Query psy12958
Match_columns 294
No_of_seqs 149 out of 605
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 15:29:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ijx_A Secreted frizzled-relat 100.0 1.7E-29 5.7E-34 208.1 4.7 105 13-120 2-112 (127)
2 1ijy_A Frizzled homolog 8; WNT 100.0 2.4E-29 8.1E-34 208.0 5.0 107 12-121 6-117 (130)
3 3hkl_A Muscle, skeletal recept 97.7 4.2E-05 1.4E-09 66.2 5.6 86 12-99 16-107 (197)
4 2z73_A Rhodopsin; visual pigme 89.7 3.5 0.00012 38.1 12.2 105 168-289 29-138 (448)
5 3odu_A C-X-C chemokine recepto 81.4 8 0.00027 35.9 10.0 113 161-289 36-149 (502)
6 4dkl_A MU-type opioid receptor 81.1 9.2 0.00031 34.9 10.2 100 174-288 18-118 (464)
7 1u19_A Rhodopsin; G protein-co 76.9 19 0.00066 31.2 10.6 108 168-289 33-141 (349)
8 3rze_A Histamine H1 receptor, 75.0 14 0.00049 33.5 9.5 100 177-289 12-111 (452)
9 3uon_A Human M2 muscarinic ace 74.2 8.7 0.0003 35.2 7.8 99 173-289 23-126 (467)
10 4ea3_A Fusion protein of nocic 66.7 23 0.00077 32.5 8.9 97 175-289 127-227 (434)
11 2ks9_A Substance-P receptor; w 66.3 40 0.0014 29.6 10.2 95 177-289 36-135 (364)
12 2rh1_A Beta-2-adrenergic recep 64.2 26 0.00089 32.9 8.9 98 175-289 42-143 (500)
13 4amj_A Beta-1 adrenergic recep 64.0 8.1 0.00028 33.0 4.9 99 172-288 10-113 (315)
14 3v2y_A Sphingosine 1-phosphate 63.8 58 0.002 30.7 11.4 101 174-289 64-165 (520)
15 3eml_A Human adenosine A2A rec 61.5 28 0.00097 31.8 8.5 99 175-289 23-122 (488)
16 3vw7_A Proteinase-activated re 60.7 28 0.00097 31.9 8.4 98 175-289 22-123 (484)
17 3pbl_A D(3) dopamine receptor, 57.4 37 0.0012 31.1 8.5 94 178-288 43-141 (481)
18 2lnl_A C-X-C chemokine recepto 54.9 97 0.0033 26.2 11.3 97 178-289 16-112 (296)
19 4eiy_A Adenosine receptor A2A/ 46.4 53 0.0018 29.6 7.6 97 176-288 34-131 (447)
20 3sn6_R Lysozyme, beta-2 adrene 43.6 38 0.0013 31.8 6.3 96 175-288 184-284 (514)
21 4grv_A Neurotensin receptor ty 28.4 2.6E+02 0.0089 26.0 9.5 33 257-289 108-140 (510)
22 4g5a_A Uncharacterized protein 24.4 20 0.00068 26.4 0.5 15 13-29 39-53 (99)
No 1
>1ijx_A Secreted frizzled-related sequence protein 3; WNT receptor, frizzled protein structure, cysteine-rich, SIG protein; 1.90A {Mus musculus} SCOP: a.141.1.1
Probab=99.95 E-value=1.7e-29 Score=208.14 Aligned_cols=105 Identities=21% Similarity=0.315 Sum_probs=96.4
Q ss_pred eeeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCCC---CCCCCC
Q psy12958 13 KVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDN---VVSVPS 89 (294)
Q Consensus 13 ~~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~~---~~i~PC 89 (294)
...|+||.++| |+|++||.|.+|| ++||+||+||+.+++.|.+|++. +||+++++||||+|+|+|.++ ++++||
T Consensus 2 ~~~C~pi~~~~-C~~l~Yn~T~~PN-~lgh~~q~ea~~~~~~f~~Lv~~-~C~~~l~~FlCs~~~P~C~~~~~~~~i~PC 78 (127)
T 1ijx_A 2 SAACEPVRIPL-CKSLPWEMTKMPN-HLHHSTQANAILAMEQFEGLLGT-HCSPDLLFFLCAMYAPICTIDFQHEPIKPC 78 (127)
T ss_dssp -CCCEECCCGG-GGGSSCCEECSSC-TTCCSSHHHHHHHHHTTHHHHTT-TCCTTHHHHHHHHHSCBCBSSCSSSCCCBC
T ss_pred CCccccCChhH-hCCCCCCeeECCC-cCCCcCHHHHHHHHHHHHHHHcc-CcCHHHHhhhhhccCCcccCCCCCcccCcc
Confidence 35799999999 5999999998887 58999999999999999999998 999999999999999999863 789999
Q ss_pred HHHHhhhcCCcccccc---ccCCCCCCCCCCCCC
Q psy12958 90 QEVCKLLSGPCRIVAQ---ELSPEFNCQNGTKIS 120 (294)
Q Consensus 90 r~lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~ 120 (294)
|++||++|++|+++|. +.||+.|+|++||..
T Consensus 79 RslCe~vr~~C~~~~~~~g~~WP~~l~C~~fP~~ 112 (127)
T 1ijx_A 79 KSVCERARQGCEPILIKYRHSWPESLACDELPVY 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCGGGCGGGCCCT
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcCccccCCCC
Confidence 9999999999999984 789999999998764
No 2
>1ijy_A Frizzled homolog 8; WNT receptor, frizzled protein structure, cysteine-rich, signaling protein; 1.35A {Mus musculus} SCOP: a.141.1.1
Probab=99.95 E-value=2.4e-29 Score=208.01 Aligned_cols=107 Identities=19% Similarity=0.268 Sum_probs=98.3
Q ss_pred eeeeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHHhhhhhhcCCCCcchhhHHhhhhccCcCCCC--CCCCCCC
Q psy12958 12 TKVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKCWAVIQSFLCALYMPKCED--NVVSVPS 89 (294)
Q Consensus 12 ~~~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l~~~~~L~~~~~C~~~l~~fLCs~~~P~C~~--~~~i~PC 89 (294)
....|+||.++| |+|++||.|.+||. +||++|+||+.+++.|.+|++. +||+++++||||+|+|+|++ +++++||
T Consensus 6 ~~~~C~pI~~~~-C~~l~Yn~T~~PN~-l~h~~q~ea~~~l~~f~~L~~~-~C~~~l~~FlCs~~~P~C~~~~~~~~~PC 82 (130)
T 1ijy_A 6 KELACQEITVPL-CKGIGYEYTYMPNQ-FNHDTQDEAGLEVHQFWPLVEI-QCSPDLKFFLCSMYTPICLEDYKKPLPPC 82 (130)
T ss_dssp -CCCCEECCCGG-GTTSSCCEECSSCT-TCCCSHHHHHHHHGGGHHHHHH-TSCTTHHHHHHHHHSCBCCSSCCSCCCBC
T ss_pred CCCeeeeCChhH-hCCCCCCeeECCCc-CCCcCHHHHHHHHHHHHHHhcc-CcCHHHHHHHHHhhCCcccCCCCcccCcc
Confidence 456899999999 59999999988875 8999999999999999999998 99999999999999999987 6899999
Q ss_pred HHHHhhhcCCcccccc---ccCCCCCCCCCCCCCC
Q psy12958 90 QEVCKLLSGPCRIVAQ---ELSPEFNCQNGTKISS 121 (294)
Q Consensus 90 r~lCe~v~~~C~~~~~---~~WP~~l~C~~~P~~p 121 (294)
|++||+++++|+++|. +.||+.|+|++||...
T Consensus 83 RslCe~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~ 117 (130)
T 1ijy_A 83 RSVCERAKAGCAPLMRQYGFAWPDRMRCDRLPEQG 117 (130)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCGGGCGGGSCCSS
T ss_pred HHHHHHHhcchHHHHHhcCCCCCCcCCcccCCCCC
Confidence 9999999999999985 6899999999987653
No 3
>3hkl_A Muscle, skeletal receptor tyrosine protein kinase; MUSK, receptor tyrosine kinase, frizzled CRD, ATP-binding, D bond, glycoprotein; HET: NAG; 2.10A {Rattus norvegicus}
Probab=97.69 E-value=4.2e-05 Score=66.17 Aligned_cols=86 Identities=21% Similarity=0.330 Sum_probs=66.7
Q ss_pred eeeeeeeeEeccccccccCCCccccCCcCCCCCHHHHHHHH--hhhhhhcCC-CCcchhhHHhhhhccCcCCCCC---CC
Q psy12958 12 TKVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERL--KRWQGLKYI-PKCWAVIQSFLCALYMPKCEDN---VV 85 (294)
Q Consensus 12 ~~~~~~~~~~~~~~~~i~~~~s~~~n~~lgh~tq~ea~~~l--~~~~~L~~~-~~C~~~l~~fLCs~~~P~C~~~---~~ 85 (294)
.|++|+|=+=+.|.+.|..+.+.+.|..+ .+|++++.++ ..|..|..+ ..|.+.+..+||...||.|.++ .+
T Consensus 16 ~~GyC~~YrG~vC~~yL~g~~~Vf~nsS~--~dp~~~~E~l~~aaw~el~~lS~~Cr~aAe~lLC~yaFP~Cd~~~gP~P 93 (197)
T 3hkl_A 16 SKGYCAQYRGEVCDAVLVKDSLVFFNTSY--PDPEEAQELLIHTAWNELKAVSPLCRPAAEALLCNHLFQECSPGVLPTP 93 (197)
T ss_dssp -CEEEECCCCSSSTTTSCTTCCEEEETTS--SSHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHTCBBCSSSSCCB
T ss_pred CCcccccccchHHHHHhCCCceEEEecCc--CCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhCCCCCCCCCCCC
Confidence 58999999999987777677788998543 6788887766 467776433 4899999999999999999752 23
Q ss_pred CCCCHHHHhhhcCC
Q psy12958 86 SVPSQEVCKLLSGP 99 (294)
Q Consensus 86 i~PCr~lCe~v~~~ 99 (294)
.+-||+-|+.++..
T Consensus 94 ~pLCREdC~alk~~ 107 (197)
T 3hkl_A 94 MPICREYCLAVKEL 107 (197)
T ss_dssp CCBCHHHHHHHHHT
T ss_pred cchhHHHHHHHHHH
Confidence 34499999998654
No 4
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=89.75 E-value=3.5 Score=38.11 Aligned_cols=105 Identities=10% Similarity=-0.085 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCCcchHHHHHHHHHHHHHHH-----HHHhcCCCCCCcee
Q psy12958 168 YSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGW-----LLQFTPGIDKEDIV 242 (294)
Q Consensus 168 ft~~e~~~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~Per~Iifls~c~~~~Sl~~-----li~~~~g~~~~~i~ 242 (294)
+.......+.....+++++.++..++.++++.-.++++... ..-|+-+|++=+++++.. +...+.+ .
T Consensus 29 ~~~~~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~--~~ll~~LaiaDll~~~~~~~p~~~~~~~~~--~---- 100 (448)
T 2z73_A 29 VPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPA--NMFIINLAFSDFTFSLVNGFPLMTISCFLK--K---- 100 (448)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTT--HHHHHHHHHHHHHHHHHHSTTHHHHHHHTT--S----
T ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCcc--chHHHHHHHHHHHHHHHHhccHHHHHHhcC--C----
Confidence 34455556677777888888888888888776554432222 456677787777776643 1122111 0
Q ss_pred ecCCCceeecCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12958 243 CQRDGTLRVPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQ 289 (294)
Q Consensus 243 C~~~~~~~~~~~~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa~ 289 (294)
.. ..+..|.+..++.+++..+++++.++++++=|++..
T Consensus 101 ------~~---~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~ 138 (448)
T 2z73_A 101 ------WI---FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIG 138 (448)
T ss_dssp ------CC---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------cc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00 012579999999999999999999999998888764
No 5
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=81.43 E-value=8 Score=35.87 Aligned_cols=113 Identities=10% Similarity=0.026 Sum_probs=65.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCCc-chHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy12958 161 LQCSDPLYSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTS-QVILYINICFFNTCIGWLLQFTPGIDKE 239 (294)
Q Consensus 161 ~pC~~~~ft~~e~~~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~Pe-r~Iifls~c~~~~Sl~~li~~~~g~~~~ 239 (294)
.+|+..-...-+...+.....+++++.++..++.++.+.-.++. |- |. .-|+-+|++=+++.+...+....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l--~~-~~~~~l~~La~~Dll~~~~~p~~~~~----- 107 (502)
T 3odu_A 36 EPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKL--RS-MTDKYRLHLSVADLLFVITLPFWAVD----- 107 (502)
T ss_dssp -CCCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCS--CC-HHHHHHHHHHHHHHHHHTTHHHHHHH-----
T ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CC-HHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 35655444555556666677777777778887777665544332 22 22 22344455444443221111100
Q ss_pred ceeecCCCceeecCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12958 240 DIVCQRDGTLRVPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQ 289 (294)
Q Consensus 240 ~i~C~~~~~~~~~~~~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa~ 289 (294)
.+ . .... .+..|.+..++.+++..++++--+.++++=|++..
T Consensus 108 ~~----~-~~~~---~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~ 149 (502)
T 3odu_A 108 AV----A-NWYF---GNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIV 149 (502)
T ss_dssp HH----T-CCCS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh----c-CCcC---CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 00 0 0000 12469999999999999999999999998888753
No 6
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=81.09 E-value=9.2 Score=34.90 Aligned_cols=100 Identities=10% Similarity=0.070 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCC-cchHHHHHHHHHHHHHHHHHHhcCCCCCCceeecCCCceeec
Q psy12958 174 ESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFT-SQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVP 252 (294)
Q Consensus 174 ~~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~P-er~Iifls~c~~~~Sl~~li~~~~g~~~~~i~C~~~~~~~~~ 252 (294)
-..-....+++++.++..++.++++.-+++. +- | +.-|+-+|++=+++++...+.... .+. +..
T Consensus 18 ~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~--~~-~~~~~l~~La~~Dll~~~~~p~~~~~-----~~~----~~~--- 82 (464)
T 4dkl_A 18 ITIMALYSIVCVVGLFGNFLVMYVIVRYTKM--KT-ATNIYIFNLALADALATSTLPFQSVN-----YLM----GTW--- 82 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTT--CS-HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH----SSC---
T ss_pred HHHHHHHHHHHHHHHHHHHHeehhhhhcccc--CC-HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHh----CCc---
Confidence 3445556667777778888887777655442 22 2 334566677776666553221110 000 000
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12958 253 GPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITL 288 (294)
Q Consensus 253 ~~~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa 288 (294)
...+..|.+..++.+++..++++.-+.++++=|++.
T Consensus 83 ~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI 118 (464)
T 4dkl_A 83 PFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAV 118 (464)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 012368999999999999999999999999888775
No 7
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=76.94 E-value=19 Score=31.24 Aligned_cols=108 Identities=8% Similarity=0.004 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCC-cchHHHHHHHHHHHHHHHHHHhcCCCCCCceeecCC
Q psy12958 168 YSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFT-SQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRD 246 (294)
Q Consensus 168 ft~~e~~~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~P-er~Iifls~c~~~~Sl~~li~~~~g~~~~~i~C~~~ 246 (294)
-++.+.........+.+++.++..++.++++.-.+++ |- | +.-++-+|++=+++++..+...+.. .+.
T Consensus 33 ~~~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~--~~-~~~~ll~~Lai~Dll~~~~~~~~~~~~----~~~---- 101 (349)
T 1u19_A 33 AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKL--RT-PLNYILLNLAVADLFMVFGGFTTTLYT----SLH---- 101 (349)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTC--CS-HHHHHHHHHHHHHHHHHHHTHHHHHHH----HHH----
T ss_pred cchHHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhh--cC-chhHHHHHHHHHHHHHHHhcchHHHHH----Hhc----
Confidence 3455555666777788888888888888877655443 22 2 3445667777766665433221110 000
Q ss_pred CceeecCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12958 247 GTLRVPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQ 289 (294)
Q Consensus 247 ~~~~~~~~~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa~ 289 (294)
+.. ...+..|.+..++.+++..++..--+.++++=|++..
T Consensus 102 ~~~---~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~ 141 (349)
T 1u19_A 102 GYF---VFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVC 141 (349)
T ss_dssp TSC---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Cee---eCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 000 0112579999999999999999888889988887753
No 8
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=75.02 E-value=14 Score=33.51 Aligned_cols=100 Identities=8% Similarity=-0.011 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCceeecCCCceeecCCCC
Q psy12958 177 QNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVPGPRF 256 (294)
Q Consensus 177 ~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~Per~Iifls~c~~~~Sl~~li~~~~g~~~~~i~C~~~~~~~~~~~~d 256 (294)
-....+++++.++..++.++++.-+++. |-..+.-|+-+|++=+++++..+...+.. .+. +... ..+
T Consensus 12 ~~~~~~~~~~gi~gN~~vi~~~~~~~~~--~~~~~~~l~~La~~Dll~~~~~~p~~~~~----~~~----~~~~---~~~ 78 (452)
T 3rze_A 12 VVVLSTICLVTVGLNLLVLYAVRSERKL--HTVGNLYIVSLSVADLIVGAVVMPMNILY----LLM----SKWS---LGR 78 (452)
T ss_dssp GTHHHHHHHHHHHHHHHHHHHHHHCSTT--CCGGGHHHHHHHHHHHHHHHTHHHHHHHH----HHS----SSCS---SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc--CChhHHHHHHHHHHHHHHHHHHHHHHHHH----HHc----CCcc---CCc
Confidence 3455667777778888888777655543 22023456667776666654332211110 000 0000 112
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12958 257 DLCTVTFVIIYWSVISGLVWFIILTYILHITLQ 289 (294)
Q Consensus 257 ~~C~~~f~l~yff~maa~lWWvil~~~Wflaa~ 289 (294)
..|.+..++.+++..++++.-+.++++=|++..
T Consensus 79 ~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~ 111 (452)
T 3rze_A 79 PLCLFWLSMDYVASTASIFSVFILCIDRYRSVQ 111 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 579999999999999999999999998888764
No 9
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=74.15 E-value=8.7 Score=35.16 Aligned_cols=99 Identities=7% Similarity=0.015 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCC-cchHHHHHHHHHHHHHHHHH----HhcCCCCCCceeecCCC
Q psy12958 173 HESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFT-SQVILYINICFFNTCIGWLL----QFTPGIDKEDIVCQRDG 247 (294)
Q Consensus 173 ~~~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~P-er~Iifls~c~~~~Sl~~li----~~~~g~~~~~i~C~~~~ 247 (294)
....-....+++++.++..++.++++...++. +- | +.-|+-+|++=+++++..+. ..+.+ .
T Consensus 23 ~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~--~~-~~~~~l~~La~aDll~~~~~~p~~~~~~~~~--~--------- 88 (467)
T 3uon_A 23 VVFIVLVAGSLSLVTIIGNILVMVSIKVNRHL--QT-VNNYFLFSLACADLIIGVFSMNLYTLYTVIG--Y--------- 88 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG--CS-HHHHHHHHHHHHHHHHHHTHHHHHHHHHHSS--S---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeeeecCcc--Cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C---------
Confidence 34455566667777777888777776654432 22 2 23456666666665443322 11111 0
Q ss_pred ceeecCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12958 248 TLRVPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQ 289 (294)
Q Consensus 248 ~~~~~~~~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa~ 289 (294)
. ...+..|.+.+++.+++..++++.-+.++++=|++..
T Consensus 89 -~---~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~ 126 (467)
T 3uon_A 89 -W---PLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVT 126 (467)
T ss_dssp -C---CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -c---cCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 0112579999999999999999999999998888763
No 10
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=66.67 E-value=23 Score=32.52 Aligned_cols=97 Identities=8% Similarity=0.048 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCC-cchHHHHHHHHHHHHHHHHH---HhcCCCCCCceeecCCCcee
Q psy12958 175 SMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFT-SQVILYINICFFNTCIGWLL---QFTPGIDKEDIVCQRDGTLR 250 (294)
Q Consensus 175 ~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~P-er~Iifls~c~~~~Sl~~li---~~~~g~~~~~i~C~~~~~~~ 250 (294)
.......++.+++++..++.++++..++++ |- | ..-++-+|++=+++++.... ..+.| .
T Consensus 127 ~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l--~~-~~~~ll~~LAvsDll~~~~~p~~~~~~~~~--~------------ 189 (434)
T 4ea3_A 127 TIVGLYLAVCVGGLLGNCLVMYVILRHTKM--KT-ATNIYIFNLALADTLVLLTLPFQGTDILLG--F------------ 189 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSC--CC-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHT--S------------
T ss_pred HHHHHHHHHHHHHHHHHHHeeeeeeecCcc--Cc-hhHHHHHHHHHHHHHHHHHhHHHHHHHHhc--C------------
Confidence 344555666777777787777776655443 22 2 22345555555554332211 11111 0
Q ss_pred ecCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12958 251 VPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQ 289 (294)
Q Consensus 251 ~~~~~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa~ 289 (294)
....+..|.+..++.+++..++++.-++++++=|++..
T Consensus 190 -~~~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~ 227 (434)
T 4ea3_A 190 -WPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAIC 227 (434)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhEEE
Confidence 00112579999999999999999888888888777653
No 11
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=66.27 E-value=40 Score=29.56 Aligned_cols=95 Identities=5% Similarity=-0.030 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCC-cchHHHHHHHHHHHHHHHHH----HhcCCCCCCceeecCCCceee
Q psy12958 177 QNTIFVLAITCALFIVLSVLTLAINWEATSMYFT-SQVILYINICFFNTCIGWLL----QFTPGIDKEDIVCQRDGTLRV 251 (294)
Q Consensus 177 ~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~P-er~Iifls~c~~~~Sl~~li----~~~~g~~~~~i~C~~~~~~~~ 251 (294)
-....++++++++..++.++++.-.++. |- | +.-++-+|++=+++++..+. ....| + .
T Consensus 36 ~~~~~~i~~~gi~gN~lvi~vi~~~~~l--~~-~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~--~----------~-- 98 (364)
T 2ks9_A 36 AAAYTVIVVTSVVGNVVVMWIILAHKRM--RT-VTNYFLVNLAFAEASMAAFNTVVNFTYAVHN--E----------W-- 98 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTC--CC-HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--S----------C--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc--cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--C----------c--
Confidence 4455566777777777777776655442 32 2 33345555555554432221 11111 0 0
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12958 252 PGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQ 289 (294)
Q Consensus 252 ~~~~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa~ 289 (294)
...+..|.+.+++.+++..++...-+.++++=|++..
T Consensus 99 -~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~ 135 (364)
T 2ks9_A 99 -YYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAII 135 (364)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0112579999999999999998888888888777653
No 12
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=64.17 E-value=26 Score=32.90 Aligned_cols=98 Identities=9% Similarity=-0.033 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCCcchHHHHHHHHHHHHHHHHH----HhcCCCCCCceeecCCCcee
Q psy12958 175 SMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLL----QFTPGIDKEDIVCQRDGTLR 250 (294)
Q Consensus 175 ~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~Per~Iifls~c~~~~Sl~~li----~~~~g~~~~~i~C~~~~~~~ 250 (294)
.+-....++.++.++..++.++++...++. |--.+.-|+-+|++=+++.+..+. ..+.+ . ..
T Consensus 42 ~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l--~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~--~----------w~ 107 (500)
T 2rh1_A 42 GMGIVMSLIVLAIVFGNVLVITAIAKFERL--QTVTNYFITSLACADLVMGLAVVPFGAAHILMK--M----------WT 107 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGG--CSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT--S----------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcc--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--C----------Cc
Confidence 344555666677777777777777654432 220133455666665555543221 11111 0 00
Q ss_pred ecCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12958 251 VPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQ 289 (294)
Q Consensus 251 ~~~~~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa~ 289 (294)
..+..|.+.+++.+++..++++-.++++++=|++..
T Consensus 108 ---~~~~~C~~~~~~~~~~~~~Si~~l~~isidRy~aI~ 143 (500)
T 2rh1_A 108 ---FGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAIT 143 (500)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 012579999999999999999888889988887753
No 13
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=63.97 E-value=8.1 Score=33.04 Aligned_cols=99 Identities=9% Similarity=-0.033 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCC-cchHHHHHHHHHHHHHHHH----HHhcCCCCCCceeecCC
Q psy12958 172 EHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFT-SQVILYINICFFNTCIGWL----LQFTPGIDKEDIVCQRD 246 (294)
Q Consensus 172 e~~~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~P-er~Iifls~c~~~~Sl~~l----i~~~~g~~~~~i~C~~~ 246 (294)
..........+.++++++.+++.++++.-++++ |- | +.-++-+|++=++.++..+ .....|
T Consensus 10 ~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~--~~-~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~----------- 75 (315)
T 4amj_A 10 WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRL--QT-LTNLFITSLACADLVVGLLVVPFGATLVVRG----------- 75 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG--CC-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHS-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhh--cc-hHHHHHHHHHHHHHHHHHHhccHHHHHHhcC-----------
Confidence 334455666677777778888877776544432 22 1 1223333333333221100 000001
Q ss_pred CceeecCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12958 247 GTLRVPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITL 288 (294)
Q Consensus 247 ~~~~~~~~~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa 288 (294)
.. ...+..|.+..++.+++..++...-+.++++=|++.
T Consensus 76 -~~---~~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI 113 (315)
T 4amj_A 76 -TW---LWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAI 113 (315)
T ss_dssp -SC---CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -Ce---eccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00 011257999999999999999988888888877765
No 14
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=63.82 E-value=58 Score=30.69 Aligned_cols=101 Identities=6% Similarity=-0.050 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCC-cchHHHHHHHHHHHHHHHHHHhcCCCCCCceeecCCCceeec
Q psy12958 174 ESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFT-SQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVP 252 (294)
Q Consensus 174 ~~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~P-er~Iifls~c~~~~Sl~~li~~~~g~~~~~i~C~~~~~~~~~ 252 (294)
........++.++.++..++.++++.-+++. |- | ..-|+=||++=+++++..+...+.. . .+ ..
T Consensus 64 ~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~l--r~-~~~~~l~nLA~aDll~~~~~~p~~~~~--------~-~~---~~ 128 (520)
T 3v2y_A 64 KLTSVVFILICCFIILENIFVLLTIWKTKKF--HR-PMYYFIGNLALSDLLAGVAYTANLLLS--------G-AT---TY 128 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTT--CS-HHHHHHHHHHHHHHHHHHHHHHHHHHS--------G-GG---GT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccc--cC-hHHHHHHHHHHHHHHHHHHHHHHHHHc--------c-cc---ce
Confidence 4555666667777777777777776655442 22 2 2234556666666666554332211 0 00 00
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12958 253 GPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQ 289 (294)
Q Consensus 253 ~~~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa~ 289 (294)
...+..|.+..++.+++..++++=.+.++++=|++..
T Consensus 129 ~~~~~~c~~~~~~~~~~~~~S~~~l~~isidRy~aI~ 165 (520)
T 3v2y_A 129 KLTPAQWFLREGSMFVALSASVFSLLAIAIERYITML 165 (520)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeCccccchHHHHHHHHHHHHHHHHHHHHHHHhhEEe
Confidence 0112579998889999999998888888888887753
No 15
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=61.46 E-value=28 Score=31.75 Aligned_cols=99 Identities=8% Similarity=-0.008 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCC-cchHHHHHHHHHHHHHHHHHHhcCCCCCCceeecCCCceeecC
Q psy12958 175 SMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFT-SQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVPG 253 (294)
Q Consensus 175 ~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~P-er~Iifls~c~~~~Sl~~li~~~~g~~~~~i~C~~~~~~~~~~ 253 (294)
..-....+++++.++..++.++++...++. |- | ..-|+-+|++=+++++..+...+.- .. ....
T Consensus 23 ~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~--~~-~~~~~l~~La~aDll~~~~~~p~~~~~--~~--------~~~~-- 87 (488)
T 3eml_A 23 VYITVELAIAVLAILGNVLVCWAVWLNSNL--QN-VTNYFVVSLAAADIAVGVLAIPFAITI--ST--------GFCA-- 87 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGG--CS-SHHHHHHHHHHHHHHHHHTHHHHHHHH--TT--------CCEE--
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheeecccc--CC-hHHHHHHHHHHHHHHHHHHHHHHHHHH--hc--------cccc--
Confidence 334455566777777787777777655442 22 2 2344556666666544333221111 00 0001
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12958 254 PRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQ 289 (294)
Q Consensus 254 ~~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa~ 289 (294)
.+..|.+.+++.+++..++++--++++++=|++..
T Consensus 88 -~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~ 122 (488)
T 3eml_A 88 -ACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIR 122 (488)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEe
Confidence 12579999999999999999888888888777653
No 16
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=60.70 E-value=28 Score=31.86 Aligned_cols=98 Identities=5% Similarity=0.100 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCC-cchHHHHHHHHHHHHHHHHHHh---cCCCCCCceeecCCCcee
Q psy12958 175 SMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFT-SQVILYINICFFNTCIGWLLQF---TPGIDKEDIVCQRDGTLR 250 (294)
Q Consensus 175 ~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~P-er~Iifls~c~~~~Sl~~li~~---~~g~~~~~i~C~~~~~~~ 250 (294)
..-....++.++.++..++.++++..+++. +- | +.-|+-+|++=+++.+...... +.+ + ...
T Consensus 22 ~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l--~~-~~~~~l~~La~aDll~~~~~~~~~~~~~~~---~--------~~~ 87 (484)
T 3vw7_A 22 FVPSVYTGVFVVSLPLNIMAIVVFILKMKV--KK-PAVVYMLHLATADVLFVSVLPFKISYYFSG---S--------DWQ 87 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGG--CC-HHHHHHHHHHHHHHHHHTTHHHHHHHHHTT---S--------CCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--------Ccc
Confidence 445556666777777777777776655432 22 2 2234445555444443222111 111 0 000
Q ss_pred ecCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12958 251 VPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQ 289 (294)
Q Consensus 251 ~~~~~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa~ 289 (294)
..+..|.+..++.+++..++++-.+.++++=|++..
T Consensus 88 ---~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~ 123 (484)
T 3vw7_A 88 ---FGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVV 123 (484)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHheEEE
Confidence 112689999999999999999888888888777753
No 17
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=57.37 E-value=37 Score=31.06 Aligned_cols=94 Identities=6% Similarity=-0.052 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCC-cchHHHHHHHHHHHHHHHHHHh----cCCCCCCceeecCCCceeec
Q psy12958 178 NTIFVLAITCALFIVLSVLTLAINWEATSMYFT-SQVILYINICFFNTCIGWLLQF----TPGIDKEDIVCQRDGTLRVP 252 (294)
Q Consensus 178 ~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~P-er~Iifls~c~~~~Sl~~li~~----~~g~~~~~i~C~~~~~~~~~ 252 (294)
....+++++.++..++.++++.-+++. |- | ..-|+-+|++=+++++..+... +.+ .. ..
T Consensus 43 ~~~~~~~~~g~~gN~lvi~~~~~~~~~--~~-~~~~~l~~La~aDll~~~~~~p~~~~~~~~~---~~--------~~-- 106 (481)
T 3pbl_A 43 LSYCALILAIVFGNGLVCMAVLKERAL--QT-TTNYLVVSLAVADLLVATLVMPWVVYLEVTG---GV--------WN-- 106 (481)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHCSTT--CS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT---SC--------CC--
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhcccc--CC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---Cc--------cc--
Confidence 445666777777777777776655432 22 2 2234555666555544332211 111 00 00
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12958 253 GPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITL 288 (294)
Q Consensus 253 ~~~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa 288 (294)
..+..|.+..++.+++..++++--++++++=|++.
T Consensus 107 -~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI 141 (481)
T 3pbl_A 107 -FSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAV 141 (481)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11267999999999999999888888888877775
No 18
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=54.94 E-value=97 Score=26.20 Aligned_cols=97 Identities=11% Similarity=0.048 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCceeecCCCceeecCCCCC
Q psy12958 178 NTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVPGPRFD 257 (294)
Q Consensus 178 ~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~Per~Iifls~c~~~~Sl~~li~~~~g~~~~~i~C~~~~~~~~~~~~d~ 257 (294)
....+..+++.+.+++.++++.-+++. |-.++.-|+=+|++=+++++......... . .+ -...+.
T Consensus 16 i~y~ii~i~gv~gN~lvi~vi~~~~~l--rt~~n~~i~nLAvaDll~~l~~p~~~~~~-----~----~~----~~~~~~ 80 (296)
T 2lnl_A 16 IAYALVFLLSLLGNSLVMLVILYSRVG--RSVTDVYLLNLALADLLFALTLPIWAASK-----V----NG----WIFGTF 80 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTC--CSTTHHHHHHHHHHHHHHHHHHHHHHHHH-----H----SS----SCCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC--CChHHHHHHHHHHHHHHHHHhhhHHHhhc-----c----CC----Cccchh
Confidence 334455666777777777777665543 32023345666666666665433322111 0 00 001236
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12958 258 LCTVTFVIIYWSVISGLVWFIILTYILHITLQ 289 (294)
Q Consensus 258 ~C~~~f~l~yff~maa~lWWvil~~~Wflaa~ 289 (294)
.|.+..++.+.+..+++.-.+.++++=|++..
T Consensus 81 ~c~~~~~~~~~~~~~s~~~l~~isidRy~aI~ 112 (296)
T 2lnl_A 81 LCKVVSLLKEVNFYSGILLLACISVDRYLAIV 112 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhh
Confidence 89999999999999999999999988887753
No 19
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=46.38 E-value=53 Score=29.56 Aligned_cols=97 Identities=10% Similarity=0.033 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCCcchHHHHHHHHHHHHHHHHHHhc-CCCCCCceeecCCCceeecCC
Q psy12958 176 MQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLLQFT-PGIDKEDIVCQRDGTLRVPGP 254 (294)
Q Consensus 176 ~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~Per~Iifls~c~~~~Sl~~li~~~-~g~~~~~i~C~~~~~~~~~~~ 254 (294)
.-....+++++.++..++.++.+.-+++. +-..+.-|+-+|++=+++++..+...+ .. . + ...
T Consensus 34 ~~~i~~~i~~~gi~gN~~vl~~~~~~~~l--~~~~~~~l~~La~~Dll~~~~~~p~~~~~~--~--------~-~~~--- 97 (447)
T 4eiy_A 34 YITVELAIAVLAILGNVLVCWAVWLNSNL--QNVTNYFVVSLAAADIAVGVLAIPFAITIS--T--------G-FCA--- 97 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCGGG--CSHHHHHHHHHHHHHHHHHHTHHHHHHHHH--T--------T-CEE---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c--------c-ccc---
Confidence 34444556667777777777776654432 210133455566666655443322111 11 0 0 000
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12958 255 RFDLCTVTFVIIYWSVISGLVWFIILTYILHITL 288 (294)
Q Consensus 255 ~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa 288 (294)
.+..|.+..++.+++..++++--++++++=|++.
T Consensus 98 ~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI 131 (447)
T 4eiy_A 98 ACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAI 131 (447)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHeEE
Confidence 1246999999998888888887888887766654
No 20
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=43.59 E-value=38 Score=31.78 Aligned_cols=96 Identities=8% Similarity=-0.029 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCC-cchHHHHHHHHHHHHHHHHH----HhcCCCCCCceeecCCCce
Q psy12958 175 SMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFT-SQVILYINICFFNTCIGWLL----QFTPGIDKEDIVCQRDGTL 249 (294)
Q Consensus 175 ~~~~~~~v~s~icf~~t~f~llTF~i~~~r~~ry~P-er~Iifls~c~~~~Sl~~li----~~~~g~~~~~i~C~~~~~~ 249 (294)
.+-....+++++.++..++.++++.-.++. |- | ..-|+-+|++=+++++..+. ..+.+ . .
T Consensus 184 ~~~i~~~ii~~~gi~gN~lvi~vi~~~~~l--r~-~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~--~----------~ 248 (514)
T 3sn6_R 184 GMGIVMSLIVLAIVFGNVLVITAIAKFERL--QT-VTNYFITSLACADLVMGLAVVPFGAAHILTK--T----------W 248 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGG--CC-HHHHHHHHHHHHHHTTTTTHHHHHHHHHHHT--S----------C
T ss_pred HHHHHHHHHHHHHHHhHHHhhhheeccccc--cc-HHHHHHHHHHHHHHHHHHHhCHHHHHHHHcC--C----------e
Confidence 344556666777777777777666543332 22 2 22345555555554432221 11111 0 0
Q ss_pred eecCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12958 250 RVPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITL 288 (294)
Q Consensus 250 ~~~~~~d~~C~~~f~l~yff~maa~lWWvil~~~Wflaa 288 (294)
. ..+..|.+..++.+++..++..--+++++.=|++.
T Consensus 249 ~---~~~~~C~~~~~l~~~~~~~S~~~l~~isidRy~aI 284 (514)
T 3sn6_R 249 T---FGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAI 284 (514)
T ss_dssp C---SCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred e---CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 11357999999999999988888888888777664
No 21
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=28.43 E-value=2.6e+02 Score=26.02 Aligned_cols=33 Identities=6% Similarity=-0.023 Sum_probs=29.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12958 257 DLCTVTFVIIYWSVISGLVWFIILTYILHITLQ 289 (294)
Q Consensus 257 ~~C~~~f~l~yff~maa~lWWvil~~~Wflaa~ 289 (294)
..|.+.+++.+.+..++++-.++++++=|++..
T Consensus 108 ~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~ 140 (510)
T 4grv_A 108 AGCRGYYFLRDACTYATALNVASLSVARYLAIC 140 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEe
Confidence 579999999999999999999999998888753
No 22
>4g5a_A Uncharacterized protein; immunoglobulin - like beta-sandwich, structural genomics, JO center for structural genomics, JCSG; 1.69A {Bacteroides thetaiotaomicron}
Probab=24.44 E-value=20 Score=26.44 Aligned_cols=15 Identities=60% Similarity=0.820 Sum_probs=12.4
Q ss_pred eeeeeeeEecccccccc
Q psy12958 13 KVFFAPVNVELSAKDIV 29 (294)
Q Consensus 13 ~~~~~~~~~~~~~~~i~ 29 (294)
|-.||||.||. |||-
T Consensus 39 kd~fa~i~vev--kdie 53 (99)
T 4g5a_A 39 KDSFAPITVEV--KDIE 53 (99)
T ss_dssp SSCCCCEEEEE--ECTT
T ss_pred ccccccEEEEe--eehh
Confidence 77899999998 7763
Done!