RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12958
         (294 letters)



>d1ijxa_ a.141.1.1 (A:) Secreted Frizzled-related protein 3
           (SFRP-3;fzb) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 125

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 7/57 (12%)

Query: 64  CWAVIQSFLCALYMPKCEDNVVSV---PSQEVCKLLSGPCRIVAQELSPE----FNC 113
           C   +  FLCA+Y P C  +       P + VC+     C  +  +          C
Sbjct: 48  CSPDLLFFLCAMYAPICTIDFQHEPIKPCKSVCERARQGCEPILIKYRHSWPESLAC 104


>d1ijya_ a.141.1.1 (A:) Frizzled 8 (FZ8) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 122

 Score = 32.8 bits (74), Expect = 0.016
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 14/68 (20%)

Query: 64  CWAVIQSFLCALYMPKCEDNVVSV--PSQEVCKLLSGPCRIVAQELS------------P 109
           C   ++ FLC++Y P C ++      P + VC+     C  + ++              P
Sbjct: 49  CSPDLKFFLCSMYTPICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDRMRCDRLP 108

Query: 110 EFNCQNGT 117
           E    +  
Sbjct: 109 EQGNPDTL 116


>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion
           domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 121

 Score = 24.9 bits (54), Expect = 7.0
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 168 YSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYI 217
           YS EE       I+   +   L IV ++ TL I +  ++    ++ ++++
Sbjct: 1   YSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQDDARKLMHM 50


>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease
           protein MalF {Escherichia coli [TaxId: 562]}
          Length = 244

 Score = 25.7 bits (55), Expect = 7.0
 Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 3/124 (2%)

Query: 164 SDPLYSKEEHESMQNTIFVLAITCALFIVLS-VLTLAINWEATSM--YFTSQVILYINIC 220
           +D    K        T+    IT  L + +  VL   + WEA      +   +IL   + 
Sbjct: 9   TDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVP 68

Query: 221 FFNTCIGWLLQFTPGIDKEDIVCQRDGTLRVPGPRFDLCTVTFVIIYWSVISGLVWFIIL 280
            F + + +   F     + +++      ++           T +II  + +      I+ 
Sbjct: 69  SFISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILC 128

Query: 281 TYIL 284
             +L
Sbjct: 129 MGLL 132


>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 122

 Score = 24.9 bits (54), Expect = 7.6
 Identities = 7/36 (19%), Positives = 17/36 (47%)

Query: 168 YSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWE 203
           + ++     ++TIF   +  +  +V +   L I W+
Sbjct: 1   FDQKALLEFRDTIFDNILKGSRVLVDARDKLGIPWQ 36


>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 117

 Score = 24.5 bits (53), Expect = 9.1
 Identities = 8/52 (15%), Positives = 23/52 (44%)

Query: 168 YSKEEHESMQNTIFVLAITCALFIVLSVLTLAINWEATSMYFTSQVILYINI 219
           YS E+       ++    T    ++ ++ TL I ++       +Q++  +++
Sbjct: 1   YSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDV 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,065,820
Number of extensions: 48613
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 12
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)