen 275 VSVGYLSSFVLG--SDEIACRATPARLLVQTGLENSGCTLVFLLLYFFLMAGSVWWVILTLTWFLAAGLKWGE 345 (556)
T ss_pred hccceeecccCC--CceeccCCCCCCceeecCCCCCCceeeehhHHHHHHHHHHHHHHHHHHHHhhhcCcccc
Confidence 999999999999 69999995 44444555666 89999999999999999999999999999999999986
No 2
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=100.00 E-value=1.6e-37 Score=293.82 Aligned_cols=125 Identities=30% Similarity=0.637 Sum_probs=117.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCceeecC
Q psy12958 166 PLYSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQR 245 (294)
Q Consensus 166 ~~ft~~e~~~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~Per~Iifls~c~~~~Sl~~li~~~~g~~~~~i~C~~ 245 (294)
|+||++||++++.|+++||++|+++|+|+++||++|++| ||| |||||+|+++||+++|+||++|++.| ||+++|++
T Consensus 1 p~ft~~e~~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~r-f~y-Perpi~fl~~Cy~~~s~~~l~~~~~g--~~~i~C~~ 76 (328)
T PF01534_consen 1 PFFTQEEKEFARIWIGVWSVICFISTLFTVLTFLIDRSR-FRY-PERPIIFLSFCYFIVSLGYLIRFILG--RESIACRS 76 (328)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cCC-ccchhhHHHHHHHHHHHHHHHHHhcc--CCCcCCCc
Confidence 799999999999999999999999999999999999997 999 99999999999999999999999999 99999997
Q ss_pred -CCcee--ecCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q psy12958 246 -DGTLR--VPGPRF-DLCTVTFVIIYWSVISGLVWFIILTYILHITLQEKTGE 294 (294)
Q Consensus 246 -~~~~~--~~~~~d-~~C~~~f~l~yff~maa~lWWvil~~~Wflaa~~kw~~ 294 (294)
++..+ .+++.+ ..|+++|+++|||+|||.+|||||+++|||++++||||
T Consensus 77 ~~~~~~~~~~~~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~ 129 (328)
T PF01534_consen 77 QDGTERILVQDGLENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGS 129 (328)
T ss_pred CCCCceeEeecCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCc
Confidence 54432 355555 89999999999999999999999999999999999995
No 3
>cd07451 CRD_SMO Cysteine-rich domain of the smoothened receptor (Smo) integral membrane protein. The cysteine-rich domain (CRD) is part of the smoothened receptor (Smo), an integral membrane protein and one of the key players in the Hedgehog (Hh) signaling pathway, critical for development, cell growth and migration, as well as stem cell maintenance. The CRD of Smo is conserved in vertebrates and can also be identified in invertebrates. The precise function of the CRD in Smo is unknown. Mutations in the Drosophila CRD disrupt Smo activity in vivo, while deletion of the CRD in mammalian cells does not seem to affect the activity of overexpressed Smo.
Probab=100.00 E-value=9.4e-35 Score=240.79 Aligned_cols=128 Identities=38% Similarity=0.786 Sum_probs=120.0
Q ss_pred eeeeeeeEecccccc--ccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCCCCCCCCCH
Q psy12958 13 KVFFAPVNVELSAKD--IVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQ 90 (294)
Q Consensus 13 ~~~~~~~~~~~~~~~--i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~~~~i~PCr 90 (294)
+..|.||.+++ |+| |+||.|.+||. +||+||+||+.+++.|.+|+++++||+++|+||||+|+|+|+++++++|||
T Consensus 2 ~~~Cepi~~~~-C~g~~lpYn~T~~PN~-~~h~tq~ea~~~l~~f~pLv~vp~C~~~l~~FLCSly~P~C~~~~~~~PCR 79 (132)
T cd07451 2 PAKCEPLKNTT-CLGSKLPYTYTSLDLV-PDSTTQEEVQEKLHLWSGLRNVPKCWAVIQPLLCALYMPKCENGKVELPSQ 79 (132)
T ss_pred CceeeECCccc-cCCCCCCccceecCCc-cCCcCHHHHHHHHHHHHHHHhhcccchhheeeeEeeECCcCCCCCccCCCH
Confidence 46899999999 566 99999999885 799999999999999999999889999999999999999999888999999
Q ss_pred HHHhhhcCCcccccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy12958 91 EVCKLLSGPCRIVAQ-ELSPEFNCQNGTKISSHSCKNEGRDLKFNSTGQCKPP 142 (294)
Q Consensus 91 ~lCe~v~~~C~~~~~-~~WP~~l~C~~~P~~p~~c~~~~~~~~~n~~~~Cp~p 142 (294)
++|+++|++|+++|. +.||++|+|+++|.|++.|.|+.+++++|.+|+|.+|
T Consensus 80 slCe~vr~~C~~~m~~~~WP~~L~C~~~p~~~~~C~~~~~~~~~n~~~~c~~p 132 (132)
T cd07451 80 EMCQATRGPCKIVENERGWPDFLRCDNDRFPPRGCKNDVRELKFNTSGQCESP 132 (132)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcCcCCCCCCccccCCCHHHHhhccCCCCccCc
Confidence 999999999999995 8999999999999999999999999999999999776
No 4
>cd07454 CRD_LIN_17 Cysteine-rich domain (CRD) of LIN_17. A cysteine-rich domain (CRD) is an essential component of a number of cell surface receptors, which are involved in multiple signal transduction pathways, particularly in modulating the activity of the Wnt proteins, which play a fundamental role in the early development of metazoans. CRD is also found in secreted frizzled related proteins (SFRPs), which lack the transmembrane segment found in the frizzled protein. The CRD domain is also present in the alpha-1 chain of mouse type XVIII collagen, in carboxypeptidase Z, several receptor tyrosine kinases, and the mosaic transmembrane serine protease corin. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. CRD domains have also been identified in multiple tandem copies in a Dictyostelium discoideum protein. Very little is known about the mechanism by which CRD domains interact with the
Probab=99.97 E-value=2.6e-32 Score=224.64 Aligned_cols=113 Identities=19% Similarity=0.273 Sum_probs=104.3
Q ss_pred eeeeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC--CCCCCCC
Q psy12958 12 TKVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED--NVVSVPS 89 (294)
Q Consensus 12 ~~~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~--~~~i~PC 89 (294)
+|+.|+||.++| |+||+||.|.+|| ++||++|+||+.+++.|.+|++. +||+++++||||+|+|+|++ .++++||
T Consensus 1 ~~~~C~Pi~~~~-C~~l~Yn~T~~PN-~lgh~~q~ea~~~~~~f~pLv~~-~C~p~l~~FlCsl~~P~C~~~~~~~i~PC 77 (124)
T cd07454 1 VKGKCIPIDIEL-CKDLPYNYTYFPN-TILHNDQHTLQTHTEHFKPLMKT-KCHPHIHFFICSVFAPMCPIGMPQAVTSC 77 (124)
T ss_pred CCCccccCChhh-hCCCCcCcccCCc-ccCCCCHHHHHHHHHHHHHHHhc-CCChhHHHHhhcccccccCCCCCCcCCCC
Confidence 478999999999 5999999998888 57999999999999999999998 99999999999999999986 4689999
Q ss_pred HHHHhhhcCCcccccc---ccCCCCCCCCCCCCCCCCCCCC
Q psy12958 90 QEVCKLLSGPCRIVAQ---ELSPEFNCQNGTKISSHSCKNE 127 (294)
Q Consensus 90 r~lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~p~~c~~~ 127 (294)
|++||+||++|+++|. +.||+.|+|++||..+++|+++
T Consensus 78 RslCe~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~~C~~p 118 (124)
T cd07454 78 KSVCEQVKADCFSILEEFGIGWPEPLNCAQFPDPPELCMKP 118 (124)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCCChhhCCCCCCCCCCc
Confidence 9999999999999984 7999999999999877777754
No 5
>cd07466 CRD_FZ7 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 7 (Fz7) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 7 (Fz7) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz7 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=99.97 E-value=1.3e-31 Score=220.68 Aligned_cols=105 Identities=18% Similarity=0.329 Sum_probs=98.6
Q ss_pred eeeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC-CCCCCCCHH
Q psy12958 13 KVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED-NVVSVPSQE 91 (294)
Q Consensus 13 ~~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~-~~~i~PCr~ 91 (294)
+++|+||.+++ |+||+||.|.+||. +||++|+||+.+++.|.+|++. +||+++++||||+|+|+|.. +++++|||+
T Consensus 2 ~~~CepI~~~~-C~~l~Yn~T~~PN~-lgH~~q~ea~~~~~~f~pLv~~-~Csp~l~~FlCsl~~P~C~~~~~~i~PCRs 78 (125)
T cd07466 2 HGFCQPISIPL-CTDIAYNQTIMPNL-LGHTNQEDAGLEVHQFYPLVKV-QCSPELKFFLCSMYAPVCTVLEQAIPPCRS 78 (125)
T ss_pred CCccccCCHHH-hCCCCCCcccCCcc-cCCCCHHHHHHHHHHHHHHHhC-CCChhHHHHhhhccCCccCCCCCcCCCcHH
Confidence 57899999999 59999999988885 7999999999999999999998 99999999999999999986 679999999
Q ss_pred HHhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958 92 VCKLLSGPCRIVAQ---ELSPEFNCQNGTKIS 120 (294)
Q Consensus 92 lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~ 120 (294)
+||+||++|+++|+ +.||+.|+|++||..
T Consensus 79 lCe~vr~~C~~~m~~fg~~WP~~l~C~~fP~~ 110 (125)
T cd07466 79 LCERARQGCEALMNKFGFQWPERLRCENFPVH 110 (125)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCCcccCCCC
Confidence 99999999999994 899999999998865
No 6
>cd07441 CRD_SFRP3 Cysteine-rich domain of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), which plays important roles in embryogenesis and postnatal development as an antagonist of Wnt proteins, key players in a number of fundamental cellular processes. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled proteins (Fz), thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP3 regulates Wnt signaling activity in bone development and homeostasis. It is also involved in the control of planar cell polarity.
Probab=99.97 E-value=1.7e-31 Score=219.84 Aligned_cols=109 Identities=21% Similarity=0.325 Sum_probs=98.8
Q ss_pred eeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC---CCCCCCCHH
Q psy12958 15 FFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED---NVVSVPSQE 91 (294)
Q Consensus 15 ~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~---~~~i~PCr~ 91 (294)
+|+||.|+| |+||+||.|.|||. +||+||+||..+++.|.+|++. +||+++++||||+|+|+|++ +++++|||+
T Consensus 3 ~CepI~~~~-C~~l~Yn~T~~PN~-lgH~~q~ea~~~~~~f~pLv~~-~Csp~l~~FLCS~~~P~C~~~~~~~~i~PCRs 79 (126)
T cd07441 3 SCEPVRIPM-CKSMPWNMTKMPNH-LHHSTQANAVLAIEQFEGLLGT-QCSPDLLFFLCAMYAPICTIDFQHEPIKPCKS 79 (126)
T ss_pred cccccChhh-hCCCCcCcccCCcc-cCCCCHHHHHHHHHHHHHHhcC-CCCccchhHHhhccCcccCCCCCCCcCCccHH
Confidence 689999999 59999999988885 7999999999999999999999 99999999999999999986 478999999
Q ss_pred HHhhhcCCcccccc---ccCCCCCCCCCCCCCC-CCCCC
Q psy12958 92 VCKLLSGPCRIVAQ---ELSPEFNCQNGTKISS-HSCKN 126 (294)
Q Consensus 92 lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~p-~~c~~ 126 (294)
+||+||++|+++|. +.||+.|+|++||... ..|+.
T Consensus 80 lCe~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~~~~Ci~ 118 (126)
T cd07441 80 VCERARAGCEPVLIRYRHTWPESLACEELPVYDRGVCIS 118 (126)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCCcccCCCCCCCcCcC
Confidence 99999999999994 7999999999988642 24543
No 7
>cd07465 CRD_FZ1 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 1 (Fz1) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata.
Probab=99.97 E-value=2.1e-31 Score=219.98 Aligned_cols=105 Identities=17% Similarity=0.324 Sum_probs=98.7
Q ss_pred eeeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC-CCCCCCCHH
Q psy12958 13 KVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED-NVVSVPSQE 91 (294)
Q Consensus 13 ~~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~-~~~i~PCr~ 91 (294)
++.|+||.++| |+|++||.|.+||. +||++|+||+.+++.|.+|++. +||+++++||||+|+|+|+. +++++|||+
T Consensus 2 ~~~Cepi~~~~-C~~l~Yn~T~~PN~-lgh~~q~ea~~~~~~f~pLv~~-~Csp~l~~FLCSl~~P~C~~~~~~i~PCRs 78 (127)
T cd07465 2 HGYCQPISIPL-CTDIAYNQTIMPNL-LGHTNQEDAGLEVHQFYPLVKV-QCSAELKFFLCSMYAPVCTVLEQALPPCRS 78 (127)
T ss_pred CCeeeeCCHHH-hCCCCCCcccCCcc-cCCCCHHHHHHHHHHHHHHHhC-CCChhhHhHhhhccCCcccCCCCcCCccHH
Confidence 57899999999 59999999988885 7999999999999999999998 99999999999999999986 689999999
Q ss_pred HHhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958 92 VCKLLSGPCRIVAQ---ELSPEFNCQNGTKIS 120 (294)
Q Consensus 92 lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~ 120 (294)
+||+||++|+++|+ +.||+.|+|++||..
T Consensus 79 lCe~vr~~C~~~m~~fg~~WP~~l~C~~fP~~ 110 (127)
T cd07465 79 LCERARQGCEALMNKFGFQWPDTLRCEKFPVH 110 (127)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCCcccCCCC
Confidence 99999999999984 899999999998864
No 8
>cd07464 CRD_FZ2 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 2 (Fz2) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 2 (Fz2) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz2 is involved in the Wnt/beta-catenin signaling pathway and in the activation of protein kinase C and calcium/calmodulin-dependent protein kinase (CaM kinase).
Probab=99.97 E-value=2.8e-31 Score=219.15 Aligned_cols=105 Identities=18% Similarity=0.311 Sum_probs=98.7
Q ss_pred eeeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC-CCCCCCCHH
Q psy12958 13 KVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED-NVVSVPSQE 91 (294)
Q Consensus 13 ~~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~-~~~i~PCr~ 91 (294)
+++|+||.+++ |+|++||.|.+||. +||++|+||+.+++.|.+|++. +||+++++||||+|+|+|+. +++++|||+
T Consensus 2 ~~~CepI~~~~-C~~l~Yn~T~~PN~-lgH~sq~ea~~~~~~f~pLv~~-~Csp~l~~FlCSl~~P~C~~~~~~i~PCRs 78 (127)
T cd07464 2 HGFCQPISIPL-CTDIAYNQTIMPNL-LGHTNQEDAGLEVHQFYPLVKV-QCSLELRFFLCSMYAPVCTVLEQAIPPCRS 78 (127)
T ss_pred CCccccCChhh-hCCCCCCcccCCcc-cCCCCHHHHHHHHHHHHHHHhc-CCChhHHHHHhhccCCccCCCCCcCCCcHH
Confidence 57899999999 59999999988885 7999999999999999999999 99999999999999999986 679999999
Q ss_pred HHhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958 92 VCKLLSGPCRIVAQ---ELSPEFNCQNGTKIS 120 (294)
Q Consensus 92 lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~ 120 (294)
+||+||++|+++|+ +.||+.|+|++||..
T Consensus 79 lCe~vr~~C~~~m~~fg~~WP~~l~C~~fP~~ 110 (127)
T cd07464 79 ICERARQGCEALMNKFGFQWPERLRCENFPRH 110 (127)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCCcccCCCC
Confidence 99999999999994 899999999998775
No 9
>cd07462 CRD_FZ10 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 10 (Fz10) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 10 (Fz10) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. The cellular functon of Fz10 is unknown.
Probab=99.97 E-value=3.9e-31 Score=218.30 Aligned_cols=105 Identities=17% Similarity=0.271 Sum_probs=97.8
Q ss_pred eeeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC--CCCCCCCH
Q psy12958 13 KVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED--NVVSVPSQ 90 (294)
Q Consensus 13 ~~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~--~~~i~PCr 90 (294)
++.|+||.+++ |+||+||.|.+||. +||++|+||+.+++.|.+|++. +||+++++||||+|+|+|+. +++++|||
T Consensus 2 ~~~C~pI~~~~-C~~l~Yn~T~~PN~-lgH~~q~ea~~~~~~f~pLv~~-~C~p~l~~FlCsl~~P~C~~~~~~~i~PCR 78 (127)
T cd07462 2 EGRCQPIEIPM-CKDIGYNMTRMPNL-MGHENQREAAIQLHEFAPLVEY-GCHSHLKFFLCSLYAPMCTEQVSTPIPACR 78 (127)
T ss_pred CCeeeecChhh-hCCCCcCceeCCcc-cCCcCHHHHHHHHHHHHHHhcc-CCChhhHHHHHhccccccCCCCCCcCCccH
Confidence 47899999999 59999999988885 7999999999999999999998 99999999999999999986 47899999
Q ss_pred HHHhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958 91 EVCKLLSGPCRIVAQ---ELSPEFNCQNGTKIS 120 (294)
Q Consensus 91 ~lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~ 120 (294)
++||+||++|+++|+ +.||+.|+|++||..
T Consensus 79 slCe~vr~~C~~~m~~~g~~WP~~l~C~~fP~~ 111 (127)
T cd07462 79 VMCEQARLKCSPIMEQFNFKWPDSLDCSKLPNK 111 (127)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcCCcccCCCC
Confidence 999999999999984 799999999998765
No 10
>cd07449 CRD_FZ3 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 3 (Fz3) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 3 (Fz3) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz3 plays a vital role in the anterior-posterior guidance of commissural axons. Knockout mice without Fz3 show defects in fiber tracts in the rostral CNS.
Probab=99.97 E-value=2.2e-31 Score=219.27 Aligned_cols=104 Identities=17% Similarity=0.324 Sum_probs=97.0
Q ss_pred eeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC-CCCCCCCHHH
Q psy12958 14 VFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED-NVVSVPSQEV 92 (294)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~-~~~i~PCr~l 92 (294)
..|+||++++ |+||+||.|.+||. +||++|+||+.+++.|.+|++. +||+++++||||+|+|+|++ +++++|||++
T Consensus 3 ~~CepI~~~~-C~~l~Yn~T~~PN~-lgH~~q~ea~~~~~~f~pLv~~-~Csp~l~~FLCSly~P~C~~~~~~i~PCRsl 79 (127)
T cd07449 3 FSCEPITLRM-CQDLPYNTTFMPNL-LNHYDQQTAALAMEPFHPMVNL-ECSRDFRPFLCALYAPVCMEYGRVTLPCRRL 79 (127)
T ss_pred ceeeeCChhh-hCCCCCCcccCCcc-cCCcCHHHHHHHHHhhcccccC-CcChhhHhHhheeeccccCCCCCCCCCCHHH
Confidence 3699999999 59999999988885 7999999999999999999999 99999999999999999986 6789999999
Q ss_pred HhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958 93 CKLLSGPCRIVAQ---ELSPEFNCQNGTKIS 120 (294)
Q Consensus 93 Ce~v~~~C~~~~~---~~WP~~l~C~~~P~~ 120 (294)
||+||++|+++|+ +.||+.|+|++||+.
T Consensus 80 Ce~vr~~C~~~m~~fg~~WP~~L~C~~fP~~ 110 (127)
T cd07449 80 CQRAYSECSKLMEMFGVPWPEDMECSRFPDC 110 (127)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCcccCCCC
Confidence 9999999999994 799999999998754
No 11
>cd07458 CRD_FZ1_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 1. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1), frizzled 2 (Fz2), and frizzled 7 (Fz7) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=99.97 E-value=3.6e-31 Score=216.50 Aligned_cols=104 Identities=17% Similarity=0.287 Sum_probs=97.6
Q ss_pred eeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC-CCCCCCCHHH
Q psy12958 14 VFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED-NVVSVPSQEV 92 (294)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~-~~~i~PCr~l 92 (294)
+.|+||.+++ |+|++||.|.+||. +||++|+||+.+++.|.+|++. +||+++++||||+|+|+|+. +++++|||++
T Consensus 1 ~~C~pi~~~~-C~~l~Yn~T~~PN~-lgh~~q~ea~~~l~~~~pLv~~-~C~p~l~~FlCsl~~P~C~~~~~~i~PCRsl 77 (119)
T cd07458 1 GKCEPITIPL-CTDIPYNMTIFPNL-LGHTKQEDAGLEVHQFYPLVKV-QCSPDLKFFLCSVYAPVCTVLERPIPPCRSL 77 (119)
T ss_pred CccccCChHH-hCCCCCCccCCCCc-cCCCCHHHHHHHHHHHHHHHhC-CCChhHHHHhhhccccccCCCCCcCCccHHH
Confidence 4699999999 59999999998885 7999999999999999999998 99999999999999999986 6899999999
Q ss_pred HhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958 93 CKLLSGPCRIVAQ---ELSPEFNCQNGTKIS 120 (294)
Q Consensus 93 Ce~v~~~C~~~~~---~~WP~~l~C~~~P~~ 120 (294)
||+||++|+++|+ +.||+.|+|++||..
T Consensus 78 Ce~vr~~C~~~m~~~g~~WP~~l~C~~fP~~ 108 (119)
T cd07458 78 CESARQGCEALMNKFGFQWPESLDCEKFPVH 108 (119)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcccCCCC
Confidence 9999999999985 799999999998765
No 12
>cd07442 CRD_SFRP4 Cysteine-rich domain of the secreted frizzled-related protein 4 (SFRP4), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 4 (SFRP4), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=99.97 E-value=3.3e-31 Score=218.41 Aligned_cols=104 Identities=17% Similarity=0.296 Sum_probs=96.9
Q ss_pred eeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC---CCCCCCCH
Q psy12958 14 VFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED---NVVSVPSQ 90 (294)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~---~~~i~PCr 90 (294)
-.|+||.|+| |+||+||.|.|||. +||++|+||+.+++.|.+|++. +||+++++||||+|+|+|++ +++++|||
T Consensus 3 a~CepI~i~~-C~~l~Yn~T~~PN~-lgH~~q~ea~~~~~~f~pLv~~-~Csp~l~~FLCS~~~P~C~~~~~~~~i~PCR 79 (127)
T cd07442 3 APCEAVRIPM-CRHMPWNITRMPNH-LHHSTQENAVLAIEQYEELVDT-GCSPVLPFFLCAMYAPICTLEFLYDPIKPCR 79 (127)
T ss_pred CcccccChhh-hCCCCcCcccCcCc-cCCCCHHHHHHHHHHHHHHHcC-CCCcchHHHHHhhcCCccCCCCCCCcCCccH
Confidence 4799999999 59999999988885 7999999999999999999999 99999999999999999985 36899999
Q ss_pred HHHhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958 91 EVCKLLSGPCRIVAQ---ELSPEFNCQNGTKIS 120 (294)
Q Consensus 91 ~lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~ 120 (294)
++||+||++|+++|+ +.||+.|+|++||..
T Consensus 80 slCe~vr~~C~~~m~~fg~~WP~~L~C~~fP~~ 112 (127)
T cd07442 80 SVCQRARDGCEPIMRRYNHSWPESLACDDLPVY 112 (127)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcCCcccCCCC
Confidence 999999999999994 789999999998864
No 13
>cd07460 CRD_FZ5 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 5 (Fz5) receptor.proteins. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz5 plays critical regulating roles in the yolk sac and placental angiogenesis, in the maturation of the Paneth cell phenotype, in governing the neural potential of progenitors in the developing retina, and in neuronal s
Probab=99.96 E-value=1.1e-30 Score=215.48 Aligned_cols=104 Identities=20% Similarity=0.290 Sum_probs=96.7
Q ss_pred eeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC--CCCCCCCHH
Q psy12958 14 VFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED--NVVSVPSQE 91 (294)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~--~~~i~PCr~ 91 (294)
..|+||.++| |+||+||.|.+||. +||++|+||+.+++.|.+|++. +||+++++||||+|+|+|.+ +++++|||+
T Consensus 3 ~~CepI~~~~-C~~l~Yn~T~~PN~-lgh~~q~ea~~~~~~f~pLv~~-~Csp~l~~FlCS~~~P~C~~~~~~~i~PCRs 79 (127)
T cd07460 3 LVCQEITVPM-CKGIGYNLTYMPNQ-FNHDTQDEAGLEVHQFWPLVEI-QCSPDLRFFLCSMYTPICLPDYRKPLPPCRS 79 (127)
T ss_pred CEecccChhh-hCCCCCCcccCCCc-cCCCCHHHHHHHHHHHHHHHhC-CCChhHHHHhhhccCccccCCCCCcCCccHH
Confidence 3699999999 59999999988885 7999999999999999999999 99999999999999999975 468999999
Q ss_pred HHhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958 92 VCKLLSGPCRIVAQ---ELSPEFNCQNGTKIS 120 (294)
Q Consensus 92 lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~ 120 (294)
+||++|++|+++|+ +.||+.|+|++||..
T Consensus 80 lCe~vr~~C~~~m~~fg~~WP~~l~C~~fP~~ 111 (127)
T cd07460 80 VCERAKAGCSPLMRQYGFAWPERMNCDRLPVL 111 (127)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCChhhCCCC
Confidence 99999999999994 899999999998765
No 14
>cd07450 CRD_FZ6 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 6 (Fz6) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 6 (Fz6) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Frizzled 6 (Fz6) is expressed in the skin and hair follicles and controls hair patterning in mammals using a Fz-dependent tissue polarity system, which is similar to the one that patterns the Drosophila cuticle.
Probab=99.96 E-value=1e-30 Score=215.55 Aligned_cols=104 Identities=17% Similarity=0.344 Sum_probs=96.7
Q ss_pred eeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC-CCCCCCCHHH
Q psy12958 14 VFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED-NVVSVPSQEV 92 (294)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~-~~~i~PCr~l 92 (294)
+.|+||.+++ |+||+||.|.|||. +||++|+||+.+++.|.+|++. +||+++++||||+|+|+|.+ .++++|||++
T Consensus 3 ~~CepI~~~~-C~~l~YN~T~~PN~-lgH~~q~ea~~~~~~f~pLv~~-~Csp~l~~FLCS~~~P~C~~~~~~i~PCRsl 79 (127)
T cd07450 3 FTCEPITVPR-CLKMPYNMTFFPNL-MGHYDQDIAAVEMEPFLPLANL-RCSPNVHTFLCQAFVPTCTEQIHVVRPCREL 79 (127)
T ss_pred ceeeeCChhh-cCCCCCCcccCCcc-cCCcCHHHHHHHHHHHHhHhcc-CCChhhhhheeeeecccccCCCCcCCCCHHH
Confidence 5799999999 59999999988885 7999999999999999999999 99999999999999999987 4688999999
Q ss_pred HhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958 93 CKLLSGPCRIVAQ---ELSPEFNCQNGTKIS 120 (294)
Q Consensus 93 Ce~v~~~C~~~~~---~~WP~~l~C~~~P~~ 120 (294)
||+||++|+++|. +.||+.|+|++||..
T Consensus 80 Ce~vr~~C~~~m~~fg~~WP~~L~C~~fP~~ 110 (127)
T cd07450 80 CEKVYSDCKKLIDTFGISWPEELECDRLQYC 110 (127)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCcccCCCC
Confidence 9999999999984 899999999998754
No 15
>cd07457 CRD_FZ9_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 9. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) and frizzled 10 (Fz10) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=99.96 E-value=1.3e-30 Score=213.85 Aligned_cols=104 Identities=13% Similarity=0.233 Sum_probs=96.8
Q ss_pred eeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC--CCCCCCCHH
Q psy12958 14 VFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED--NVVSVPSQE 91 (294)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~--~~~i~PCr~ 91 (294)
++|+||.+++ |+|++||.|.+|| ++||++|+||+.+++.|.+|++. +||+++++||||+|+|+|++ +++++|||+
T Consensus 1 ~~CepI~~~~-C~~l~Yn~T~~PN-~lgh~~q~ea~~~~~~~~pLv~~-~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRs 77 (121)
T cd07457 1 GKCERITIPM-CQGIGYNMTRMPN-LLGHESQSEAAISIHEFAPLVQY-GCAEHLRFFLCSLYAPMCTEQVSIPIPACRS 77 (121)
T ss_pred CcCccCChHh-hCCCCCCceeCCC-cCCCcCHHHHHHHHHHHHHHHhc-CCChhHHHHhhhccCcccCCCCCCcCCccHH
Confidence 4799999999 5999999998888 58999999999999999999998 99999999999999999986 468999999
Q ss_pred HHhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958 92 VCKLLSGPCRIVAQ---ELSPEFNCQNGTKIS 120 (294)
Q Consensus 92 lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~ 120 (294)
+||+||++|+++|+ +.||+.|+|++||..
T Consensus 78 lCe~vr~~C~~~m~~~g~~WP~~l~C~~fP~~ 109 (121)
T cd07457 78 MCEQARDKCSPIMEQFSFSWPDSLDCDRLPRK 109 (121)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCCcccCCCC
Confidence 99999999999984 799999999998764
No 16
>cd07463 CRD_FZ9 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 9 (Fz9) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz9 may play a signaling role in lymphoid development and maturation, particularly at points where B cells undergo self-renewal prior to further differentiation.
Probab=99.96 E-value=1.6e-30 Score=214.70 Aligned_cols=104 Identities=19% Similarity=0.270 Sum_probs=96.7
Q ss_pred eeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC--CCCCCCCHH
Q psy12958 14 VFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED--NVVSVPSQE 91 (294)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~--~~~i~PCr~ 91 (294)
..|+||.++| |+||+||.|.+|| ++||+||+||..+++.|.+|++. +||+++++||||+|+|+|++ +++++|||+
T Consensus 3 ~~CepI~~~~-C~~l~Yn~T~~PN-~lgh~sq~ea~~~~~~f~pLv~~-~Csp~l~~FlCS~~~P~C~~~~~~~i~PCRs 79 (127)
T cd07463 3 AKCQPVVIPM-CRGIGYNLTRMPN-FLGHDSQREAAIKLNEFAPLVEY-GCHVHLRFFLCSLYAPMCTDQVSTSIPACRP 79 (127)
T ss_pred CccccCChhh-hCCCCcCcccCCc-ccCCcCHHHHHHHHHHHHHHHhc-CCChhhHHHhhhccccccCCCCCCcCCccHH
Confidence 4699999999 5999999998888 58999999999999999999998 99999999999999999986 368999999
Q ss_pred HHhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958 92 VCKLLSGPCRIVAQ---ELSPEFNCQNGTKIS 120 (294)
Q Consensus 92 lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~ 120 (294)
+||+||++|+++|+ +.||+.|+|++||..
T Consensus 80 lCe~vr~~C~~~m~~fg~~WP~~l~C~~fP~~ 111 (127)
T cd07463 80 MCEQARQKCSPIMEQFNFGWPESLDCSRLPTR 111 (127)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCChhhCCCC
Confidence 99999999999984 899999999998764
No 17
>cd07456 CRD_FZ5_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 5. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) and frizzled 8 (Fz8) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=99.96 E-value=1.8e-30 Score=212.81 Aligned_cols=104 Identities=17% Similarity=0.282 Sum_probs=96.8
Q ss_pred eeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC--CCCCCCCHHH
Q psy12958 15 FFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED--NVVSVPSQEV 92 (294)
Q Consensus 15 ~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~--~~~i~PCr~l 92 (294)
+|+||.++| |+||+||.|.|||. +||++|+||+.+++.|.+|++. +||+++++||||+|+|+|++ +++++|||++
T Consensus 1 ~Cepi~~~~-C~~l~Yn~T~~PN~-lgh~~q~ea~~~~~~~~pLv~~-~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRsl 77 (120)
T cd07456 1 KCEEITIPM-CKGIGYNMTYMPNQ-FNHDTQEEAGLEVHQFWPLVEI-QCSPDLKFFLCSMYTPICLEDYDKPLPPCRSV 77 (120)
T ss_pred CccccChhh-hCCCCCCcccCCCc-CCCcCHHHHHHHHHHHHHHHhC-CCChhHHHHhHhccCcccCCCCCCcCCccHHH
Confidence 589999999 59999999988885 7999999999999999999999 99999999999999999986 4789999999
Q ss_pred HhhhcCCcccccc---ccCCCCCCCCCCCCCC
Q psy12958 93 CKLLSGPCRIVAQ---ELSPEFNCQNGTKISS 121 (294)
Q Consensus 93 Ce~v~~~C~~~~~---~~WP~~l~C~~~P~~p 121 (294)
||++|++|+++|+ +.||+.++|++||...
T Consensus 78 Ce~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~ 109 (120)
T cd07456 78 CERARDGCAPIMRQYGFAWPERMSCDALPEGG 109 (120)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCChhhCCCCC
Confidence 9999999999985 7999999999987653
No 18
>cd07461 CRD_FZ8 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 8 (Fz8) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 8 (Fz8) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz8 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=99.96 E-value=1.4e-30 Score=214.57 Aligned_cols=104 Identities=19% Similarity=0.254 Sum_probs=97.0
Q ss_pred eeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC--CCCCCCCHH
Q psy12958 14 VFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED--NVVSVPSQE 91 (294)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~--~~~i~PCr~ 91 (294)
..|+||.++| |+||+||.|.+||. +||+||+||+.+++.|.+|++. +||+++++||||+|+|+|++ +++++|||+
T Consensus 3 ~~C~pI~~~~-C~~l~Yn~T~~PN~-l~H~sq~ea~~~~~~f~pLv~~-~Csp~l~~FlCSl~~P~C~~~~~~~i~PCRs 79 (125)
T cd07461 3 LQCQEITVPL-CKGIGYNYTYMPNQ-FNHDTQDEAGLEVHQFWPLVEI-QCSPDLKFFLCSMYTPICLEDYKKPLPPCRS 79 (125)
T ss_pred CcccccCHHH-hCCCCCCcccCCCc-cCCCCHHHHHHHHHHHHHHHhC-CCChhHHHHhhhccCcccCCCCCCcCCccHH
Confidence 4699999999 59999999988885 7999999999999999999999 99999999999999999986 478999999
Q ss_pred HHhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958 92 VCKLLSGPCRIVAQ---ELSPEFNCQNGTKIS 120 (294)
Q Consensus 92 lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~ 120 (294)
+||+||++|+++|+ +.||+.|+|++||.-
T Consensus 80 lCe~vr~~C~~~m~~~g~~WP~~l~C~~fP~~ 111 (125)
T cd07461 80 VCERAKAGCAPLMRQYGFPWPDRMRCDLLPEQ 111 (125)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCChhhCCCC
Confidence 99999999999995 799999999998764
No 19
>cd07444 CRD_SFRP5 Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 5 (SFRP5), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=99.96 E-value=2.4e-30 Score=213.47 Aligned_cols=111 Identities=18% Similarity=0.314 Sum_probs=101.0
Q ss_pred eeeeeeeeE--eccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCCCCCCCCC
Q psy12958 12 TKVFFAPVN--VELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPS 89 (294)
Q Consensus 12 ~~~~~~~~~--~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~~~~i~PC 89 (294)
++..|.||. ++| |+||+||.+.+|| ++||+||+||+.+++.|.+|++. +||+++++||||+|+|+|. +++++||
T Consensus 3 ~~~~C~pIp~~l~~-C~~l~Yn~T~~PN-~lgH~~q~ea~~~~~~~~pLv~~-~C~p~l~~FlCSl~~P~C~-~~~i~PC 78 (127)
T cd07444 3 KQPQCVDIPADLPL-CHNVGYKRMRLPN-LLEHESMAEVKQQASSWVPLLAK-RCHADTQVFLCSLFAPVCL-DRPIYPC 78 (127)
T ss_pred CCCCceECCCCchh-hcCCCCCceeCCc-ccCCCCHHHHHHHHHHHHHHHhc-ccCHHHHHHhhhhcCCCCC-CCCCCCc
Confidence 467899886 999 5999999998887 57999999999999999999998 9999999999999999998 6899999
Q ss_pred HHHHhhhcCCcccccc---ccCCCCCCCCCCCCCCCCCCC
Q psy12958 90 QEVCKLLSGPCRIVAQ---ELSPEFNCQNGTKISSHSCKN 126 (294)
Q Consensus 90 r~lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~p~~c~~ 126 (294)
|++||+||++|+++|+ +.||+.|+|++||.-.++|++
T Consensus 79 RslCe~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~C~~ 118 (127)
T cd07444 79 RSLCEAVRDSCAPVMESYGFPWPEMLHCHKFPLDNDLCIA 118 (127)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCChhhCCCCCCcccc
Confidence 9999999999999985 899999999999876556664
No 20
>cd07448 CRD_FZ4 Cysteine-rich Wnt-binding domain of the frizzled 4 (Fz4) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 4 (Fz4) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and the Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Frizzled 4 (Fz4) activates the Ca(2+)/calmodulin-dependent protein kinase II and protein kinase C of the Wnt/Ca(2+) signaling pathway during retinal angiogenesis. Mutations in Fz4 lead to familial exudative vitreoretinopathy (FEVR
Probab=99.96 E-value=3.4e-30 Score=212.78 Aligned_cols=104 Identities=18% Similarity=0.281 Sum_probs=96.5
Q ss_pred eeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC--CCCCCCCHH
Q psy12958 14 VFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED--NVVSVPSQE 91 (294)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~--~~~i~PCr~ 91 (294)
..|+||.+++ |+|++||.|.+|| ++||++|+||+.+++.|.+|++. +||+++++||||+|+|+|++ +++++|||+
T Consensus 2 ~~Cepi~~~~-C~~l~Yn~T~~PN-~lgh~sq~ea~~~l~~~~pLv~~-~Csp~l~~flCsl~~P~C~~~~~~~i~PCRs 78 (126)
T cd07448 2 RRCEPIRIEM-CQGLGYNVTRMPN-LVGHELQTDAELQLQTFTPLIQY-GCSSQLKFFLCSVYVPMCTEKVPVPIGPCRP 78 (126)
T ss_pred CeeeeCCHHH-hCCCCcccccCCC-cCCCcCHHHHHHHHHHHHHHhhc-CCChhHHhHhhhccccccCCCCCCcCCcCHH
Confidence 4799999999 5999999999888 58999999999999999999998 99999999999999999986 468999999
Q ss_pred HHhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958 92 VCKLLSGPCRIVAQ---ELSPEFNCQNGTKIS 120 (294)
Q Consensus 92 lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~ 120 (294)
+||+||++|+++|+ +.||+.|+|++||..
T Consensus 79 lCe~vr~~C~~~m~~~g~~WP~~l~C~~fP~~ 110 (126)
T cd07448 79 LCLSVKKRCLPVLKEFGFPWPEALNCSKFPPQ 110 (126)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCCcccCCCC
Confidence 99999999999984 689999999998754
No 21
>cd07447 CRD_Carboxypeptidase_Z Cysteine-rich domain of carboxypeptidase Z, a member of the carboxypeptidase E family. The cysteine-rich-domain (CRD) is an essential part of carboxypeptidase Z, a member of the carboxypeptidase E family of metallocarboxypeptidases. This is a group of Zn-dependent enzymes implicated in the intra- and extracellular processing of proteins. Carboxypeptidase Z removes C-terminal basic amino acid residues from its substrates, particularly arginine. The CRD acts as a ligand-binding domain for Wnts involved in developmental processes. CPZ binds and may process Wnt-4, CPZ has also been found to enhance the induction of the homeobox gene Cdx1. During vertebrate embryogenesis, the CRD of CPZ upregulates Pax3, a Wnt reporter gene essential for patterning of somites and limb development.
Probab=99.96 E-value=3.1e-30 Score=213.15 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=95.5
Q ss_pred eeeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHH-----HhhhhhhcCCCCcchhhHHhhhhccCcCCCCCCCCC
Q psy12958 13 KVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNER-----LKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSV 87 (294)
Q Consensus 13 ~~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~-----l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~~~~i~ 87 (294)
|-.|+||.+++ |+|++||.|.+||. +||+||+|++.. ++.|.+|++. +||+++++||||+|+|+|+++++++
T Consensus 1 ~~~CepI~~~~-C~~l~Yn~T~~PN~-lgH~sq~~~~~~~~~~~l~~f~pLv~~-~C~p~l~~FLCSl~~P~C~~~~~i~ 77 (128)
T cd07447 1 SATCTDLLLSY-CSDVSYTQTTFPNL-LGHRSREVTEAGAEYLLLSVLHGLLGG-ECNPDIRLLGCSVLAPRCENDKVIK 77 (128)
T ss_pred CCcccCCChhh-cCCCCCCcccCCcc-cCCCCHHHHHhhhhHhHHHHHhhhhhc-CcChhHHhHhhcccccccCCCCccC
Confidence 56799999999 59999999999985 799999987543 7899999998 9999999999999999999888999
Q ss_pred CCHHHHhhhcCCcccccc---ccCCCCCCCCCCCC
Q psy12958 88 PSQEVCKLLSGPCRIVAQ---ELSPEFNCQNGTKI 119 (294)
Q Consensus 88 PCr~lCe~v~~~C~~~~~---~~WP~~l~C~~~P~ 119 (294)
|||++||+||++|+++|. +.||+.|+|++||.
T Consensus 78 PCRslCe~vr~~C~~~m~~fg~~WP~~L~C~~fP~ 112 (128)
T cd07447 78 PCRSTCEALRKRCSHAFDAIQMAWPYFLDCDRFFA 112 (128)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCcCccccCCC
Confidence 999999999999999984 79999999999875
No 22
>smart00063 FRI Frizzled. Drosophila melanogaster frizzled mediates signalling that polarises a precursor cell along the anteroposterior axis. Homologues of the N-terminal region of frizzled exist either as transmembrane or secreted molecules. Frizzled homologues are reported to be receptors for the Wnt growth factors. (Not yet in MEDLINE: the FRI domain occurs in several receptor tyrosine kinases [Xu, Y.K. and Nusse, Curr. Biol. 8 R405-R406 (1998); Masiakowski, P. and Yanopoulos, G.D., Curr. Biol. 8, R407 (1998)].
Probab=99.96 E-value=4.5e-30 Score=208.61 Aligned_cols=108 Identities=20% Similarity=0.439 Sum_probs=98.8
Q ss_pred eeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCCCC-CCCCCHHHHh
Q psy12958 16 FAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNV-VSVPSQEVCK 94 (294)
Q Consensus 16 ~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~~~-~i~PCr~lCe 94 (294)
|+||.+++ |+|++||.|.+||. +||++|+||+.+++.|.+|++. +||+++++||||+|+|+|+++. +++|||++|+
T Consensus 1 C~pi~~~~-C~~l~Yn~T~~PN~-l~h~~q~ea~~~l~~~~~L~~~-~C~p~l~~flCsl~~P~C~~~~~~~~PCRs~Ce 77 (113)
T smart00063 1 CEPITIPL-CKDLGYNLTSMPNL-LGHTTQEEAGLELEQFHPLLNV-QCSPDLRFFLCSVYAPICTEDLRPILPCRSLCE 77 (113)
T ss_pred CcCCCcHh-HCCCCcccccCCCc-cCCCCHHHHHHHHHHHHhhccC-CCChhHHHHhHhccCcccCCCCCcCCcCHHHHH
Confidence 68999999 59999999988885 7999999999999999999999 9999999999999999998743 6999999999
Q ss_pred hhcCCcccccc---ccCCCCCCCCCCCCCCCCCCC
Q psy12958 95 LLSGPCRIVAQ---ELSPEFNCQNGTKISSHSCKN 126 (294)
Q Consensus 95 ~v~~~C~~~~~---~~WP~~l~C~~~P~~p~~c~~ 126 (294)
++|++|++++. ..||+.|+|++||...+.|++
T Consensus 78 ~vr~~C~~~~~~~g~~WP~~l~C~~fP~~~~~C~~ 112 (113)
T smart00063 78 AAREGCEPLMEKFGFPWPEFLRCDRFPVQEELCMD 112 (113)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCCCCCC
Confidence 99999999984 789999999999877666654
No 23
>cd07446 CRD_SFRP2 Cysteine-rich domain of the secreted frizzled-related protein 2 (SFRP2), a regulator of Wnt activity. The cysteine-rich-domain (CRD) is an essential part of the secreted frizzled related protein 2 (SFRP2), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. As a Wnt antagonist, SFRP2 regulates Nkx2.2 expression in the ventral spinal cord and anteroposterior axis elongation. SFRP2 also has a Wnt-independent function as an enhancer of procollagen cleavage by the TLD proteinases. SFRP2 binds both procollagen and TLD, thus facilitating the enzymatic reaction by bringing togeth
Probab=99.96 E-value=7.5e-30 Score=211.01 Aligned_cols=111 Identities=19% Similarity=0.318 Sum_probs=100.5
Q ss_pred eeeeeeeE--eccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC--CCCCCC
Q psy12958 13 KVFFAPVN--VELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED--NVVSVP 88 (294)
Q Consensus 13 ~~~~~~~~--~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~--~~~i~P 88 (294)
+..|+||. +++ |+|++||.+.+||. +||+||+||..+++.|.+|++. +||+++++||||+|+|+|++ +++++|
T Consensus 2 ~s~C~pI~~~l~~-C~~l~Yn~T~~PN~-lgH~sq~ea~~~~~~~~pLv~~-~C~p~l~~FlCSl~~P~C~~~~~~~i~P 78 (128)
T cd07446 2 KSNCKPIPANMLL-CHGIEYTNMRLPNL-LGHETMKEVLQQAGSWIPLVQK-QCHPDTKKFLCSLFAPVCLDDLDEAIQP 78 (128)
T ss_pred CCCceECCCCchh-hcCCCCCcccCCcc-cCCCCHHHHHHHHHHHHHHHhc-CCChhhHHHhhhccCccccCCCCCcCCc
Confidence 45789997 889 59999999998885 7999999999999999999998 99999999999999999986 579999
Q ss_pred CHHHHhhhcCCcccccc---ccCCCCCCCCCCCCCCCCCCC
Q psy12958 89 SQEVCKLLSGPCRIVAQ---ELSPEFNCQNGTKISSHSCKN 126 (294)
Q Consensus 89 Cr~lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~p~~c~~ 126 (294)
||++||+||++|+++|. +.||+.|+|++||...++|+.
T Consensus 79 CRslCe~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~Ci~ 119 (128)
T cd07446 79 CRSLCEAVKDGCAPVMSAFGFPWPDMLDCTRFPLDNDLCIP 119 (128)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCCCCcccCCCCCCcccC
Confidence 99999999999999984 799999999999875556653
No 24
>cd07443 CRD_SFRP1 Cysteine-rich domain of the secreted frizzled-related protein 1 (SFRP1), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 1 (SFRP1), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP1 is expressed in many tissues and is involved in the regulation of Wnt signaling in osteoblasts, leading to enhanced trabecular bone formation in adults; it has also been shown to control the gro
Probab=99.96 E-value=9.9e-30 Score=208.99 Aligned_cols=110 Identities=18% Similarity=0.272 Sum_probs=99.9
Q ss_pred eeeeeeeeE--eccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCCCCCCCCC
Q psy12958 12 TKVFFAPVN--VELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPS 89 (294)
Q Consensus 12 ~~~~~~~~~--~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~~~~i~PC 89 (294)
+|..|.||- +++ |+|++||.+.+|| ++||+||+||+.+++.|.+|++. +||+++++||||+|+|+|. +++++||
T Consensus 3 ~~~~C~pIp~~l~~-C~~l~Yn~T~~PN-~lgH~sq~ea~~~~~~~~pLv~~-~C~p~l~~FlCsl~~P~C~-~~~i~PC 78 (124)
T cd07443 3 KPPQCVDIPADLRL-CHNVGYKKMVLPN-LLDHETMAEVKQQASSWVPLLNK-NCHKGTQVFLCSLFAPVCL-DRPVYPC 78 (124)
T ss_pred CCCCceECCCchhh-hcCCCCCceeCcc-ccCCCCHHHHHHHHHHHHHHHhc-cccHHHHHHhhheeccCCC-CCCCCCC
Confidence 567899996 999 6999999998888 57999999999999999999998 9999999999999999998 6789999
Q ss_pred HHHHhhhcCCcccccc---ccCCCCCCCCCCCCCCCCCCC
Q psy12958 90 QEVCKLLSGPCRIVAQ---ELSPEFNCQNGTKISSHSCKN 126 (294)
Q Consensus 90 r~lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~p~~c~~ 126 (294)
|++||+||++|+++|. +.||+.|+|++||.. +.|+.
T Consensus 79 RslCe~vr~~C~~~m~~~g~~WP~~L~C~~fP~~-~~ci~ 117 (124)
T cd07443 79 RWLCEAVRDSCEPVMQFFGFYWPEMLKCDKFPEG-EVCIA 117 (124)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCC-CCccC
Confidence 9999999999999984 799999999998853 45654
No 25
>cd07888 CRD_corin_2 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the second (C-terminal) CRD.
Probab=99.96 E-value=1.1e-29 Score=208.50 Aligned_cols=102 Identities=17% Similarity=0.263 Sum_probs=93.7
Q ss_pred eeeeEeccccccccCCCccccCCcCCCCCHHHHHH--HHhhhhhhcCCCCcchhhHHhhhhccCcCCCC--CCCCCCCHH
Q psy12958 16 FAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNE--RLKRWQGLKYIPKCWAVIQSFLCALYMPKCED--NVVSVPSQE 91 (294)
Q Consensus 16 ~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~--~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~--~~~i~PCr~ 91 (294)
|+||.+++ |+|++||.|.||| ++||+||+||+. +++.|.+|++. +||+++++||||+|+|+|+. +++++|||+
T Consensus 2 CepI~~~~-C~~l~Yn~T~~PN-~lgH~sq~ea~~~~~~~~f~pLv~~-~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRs 78 (122)
T cd07888 2 CEPITLEL-CMNLPYNTTRYPN-YLGHRTQKEASISWESSLFPALVQT-NCYKYLMFFACTILVPKCDPVTQQRIPPCRS 78 (122)
T ss_pred CccCCHhh-hCCCCcCcccCCc-ccCCCCHHHHHHhhhHHHHHhHHhc-CCChhHHHHHHhccCccccCCCCCCCCCcHH
Confidence 78999999 5999999999988 579999999976 46799999999 99999999999999999985 578999999
Q ss_pred HHhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958 92 VCKLLSGPCRIVAQ---ELSPEFNCQNGTKIS 120 (294)
Q Consensus 92 lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~ 120 (294)
+||+||++|+++|. +.||+.|+|++||.-
T Consensus 79 lCe~vr~~C~~~m~~fg~~WP~~l~C~~fP~~ 110 (122)
T cd07888 79 LCRNSKERCESVLGIVGLQWPEDTDCAQFPEE 110 (122)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCccccCCCC
Confidence 99999999999994 899999999998754
No 26
>cd07445 CRD_corin_1 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the first (N-terminal) CRD.
Probab=99.96 E-value=1.1e-29 Score=209.44 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=94.6
Q ss_pred eeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCCC----CCCCCC
Q psy12958 14 VFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDN----VVSVPS 89 (294)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~~----~~i~PC 89 (294)
..|+||.|+| |+||.||.|.|||. +||++ +||+.+++.|.+|++. +||+++++||||+|+|+|+++ ++++||
T Consensus 3 ~~CepI~i~~-C~~l~YN~T~~PN~-lgh~~-~ea~~~l~~f~pLv~~-~Csp~l~~FLCSlyaP~C~~~~~~~~~i~PC 78 (130)
T cd07445 3 SACMNITHSQ-CQMLPYHSTLKPSL-LSVKN-MEMEKFLKFFSYLHRL-SCYQHIMLFGCSLALPECISDGDDRHGLLPC 78 (130)
T ss_pred CccccCChhh-hCCCCCccccCCcc-ccccC-HHHHHHHHhhcccccc-CcChhhHHHhhhccCccccCCCCCCCcCCCC
Confidence 5799999999 59999999988885 79987 5999999999999999 999999999999999999862 489999
Q ss_pred HHHHhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958 90 QEVCKLLSGPCRIVAQ---ELSPEFNCQNGTKIS 120 (294)
Q Consensus 90 r~lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~ 120 (294)
|++||+||++|+++|+ +.||+.|+|++||..
T Consensus 79 RslCe~vr~~C~~~m~~fg~~WPe~L~C~~fP~~ 112 (130)
T cd07445 79 RSFCEAAKEGCEPVLGMVNASWPDFLRCSQFRNN 112 (130)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcCCccccCCC
Confidence 9999999999999994 899999999998764
No 27
>cd07453 CRD_crescent Cysteine-rich domain of the crescent protein. The cysteine-rich domain (CRD) is an essential part of the crescent protein, a member of the secreted frizzled-related protein (SFRP) family, which regulates convergent extension movements (CEMs) during gastrulation and neurulation. Xenopus laevis crescent efficiently forms inhibitory complexes with Wnt5a and Wnt11, but this effect is cancelled in the presence of another member of the SFRP family, Frzb1. A potential role for Crescent in head formation is to regulate a non-canonical Wnt pathway positively in the adjacent posterior mesoderm, and negatively in the overlying anterior neuroectoderm.
Probab=99.96 E-value=1.9e-29 Score=209.88 Aligned_cols=107 Identities=19% Similarity=0.316 Sum_probs=97.1
Q ss_pred eeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCCCCCCCCCHHHHhhh
Q psy12958 17 APVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLL 96 (294)
Q Consensus 17 ~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~~~~i~PCr~lCe~v 96 (294)
.|+++++ |+||+||.+.+|| ++||+||+||..++..|.+|++. +||+++++||||+|+|+|+ +++++|||++||+|
T Consensus 6 iP~~l~~-C~~l~Yn~T~~PN-~lgH~sq~ea~~~~~~~~pLv~~-~C~p~l~~FLCSl~~P~C~-~~~i~PCRslCe~v 81 (135)
T cd07453 6 IPKSMAL-CYDIGYSEMRIPN-LLEHETMAEVIQQSSSWLPLLAR-ECHPDARIFLCSLFAPICW-DRPIYPCRSLCEAV 81 (135)
T ss_pred CCCcchh-hCCCCCCcccCCc-ccCCCCHHHHHHHHHHHHHHHhc-CCChhhHHHhhhhcCccCC-CCCCCccHHHHHHH
Confidence 3777889 6999999998888 57999999999999999999998 9999999999999999999 88999999999999
Q ss_pred cCCcccccc---ccCCCCCCCCCCCCCCCCCCCC
Q psy12958 97 SGPCRIVAQ---ELSPEFNCQNGTKISSHSCKNE 127 (294)
Q Consensus 97 ~~~C~~~~~---~~WP~~l~C~~~P~~p~~c~~~ 127 (294)
|++|+++|+ +.||+.|+|++||.-.++|+++
T Consensus 82 r~~C~~~m~~~g~~WP~~l~C~~fP~~~~~Ci~p 115 (135)
T cd07453 82 RSSCAPLMACYGYPWPEILHCDKFPVDHDLCISP 115 (135)
T ss_pred HHHHHHHHHHhCCCCCCCCChhhCCCCCCcccCC
Confidence 999999984 8999999999998655556543
No 28
>cd07452 CRD_sizzled Cysteine-rich domain of the sizzled protein. The cysteine-rich domain (CRD) is an essential part of the sizzled protein, which regulates bone morphogenetic protein (Bmp) signaling by stabilizing chordin, and plays a critical role in the patterning of vertebrate and invertebrate embryos. Sizzled also functions in the ventral region as a Wnt inhibitor and modulates canonical Wnt signaling. Sizzled proteins belong to the secreted frizzled-related protein family (SFRP), and have be identified in the genomes of birds, fishes and frogs, but not mammals.
Probab=99.95 E-value=3.3e-29 Score=209.74 Aligned_cols=111 Identities=18% Similarity=0.330 Sum_probs=100.6
Q ss_pred eeeeeeeE--eccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCCCCCCCCCH
Q psy12958 13 KVFFAPVN--VELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQ 90 (294)
Q Consensus 13 ~~~~~~~~--~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~~~~i~PCr 90 (294)
...|.||. ++| |+||+||.+.+||. +||+||+||..++..|.+|++. +||+++++||||+|+|+|. +++++|||
T Consensus 6 s~~C~pIp~~l~~-C~~l~Yn~T~~PN~-lgH~sq~ea~~~~~~f~pLv~~-~C~p~l~~FlCSl~~P~C~-~~~i~PCR 81 (141)
T cd07452 6 STKCVPIPPEMSM-CQDVGYSEMRLPNL-LGHTSMAEVVPKSADWQTLLHT-GCHPHARTFLCSLFAPVCL-DTFIQPCR 81 (141)
T ss_pred CCcceeCCCcchh-hcCCCCCcccCCcc-cCCCCHHHHHHHHHHHHHHHhc-CCCHHHHHHhHhhcccCCC-CCCCcCCH
Confidence 35799995 999 59999999998885 7999999999999999999998 9999999999999999998 57889999
Q ss_pred HHHhhhcCCcccccc---ccCCCCCCCCCCCCCCCCCCCC
Q psy12958 91 EVCKLLSGPCRIVAQ---ELSPEFNCQNGTKISSHSCKNE 127 (294)
Q Consensus 91 ~lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~p~~c~~~ 127 (294)
++||+||++|+++|. +.||+.|+|++||...++|+++
T Consensus 82 slCe~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~~~C~~~ 121 (141)
T cd07452 82 SMCVAVRDSCAPVLACHGHSWPESLDCDRFPAGEDMCLAS 121 (141)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCcccCCCCCCccCCC
Confidence 999999999999984 8999999999998765567654
No 29
>cd07455 CRD_Collagen_XVIII Cysteine-rich domain of the variant 3 of collagen XVIII (V3C18 ). The cysteine-rich domain (CRD) is an essential part of the variant 3 of collagen XVIII (V3C18), which regulates major cellular functions such as the differential epithelial morphogenesis of early lung and kidney development. V3C18 is a 170 kD protein, which is proteolotically processed into the CRD-containing 50 kD glucoprotein precursor that binds Wnt3a through its CRD domain and suppresses the Wnt3a-induced stabilization of beta catenin. Full-length V3C18 is unable to inhibit Wnt signaling.
Probab=99.94 E-value=2.4e-28 Score=200.26 Aligned_cols=101 Identities=18% Similarity=0.288 Sum_probs=93.0
Q ss_pred eeeee--EeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC--CCCCCCCH
Q psy12958 15 FFAPV--NVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED--NVVSVPSQ 90 (294)
Q Consensus 15 ~~~~~--~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~--~~~i~PCr 90 (294)
.|+|| .+++ |+||+||.+.+||. +||+||+||+.+++.|.+|++. +||+++++||||+|+|+|++ .++++|||
T Consensus 4 ~C~pIp~~l~~-C~~l~Yn~t~~PN~-lgH~sq~ea~~~~~~f~pLv~~-~Csp~l~~FlCs~~~P~C~~~~~~~i~PCR 80 (123)
T cd07455 4 RCLPVPSSLPF-CSRLGIRSFWLPNF-LNHTSVEEVRAVLAEWAWLLES-GCHPSLEWFFCLLLVPSCGGGPPPPPPPCR 80 (123)
T ss_pred CCccCCCcccc-ccCCCcccccCCcc-cCCCCHHHHHHHHHHHHHHHhC-CCChhhHHHhhhccCCcccCCCCCcCCccH
Confidence 58888 9999 69999999988885 7999999999999999999998 99999999999999999986 35699999
Q ss_pred HHHhhhcCCcccccc-ccCCCCCCCCCCCCC
Q psy12958 91 EVCKLLSGPCRIVAQ-ELSPEFNCQNGTKIS 120 (294)
Q Consensus 91 ~lCe~v~~~C~~~~~-~~WP~~l~C~~~P~~ 120 (294)
++||+||++|+++|+ +.|| ++|++||..
T Consensus 81 slCe~vr~~C~~~m~~fg~p--l~C~~fP~~ 109 (123)
T cd07455 81 QFCEVLQDSCWNLLEGGRLP--VACASLPEQ 109 (123)
T ss_pred HHHHHHHHHHHHHHHccCCC--ChHHHCCCC
Confidence 999999999999995 7888 899998764
No 30
>cd07066 CRD_FZ CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain. CRD_FZ is an essential component of a number of cell surface receptors, which are involved in multiple signal transduction pathways, particularly in modulating the activity of the Wnt proteins, which play a fundamental role in the early development of metazoans. CRD is also found in secreted frizzled related proteins (SFRPs), which lack the transmembrane segment found in the frizzled protein. The CRD domain is also present in the alpha-1 chain of mouse type XVIII collagen, in carboxypeptidase Z, several receptor tyrosine kinases, and the mosaic transmembrane serine protease corin. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. CRD domains have also been identified in multiple tandem copies in a Dictyostelium discoideum protein. Very little is known about the mechanism by which CRD domains interact wit
Probab=99.88 E-value=4.9e-23 Score=167.91 Aligned_cols=104 Identities=18% Similarity=0.308 Sum_probs=94.4
Q ss_pred eeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCCC--CCCCCCHHH
Q psy12958 15 FFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDN--VVSVPSQEV 92 (294)
Q Consensus 15 ~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~~--~~i~PCr~l 92 (294)
.|+||..++ |++++||.+.+||. +||++|+||+.++..+.+|++. +||++++.|+|++|+|+|+.+ .+++|||++
T Consensus 1 ~C~pi~~~~-C~~~~Yn~t~~pn~-~~~~~~~~a~~~~~~~~~l~~~-~C~~~~~~f~Cs~~~P~C~~~~~~~~~PCRs~ 77 (119)
T cd07066 1 KCEPIPLPL-CRGLPYNTTRFPNL-LGHESQEEAEQELESFTPLVNS-GCHPDLRFFLCSLYFPECTPDGDRPIPPCRSL 77 (119)
T ss_pred CCccCCHHH-hCCCCCCceeCCCc-cCCCCHHHHHHHHHHHHHHHhc-CCChhHHHHHHhccCccccCCCCCcCCChHHH
Confidence 488999999 59999988877775 6999999999999999999998 999999999999999999974 489999999
Q ss_pred HhhhcCCcccccc---ccCCCCCCCCCCCCCC
Q psy12958 93 CKLLSGPCRIVAQ---ELSPEFNCQNGTKISS 121 (294)
Q Consensus 93 Ce~v~~~C~~~~~---~~WP~~l~C~~~P~~p 121 (294)
|++|++.|+..+. ..||+.++|+++|...
T Consensus 78 Ceev~~~C~~~~~~~~~~wp~~~~C~~~p~~~ 109 (119)
T cd07066 78 CEEVRDSCEPLMLAFGFPWPEPLDCDRFPDSN 109 (119)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCccccCCCC
Confidence 9999999999884 6799999999987653
No 31
>PF01392 Fz: Fz domain; InterPro: IPR020067 The frizzled (fz) domain is an extracellular domain of about 120 amino acids.It was first identified in the alpha-1 chain of type XVIII collagen and in members of the Frizzled family of seven transmembrane (7TM) proteins which act as receptors for secreted Wingless (Wg)/Wnt glycoproteins []. In addition to these proteins, one or two copies of the fz domain are also found [, , , , ] in: The frizbee (Frzb) family; secreted frizzled-like proteins. Smoothened; another 7TM receptor involved in hedgehog signaling. Carboxpeptidase Z (CPZ). Transmembrane serine protease corin. Two receptor tyrosine kinases (RTKs) subfamilies, the Ror family and the muscle-specific kinase (MuSK) family. As the fz domain contains 10 cysteines which are largely conserved, it has also been called cysteine-rich domain (CRD) []. The fz domain also contains several other highly conserved residues, for example, a basic amino acid follows C6, and a conserved proline residues lies four residues C-terminal to C9 []. The crystal structure of a fz domain shows that it is predominantly alpha-helical with all cysteines forming disulphide bonds. In addition to helical regions, two short beta-strands at the N terminus form a minimal beta-sheet with the second beta sheet passing through a knot created by disulphide bonds []. Several fz domains have been shown to be both necessary and sufficient for Wg/Wnt ligand binding, strongly suggesting that the fz domain is a Wg/Wnt interacting domain [, ].; GO: 0005515 protein binding; PDB: 1IJX_E 3HKL_B 1IJY_B 4F0A_A.
Probab=99.82 E-value=5.6e-21 Score=153.82 Aligned_cols=102 Identities=19% Similarity=0.379 Sum_probs=84.1
Q ss_pred eeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCCCC---CCCCCHHH
Q psy12958 16 FAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNV---VSVPSQEV 92 (294)
Q Consensus 16 ~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~~~---~i~PCr~l 92 (294)
|+||+.++ |+++.|+.+.+||. +||.+|+|++.++..|..|++. +|+++++.|||++++|+|.++. +.+|||++
T Consensus 1 C~pi~~~~-C~~~~y~~t~~pn~-~~~~~~~~~~~~~~~~~~l~~~-~C~~~~~~flC~~~~P~C~~~~~~~~~~pCr~~ 77 (116)
T PF01392_consen 1 CEPITLSF-CRGLPYNQTSFPNS-LGHQTQDEASQQLNAFSTLVNS-GCHPYLRPFLCSLYFPPCDEGGPTPPLPPCRSL 77 (116)
T ss_dssp EEE---GG-GTTSS-TEEESSET-TTSSSHHHHHHHHHCCHHHHCC-TSHTTHHHHHHHHHS-BBBSSSSSSB-EB-HHH
T ss_pred CccCChHH-hcCCCCCceEeecc-cCCcCHHHHHHHHHHHHHHhcc-hhhHHHhhhhhcccCCcCCCCCcccccCCCHHH
Confidence 68999999 59999988888875 7999999999999999999999 9999999999999999998732 37899999
Q ss_pred HhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958 93 CKLLSGPCRIVAQ---ELSPEFNCQNGTKIS 120 (294)
Q Consensus 93 Ce~v~~~C~~~~~---~~WP~~l~C~~~P~~ 120 (294)
|+++++.|...+. ..||+.++|+++|..
T Consensus 78 C~~v~~~C~~~~~~~~~~~~~~~~C~~lP~~ 108 (116)
T PF01392_consen 78 CEEVKSSCSPELENLGLGWPSFLDCSNLPES 108 (116)
T ss_dssp HHHHHHHHHHHHHHTTTTTSGGG-GGGSS-T
T ss_pred ccccccccHHHHHHhcCCCCCCCCcccCCCC
Confidence 9999999999884 689999999998764
No 32
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=98.45 E-value=1.7e-06 Score=81.75 Aligned_cols=105 Identities=14% Similarity=0.271 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCceeecCCCc
Q psy12958 169 SKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGT 248 (294)
Q Consensus 169 t~~e~~~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~Per~Iifls~c~~~~Sl~~li~~~~g~~~~~i~C~~~~~ 248 (294)
+++|-+.......+.|++|++.++|.++||+.-++ +|.++.|-|+|++++-++.+++.++....+ + +
T Consensus 2 ~~~~~~~~~~i~~~~s~lSllGclfiI~tf~~~k~--~r~~~~rli~yl~~~~ll~~v~~~~~~~~~---~------~-- 68 (303)
T PF05462_consen 2 VKQQIRTLYAIELVASVLSLLGCLFIIITFCLFKR--LRKPINRLIFYLSIANLLTNVASMIMTLSP---S------A-- 68 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHHHhcc---c------C--
Confidence 46788899999999999999999999999997765 333378999999999999888776654322 0 0
Q ss_pred eeecCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy12958 249 LRVPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQE 290 (294)
Q Consensus 249 ~~~~~~~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa~~ 290 (294)
+..+..|.+.+++++||..|+.+|...+++.-|++...
T Consensus 69 ----~~~s~lC~~Qafliq~f~~as~lWt~~iA~nly~~~~~ 106 (303)
T PF05462_consen 69 ----GENSFLCQFQAFLIQFFMLASFLWTLCIAFNLYLTFVK 106 (303)
T ss_pred ----CCCCcchhhHhHHHHHhhHHHHHHHHHHHHHhhheeEE
Confidence 11246899999999999999999999999998887643
No 33
>cd07459 CRD_TK_ROR_like Cysteine-rich domain of tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=97.79 E-value=1.2e-05 Score=67.31 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=66.3
Q ss_pred eeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhh----hhhh--cCCCCcchhhHHhhhhccCcCCCC----C
Q psy12958 14 VFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKR----WQGL--KYIPKCWAVIQSFLCALYMPKCED----N 83 (294)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~----~~~L--~~~~~C~~~l~~fLCs~~~P~C~~----~ 83 (294)
++|+|=+=+.|.+.|. +.++|++.. .+|++.+.++.. +..+ +.. .|.+.+..+||..++|.|.+ .
T Consensus 1 G~C~~Y~G~vC~~~L~-~~~Vyv~~~---~~q~~~e~~l~~~~~~i~~~~~ls~-~C~~~a~~~lC~~~FP~C~~~~~~~ 75 (135)
T cd07459 1 GYCQPYRGSVCAKYLG-NKSVYVTSK---QTQEDIEEQLSAAFTVISTSSDVSP-KCQQYALPSLCYYAFPLCDEGSSTP 75 (135)
T ss_pred CcCccccchhhHHhcC-CCeEEEeCC---CCHHHHHHHHHHHHHHHHhcccccH-HHHHHHHHHHHHhhCCCCCCCCCCC
Confidence 3566666678655555 667787654 455554433332 2221 333 89999999999999999986 2
Q ss_pred CCCCCCHHHHhhhcC-Cccccc---c----ccCC-CCCCCCCCCCC
Q psy12958 84 VVSVPSQEVCKLLSG-PCRIVA---Q----ELSP-EFNCQNGTKIS 120 (294)
Q Consensus 84 ~~i~PCr~lCe~v~~-~C~~~~---~----~~WP-~~l~C~~~P~~ 120 (294)
.+.+.||+.|+.++. .|..-- + ..-. ..-+|+++|..
T Consensus 76 ~p~~iCre~C~~l~~~~C~~E~~~~~~~~~~g~~~~lp~C~~LP~~ 121 (135)
T cd07459 76 KPRRICRDECELLENDLCKKEYAIAKRHPLIGHQLLLPDCSSLPSP 121 (135)
T ss_pred CCCcccHHHHHHHHHhHhHHHHHHHHhCcccCCccCCCCccCCCCC
Confidence 345569999999997 898743 1 1100 12379998765
No 34
>cd07469 CRD_TK_ROR_related Cysteine-rich domain of proteins similar to tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands.
Probab=96.98 E-value=0.00039 Score=58.95 Aligned_cols=87 Identities=18% Similarity=0.282 Sum_probs=62.3
Q ss_pred eeeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhh--hhhh---cCCCCcchhhHHhhhhccCcCCCC--CCC
Q psy12958 13 KVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKR--WQGL---KYIPKCWAVIQSFLCALYMPKCED--NVV 85 (294)
Q Consensus 13 ~~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~--~~~L---~~~~~C~~~l~~fLCs~~~P~C~~--~~~ 85 (294)
.|+|+|=+=+.|-+.|.++...+.|.. ..++++++.+|.. |..+ +.. .|.+.....||...+|.|.. +.|
T Consensus 2 ~GyC~~Y~G~iC~~yL~~~~~V~~~~s--~~~~~~~~E~l~~~~~~e~~~~ls~-~Cr~~A~~~LC~~aFP~C~~~~~~p 78 (147)
T cd07469 2 AGYCATYRGEVCRAYLSNDALVWFNSS--YADPEGLNEQLTTGLWEELIKTVSE-LCRPAAEKLLCNYAFPECHPSGVGP 78 (147)
T ss_pred CCccccccchHHHHHhCCCcEEEEecC--CCCHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 578888888996555555556667764 4677777665544 5555 333 89999999999999999986 223
Q ss_pred C--CCCHHHHhhhcCC-ccc
Q psy12958 86 S--VPSQEVCKLLSGP-CRI 102 (294)
Q Consensus 86 i--~PCr~lCe~v~~~-C~~ 102 (294)
. +-||+-|+.++.. |..
T Consensus 79 ~p~plCredC~a~~~~~C~~ 98 (147)
T cd07469 79 TPKPLCREDCLAVKELFCYK 98 (147)
T ss_pred CcCchhHHHHHHHHHHHhHH
Confidence 2 3499999999754 543
No 35
>cd07467 CRD_TK_ROR1 Cysteine-rich domain of tyrosine kinase-like orphan receptor 1. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor 1 (Ror1), a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=96.96 E-value=0.00039 Score=58.60 Aligned_cols=101 Identities=12% Similarity=0.155 Sum_probs=70.2
Q ss_pred eeeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCC-----CCcchhhHHhhhhccCcCCCC--CC-
Q psy12958 13 KVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYI-----PKCWAVIQSFLCALYMPKCED--NV- 84 (294)
Q Consensus 13 ~~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~-----~~C~~~l~~fLCs~~~P~C~~--~~- 84 (294)
+|+|+|=+=+.| +....+.+.|++.. .+|.+++.++......++. ..|.+.+..+||...||.|.. ..
T Consensus 2 ~GyC~~YrG~vC-~~~L~~~~Vf~~~~---~~~~~~E~~l~aa~~~i~~s~~vs~~Cr~~A~~~LC~~~FP~C~~~~~~P 77 (142)
T cd07467 2 DGFCQPYRGIAC-ARFIGNRTIYMESL---HMQGEIENQITAAFTMIGTSSHLSDKCSQFAIPSLCHYAFPYCDETSGMP 77 (142)
T ss_pred CCccccccchHH-HHHhCCCeEEEeCC---CCHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhCCCCcccCCCC
Confidence 588999999995 66666656788754 5777777766644444422 279999999999999999986 22
Q ss_pred -CCCCCHHHHhhhc-CCccccc---c--------ccCCCCCCCCCCCCC
Q psy12958 85 -VSVPSQEVCKLLS-GPCRIVA---Q--------ELSPEFNCQNGTKIS 120 (294)
Q Consensus 85 -~i~PCr~lCe~v~-~~C~~~~---~--------~~WP~~l~C~~~P~~ 120 (294)
+..-||+-|+.++ +-|..-- + ...| +|+++|.+
T Consensus 78 ~pr~iCreeC~~le~~~C~~Ey~~a~~~~~i~~~~~LP---~C~~LP~~ 123 (142)
T cd07467 78 KPRDLCRDECEILENVLCQTEYIFARSNPMILMRLKLP---NCEDLAQP 123 (142)
T ss_pred CcchHHHHHHHHHHHHHhHHHHHHHHhCcccccccCCC---ChhhcCCC
Confidence 2334999999885 3465421 1 1233 69998875
No 36
>cd07468 CRD_TK_ROR2 Cysteine-rich domain of tyrosine kinase-like orphan receptor 2. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror2), a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=96.75 E-value=0.00079 Score=56.65 Aligned_cols=104 Identities=13% Similarity=0.210 Sum_probs=70.0
Q ss_pred eeeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCC-----CCcchhhHHhhhhccCcCCCC-C---
Q psy12958 13 KVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYI-----PKCWAVIQSFLCALYMPKCED-N--- 83 (294)
Q Consensus 13 ~~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~-----~~C~~~l~~fLCs~~~P~C~~-~--- 83 (294)
+|+|+|=+=+.| ++...+.+.|+... .+|.+++.++.....+++. ..|.+.+..+||...||.|.. +
T Consensus 2 ~G~C~~Y~G~vC-~~yL~~~~V~v~~~---~~~~~ie~~l~aa~~~i~~s~~ls~~Cr~~A~~~LC~~~Fp~C~~~~~~p 77 (140)
T cd07468 2 DGFCQPYRGIAC-ARFIGNRTIYVDSL---QMQGEIENRITAAFTMIGTSTHLSDQCSQFAIPSFCHFVFPLCDDRSRTP 77 (140)
T ss_pred CCcceeccChHH-HHHhCCCeEEEecC---CchHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 589999999996 44444455666543 5788888777744444333 279999999999999999986 2
Q ss_pred CCCCCCHHHHhhhc-CCccccc---c-c---cCC-CCCCCCCCCCC
Q psy12958 84 VVSVPSQEVCKLLS-GPCRIVA---Q-E---LSP-EFNCQNGTKIS 120 (294)
Q Consensus 84 ~~i~PCr~lCe~v~-~~C~~~~---~-~---~WP-~~l~C~~~P~~ 120 (294)
.+..-||+-|+.++ +-|..-- + + .-. ..-+|+++|.+
T Consensus 78 ~pr~iCreeC~~l~~~~C~~Ey~~a~~~~~i~~~~~LP~C~~LP~~ 123 (140)
T cd07468 78 KPRELCRDECEVLENDLCRQEYNIARSNPLILMQLQLPKCEELPLP 123 (140)
T ss_pred CCcchHHHHHHHHHHHHhHHHHHHHhhcccccccccCCchhhCCCC
Confidence 23334999999885 4465421 1 1 000 02279999876
No 37
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=96.59 E-value=0.0011 Score=59.61 Aligned_cols=100 Identities=11% Similarity=0.304 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCceeecCCCceeecCC
Q psy12958 175 SMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVPGP 254 (294)
Q Consensus 175 ~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~Per~Iifls~c~~~~Sl~~li~~~~g~~~~~i~C~~~~~~~~~~~ 254 (294)
.++....+..++|+++.+++++||...++ .|-++.+....++++.++..+.++++...- ++ .....
T Consensus 2 ~l~~i~~vg~~~Si~~ll~~i~~~~~~r~--lr~~~~~i~~~l~~sll~~~~~~l~~~~~~---~~---------~~~~~ 67 (242)
T PF00002_consen 2 ALSIISYVGCSLSIICLLLTIITYLLFRK--LRSFRNKIHLNLCLSLLLANLSFLIGISQT---FS---------PISTT 67 (242)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHHHh--hcccchhhhhhhHHHHHHHHHHHheehhhc---cc---------ccccc
Confidence 45677888899999999999999987744 333134456788888888888887753211 00 00000
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12958 255 RFDLCTVTFVIIYWSVISGLVWFIILTYILHITL 288 (294)
Q Consensus 255 ~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa 288 (294)
.+..|.+.++++|||.+|+..|..+.++..|...
T Consensus 68 ~~~~C~~~a~~~hy~~la~f~Wm~~~~~~l~~~~ 101 (242)
T PF00002_consen 68 NHCLCRAIAILLHYFFLASFFWMLVEAFYLYRLL 101 (242)
T ss_dssp ----------------------------------
T ss_pred ccccchhhhhHhHHHHHHHHHHHHHHHHHhheeE
Confidence 1235999999999999999999999998766654
No 38
>KOG4193|consensus
Probab=96.12 E-value=0.032 Score=57.65 Aligned_cols=90 Identities=13% Similarity=0.293 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCCcc--hHHHHHHHHHHHHHHHHHHhcCCCCCCceeecCCCceeec
Q psy12958 175 SMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQ--VILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVP 252 (294)
Q Consensus 175 ~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~Per--~Iifls~c~~~~Sl~~li~~~~g~~~~~i~C~~~~~~~~~ 252 (294)
......-|.-++|.++.+.+++||++-++- +- +| ..+=+++|-++.-+.+ +.| +..
T Consensus 321 ~l~~i~~VG~~iSlvcL~lti~ty~~~~~l--~~--~~~~i~~~l~~~L~l~~l~f----L~~---~~~----------- 378 (610)
T KOG4193|consen 321 LLDILSTVGCIISLVCLLLTIATYLLFRKL--QN--DRTKIHINLCLCLFLAELLF----LLG---IDR----------- 378 (610)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHH--Hh--hcchhHHHHHHHHHHHHHHH----hcc---ccc-----------
Confidence 344455677788888889999999987763 32 44 3334444433333333 223 111
Q ss_pred CCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12958 253 GPRFD-LCTVTFVIIYWSVISGLVWFIILTYILHI 286 (294)
Q Consensus 253 ~~~d~-~C~~~f~l~yff~maa~lWWvil~~~Wfl 286 (294)
..... .|.++.+++|||.||+..||.+.++--|+
T Consensus 379 ~~~~~~~C~~~a~llhff~LaaF~Wm~leg~hl~~ 413 (610)
T KOG4193|consen 379 TSTSVVLCIAAAILLHFFFLAAFFWMLLEGFHLYL 413 (610)
T ss_pred ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122 89999999999999999999999984443
No 39
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=93.70 E-value=0.38 Score=42.80 Aligned_cols=98 Identities=10% Similarity=0.113 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--CCCCcCCCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCceeecCCCceeecCC
Q psy12958 177 QNTIFVLAITCALFIVLSVLTLAIN--WEATSMYFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVPGP 254 (294)
Q Consensus 177 ~~~~~v~s~icf~~t~f~llTF~i~--~~r~~ry~Per~Iifls~c~~~~Sl~~li~~~~g~~~~~i~C~~~~~~~~~~~ 254 (294)
+....+.|.+|+++++.++..|..- ++|.+|+ +-|+.+.++=++.|+++++.-+. .++ ++ + + ..
T Consensus 4 r~~~i~~s~lSlls~~~~l~~~~~~~~r~~~fR~---~LIl~L~~aD~~qal~~~i~~~~-----~l~--~~-~--i-~~ 69 (201)
T PF11710_consen 4 RIGSIVISALSLLSSLAVLYLFFFITYRRRSFRH---QLILNLLLADFIQALAFLISPIR-----WLA--RG-G--I-IA 69 (201)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHH-----HHh--cC-C--e-eC
Confidence 3445566777777766666666643 3332443 47888999999999999882211 111 11 1 1 11
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12958 255 RFDLCTVTFVIIYWSVISGLVWFIILTYILHITL 288 (294)
Q Consensus 255 ~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa 288 (294)
.++.|.++|++.+.+..++.+|=.++++.=|+..
T Consensus 70 ~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v 103 (201)
T PF11710_consen 70 PSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIV 103 (201)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2478999999999999999999999998545543
No 40
>KOG4564|consensus
Probab=83.27 E-value=13 Score=37.59 Aligned_cols=99 Identities=10% Similarity=0.132 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCCcchH--HHHHHHHHHHHHHHHHHhc--CCCCCCceeecCCCcee-e
Q psy12958 177 QNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVI--LYINICFFNTCIGWLLQFT--PGIDKEDIVCQRDGTLR-V 251 (294)
Q Consensus 177 ~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~Per~I--ifls~c~~~~Sl~~li~~~--~g~~~~~i~C~~~~~~~-~ 251 (294)
+.+-.+.-++|+++-+.+++-|+..++ -+- .|.. .=+-++|++.++++++... .- +..-.+.++.... .
T Consensus 148 ~~lytvGyslSl~sL~vAl~If~~FR~--L~C--tRn~IH~nLF~SfiLra~~~~i~~~~l~~--~~~~~~~~~~~~~~~ 221 (473)
T KOG4564|consen 148 KILYTVGYSLSLVSLLVALIIFLYFRS--LHC--TRNYIHMNLFASFILRAASVLIKDLVLVV--NGEQDASSDTSLHCL 221 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh--hcc--hHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccccccccccccc
Confidence 355666777777777777777776654 455 4543 3345677888888887332 21 2222233322111 1
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy12958 252 PGPRFDLCTVTFVIIYWSVISGLVWFIILT 281 (294)
Q Consensus 252 ~~~~d~~C~~~f~l~yff~maa~lWWvil~ 281 (294)
.......|-+.+++++||.+|-..|-.+=.
T Consensus 222 ~~~~~~~Ck~~~~~~~Yf~~aNf~WmlvEG 251 (473)
T KOG4564|consen 222 ISSNPVGCKLLFVFFQYFVLANFFWMLVEG 251 (473)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111226899999999999999999977644
No 41
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=81.19 E-value=15 Score=36.18 Aligned_cols=76 Identities=7% Similarity=0.199 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCCCceeecCCCceeecCCCC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12958 212 QVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVPGPRF----DLCTVTFVIIYWSVISGLVWFIILTYILHIT 287 (294)
Q Consensus 212 r~Iifls~c~~~~Sl~~li~~~~g~~~~~i~C~~~~~~~~~~~~d----~~C~~~f~l~yff~maa~lWWvil~~~Wfla 287 (294)
|+++.+++|=++.++|-++|...-....++.=. .....++| .-|+.+-+-++||-+|...|....+++=+|-
T Consensus 69 rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s----~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv 144 (405)
T PF02101_consen 69 RILFWLAVADLLACLGVIVRSSVWLGFPNFIDS----ISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLV 144 (405)
T ss_pred hhHHHHHHHHHHhhhhHHHHhhhhhcCCccccc----ccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 578999999999999999976432001111100 01122344 3699999999999999999999999888886
Q ss_pred cccc
Q psy12958 288 LQEK 291 (294)
Q Consensus 288 a~~k 291 (294)
.+.+
T Consensus 145 ~~~~ 148 (405)
T PF02101_consen 145 IRRS 148 (405)
T ss_pred eecc
Confidence 5544
No 42
>PF12929 Mid1: Stretch-activated Ca2+-permeable channel component; InterPro: IPR024338 Mid1 is a yeast plasma membrane protein required for Ca2+ influx induced by the mating pheromone alpha-factor during the mating process [, , ]. The protein is composed of 548-amino-acid residues, contains four hydrophobic regions (H1, H2, H3 and H4) and two cysteine-rich regions (C1 and C2) at the C terminus. H1 appears to be a signal sequence necessary for the alpha-factor-induced delivery to the plasma membrane. The region from H1 to H3 is required for the localisation of Mid1 in the plasma and ER membranes. C1 and C2 are thought to be involved in oligomerisation via the formation of disulphide bonds. Trafficking of Mid1-GFP to the plasma membrane is dependent on the N-glycosylation of Mid1 and the transporter protein Sec12. This suggests that the trafficking of Mid1-GFP to the plasma membrane requires a Sec12-dependent pathway from the ER to the Golgi, and that Mid1 is recruited via a Sec6- and Sec7-independent pathway from the Golgi to the plasma membrane.
Probab=65.85 E-value=3.2 Score=41.34 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=17.9
Q ss_pred CCCCHHHHhhhcCCcccccc
Q psy12958 86 SVPSQEVCKLLSGPCRIVAQ 105 (294)
Q Consensus 86 i~PCr~lCe~v~~~C~~~~~ 105 (294)
++||.++|..+-++|.+.++
T Consensus 374 iLPC~dlCy~vVrsCP~~lG 393 (427)
T PF12929_consen 374 ILPCIDLCYAVVRSCPADLG 393 (427)
T ss_pred eccHHHHHHHHHhcCchhhC
Confidence 35899999999999999986
No 43
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=47.09 E-value=6.8 Score=32.07 Aligned_cols=59 Identities=15% Similarity=0.382 Sum_probs=32.2
Q ss_pred CCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCCcch-HHHHHHHHHHHHHHHHHH
Q psy12958 165 DPLYSKEEHE--SMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQV-ILYINICFFNTCIGWLLQ 231 (294)
Q Consensus 165 ~~~ft~~e~~--~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~Per~-Iifls~c~~~~Sl~~li~ 231 (294)
.|+|.++.++ .+...+++..++..+.|+..-+-|..+ |-+| -+|+++|..+.+++-++-
T Consensus 17 rPLFGE~~~r~riinliiG~vT~l~VLvtii~afvf~~~--------~p~p~~iffavcI~l~~~s~~lL 78 (118)
T PF10856_consen 17 RPLFGETSARDRIINLIIGAVTSLFVLVTIISAFVFPQD--------PPKPLHIFFAVCILLICISAILL 78 (118)
T ss_pred CcccCCCCcccEEEEeehHHHHHHHHHHHHhheEEecCC--------CCCceEEehHHHHHHHHHHHHhh
Confidence 4677554432 344444444444443333333333333 2333 389999999999987663
No 44
>PHA03235 DNA packaging protein UL33; Provisional
Probab=39.46 E-value=3.8e+02 Score=26.27 Aligned_cols=100 Identities=6% Similarity=-0.008 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-cCCCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCceeecCCCceeec
Q psy12958 174 ESMQNTIFVLAITCALFIVLSVLTLAINWEAT-SMYFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVP 252 (294)
Q Consensus 174 ~~~~~~~~v~s~icf~~t~f~llTF~i~~~r~-~ry~Per~Iifls~c~~~~Sl~~li~~~~g~~~~~i~C~~~~~~~~~ 252 (294)
...-....++.+++.+..++.++++....+++ .+- +..-|+=+|++=++..+..-+....+ . ...
T Consensus 33 ~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~-~~~~I~NLAvsDLl~l~~lP~~i~~~--~----------~~~- 98 (409)
T PHA03235 33 TTETFINLLIISVGGPLNLIVLVTQLLANRVHGFST-PTLYMTNLYLANLLTVFVLPFIMLSN--Q----------GLL- 98 (409)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc-cHHHHHHHHHHHHHHHHHHHHHHHhc--C----------ccc-
Confidence 34455555666666677777777765433321 233 45445666666665433221111111 0 011
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12958 253 GPRFDLCTVTFVIIYWSVISGLVWFIILTYILHIT 287 (294)
Q Consensus 253 ~~~d~~C~~~f~l~yff~maa~lWWvil~~~Wfla 287 (294)
.+.+..|.+.+++.+.+..+++.=-+.++++=|++
T Consensus 99 ~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~a 133 (409)
T PHA03235 99 SGSVAGCKFASLLYYASCTVGFATVALIAADRYRV 133 (409)
T ss_pred cCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11246899988887777766666555666554444
No 45
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=38.34 E-value=32 Score=26.49 Aligned_cols=22 Identities=18% Similarity=0.532 Sum_probs=20.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHH
Q psy12958 210 TSQVILYINICFFNTCIGWLLQ 231 (294)
Q Consensus 210 Per~Iifls~c~~~~Sl~~li~ 231 (294)
.||.|+++++.+++..+.||+.
T Consensus 68 ~D~~li~~~~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 68 TDRILIFFAFLFFLLVVLYILW 89 (92)
T ss_pred HhHHHHHHHHHHHHHHHHHHhh
Confidence 4999999999999999999873
No 46
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=38.22 E-value=22 Score=28.17 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCC
Q psy12958 174 ESMQNTIFVLAITCALFIVLSVLTLAINWEATSMY 208 (294)
Q Consensus 174 ~~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry 208 (294)
...-.|+++++++|.+.-++.|.=|.|.+.|+.+.
T Consensus 60 ~~~iili~lls~v~IlVily~IyYFVILRer~~~~ 94 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYAIYYFVILRERQKSI 94 (101)
T ss_pred cccchHHHHHHHHHHHHHHhhheEEEEEecccccc
Confidence 45577899999999999999999999998874433
No 47
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=35.87 E-value=1.7e+02 Score=24.89 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCCcchHHHHHHHHHHHHHH
Q psy12958 174 ESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIG 227 (294)
Q Consensus 174 ~~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~Per~Iifls~c~~~~Sl~ 227 (294)
..-..+..++.++-++..+|.++-|+=++.. .|| =|-.|+.+-+..++..+-
T Consensus 13 ~~~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~-tKy-RDL~II~~L~ll~l~giq 64 (149)
T PF11694_consen 13 SQNDYLRYILIIILLLVLIFFFIKYLRNRLD-TKY-RDLSIIALLLLLLLIGIQ 64 (149)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-chh-hhHHHHHHHHHHHHHHHH
Confidence 3445555566666666777777777766665 899 688777776666655543
No 48
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=32.08 E-value=60 Score=23.56 Aligned_cols=20 Identities=20% Similarity=0.384 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy12958 268 WSVISGLVWFIILTYILHIT 287 (294)
Q Consensus 268 ff~maa~lWWvil~~~Wfla 287 (294)
|..+..-+|-||+-++||+-
T Consensus 37 Ylt~MiGiWiVilFLtWf~l 56 (67)
T PF10854_consen 37 YLTIMIGIWIVILFLTWFLL 56 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45566678999999999974
No 49
>PF10582 Connexin_CCC: Gap junction channel protein cysteine-rich domain; InterPro: IPR019570 The connexins are a family of integral membrane proteins that oligomerise to form intercellular channels that are clustered at gap junctions. These channels are specialised sites of cell-cell contact that allow the passage of ions, intracellular metabolites and messenger molecules (with molecular weight less than 1-2kDa) from the cytoplasm of one cell to its opposing neighbours. They are found in almost all vertebrate cell types, and somewhat similar proteins have been cloned from plant species. Invertebrates utilise a different family of molecules, innexins, that share a similar predicted secondary structure to the vertebrate connexins, but have no sequence identity to them []. Vertebrate gap junction channels are thought to participate in diverse biological functions. For instance, in the heart they permit the rapid cell-cell transfer of action potentials, ensuring coordinated contraction of the cardiomyocytes. They are also responsible for neurotransmission at specialised 'electrical' synapses. In non-excitable tissues, such as the liver, they may allow metabolic cooperation between cells. In the brain, glial cells are extensively-coupled by gap junctions; this allows waves of intracellular Ca2+ to propagate through nervous tissue, and may contribute to their ability to spatially-buffer local changes in extracellular K+ concentration []. The connexin protein family is encoded by at least 13 genes in rodents, with many homologues cloned from other species. They show overlapping tissue expression patterns, most tissues expressing more than one connexin type. Their conductances, permeability to different molecules, phosphorylation and voltage-dependence of their gating, have been found to vary. Possible communication diversity is increased further by the fact that gap junctions may be formed by the association of different connexin isoforms from apposing cells. However, in vitro studies have shown that not all possible combinations of connexins produce active channels [, ]. Hydropathy analysis predicts that all cloned connexins share a common transmembrane (TM) topology. Each connexin is thought to contain 4 TM domains, with two extracellular and three cytoplasmic regions. This model has been validated for several of the family members by in vitro biochemical analysis. Both N- and C-termini are thought to face the cytoplasm, and the third TM domain has an amphipathic character, suggesting that it contributes to the lining of the formed-channel. Amino acid sequence identity between the isoforms is ~50-80%, with the TM domains being well conserved. Both extracellular loops contain characteristically conserved cysteine residues, which likely form intramolecular disulphide bonds. By contrast, the single putative intracellular loop (between TM domains 2 and 3) and the cytoplasmic C terminus are highly variable among the family members. Six connexins are thought to associate to form a hemi-channel, or connexon. Two connexons then interact (likely via the extracellular loops of their connexins) to form the complete gap junction channel. NH2-*** *** *************-COOH ** ** ** ** ** ** ** ** Cytoplasmic ---**----**-----**----**---------------- ** ** ** ** Membrane ** ** ** ** ---**----**-----**----**---------------- ** ** ** ** Extracellular ** ** ** ** ** ** Two sets of nomenclature have been used to identify the connexins. The first, and most commonly used, classifies the connexin molecules according to molecular weight, such as connexin43 (abbreviated to Cx43), indicating a connexin of molecular weight close to 43kDa. However, studies have revealed cases where clear functional homologues exist across species that have quite different molecular masses; therefore, an alternative nomenclature was proposed based on evolutionary considerations, which divides the family into two major subclasses, alpha and beta, each with a number of members []. Due to their ubiquity and overlapping tissue distributions, it has proved difficult to elucidate the functions of individual connexin isoforms. To circumvent this problem, particular connexin-encoding genes have been subjected to targeted-disruption in mice, and the phenotype of the resulting animals investigated. Around half the connexin isoforms have been investigated in this manner []. Further insight into the functional roles of connexins has come from the discovery that a number of human diseases are caused by mutations in connexin genes. For instance, mutations in Cx32 give rise to a form of inherited peripheral neuropathy called X-linked dominant Charcot-Marie-Tooth disease []. Similarly, mutations in Cx26 are responsible for both autosomal recessive and dominant forms of nonsyndromic deafness, a disorder characterised by hearing loss, with no apparent effects on other organ systems. This entry represents the cysteine rich domain of the connexins.; PDB: 2ZW3_F.
Probab=29.83 E-value=1.8e+02 Score=21.43 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12958 169 SKEEHESMQNTIFVLAITCALFIVLSVL 196 (294)
Q Consensus 169 t~~e~~~~~~~~~v~s~icf~~t~f~ll 196 (294)
.+.||+..-..|.+.|.+|++.++.-++
T Consensus 38 RPtEKtIfl~fM~~~s~vsi~L~l~El~ 65 (67)
T PF10582_consen 38 RPTEKTIFLIFMFAVSCVSILLNLAELF 65 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888888999999999988876554
No 50
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=28.07 E-value=1.1e+02 Score=28.16 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCC-CC-CCceeecCCCce-e---e-cCC-CCCchhHHHHHHH
Q psy12958 212 QVILYINICFFNTCIGWLLQFTPG-ID-KEDIVCQRDGTL-R---V-PGP-RFDLCTVTFVIIY 267 (294)
Q Consensus 212 r~Iifls~c~~~~Sl~~li~~~~g-~~-~~~i~C~~~~~~-~---~-~~~-~d~~C~~~f~l~y 267 (294)
|..+|+.--+.+.-.-.+-|.+.. ++ +..+.|-+.|.. . + +.+ .++.|.-+|+++.
T Consensus 87 r~~if~~Yi~~is~~~dI~Rvf~YHGAEHK~I~~yE~g~~Ltvenvrk~sr~HpRCGTsFl~~v 150 (236)
T PF07136_consen 87 RLAIFLGYIWLISRMKDIKRVFQYHGAEHKVINCYEAGEELTVENVRKYSRLHPRCGTSFLLIV 150 (236)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcchhhhhHHhhcCCCCCCHHHHHhcCCcCCCcchhHHHHH
Confidence 334444433333333344444322 12 457788765531 1 1 112 2378997766433
No 51
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=25.67 E-value=2e+02 Score=24.31 Aligned_cols=41 Identities=7% Similarity=0.110 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCcCCCCcc-h-HHHHHHHHHHHHHHH
Q psy12958 185 ITCALFIVLSVLTLAINWEATSMYFTSQ-V-ILYINICFFNTCIGW 228 (294)
Q Consensus 185 ~icf~~t~f~llTF~i~~~r~~ry~Per-~-Iifls~c~~~~Sl~~ 228 (294)
.|++++.+++.+.|..+.+ +.| |+- + ++...+.|++.|...
T Consensus 31 ~lg~~a~~iA~~a~~~d~~--~~f-~~s~~~~~~~v~~YfiLs~il 73 (162)
T PF06703_consen 31 ALGYLAVIIAGFAFFYDYK--YPF-PESKPYLIICVILYFILSGIL 73 (162)
T ss_pred HHHHHHHHHHHHHHHhhhc--CCC-CccHHHHHHHHHHHHHHHHHH
Confidence 4566667777788888875 577 664 4 355666666666544
No 52
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=23.75 E-value=3.8e+02 Score=26.71 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhccCC
Q psy12958 176 MQNTIFVLAITCALFIVLSVL----TLAINWE 203 (294)
Q Consensus 176 ~~~~~~v~s~icf~~t~f~ll----TF~i~~~ 203 (294)
.=.+.+.++.+.++.+++.++ ++...++
T Consensus 38 Sv~~~a~iaavwlil~ll~ll~~~~~~CCcr~ 69 (418)
T cd07912 38 SLLILASIPAACLILSLLFLLVYLITRCCDRK 69 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 344455566666655555555 5555555
No 53
>KOG4289|consensus
Probab=23.43 E-value=4.8e+02 Score=30.79 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=27.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12958 257 DLCTVTFVIIYWSVISGLVWFIILTYILHIT 287 (294)
Q Consensus 257 ~~C~~~f~l~yff~maa~lWWvil~~~Wfla 287 (294)
..|+++.++++|+.|+...|-.+-.+--|.+
T Consensus 2224 ~~CtvvailLhf~~~stFaWlfl~gLhlYRm 2254 (2531)
T KOG4289|consen 2224 FYCTVVAILLHFTYLSTFAWLFLEGLHLYRM 2254 (2531)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5799999999999999999999988876654
No 54
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=23.42 E-value=4.7e+02 Score=22.35 Aligned_cols=11 Identities=36% Similarity=0.863 Sum_probs=6.5
Q ss_pred HHHHHHHHHHH
Q psy12958 271 ISGLVWFIILT 281 (294)
Q Consensus 271 maa~lWWvil~ 281 (294)
+..-.||+.|.
T Consensus 112 ~s~~~w~l~Lv 122 (170)
T PF05620_consen 112 ISNKFWWLYLV 122 (170)
T ss_pred HHHHHHHHHHH
Confidence 35556776654
No 55
>COG5454 Predicted secreted protein [Function unknown]
Probab=23.14 E-value=74 Score=24.54 Aligned_cols=19 Identities=21% Similarity=0.688 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12958 265 IIYWSVISGLVWFIILTYI 283 (294)
Q Consensus 265 l~yff~maa~lWWvil~~~ 283 (294)
++-+|++-.++||++|-..
T Consensus 3 ~~s~fAiyfiiWWtvLFav 21 (89)
T COG5454 3 LFSWFAIYFIIWWTVLFAV 21 (89)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3456778889999998654
No 56
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=22.46 E-value=1.5e+02 Score=19.49 Aligned_cols=23 Identities=22% Similarity=0.668 Sum_probs=17.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q psy12958 257 DLCTVTFVIIYWSVISGLVWFII 279 (294)
Q Consensus 257 ~~C~~~f~l~yff~maa~lWWvi 279 (294)
-.|.+.|+++---.|-.+.|++.
T Consensus 10 ylc~l~~llflv~imliif~f~l 32 (43)
T PF11395_consen 10 YLCFLSFLLFLVIIMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888888888888877777763
No 57
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=22.30 E-value=4e+02 Score=21.05 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q psy12958 177 QNTIFVLAITCALFIVLSVLTLAI 200 (294)
Q Consensus 177 ~~~~~v~s~icf~~t~f~llTF~i 200 (294)
-.+..+.++++++.+++.++.+..
T Consensus 42 ~~~~~~v~~~~~~~~~~~l~~~~~ 65 (144)
T PF01284_consen 42 CGFALFVAVLSFLYTLIFLLLYLF 65 (144)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888774
Done!