RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12958
(294 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 1e-05
Identities = 45/287 (15%), Positives = 90/287 (31%), Gaps = 93/287 (32%)
Query: 25 AKDIVDALSKVV---NTEDSALRVDVQNERLKRWQGLKYIPKCW-AVIQSFLCALYMPKC 80
++ +V A+ + ++ +S + + + G++ C+ A + L +
Sbjct: 274 SQGLVTAV--AIAETDSWESFFVSVRKAITVLFFIGVR----CYEAYPNTSLPPSILEDS 327
Query: 81 EDNVVSVPSQEVCKLLS--GPCRIVAQELSPEFNCQ--NGTKISSHSCKNEGRDLKFNST 136
+N VPS +LS + Q+ + N G ++ S N G +
Sbjct: 328 LENNEGVPS----PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI-SLVN-GAK-NLVVS 380
Query: 137 G----------------------QCKPPL------VSTE---VVASF---Y--PGVE--- 157
G Q + P S V + F P +
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 158 ------GCGLQCSD---PLYSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMY 208
D P+Y + ++ L+ + + IV ++ L + WE T+ +
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRV----LSGSISERIVDCIIRLPVKWETTTQF 496
Query: 209 FTSQVILYINICFFNTCIGWLLQFTPGIDK--EDIVCQ-RDGT-LRV 251
+ +L F PG + + +DGT +RV
Sbjct: 497 KAT----------------HILDFGPGGASGLGVLTHRNKDGTGVRV 527
>1ijy_A Frizzled homolog 8; WNT receptor, frizzled protein structure,
cysteine-rich, signaling protein; 1.35A {Mus musculus}
SCOP: a.141.1.1
Length = 130
Score = 40.1 bits (93), Expect = 1e-04
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 49 NERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSV--PSQEVCKLLSGPCRIVAQE 106
+ ++ L I +C ++ FLC++Y P C ++ P + VC+ C + ++
Sbjct: 41 GLEVHQFWPLVEI-QCSPDLKFFLCSMYTPICLEDYKKPLPPCRSVCERAKAGCAPLMRQ 99
Query: 107 LS----PEFNCQN 115
C
Sbjct: 100 YGFAWPDRMRCDR 112
>1ijx_A Secreted frizzled-related sequence protein 3; WNT receptor,
frizzled protein structure, cysteine-rich, SIG protein;
1.90A {Mus musculus} SCOP: a.141.1.1
Length = 127
Score = 39.3 bits (91), Expect = 3e-04
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 64 CWAVIQSFLCALYMPKCEDNVVSV---PSQEVCKLLSGPCRIVAQELS---PEF-NCQN 115
C + FLCA+Y P C + P + VC+ C + + PE C
Sbjct: 50 CSPDLLFFLCAMYAPICTIDFQHEPIKPCKSVCERARQGCEPILIKYRHSWPESLACDE 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.004
Identities = 31/182 (17%), Positives = 55/182 (30%), Gaps = 22/182 (12%)
Query: 8 NTSLTKVFFAPVNVELSAKDIVDALSKVVNTE--DSALRVDVQNERLKR--WQGLKYIPK 63
+ VF KD+ D +++ E D + R W L +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK-QE 76
Query: 64 CWAVIQSFLCALYMPKCEDNV--VSVPSQEVCKLLSGPCRIVAQELSPEFNCQNGTKISS 121
++Q F+ + N + P + + S R+ ++ +N + +
Sbjct: 77 --EMVQKFVEEVL----RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--DNQVFAK 128
Query: 122 HSCKNEGRDLKFNSTGQCKPPLVSTEVVASFYPGVEGCGLQC--SDPLYSKEEHESMQNT 179
+ N R + Q L + V GV G G D S + M
Sbjct: 129 Y---NVSRLQPYLKLRQALLELRPAKNVLID--GVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 180 IF 181
IF
Sbjct: 184 IF 185
Score = 36.4 bits (83), Expect = 0.012
Identities = 47/292 (16%), Positives = 88/292 (30%), Gaps = 83/292 (28%)
Query: 13 KVFFAPVNVELSAKDIVDALSKVVNTEDSA------------LRVDVQNERLKRWQGLKY 60
K+F+ + S + +++ L K++ D LR+ L+R K
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 61 IPKCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRI--------VAQELSPEFN 112
C L L NV + + + C+I V LS
Sbjct: 243 YENC-------LLVL------LNVQNA---KAWNAFNLSCKILLTTRFKQVTDFLSA--- 283
Query: 113 CQNGTKISSHSC-----KNEGRDLKFNSTGQCKPPLVSTEVVASFYPGVEGCGLQCSDPL 167
T IS +E + L C+P + EV+ + + D L
Sbjct: 284 -ATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 168 -----YSKEEHESMQNTI--FVLAITCA----LFIVLSVL---------TLAINWEATSM 207
+ + + I + + A +F LSV L++ W
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI- 400
Query: 208 YFTSQVILYINICFFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVPGPRFDLC 259
V++ N + L ++K+ ++ T+ +P +L
Sbjct: 401 KSDVMVVV-------NKLHKYSL-----VEKQ----PKESTISIPSIYLELK 436
Score = 29.8 bits (66), Expect = 1.2
Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 14/105 (13%)
Query: 6 EENTSLTKVFFAPVNVE-LSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKYIPKC 64
E T VF + L K D+ + + ++ + YI
Sbjct: 488 ERMTLFRMVFL---DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-------PYICDN 537
Query: 65 WAVIQSFLCAL--YMPKCEDNVVSVPSQEVCKL-LSGPCRIVAQE 106
+ + A+ ++PK E+N++ ++ ++ L + +E
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis,
sulfur oxidation pathway, Cys S-thiosulfonate,
hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A*
2wde_A 2wdf_A
Length = 562
Score = 29.1 bits (65), Expect = 2.2
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 21 VELSAKDIVDALSKVVNTEDSALRVDVQNERLKRWQGLKY 60
L I L + + ++ Q + R GL+Y
Sbjct: 435 FYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRY 474
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily,
lyase inhibitor; 2.40A {Mus musculus}
Length = 687
Score = 29.2 bits (64), Expect = 2.2
Identities = 9/41 (21%), Positives = 10/41 (24%), Gaps = 2/41 (4%)
Query: 84 VVSVPSQEVCKLLSGPCRIVAQELSPEFNCQNGTKISSHSC 124
VVS C + V P C S C
Sbjct: 16 VVSDHEATKCSSFRDNMKKVLPAGGPAVTCVRKM--SHPEC 54
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG; HET: UMP;
2.71A {Staphylococcus aureus}
Length = 321
Score = 26.6 bits (59), Expect = 9.6
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 13/53 (24%)
Query: 235 GIDKEDIVCQR--DGTLRVPGP--RFDLCT----VTFVIIYW-SVISGLVWFI 278
G + D R GT+ G RFDL +T + + V + L+WFI
Sbjct: 23 GNTRND----RTNTGTISKFGHQLRFDLSKGFPLLTTKKVSFKLVATELLWFI 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.429
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,269,541
Number of extensions: 240753
Number of successful extensions: 345
Number of sequences better than 10.0: 1
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 17
Length of query: 294
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 201
Effective length of database: 4,105,140
Effective search space: 825133140
Effective search space used: 825133140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)