RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12958
(294 letters)
>gnl|CDD|143560 cd07451, CRD_SMO, Cysteine-rich domain of the smoothened receptor
(Smo) integral membrane protein. The cysteine-rich
domain (CRD) is part of the smoothened receptor (Smo),
an integral membrane protein and one of the key players
in the Hedgehog (Hh) signaling pathway, critical for
development, cell growth and migration, as well as stem
cell maintenance. The CRD of Smo is conserved in
vertebrates and can also be identified in invertebrates.
The precise function of the CRD in Smo is unknown.
Mutations in the Drosophila CRD disrupt Smo activity in
vivo, while deletion of the CRD in mammalian cells does
not seem to affect the activity of overexpressed Smo.
Length = 132
Score = 131 bits (331), Expect = 3e-38
Identities = 51/96 (53%), Positives = 66/96 (68%), Gaps = 3/96 (3%)
Query: 49 NERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRIVAQELS 108
E+L W GL+ +PKCWAVIQ LCALYMPKCE+ V +PSQE+C+ GPC+IV E
Sbjct: 38 QEKLHLWSGLRNVPKCWAVIQPLLCALYMPKCENGKVELPSQEMCQATRGPCKIVENERG 97
Query: 109 -PEF-NCQNGTKISSHSCKNEGRDLKFNSTGQCKPP 142
P+F C N + CKN+ R+LKFN++GQC+ P
Sbjct: 98 WPDFLRCDN-DRFPPRGCKNDVRELKFNTSGQCESP 132
>gnl|CDD|216557 pfam01534, Frizzled, Frizzled/Smoothened family membrane region.
This family contains the membrane spanning region of
frizzled and smoothened receptors. This membrane region
is predicted to contain seven transmembrane alpha
helices. Proteins related to Drosophila frizzled are
receptors for Wnt (mediating the beta-catenin signalling
pathway), but also the planar cell polarity (PCP)
pathway and the Wnt/calcium pathway. The predominantly
alpha-helical Cys-rich ligand-binding region (CRD) of
Frizzled is both necessary and sufficient for Wnt
binding. The smoothened receptor mediates hedgehog
signalling.
Length = 328
Score = 73.9 bits (182), Expect = 4e-15
Identities = 35/124 (28%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 166 PLYSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTC 225
PL+S++E ++ I + C L + +VLT I+W+ + + I+Y++ C+
Sbjct: 1 PLFSRDEKRFARSWIGWWSALCFLSTLFTVLTFLIDWKRFR--YPERPIIYLSACYLIVS 58
Query: 226 IGWLLQFTPGIDKEDIVC-QRDGTLR--VPGPRFDL-CTVTFVIIYWSVISGLVWFIILT 281
+G+L+ F + +E + C + DG +R G +L CTV F+++Y+ ++ VW++ILT
Sbjct: 59 LGYLIGFV--LGRESVACRKADGGMRTVTQGSTENLSCTVLFLLVYFFGMASSVWWVILT 116
Query: 282 YILH 285
Sbjct: 117 LTWF 120
>gnl|CDD|214498 smart00063, FRI, Frizzled. Drosophila melanogaster frizzled
mediates signalling that polarises a precursor cell
along the anteroposterior axis. Homologues of the
N-terminal region of frizzled exist either as
transmembrane or secreted molecules. Frizzled homologues
are reported to be receptors for the Wnt growth factors.
(Not yet in MEDLINE: the FRI domain occurs in several
receptor tyrosine kinases [Xu, Y.K. and Nusse, Curr.
Biol. 8 R405-R406 (1998); Masiakowski, P. and
Yanopoulos, G.D., Curr. Biol. 8, R407 (1998)].
Length = 113
Score = 48.5 bits (116), Expect = 2e-07
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 55 WQGLKYIPKCWAVIQSFLCALYMPKCE-DNVVSVPSQEVCKLLSGPCRIV 103
+ L + C ++ FLC++Y P C D +P + +C+ C +
Sbjct: 38 FHPLLNVQ-CSPDLRFFLCSVYAPICTEDLRPILPCRSLCEAAREGCEPL 86
>gnl|CDD|201766 pfam01392, Fz, Fz domain. Also known as the CRD (cysteine rich
domain), the C6 box in MuSK receptor. This domain of
unknown function has been independently identified by
several groups. The domain contains 10 conserved
cysteines.
Length = 108
Score = 46.2 bits (110), Expect = 9e-07
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 55 WQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSV--PSQEVCKLLSGPCRIVAQELS---P 109
W L + KC +Q FLC+LY P C + + + P + +C+ + C V + P
Sbjct: 38 WTPLVNV-KCSPALQFFLCSLYAPVCTEGLRTPIPPCRSLCEAVKEGCEPVMETFGFGWP 96
Query: 110 EF-NCQ 114
E C
Sbjct: 97 ELLECS 102
>gnl|CDD|143549 cd07066, CRD_FZ, CRD_domain cysteine-rich domain, also known as Fz
(frizzled) domain. CRD_FZ is an essential component of
a number of cell surface receptors, which are involved
in multiple signal transduction pathways, particularly
in modulating the activity of the Wnt proteins, which
play a fundamental role in the early development of
metazoans. CRD is also found in secreted frizzled
related proteins (SFRPs), which lack the transmembrane
segment found in the frizzled protein. The CRD domain is
also present in the alpha-1 chain of mouse type XVIII
collagen, in carboxypeptidase Z, several receptor
tyrosine kinases, and the mosaic transmembrane serine
protease corin. The CRD domain is well conserved in
metazoans - 10 frizzled proteins have been identified in
mammals, 4 in Drosophila and 3 in Caenorhabditis
elegans. CRD domains have also been identified in
multiple tandem copies in a Dictyostelium discoideum
protein. Very little is known about the mechanism by
which CRD domains interact with their ligands. The
domain contains 10 conserved cysteines.
Length = 119
Score = 37.5 bits (87), Expect = 0.001
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 63 KCWAVIQSFLCALYMPKCEDNVVSV--PSQEVCKLLSGPCRIVAQELS 108
C ++ FLC+LY P+C + P + +C+ + C +
Sbjct: 46 GCHPDLRFFLCSLYFPECTPDGDRPIPPCRSLCEEVRDSCEPLMLAFG 93
>gnl|CDD|177356 PHA02256, PHA02256, hypothetical protein.
Length = 113
Score = 32.6 bits (74), Expect = 0.062
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 189 LFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGW-----LLQFTPGIDKEDIVC 243
+F LS+LTL I F+S+ + + + + IG + Q T + K D++
Sbjct: 10 VFTCLSLLTLMI---FVHSKFSSKNVFVLYVIYAIIGIGTYIVLTMFQTTSVLIKNDVID 66
Query: 244 QRDGTLRVPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQEK 291
+ T G F+ + F+I + I G +W+ ++ I ++K
Sbjct: 67 SIENTEHYIG--FNDPIIIFIISFIGAILGGIWYKMMKIIKKSNFKDK 112
>gnl|CDD|220690 pfam10321, 7TM_GPCR_Srt, Serpentine type 7TM GPCR chemoreceptor
Srt. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srt is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 313
Score = 32.6 bits (75), Expect = 0.18
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 21/96 (21%)
Query: 140 KPPLVSTEVVASFYPGVEGCGLQCSDPLYSKEEHESMQNT------IFVLAITCALFIVL 193
KP + +++ ++ F+ DPL ++ E N V+ T L+ L
Sbjct: 169 KPVIFNSKYMSWFF-----------DPLIFGKDPEIYVNIPHTVNNFIVVICTTFLYGYL 217
Query: 194 SVLTLAINWEATSMYFTS---QVILY-INICFFNTC 225
L + +TS + Q+ L + ICFF+
Sbjct: 218 CYLLIKKFGYSTSSWLYKSKRQIFLQSVIICFFHAI 253
>gnl|CDD|225088 COG2177, FtsX, Cell division protein [Cell division and chromosome
partitioning].
Length = 297
Score = 31.8 bits (73), Expect = 0.31
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 179 TIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINI 219
T+ V+AIT L V ++ L +N AT ++ +Y+ I
Sbjct: 27 TVSVVAITLFLPGVFLLVVLNVNSLATQWESQVEITVYLQI 67
>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional.
Length = 461
Score = 31.4 bits (71), Expect = 0.63
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 139 CKPPLVSTEVVA--------SFYPGVEGCGLQCSDPLY 168
CKPP +VVA + PG EGC + S P Y
Sbjct: 156 CKPPSEVAKVVAGLGFAIHRALTPGSEGCVFESSHPDY 193
>gnl|CDD|143558 cd07449, CRD_FZ3, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 3 (Fz3) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 3 (Fz3) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. Fz3 plays a vital role in the
anterior-posterior guidance of commissural axons.
Knockout mice without Fz3 show defects in fiber tracts
in the rostral CNS.
Length = 127
Score = 29.2 bits (65), Expect = 1.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 63 KCWAVIQSFLCALYMPKC-EDNVVSVPSQEVCKLLSGPC 100
+C + FLCALY P C E V++P + +C+ C
Sbjct: 49 ECSRDFRPFLCALYAPVCMEYGRVTLPCRRLCQRAYSEC 87
>gnl|CDD|146927 pfam04531, Phage_holin_1, Bacteriophage holin. This family of
holins is found in several staphylococcal and
streptococcal bacteriophages. Holins are a diverse
family of proteins that cause bacterial membrane lysis
during late-protein synthesis. It is thought that the
temporal precision of holin-mediated lysis may occur
through the buildup of a holin oligomer which causes the
lysis.
Length = 84
Score = 28.5 bits (64), Expect = 1.2
Identities = 8/46 (17%), Positives = 20/46 (43%)
Query: 176 MQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICF 221
++N F +A+ A+ ++ + +EA +Q+ +N
Sbjct: 8 LKNKAFWVALISAVLLLAQQVGGVFGYEADISILLNQLTDIVNAVL 53
>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE. TrmE,
also called MnmE and previously designated ThdF
(thiophene and furan oxidation protein), is a GTPase
involved in tRNA modification to create
5-methylaminomethyl-2-thiouridine in the wobble position
of some tRNAs. This protein and GidA form an
alpha2/beta2 heterotetramer [Protein synthesis, tRNA and
rRNA base modification].
Length = 442
Score = 30.1 bits (68), Expect = 1.5
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 1 PKKSVEENTSLTKVFFAPVNVELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKY 60
+S +L K +VD L++ +N S RV++ + + WQ +
Sbjct: 324 INSLEFFVSSKVLNSSNLSAKQLKIKALVDLLTQKINAFYSKERVELDDYLISSWQAMIL 383
Query: 61 IPKCWAVIQSFL 72
+ K A +Q FL
Sbjct: 384 LEKAIAQLQQFL 395
>gnl|CDD|143572 cd07463, CRD_FZ9, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 9 (Fz9) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 9 (Fz9) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. Fz9 may play a signaling role in lymphoid
development and maturation, particularly at points where
B cells undergo self-renewal prior to further
differentiation.
Length = 127
Score = 28.8 bits (64), Expect = 1.8
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 64 CWAVIQSFLCALYMPKCEDNV-VSVPSQEVCKLLSGPCRIVAQELSPEFN 112
C ++ FLC+LY P C D V S+P+ C+ + R + +FN
Sbjct: 50 CHVHLRFFLCSLYAPMCTDQVSTSIPA---CRPMCEQARQKCSPIMEQFN 96
>gnl|CDD|143571 cd07462, CRD_FZ10, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 10 (Fz10) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 10 (Fz10) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. The cellular functon of Fz10 is unknown.
Length = 127
Score = 28.4 bits (63), Expect = 2.1
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 64 CWAVIQSFLCALYMPKCEDNVVS-VPSQEVCKLLSGPCRIVAQELSPEFN 112
C + ++ FLC+LY P C + V + +P+ C+++ R+ + +FN
Sbjct: 50 CHSHLKFFLCSLYAPMCTEQVSTPIPA---CRVMCEQARLKCSPIMEQFN 96
>gnl|CDD|222420 pfam13858, DUF4199, Protein of unknown function (DUF4199). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 167 and 182 amino
acids in length.
Length = 162
Score = 28.8 bits (65), Expect = 2.2
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 15/100 (15%)
Query: 184 AITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVC 243
I L+++ +L L T + + I + ++ ++
Sbjct: 8 LILILLWLLSYLLGLHDLHIPTLPLLG-----LLLLVITIALIYYAIKRY----RKKA-- 56
Query: 244 QRDGTLRVPGPRFDLCTVTFVIIYWSVISGLVWFIILTYI 283
G + G F + +I ++IS + +I +I
Sbjct: 57 -NGGFISF-GQAFKFGLLISLIA--ALISTVFQYIYFNFI 92
>gnl|CDD|206215 pfam14045, YIEGIA, YIEGIA protein. This family includes the B.
subtilis YphB protein, which is functionally
uncharacterized. Its expression is regulated by the
sporulation transcription factor sigma-F, however it is
not essential for sporulation or germination. This is
not a homologue of E. coli YphB, which belongs to
pfam01263. This family of proteins is found in bacteria.
Proteins in this family are typically between 276 and
300 amino acids in length and contain a conserved YIEGIA
motif.
Length = 286
Score = 29.5 bits (67), Expect = 2.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 258 LCTVTFVIIYWSVISGLVWFIILTYILH 285
L T I++ S+I G++ +IL IL
Sbjct: 118 LLTSLAYILFQSIIIGIIAGLILFLILK 145
>gnl|CDD|177157 MTH00094, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 403
Score = 29.5 bits (67), Expect = 2.5
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 176 MQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICFFNTCIGWLL 230
+ +FVL I +FI+ VL N+ ++ S +++ I + FF + +L
Sbjct: 36 FDSFVFVLLIFMMVFILGLVLLSEKNF---NLLILSNLLILICLLFFVSSNMLML 87
>gnl|CDD|143552 cd07443, CRD_SFRP1, Cysteine-rich domain of the secreted
frizzled-related protein 1 (SFRP1), a regulator of Wnt
activity. The cysteine-rich domain (CRD) is an
essential part of the secreted frizzled-related protein
1 (SFRP1), which regulates the activity of Wnt proteins,
key players in a number of fundamental cellular
processes such as embryogenesis and postnatal
development. SFRPs antagonize the activation of Wnt
signaling by binding to the CRDs domains of frizzled
(Fz) proteins, thereby preventing Wnt proteins from
binding to these receptors. SFRPs are also known to have
functions unrelated to Wnt, as enhancers of procollagen
cleavage by the TLD proteinases. SFRPs and Fz proteins
both contain CRD domains, but SFRPs lack the seven-pass
transmembrane domain which is an integral part of Fzs.
SFRP1 is expressed in many tissues and is involved in
the regulation of Wnt signaling in osteoblasts, leading
to enhanced trabecular bone formation in adults; it has
also been shown to control the growth of retinal
ganglion cell axons and the elongation of the
antero-posterior axis.
Length = 124
Score = 28.3 bits (63), Expect = 2.6
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 54 RWQGLKYIP----KCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRIVAQ 105
+ Q ++P C Q FLC+L+ P C D V P + +C+ + C V Q
Sbjct: 40 KQQASSWVPLLNKNCHKGTQVFLCSLFAPVCLDRPV-YPCRWLCEAVRDSCEPVMQ 94
>gnl|CDD|143553 cd07444, CRD_SFRP5, Cysteine-rich domain of the secreted
frizzled-related protein 5 (SFRP5), a regulator of Wnt
activity. The cysteine-rich domain (CRD) is an
essential part of the secreted frizzled-related Protein
5 (SFRP5), which regulates the activity of Wnt proteins,
key players in a number of fundamental cellular
processes such as embryogenesis and postnatal
development. SFRPs antagonize the activation of Wnt
signaling by binding to the CRD domains of frizzled (Fz)
proteins, thereby preventing Wnt proteins from binding
to these receptors. SFRPs are also known to have
functions unrelated to Wnt, as enhancers of procollagen
cleavage by the TLD proteinases. SFRPs and Fz proteins
both contain CRD domains, but SFRPs lack the seven-pass
transmembrane domain which is an integral part of Fzs.
Length = 127
Score = 28.0 bits (62), Expect = 2.9
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 63 KCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPC 100
+C A Q FLC+L+ P C D + P + +C+ + C
Sbjct: 53 RCHADTQVFLCSLFAPVCLDRPI-YPCRSLCEAVRDSC 89
>gnl|CDD|143557 cd07448, CRD_FZ4, Cysteine-rich Wnt-binding domain of the frizzled
4 (Fz4) receptor. The cysteine-rich domain (CRD) is an
essential extracellular portion of the frizzled 4 (Fz4)
receptor, and is required for binding Wnt proteins,
which play fundamental roles in many aspects of early
development, such as cell and tissue polarity, neural
synapse formation, and the regulation of proliferation.
Fz proteins serve as Wnt receptors for multiple signal
transduction pathways, including both beta-catenin
dependent and -independent cellular signaling, as well
as the planar cell polarity pathway and the Ca(2+)
modulating signaling pathway. CRD containing Fzs have
been found in diverse species from amoebas to mammals.
10 different frizzled proteins are found in vertebrata.
Frizzled 4 (Fz4) activates the
Ca(2+)/calmodulin-dependent protein kinase II and
protein kinase C of the Wnt/Ca(2+) signaling pathway
during retinal angiogenesis. Mutations in Fz4 lead to
familial exudative vitreoretinopathy (FEVR), a
hereditary ocular disorder characterized by failure of
the peripheral retinal vascularization. In addition, the
interplay between Fz4 and norrin as a receptor-ligand
pair plays an important role in vascular development in
the retina and inner ear in a Wnt-independent manner.
Length = 126
Score = 27.8 bits (62), Expect = 3.0
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 64 CWAVIQSFLCALYMPKCED--NVVSVPSQEVCKLLSGPCRIVAQELS----PEFNCQN 115
C + ++ FLC++Y+P C + V P + +C + C V +E NC
Sbjct: 49 CSSQLKFFLCSVYVPMCTEKVPVPIGPCRPLCLSVKKRCLPVLKEFGFPWPEALNCSK 106
>gnl|CDD|143551 cd07442, CRD_SFRP4, Cysteine-rich domain of the secreted
frizzled-related protein 4 (SFRP4), a Wnt antagonist.
The cysteine-rich domain (CRD) is an essential part of
the secreted frizzled-related Protein 4 (SFRP4), which
regulates the activity of Wnt proteins, key players in a
number of fundamental cellular processes such as
embryogenesis and postnatal development. SFRPs
antagonize the activation of Wnt signaling by binding to
the CRDs domains of frizzled (Fz) proteins, thereby
preventing Wnt proteins from binding to these receptors.
SFRPs are also known to have functions unrelated to Wnt,
as enhancers of procollagen cleavage by the TLD
proteinases. SFRPs and Fz proteins both contain CRD
domains, but SFRPs lack the seven-pass transmembrane
domain which is an integral part of Fzs.
Length = 127
Score = 28.1 bits (62), Expect = 3.3
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 64 CWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRIVAQ 105
C V+ FLCA+Y P C + P + PCR V Q
Sbjct: 50 CSPVLPFFLCAMYAPICTLEFLYDPIK--------PCRSVCQ 83
>gnl|CDD|237216 PRK12821, PRK12821, aspartyl/glutamyl-tRNA amidotransferase subunit
C-like protein; Provisional.
Length = 477
Score = 28.7 bits (64), Expect = 3.9
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 23/88 (26%)
Query: 167 LYSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINICF---FN 223
+ + +H + Q T+FVL +++L+V+TLA +L INI F F+
Sbjct: 261 FHRRYKHANHQFTLFVLTKENWFYLILNVITLA-----------GTSLLMINIAFIPIFD 309
Query: 224 TCIG------WL---LQFTPGIDKEDIV 242
T WL L F P I DI+
Sbjct: 310 TQTTGQTYAFWLLIRLLFAPAIFLLDII 337
>gnl|CDD|232795 TIGR00042, TIGR00042, non-canonical purine NTP pyrophosphatase,
RdgB/HAM1 family. Saccharomyces cerevisiae HAM1
protects against the mutagenic effects of the base
analog 6-N-hydroxylaminopurine, which can be a natural
product of monooxygenase activity on adenine.
Methanococcus jannaschii MJ0226 and E. coli RdgB are
also characterized as pyrophosphatases active against
non-standard purines NTPs. E. coli RdgB appears to act
by intercepting non-canonical deoxyribonucleotide
triphosphates from replication precursor pools. [DNA
metabolism, DNA replication, recombination, and
repair].
Length = 184
Score = 28.1 bits (63), Expect = 4.7
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 20 NVELSAKDIVDALSKVVNTEDSALRVDVQN 49
N L AK L+K V EDS L VD N
Sbjct: 45 NALLKAKHAAKILNKPVIAEDSGLFVDALN 74
>gnl|CDD|143559 cd07450, CRD_FZ6, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 6 (Fz6) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 6 (Fz6) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. Frizzled 6 (Fz6) is expressed in the skin
and hair follicles and controls hair patterning in
mammals using a Fz-dependent tissue polarity system,
which is similar to the one that patterns the Drosophila
cuticle.
Length = 127
Score = 27.4 bits (61), Expect = 5.0
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 63 KCWAVIQSFLCALYMPKCEDNVVSV-PSQEVCKLLSGPCR 101
+C + +FLC ++P C + + V P +E+C+ + C+
Sbjct: 49 RCSPNVHTFLCQAFVPTCTEQIHVVRPCRELCEKVYSDCK 88
>gnl|CDD|221064 pfam11294, DUF3095, Protein of unknown function (DUF3095). Some
members in this bacterial family of proteins are
annotated as adenylyl cyclase however this cannot be
confirmed. Currently no function is known.
Length = 373
Score = 28.0 bits (63), Expect = 5.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 51 RLKRWQGLKYIPKCWAVIQSFLCALYM 77
R +R GL ++ + +IQ+ L L
Sbjct: 245 RARRGVGLLWLRRLKVLIQTLLGYLLF 271
>gnl|CDD|178056 PLN02437, PLN02437, ribonucleoside--diphosphate reductase large
subunit.
Length = 813
Score = 28.2 bits (63), Expect = 7.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 135 STGQCKPPLVSTEVVASFYPGV 156
S C P LV+ +V A Y GV
Sbjct: 30 SQDHCDPVLVAQKVCAGVYKGV 51
>gnl|CDD|217165 pfam02653, BPD_transp_2, Branched-chain amino acid transport system
/ permease component. This is a large family mainly
comprising high-affinity branched-chain amino acid
transporter proteins such as E. coli LivH and LivM, both
of which are form the LIV-I transport system. Also found
with in this family are proteins from the galactose
transport system permease and a ribose transport system.
Length = 267
Score = 27.6 bits (62), Expect = 8.5
Identities = 4/39 (10%), Positives = 14/39 (35%)
Query: 251 VPGPRFDLCTVTFVIIYWSVISGLVWFIILTYILHITLQ 289
DL + + + + ++L ++ + L+
Sbjct: 111 GTSTIVDLLGFPGLFLSFGFGVIFLLALLLALLVWLLLR 149
>gnl|CDD|217363 pfam03094, Mlo, Mlo family. A family of plant integral membrane
proteins, first discovered in barley. Mutants lacking
wild-type Mlo proteins show broad spectrum resistance to
the powdery mildew fungus, and dysregulated cell death
control, with spontaneous cell death in response to
developmental or abiotic stimuli. Thus wild-type Mlo
proteins are thought to be inhibitors of cell death
whose deficiency lowers the threshold required to
trigger the cascade of events that result in plant cell
death. Mlo proteins are localised in the plasma membrane
and possess seven transmembrane regions; thus the Mlo
family is the only major higher plant family to possess
7 transmembrane domains. It has been suggested that Mlo
proteins function as G-protein coupled receptors in
plants; however the molecular and biological functions
of Mlo proteins remain to be fully determined.
Length = 481
Score = 27.3 bits (61), Expect = 9.8
Identities = 29/142 (20%), Positives = 47/142 (33%), Gaps = 49/142 (34%)
Query: 155 GVEGCGLQCSDPLYSKEEHESMQNTIFVLAIT----CALFIVLSVLTLAI----NWEA-- 204
+ C + PL S E + IFVLA+ A+ ++L L I WE
Sbjct: 118 SPDYCAEKGKVPLVSLEALHQLHIFIFVLAVFHVLYSAITMMLG--RLKIRQWKKWEDET 175
Query: 205 --------------------------TSMYFTSQVILYINICFFNTCIGWLLQFTPGIDK 238
+ + S+ + ++ CFF QF + K
Sbjct: 176 KSIEYEFSNDPSRFRHTHETSFVREHLNGWSKSRFLFWV-QCFFR-------QFFGSVTK 227
Query: 239 EDIVCQRDGTLRV---PGPRFD 257
D + R G + P P+F+
Sbjct: 228 SDYLTLRHGFIMAHLAPNPKFN 249
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.429
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,176,754
Number of extensions: 1287393
Number of successful extensions: 1295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1288
Number of HSP's successfully gapped: 42
Length of query: 294
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 198
Effective length of database: 6,679,618
Effective search space: 1322564364
Effective search space used: 1322564364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)