Query psy12959
Match_columns 239
No_of_seqs 159 out of 1085
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 15:30:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03149 alpha_CA_VII Carbonic 100.0 4E-51 8.7E-56 360.7 15.4 182 8-237 5-203 (236)
2 cd03118 alpha_CA_V Carbonic an 100.0 2.4E-50 5.3E-55 355.7 16.0 183 8-238 5-204 (236)
3 cd03119 alpha_CA_I_II_III_XIII 100.0 2.4E-50 5.1E-55 360.1 15.8 170 20-237 42-226 (259)
4 KOG0382|consensus 100.0 3.4E-50 7.4E-55 359.5 14.5 157 35-237 69-231 (262)
5 cd03121 alpha_CARP_X_XI_like C 100.0 5.9E-50 1.3E-54 357.1 15.7 170 20-237 35-222 (256)
6 cd03117 alpha_CA_IV_XV_like Ca 100.0 1.4E-49 3.1E-54 350.4 16.0 183 8-237 5-204 (234)
7 cd03122 alpha_CARP_receptor_li 100.0 2.3E-49 5.1E-54 352.7 15.8 156 36-237 60-220 (253)
8 cd03150 alpha_CA_IX Carbonic a 100.0 4.1E-49 8.9E-54 350.1 14.3 147 44-237 65-216 (247)
9 cd03126 alpha_CA_XII_XIV Carbo 100.0 5.6E-49 1.2E-53 349.5 14.9 141 50-237 69-216 (249)
10 cd03120 alpha_CARP_VIII Carbon 100.0 1.2E-48 2.5E-53 348.8 15.8 183 7-237 16-218 (256)
11 cd03125 alpha_CA_VI Carbonic a 100.0 3.1E-48 6.7E-53 344.8 15.8 146 45-237 65-218 (249)
12 PF00194 Carb_anhydrase: Eukar 100.0 4E-48 8.8E-53 344.3 16.1 183 8-238 25-224 (256)
13 cd03123 alpha_CA_VI_IX_XII_XIV 100.0 4.6E-48 9.9E-53 343.5 15.8 147 44-237 65-218 (248)
14 cd00326 alpha_CA Carbonic anhy 100.0 1.1E-47 2.5E-52 336.5 15.5 183 8-237 5-201 (227)
15 cd03124 alpha_CA_prokaryotic_l 100.0 2.7E-43 5.9E-48 306.9 13.2 165 8-238 22-196 (216)
16 PLN02202 carbonate dehydratase 100.0 2.5E-42 5.4E-47 312.3 13.4 124 54-237 111-240 (284)
17 PLN02179 carbonic anhydrase 100.0 7.4E-40 1.6E-44 289.1 13.6 120 43-228 111-230 (235)
18 COG3338 Cah Carbonic anhydrase 100.0 5.3E-40 1.2E-44 284.8 12.1 164 10-237 56-228 (250)
19 PF09211 DUF1958: Domain of un 27.9 20 0.00042 26.0 -0.0 18 68-85 8-25 (65)
20 smart00190 IL4_13 Interleukins 24.0 20 0.00044 29.6 -0.6 24 209-232 45-68 (138)
21 PF06594 HCBP_related: Haemoly 21.9 1.7E+02 0.0038 18.6 3.7 31 35-65 3-34 (43)
No 1
>cd03149 alpha_CA_VII Carbonic anhydrase alpha, CA isozyme VII_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme VII. CA VII is the most active cytosolic enzyme after CA II, and may be highly expressed in the brain. Human CA VII may be a target of antiepileptic sulfonamides/sulfamates.
Probab=100.00 E-value=4e-51 Score=360.72 Aligned_cols=182 Identities=37% Similarity=0.631 Sum_probs=152.2
Q ss_pred Cccchhhhhhhh-cCCCCc-ccccCCce---------EEEEEcCCCCeeEEeccCCCCceeeeEEEEeec-----CCccc
Q psy12959 8 RPGALQLLHTRL-HSLIPL-FSYFPFCA---------VVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG-----GSEHT 71 (239)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~-~~y~~~~~---------~~~~~~~~~~~~~i~gg~l~~~Y~l~q~HfHwG-----gSEHt 71 (239)
+|+.|....... ..+.|+ +.|.+... +.+.+.++...+.++||+|..+|+|.||||||| ||||+
T Consensus 5 SPInI~~~~~~~~~~l~~l~~~y~~~~~~~~~N~Ghtv~v~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~~gSEH~ 84 (236)
T cd03149 5 SPIDIVSSEAVYDPKLKPLSLSYDPCTSLSISNNGHSVMVEFDDSDDKTVITGGPLENPYRLKQFHFHWGAKHGSGSEHT 84 (236)
T ss_pred CCeeEccCceEECCCCCceEeecCCCcceEEEECCEEEEEEecCCCCceEEecCCCCCcEEEEEEEEecCCCCCCCCcee
Confidence 455554443322 345666 78875423 224444434568999999999999999999998 99999
Q ss_pred ccCccccceEEEEEeec-CCCChhhhhcCCCceEEEEEEEeeCCCCCCCccccccccCCCCcccccccchhhhhHHHhhh
Q psy12959 72 FNGQRLATEVHLVHYNS-QYESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQM 150 (239)
Q Consensus 72 idG~~~~~E~HiVh~~~-~y~~~~eA~~~~~glaVlavf~~~~~~~n~~l~~~~~~~~~~~~~~~~~c~r~~~~~~~~~~ 150 (239)
|||++|||||||||++. +|.++++|...++|+||||||++++. +|+.++
T Consensus 85 idg~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~g~-~n~~l~----------------------------- 134 (236)
T cd03149 85 VDGKTFPSELHLVHWNAKKYKSFGEAAAAPDGLAVLGVFLETGD-EHPGLN----------------------------- 134 (236)
T ss_pred ecCeeccceeeeeEecccccCCHHHHhhccCCcEEEEEEEEecC-CCccHH-----------------------------
Confidence 99999999999999998 79999999999999999999999994 577776
Q ss_pred cccccCCCCCCCchhhHHHHhcccCCCCCCeeEcCCCCCCCCcCCCCCCCcEEEeecccCCCCCCceEEEEeCeeeecCH
Q psy12959 151 SSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPCSESVEWTVLYRTVGASR 230 (239)
Q Consensus 151 ~~~~~~~~~~~~~l~~i~~~l~~~i~~~g~~~~i~~~~~l~~Llp~~~~~yy~Y~GSLTTPPCsE~V~WiV~~~pi~IS~ 230 (239)
.|++.+ ..+..+++...+.. |++.+|||.+. +||+|.||||||||+|+|+|+||++|+.||+
T Consensus 135 ---------------~i~~~l-~~i~~~~~~~~~~~-~~~~~llp~~~-~yy~Y~GSLTTPpC~E~V~W~V~~~pi~is~ 196 (236)
T cd03149 135 ---------------RLTDAL-YMVRFKGTKAQFLD-FNPKCLLPKSL-DYWTYPGSLTTPPLNESVTWIVLKEPIPVSE 196 (236)
T ss_pred ---------------HHHHHh-hhcccCCcceeecc-CCHHHHCCCCC-CeEEecccCcCCCCCCceEEEEeCceeeCCH
Confidence 788888 77777777777754 99999999885 8999999999999999999999999999999
Q ss_pred HHHhCcc
Q psy12959 231 TQVSNPI 237 (239)
Q Consensus 231 ~Ql~~~~ 237 (239)
+||++|+
T Consensus 197 ~Ql~~fr 203 (236)
T cd03149 197 KQMGKFR 203 (236)
T ss_pred HHHHHHH
Confidence 9999886
No 2
>cd03118 alpha_CA_V Carbonic anhydrase alpha, CA isozyme V_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme V. CA V is the mitochondrial isozyme, which may play a role in gluconeogenesis and ureagenesis and possibly also in lipogenesis.
Probab=100.00 E-value=2.4e-50 Score=355.73 Aligned_cols=183 Identities=38% Similarity=0.604 Sum_probs=152.0
Q ss_pred Cccchhhhhhh-hcCCCCc-ccccCCce---------EEEEEcCCCCeeEEeccCCCCceeeeEEEEeec-----CCccc
Q psy12959 8 RPGALQLLHTR-LHSLIPL-FSYFPFCA---------VVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG-----GSEHT 71 (239)
Q Consensus 8 ~~~~~~~~~~~-~~~~~~~-~~y~~~~~---------~~~~~~~~~~~~~i~gg~l~~~Y~l~q~HfHwG-----gSEHt 71 (239)
+|+.|...... ...+.|+ +.|.+..+ +++.+..+...+.+.||+|..+|+|.||||||| ||||+
T Consensus 5 SPIdI~~~~~~~~~~l~~l~~~y~~~~~~~l~N~Ghtv~v~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~~gSEH~ 84 (236)
T cd03118 5 SPINIQWRDSVYDPQLAPLRVSYDPATCLYIWNNGYSFQVEFDDSTDKSGISGGPLENHYRLKQFHFHWGANNEWGSEHT 84 (236)
T ss_pred CCeeEecCceeECCCCCceEEecCCCCceEEEECCEEEEEEecCCCCceEEecCCCCCcEEEEEEEEEECCCCCCCCceE
Confidence 45555433221 2345666 78876433 224444434467899999999999999999999 99999
Q ss_pred ccCccccceEEEEEeec-CCCChhhhhcCCCceEEEEEEEeeCCCCCCCccccccccCCCCcccccccchhhhhHHHhhh
Q psy12959 72 FNGQRLATEVHLVHYNS-QYESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQM 150 (239)
Q Consensus 72 idG~~~~~E~HiVh~~~-~y~~~~eA~~~~~glaVlavf~~~~~~~n~~l~~~~~~~~~~~~~~~~~c~r~~~~~~~~~~ 150 (239)
|||++|||||||||++. +|.++++|...++++||||||++++. +|+.++
T Consensus 85 idg~~~p~E~HlVH~n~~~y~~~~~A~~~~~~laVvgv~~~~g~-~n~~l~----------------------------- 134 (236)
T cd03118 85 VDGHTYPAELHLVHWNSVKYENFEEAVMEENGLAVIGVFLKLGA-HHEGLQ----------------------------- 134 (236)
T ss_pred ECCEeccceeeEEEEcccccCCHHHHhcCCCCeEEEEEEEEecC-cCccHH-----------------------------
Confidence 99999999999999998 79999999999999999999999994 577776
Q ss_pred cccccCCCCCCCchhhHHHHhcccCCCCCCeeEcCCCCCCCCcCCCCCCCcEEEeecccCCCCCCceEEEEeCeeeecCH
Q psy12959 151 SSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPCSESVEWTVLYRTVGASR 230 (239)
Q Consensus 151 ~~~~~~~~~~~~~l~~i~~~l~~~i~~~g~~~~i~~~~~l~~Llp~~~~~yy~Y~GSLTTPPCsE~V~WiV~~~pi~IS~ 230 (239)
++++.+ ..+..+++...+.. |++.+|||.+ .+||+|.||||||||+|+|+|+||++|+.||.
T Consensus 135 ---------------~i~~~l-~~i~~~~~~~~~~~-~~~~~llp~~-~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~is~ 196 (236)
T cd03118 135 ---------------KLVDAL-PEVRHKDTVVEFNP-FDPSCLLPAC-RDYWTYPGSLTTPPLTESVTWIIQKQPIEVSP 196 (236)
T ss_pred ---------------HHHHHH-HhcCcCCceeeecC-CCHHHHcccC-CCEEEecCcccCCCCcCceEEEEeCccccCCH
Confidence 788888 77777777666654 9999999988 48999999999999999999999999999999
Q ss_pred HHHhCccC
Q psy12959 231 TQVSNPIG 238 (239)
Q Consensus 231 ~Ql~~~~~ 238 (239)
+||++|+.
T Consensus 197 ~Ql~~fr~ 204 (236)
T cd03118 197 SQLSVFRT 204 (236)
T ss_pred HHHHHHHH
Confidence 99998863
No 3
>cd03119 alpha_CA_I_II_III_XIII Carbonic anhydrase alpha, isozymes I, II, and III and XIII. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozymes I, II, and III, which are cytoplasmic enzymes. CA I, for example, is expressed in erythrocyes of many vertebrates; CA II is the most active cytosolic isozyme; while it is being expressed nearly ubiquitously, it comprises 95% of the renal carbonic anhydrase and is required for renal acidification; C
Probab=100.00 E-value=2.4e-50 Score=360.09 Aligned_cols=170 Identities=41% Similarity=0.692 Sum_probs=148.2
Q ss_pred cCCCCc-ccccCCce---------EEEEEcCCCCeeEEeccCCCCceeeeEEEEeec-----CCcccccCccccceEEEE
Q psy12959 20 HSLIPL-FSYFPFCA---------VVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLV 84 (239)
Q Consensus 20 ~~~~~~-~~y~~~~~---------~~~~~~~~~~~~~i~gg~l~~~Y~l~q~HfHwG-----gSEHtidG~~~~~E~HiV 84 (239)
.++.|+ +.|.+..+ +.+.+.++...+.++||+|..+|+|.||||||| ||||+|||++||||||||
T Consensus 42 ~~l~~l~~~y~~~~~~~l~N~G~tv~~~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~~gSEH~idg~~~p~E~HlV 121 (259)
T cd03119 42 PSLKPLSVSYDPATAKTILNNGHSFNVEFDDTDDRSVLRGGPLTGSYRLRQFHFHWGSSDDHGSEHTVDGVKYAAELHLV 121 (259)
T ss_pred CCCCceecccccCcceEEEeCCeeEEEEeCCCCCcceEeCCCCCCcEEEEEEEEEeCCCCCCCccceecCccccceEEEE
Confidence 345666 78876433 234554444568899999999999999999998 999999999999999999
Q ss_pred EeecCCCChhhhhcCCCceEEEEEEEeeCCCCCCCccccccccCCCCcccccccchhhhhHHHhhhcccccCCCCCCCch
Q psy12959 85 HYNSQYESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPEDNPIL 164 (239)
Q Consensus 85 h~~~~y~~~~eA~~~~~glaVlavf~~~~~~~n~~l~~~~~~~~~~~~~~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~l 164 (239)
|++.+|.++.||...++++||||||++++. +|++++
T Consensus 122 H~n~~y~~~~~A~~~~~glaVvgvl~~~g~-~n~~l~------------------------------------------- 157 (259)
T cd03119 122 HWNSKYGSFGEAAKQPDGLAVVGVFLKVGE-ANPELQ------------------------------------------- 157 (259)
T ss_pred EecccCCCHHHHhcCCCCeEEEEEEEEecc-cchhHH-------------------------------------------
Confidence 999999999999999999999999999984 788777
Q ss_pred hhHHHHhcccCCCCCCeeEcCCCCCCCCcCCCCCCCcEEEeecccCCCCCCceEEEEeCeeeecCHHHHhCcc
Q psy12959 165 APLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPCSESVEWTVLYRTVGASRTQVSNPI 237 (239)
Q Consensus 165 ~~i~~~l~~~i~~~g~~~~i~~~~~l~~Llp~~~~~yy~Y~GSLTTPPCsE~V~WiV~~~pi~IS~~Ql~~~~ 237 (239)
+|++.+ ..|..+++...+.. |++.+|||.+. +||+|.||||||||+|+|+|+||++|+.||.+||++|+
T Consensus 158 -~i~~~l-~~i~~~~~~~~~~~-~~l~~llp~~~-~yy~Y~GSLTTPpC~E~V~W~V~~~~i~is~~Ql~~fr 226 (259)
T cd03119 158 -KVLDAL-DSIKTKGKQAPFTN-FDPSCLLPASL-DYWTYPGSLTTPPLLECVTWIVLKEPISVSSEQMAKFR 226 (259)
T ss_pred -HHHHHH-HHhccCCceeeecC-CCHHHHcCCCC-CeEEeccccCCCCCCCceEEEEeCCeeeCCHHHHHHHH
Confidence 788888 77777777776655 99999999875 89999999999999999999999999999999999886
No 4
>KOG0382|consensus
Probab=100.00 E-value=3.4e-50 Score=359.51 Aligned_cols=157 Identities=45% Similarity=0.797 Sum_probs=146.5
Q ss_pred EEEEcCCCCeeEEeccCCCC-ceeeeEEEEeec-----CCcccccCccccceEEEEEeecCCCChhhhhcCCCceEEEEE
Q psy12959 35 VLKLDQNEKEIGIAAGGLYN-YYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHYNSQYESLTEAKDEPRGLAVIAV 108 (239)
Q Consensus 35 ~~~~~~~~~~~~i~gg~l~~-~Y~l~q~HfHwG-----gSEHtidG~~~~~E~HiVh~~~~y~~~~eA~~~~~glaVlav 108 (239)
.+.++.+.+.+.|+||+|.. .|++.|+||||| ||||||||++|+|||||||+|.+|.+++||++.++|+|||||
T Consensus 69 ~v~~~~~~~~~~i~gg~l~~~~y~~~q~hfHWg~~~~~GSEHti~g~~f~~ElHlVH~n~~y~~~~eA~~~p~GlAVv~v 148 (262)
T KOG0382|consen 69 GVDIMLKGGKPEITGGPLPGIRYRLEQLHFHWGSPDSKGSEHTINGRRFPAELHLVHWNTKYENFKEALSKPDGLAVVGV 148 (262)
T ss_pred EEEeecCCCCcceecCCCCCcceeEEEeEeecCCCCCCCCceecCCeecccEEEEEEeccccCCHHHHhcCCCcEEEEEE
Confidence 35666666689999999988 899999999999 899999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCccccccccCCCCcccccccchhhhhHHHhhhcccccCCCCCCCchhhHHHHhcccCCCCCCeeEcCCCC
Q psy12959 109 IIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPL 188 (239)
Q Consensus 109 f~~~~~~~n~~l~~~~~~~~~~~~~~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~i~~~g~~~~i~~~~ 188 (239)
|+++|+..|++++ ++++.| ..|.++|+.+.+++ |
T Consensus 149 f~k~g~~~n~~l~--------------------------------------------~l~~~L-~~I~~k~~~~~l~~-f 182 (262)
T KOG0382|consen 149 FLKIGKEENPFLS--------------------------------------------KLTDAL-KRIKYKGQSTTLPG-F 182 (262)
T ss_pred eecccCCCChhHH--------------------------------------------HHHHHh-hccccCCcccccCC-C
Confidence 9999966788888 788888 99999999999998 9
Q ss_pred CCCCcCCCCCCCcEEEeecccCCCCCCceEEEEeCeeeecCHHHHhCcc
Q psy12959 189 APSDLLPANRSAFFRYSGSLTTPPCSESVEWTVLYRTVGASRTQVSNPI 237 (239)
Q Consensus 189 ~l~~Llp~~~~~yy~Y~GSLTTPPCsE~V~WiV~~~pi~IS~~Ql~~~~ 237 (239)
+++.|||....+||+|.||||||||+|+|+|+|+++|+.||.+||.+|.
T Consensus 183 ~~~~llp~~~~~y~tY~GSLTTPPC~E~VtW~V~~~p~~is~~Ql~~~r 231 (262)
T KOG0382|consen 183 DPSELLPKSTRDYYTYEGSLTTPPCSESVTWTVFREPVTVSREQLEKFR 231 (262)
T ss_pred CHHHhcCccCCceEEEEeeccCCCCCCCEEEEEcCceeecCHHHHHHHH
Confidence 9999999965699999999999999999999999999999999999875
No 5
>cd03121 alpha_CARP_X_XI_like Carbonic anhydrase alpha related protein: groups X, XI and related proteins. This subgroup contains carbonic anhydrase related proteins (CARPs) X and XI, which have been implicated in various biological processes of the central nervous system. CARPs are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP XI plays a role in the development of gastrointestinal stromal tumors.
Probab=100.00 E-value=5.9e-50 Score=357.06 Aligned_cols=170 Identities=34% Similarity=0.579 Sum_probs=146.1
Q ss_pred cCCCCc-cccc-CCce--------EEEEEcCCCCeeEEeccCCCCceeeeEEEEeec-----CCcccccCccccceEEEE
Q psy12959 20 HSLIPL-FSYF-PFCA--------VVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLV 84 (239)
Q Consensus 20 ~~~~~~-~~y~-~~~~--------~~~~~~~~~~~~~i~gg~l~~~Y~l~q~HfHwG-----gSEHtidG~~~~~E~HiV 84 (239)
..+.|+ +.|. +... +.+++.. +..++|+||+|..+|+|.||||||| ||||+|||++||||||||
T Consensus 35 ~~l~~L~~~~~~~~~~~l~N~Ghtv~v~~~~-~~~~~i~gG~l~~~Y~l~Q~HFHwG~~~~~gSEH~idG~~yp~E~HlV 113 (256)
T cd03121 35 PFLTPLRIDTGRKVSGTFYNTGRHVSFRPDK-DPVVNISGGPLSYRYRLEEIRLHFGREDEQGSEHTVNGQAFPGEVQLI 113 (256)
T ss_pred CCCCceeeccCCCCceEEEECCEEEEEEECC-CCceEEeCCCCCCcEEEEEEEEecCCCCCCCCceeeCCcccCceEEEE
Confidence 345666 6666 4432 2244432 3458889999999999999999998 999999999999999999
Q ss_pred Eeec-CCCChhhhhcCCCceEEEEEEEeeCCCCCCCccccccccCCCCcccccccchhhhhHHHhhhcccccCCCCCCCc
Q psy12959 85 HYNS-QYESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPEDNPI 163 (239)
Q Consensus 85 h~~~-~y~~~~eA~~~~~glaVlavf~~~~~~~n~~l~~~~~~~~~~~~~~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~ 163 (239)
|++. +|.+++||.+.++++|||||||+++..+|+.++
T Consensus 114 H~n~~~y~~~~~A~~~~~glaVvgv~~~~g~~~n~~l~------------------------------------------ 151 (256)
T cd03121 114 HYNSELYPNFSEASKSPNGLVIVSLFVKIGETSNPELR------------------------------------------ 151 (256)
T ss_pred EEcccccCCHHHHhcCCCCeEEEEEEEeecccCCHHHH------------------------------------------
Confidence 9998 799999999999999999999999965677777
Q ss_pred hhhHHHHhcc--cCCCCCCeeEcCCCCCCCCcCCCCCCCcEEEeecccCCCCCCceEEEEeCeeeecCHHHHhCcc
Q psy12959 164 LAPLVSSLGE--TIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPCSESVEWTVLYRTVGASRTQVSNPI 237 (239)
Q Consensus 164 l~~i~~~l~~--~i~~~g~~~~i~~~~~l~~Llp~~~~~yy~Y~GSLTTPPCsE~V~WiV~~~pi~IS~~Ql~~~~ 237 (239)
+|++.+ . .+..+++...+.. |++.+|||.. .+||+|.||||||||+|+|+|+||++|+.||.+||++|+
T Consensus 152 --~i~~~l-~~~~i~~~~~~~~~~~-~~l~~Llp~~-~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~Is~~Ql~~fr 222 (256)
T cd03121 152 --RLTNRD-TITSIRYKGDAYFLQD-LSIELLLPET-DHYITYEGSLTSPGCHETVTWIILNKPIYITKEQMHSLR 222 (256)
T ss_pred --HHHHhc-cccccccCCceeecCC-CCHHHHCCCC-CceEEeeccccCCCCCcceEEEEeCccEecCHHHHHHHH
Confidence 788887 6 7777788777765 9999999987 489999999999999999999999999999999999885
No 6
>cd03117 alpha_CA_IV_XV_like Carbonic anhydrase alpha, CA_IV, CA_XV, like isozymes. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This subgroup, restricted to animals, contains isozyme IV and similar proteins such as mouse CA XV. Isozymes IV is attached to membranes via a glycosylphosphatidylinositol (GPI) tail. I
Probab=100.00 E-value=1.4e-49 Score=350.39 Aligned_cols=183 Identities=37% Similarity=0.623 Sum_probs=151.3
Q ss_pred Cccchhhhhhh-hcCCCCc-c-cccC--CceE------EEEEcCCCCeeEEeccCCCCceeeeEEEEeec-----CCccc
Q psy12959 8 RPGALQLLHTR-LHSLIPL-F-SYFP--FCAV------VLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG-----GSEHT 71 (239)
Q Consensus 8 ~~~~~~~~~~~-~~~~~~~-~-~y~~--~~~~------~~~~~~~~~~~~i~gg~l~~~Y~l~q~HfHwG-----gSEHt 71 (239)
+|+.|.-.... -..+.|+ + +|.+ .... .+++..++ .++|+||+|...|.|.||||||| ||||+
T Consensus 5 SPI~I~~~~~~~~~~l~~L~~~~y~~~~~~~~l~N~G~tv~v~~~~-~~~i~gg~L~~~Y~l~qfHfH~G~~~~~gSEH~ 83 (234)
T cd03117 5 SPINIVTKKVQYDENLTPFTFTGYDDTTTNWTITNNGHTVQVTLPD-GAKISGGGLPGTYKALQFHFHWGSNGSPGSEHT 83 (234)
T ss_pred CCEEEcccceEECCCCCcceeccccCCCCceEEEECCeEEEEEecC-CceEeCCCCCCcEEEEEEEEEeCCCCCCCCcce
Confidence 45655432221 1245666 5 6764 2221 13343332 68899999999999999999998 99999
Q ss_pred ccCccccceEEEEEeecCCCChhhhhcCCCceEEEEEEEeeCCCCCCCccccccccCCCCcccccccchhhhhHHHhhhc
Q psy12959 72 FNGQRLATEVHLVHYNSQYESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMS 151 (239)
Q Consensus 72 idG~~~~~E~HiVh~~~~y~~~~eA~~~~~glaVlavf~~~~~~~n~~l~~~~~~~~~~~~~~~~~c~r~~~~~~~~~~~ 151 (239)
|||++|||||||||++.+|.++.||...++++|||||||+++..+|+.++
T Consensus 84 idg~~~~~E~HlVH~n~~~~~~~~A~~~~~~laVv~vl~~~~~~~n~~l~------------------------------ 133 (234)
T cd03117 84 IDGERYPMELHIVHIKESYNSLLEALKDSDGLAVLGFFIEEGEEENTNFD------------------------------ 133 (234)
T ss_pred eCCeecchheeeeEecCCCCCHHHHhcCCCceEEEEEEEEecCCCCccHH------------------------------
Confidence 99999999999999999999999999999999999999999966677776
Q ss_pred ccccCCCCCCCchhhHHHHhcccCCCCCCeeEcCCCCCCCCcCCCCC-CCcEEEeecccCCCCCCceEEEEeCeeeecCH
Q psy12959 152 SHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANR-SAFFRYSGSLTTPPCSESVEWTVLYRTVGASR 230 (239)
Q Consensus 152 ~~~~~~~~~~~~l~~i~~~l~~~i~~~g~~~~i~~~~~l~~Llp~~~-~~yy~Y~GSLTTPPCsE~V~WiV~~~pi~IS~ 230 (239)
++++.+ ..|..+++...+.. |++.+|||... ..||+|.||||||||+|+|+|+||++|+.||.
T Consensus 134 --------------~i~~~l-~~i~~~~~~~~~~~-~~~~~llp~~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~Is~ 197 (234)
T cd03117 134 --------------PLISAL-SNIPQKGGSTNLTP-FSLRSLLPSVLLTKYYRYNGSLTTPGCNEAVIWTVFEEPIPISR 197 (234)
T ss_pred --------------HHHHHH-HhcccCCceeecCC-CCHHHHCCCcccCCeEEEeccccCCCCcccEEEEEeCCceecCH
Confidence 788888 77877777777765 99999999863 58999999999999999999999999999999
Q ss_pred HHHhCcc
Q psy12959 231 TQVSNPI 237 (239)
Q Consensus 231 ~Ql~~~~ 237 (239)
+||++|+
T Consensus 198 ~Ql~~fr 204 (234)
T cd03117 198 AQLDAFS 204 (234)
T ss_pred HHHHHHH
Confidence 9999886
No 7
>cd03122 alpha_CARP_receptor_like Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. This sub-family of carbonic anhydrase-related domains found in tyrosine phosphatase receptors may play a role in cell adhesion.
Probab=100.00 E-value=2.3e-49 Score=352.68 Aligned_cols=156 Identities=37% Similarity=0.714 Sum_probs=140.7
Q ss_pred EEEcCCCCeeEEeccCCCCceeeeEEEEeec-----CCcccccCccccceEEEEEeecCCCChhhhhcCCCceEEEEEEE
Q psy12959 36 LKLDQNEKEIGIAAGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHYNSQYESLTEAKDEPRGLAVIAVII 110 (239)
Q Consensus 36 ~~~~~~~~~~~i~gg~l~~~Y~l~q~HfHwG-----gSEHtidG~~~~~E~HiVh~~~~y~~~~eA~~~~~glaVlavf~ 110 (239)
|.+..++..++|+||+|..+|+|.||||||| ||||+|||++|||||||||++.+|.+..||.+.++++|||||||
T Consensus 60 v~~~~~~~~~~i~gg~l~~~Y~l~q~HFHwG~~~~~gSEH~idg~~yp~E~H~VH~n~~~~~~~~A~~~~~~laVv~vl~ 139 (253)
T cd03122 60 LRLEGNSSDPFVSGGPLLGRYKFSEITFHWGTCNSDGSEHSIDGHKFPLEMQILHRNTDFFDSFEAIKSPGGVLALAYLF 139 (253)
T ss_pred EEecCCCCceEEeCCCCCCcEEEEEEEEEeCCCCCCCCceeecCccCcceEEEEEEcCCCCCHHHHhhcCCCeEEEEEEE
Confidence 4444444679999999999999999999998 99999999999999999999999888889999999999999999
Q ss_pred eeCCCCCCCccccccccCCCCcccccccchhhhhHHHhhhcccccCCCCCCCchhhHHHHhcccCCCCCCeeEcCCCCCC
Q psy12959 111 HETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAP 190 (239)
Q Consensus 111 ~~~~~~n~~l~~~~~~~~~~~~~~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~i~~~g~~~~i~~~~~l 190 (239)
++++.+|++++ ++++.+ ..+..+++...+.. |++
T Consensus 140 ~~g~~~n~~l~--------------------------------------------~i~~~l-~~i~~~~~~~~~~~-~~l 173 (253)
T cd03122 140 ELSHEDNPFLD--------------------------------------------PIIEGL-RNVSRPGKEVELPP-FPL 173 (253)
T ss_pred EEecCCCHhHH--------------------------------------------HHHHHH-HhcCCCCcEEEcCC-CCH
Confidence 99966788777 888888 77877888777765 999
Q ss_pred CCcCCCCCCCcEEEeecccCCCCCCceEEEEeCeeeecCHHHHhCcc
Q psy12959 191 SDLLPANRSAFFRYSGSLTTPPCSESVEWTVLYRTVGASRTQVSNPI 237 (239)
Q Consensus 191 ~~Llp~~~~~yy~Y~GSLTTPPCsE~V~WiV~~~pi~IS~~Ql~~~~ 237 (239)
.+|||.+..+||+|.||||||||+|+|+|+||++|+.||.+||++|+
T Consensus 174 ~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~fr 220 (253)
T cd03122 174 SDLLPPFTDKYYSYEGSLTTPPCSETVEWIVFREPVPISSRQLEAFR 220 (253)
T ss_pred HHHhccccCCeEEEeeeccCCCCcCceEEEEeCceeecCHHHHHHHH
Confidence 99999864589999999999999999999999999999999999885
No 8
>cd03150 alpha_CA_IX Carbonic anhydrase alpha, isozyme IX. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are strictly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane protein CA IX. CA IX is functionally implicated in tumor growth and survival. CA IX is mainly present in solid tumors and its expression in normal tissues is limited t
Probab=100.00 E-value=4.1e-49 Score=350.08 Aligned_cols=147 Identities=41% Similarity=0.696 Sum_probs=133.6
Q ss_pred eeEEeccCCCCceeeeEEEEeec-----CCcccccCccccceEEEEEeecCCCChhhhhcCCCceEEEEEEEeeCCCCCC
Q psy12959 44 EIGIAAGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHYNSQYESLTEAKDEPRGLAVIAVIIHETPEDNP 118 (239)
Q Consensus 44 ~~~i~gg~l~~~Y~l~q~HfHwG-----gSEHtidG~~~~~E~HiVh~~~~y~~~~eA~~~~~glaVlavf~~~~~~~n~ 118 (239)
...++||+ +.+|+|.||||||| ||||+|||++|||||||||++.+|.+++||.+.++++||||||++++..+|+
T Consensus 65 ~~~~~~g~-~~~Y~l~QfHfHwG~~~~~gSEH~idg~~yp~E~HlVH~n~~y~~~~~A~~~~~glaVl~v~~~~g~~~n~ 143 (247)
T cd03150 65 GLRMALGP-GQEYRALQLHLHWGAAGRPGSEHTVDGHRFPAEIHVVHLSTAFANLDEALGRPGGLAVLAAFLAEGLHENS 143 (247)
T ss_pred ccccccCC-CCcEEEEEEEEEeCCCCCCCcceeeCCcccchhhheeeecccCCCHHHHhcCCCCcEEEEEEEEecCCCCH
Confidence 35677776 68999999999998 9999999999999999999999999999999999999999999999965777
Q ss_pred CccccccccCCCCcccccccchhhhhHHHhhhcccccCCCCCCCchhhHHHHhcccCCCCCCeeEcCCCCCCCCcCCCCC
Q psy12959 119 ILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANR 198 (239)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~i~~~g~~~~i~~~~~l~~Llp~~~ 198 (239)
.++ .|++.+ ..|..+++...+.. |++.+|||.+.
T Consensus 144 ~l~--------------------------------------------~i~~~l-~~i~~~~~~~~~~~-~~l~~llp~~~ 177 (247)
T cd03150 144 AYE--------------------------------------------QLLSRL-SEISEEESETVVPG-LDVSALLPSDL 177 (247)
T ss_pred HHH--------------------------------------------HHHHHH-HhhCCCCceeecCC-CCHHHHcCccc
Confidence 777 788888 77777777776765 99999999875
Q ss_pred CCcEEEeecccCCCCCCceEEEEeCeeeecCHHHHhCcc
Q psy12959 199 SAFFRYSGSLTTPPCSESVEWTVLYRTVGASRTQVSNPI 237 (239)
Q Consensus 199 ~~yy~Y~GSLTTPPCsE~V~WiV~~~pi~IS~~Ql~~~~ 237 (239)
..||+|.||||||||+|+|+|+||++|+.||.+||++|+
T Consensus 178 ~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~is~~Ql~~fr 216 (247)
T cd03150 178 SRYFRYEGSLTTPPCAQGVIWTVFNQTVRLSAKQLHTLS 216 (247)
T ss_pred CCEEEEeeeccCCCCCCceEEEEeCceeecCHHHHHHHH
Confidence 579999999999999999999999999999999999986
No 9
>cd03126 alpha_CA_XII_XIV Carbonic anhydrase alpha, isozymes XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane proteins CA XII and XIV.
Probab=100.00 E-value=5.6e-49 Score=349.53 Aligned_cols=141 Identities=40% Similarity=0.737 Sum_probs=128.6
Q ss_pred cCCCCceeeeEEEEeec------CCcccccCccccceEEEEEeec-CCCChhhhhcCCCceEEEEEEEeeCCCCCCCccc
Q psy12959 50 GGLYNYYILDSIHFHWG------GSEHTFNGQRLATEVHLVHYNS-QYESLTEAKDEPRGLAVIAVIIHETPEDNPILAP 122 (239)
Q Consensus 50 g~l~~~Y~l~q~HfHwG------gSEHtidG~~~~~E~HiVh~~~-~y~~~~eA~~~~~glaVlavf~~~~~~~n~~l~~ 122 (239)
++|..+|+|.||||||| ||||+|||++|||||||||++. +|.+++||...++++||||||++++. .|+.++
T Consensus 69 ~~l~~~Y~l~qfHfHwG~~~~~~gSEH~idG~~y~~E~HlVH~n~~~y~~~~~A~~~~~glaVl~v~~~~g~-~n~~~~- 146 (249)
T cd03126 69 GGLPFKYTASQLHLHWGQRGSPEGSEHTISGKHFAAELHIVHYNSDKYPDISTAMNKSQGLAVLGILIEVGP-FNPSYE- 146 (249)
T ss_pred cCCCccEEEEEEEEEeCCCCCCCCceeeecCcccCceEEEEEecCccCCCHHHHhhcCCCeEEEEEEEEecC-CChhHH-
Confidence 45668999999999997 8999999999999999999998 79999999999999999999999984 677776
Q ss_pred cccccCCCCcccccccchhhhhHHHhhhcccccCCCCCCCchhhHHHHhcccCCCCCCeeEcCCCCCCCCcCCCCCCCcE
Q psy12959 123 LVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFF 202 (239)
Q Consensus 123 ~~~~~~~~~~~~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~i~~~g~~~~i~~~~~l~~Llp~~~~~yy 202 (239)
.|++.+ ..+..+++...++. |++.+|||.+...||
T Consensus 147 -------------------------------------------~i~~~l-~~i~~~~~~~~~~~-~~l~~llp~~~~~yy 181 (249)
T cd03126 147 -------------------------------------------KIFSHL-HEVKYKDQKVSVPG-FNVQELLPKRLDEYY 181 (249)
T ss_pred -------------------------------------------HHHHHh-hhcccCCceeEcCC-CCHHHhCccccCCeE
Confidence 788888 77777777777765 999999998755799
Q ss_pred EEeecccCCCCCCceEEEEeCeeeecCHHHHhCcc
Q psy12959 203 RYSGSLTTPPCSESVEWTVLYRTVGASRTQVSNPI 237 (239)
Q Consensus 203 ~Y~GSLTTPPCsE~V~WiV~~~pi~IS~~Ql~~~~ 237 (239)
+|.||||||||+|+|+|+||++|+.||.+||++|+
T Consensus 182 ~Y~GSLTTPpC~E~V~W~V~~~pi~is~~Ql~~fr 216 (249)
T cd03126 182 RYEGSLTTPPCYPSVLWTVFRNPVQISQEQLLALE 216 (249)
T ss_pred EEeccCcCCCCcCceEEEEeCCceecCHHHHHHHH
Confidence 99999999999999999999999999999999886
No 10
>cd03120 alpha_CARP_VIII Carbonic anhydrase alpha related protein, group VIII. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP VIII may play roles in various biological processes of the central nervous system, and could be involved in protein-protein interactions. CARP VIII has been shown to bind inositol 1,4,5-triphosphate (IP3) receptor type I (IP3RI), reducing the affinity of the receptor for IP3. IP3RI is an intracellular IP3-gated Ca2+ channel located on intracellular Ca2+ stores. IP3RI converts IP3 signaling into Ca2+ signaling thereby participating in a variety of cell functions.
Probab=100.00 E-value=1.2e-48 Score=348.76 Aligned_cols=183 Identities=33% Similarity=0.578 Sum_probs=148.3
Q ss_pred CCccchhhhhhhh-cCCC--Cc-ccccCCceEE-------EEEcCCCCeeEEeccCCC--CceeeeEEEEeec-----CC
Q psy12959 7 SRPGALQLLHTRL-HSLI--PL-FSYFPFCAVV-------LKLDQNEKEIGIAAGGLY--NYYILDSIHFHWG-----GS 68 (239)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~--~~-~~y~~~~~~~-------~~~~~~~~~~~i~gg~l~--~~Y~l~q~HfHwG-----gS 68 (239)
-+|+.|....... ..+. ++ +.|.+...+. +++..++ .+.+.||+|. ..|+|.||||||| ||
T Consensus 16 QSPInI~~~~~~~~~~~~~~~l~~~y~~~~~~~l~N~Ghtv~v~~~~-~~~~~gg~l~~~~~Y~l~q~HFHwG~~~~~gS 94 (256)
T cd03120 16 QSPINLNSREARYDPSLLEVRLSPNYVVCRDCEVINDGHTIQIILKS-KSVLSGGPLPQGHEFELAEVRFHWGRENQRGS 94 (256)
T ss_pred CCCccCccCceEECCCCCcccceeccCCCCceEEEECCeEEEEEeCC-CceeecCCCCCCceEEEEEEEEEeCCCCCCCC
Confidence 3566555433222 2333 34 6776543221 3444332 3788999994 6999999999998 89
Q ss_pred cccccCccccceEEEEEeec-CCCChhhhhcCCCceEEEEEEEeeCCCCCCCccccccccCCCCcccccccchhhhhHHH
Q psy12959 69 EHTFNGQRLATEVHLVHYNS-QYESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTIL 147 (239)
Q Consensus 69 EHtidG~~~~~E~HiVh~~~-~y~~~~eA~~~~~glaVlavf~~~~~~~n~~l~~~~~~~~~~~~~~~~~c~r~~~~~~~ 147 (239)
||+|||++|||||||||++. .|.+++||...++++||||||++++. +|+.++
T Consensus 95 EH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~g~-~n~~l~-------------------------- 147 (256)
T cd03120 95 EHTVNFKAFPMELHLIHWNSTLYSSLEEAMGKPHGIAIIALFVQIGK-EHVGLK-------------------------- 147 (256)
T ss_pred ceeecCccccceEEEEEecCcccCCHHHHhcCCCceEEEEEEEeecC-CCHhHH--------------------------
Confidence 99999999999999999998 69999999999999999999999984 577766
Q ss_pred hhhcccccCCCCCCCchhhHHHHhcccCCCCCCeeEcCCCCCCCCcCCCC-CCCcEEEeecccCCCCCCceEEEEeCeee
Q psy12959 148 LQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPAN-RSAFFRYSGSLTTPPCSESVEWTVLYRTV 226 (239)
Q Consensus 148 ~~~~~~~~~~~~~~~~l~~i~~~l~~~i~~~g~~~~i~~~~~l~~Llp~~-~~~yy~Y~GSLTTPPCsE~V~WiV~~~pi 226 (239)
.|++.+ ..|..+++...++. |++.+|||.. ..+||+|.||||||||+|+|+|+||++|+
T Consensus 148 ------------------~i~~~l-~~i~~~~~~~~~~~-~~~~~llp~~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi 207 (256)
T cd03120 148 ------------------AVTEIL-QDIQYKGKSKTIPC-FNPNTLLPDPLLRDYWVYEGSLTTPPCSEGVTWILFRYPL 207 (256)
T ss_pred ------------------HHHHHh-HhhccCCceeeecC-CCHHHHCCCcCcCCeEEEeeecCCCCCCCCeEEEEeCCee
Confidence 788888 77877777777765 9999999975 35899999999999999999999999999
Q ss_pred ecCHHHHhCcc
Q psy12959 227 GASRTQVSNPI 237 (239)
Q Consensus 227 ~IS~~Ql~~~~ 237 (239)
.||.+||++|+
T Consensus 208 ~IS~~Ql~~fr 218 (256)
T cd03120 208 TISQSQIEEFR 218 (256)
T ss_pred ecCHHHHHHHH
Confidence 99999999885
No 11
>cd03125 alpha_CA_VI Carbonic anhydrase alpha, isozyme VI. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva.
Probab=100.00 E-value=3.1e-48 Score=344.85 Aligned_cols=146 Identities=43% Similarity=0.752 Sum_probs=131.4
Q ss_pred eEEeccCCCCceeeeEEEEeec-------CCcccccCccccceEEEEEeecCCCChhhhhcCCCceEEEEEEEeeCC-CC
Q psy12959 45 IGIAAGGLYNYYILDSIHFHWG-------GSEHTFNGQRLATEVHLVHYNSQYESLTEAKDEPRGLAVIAVIIHETP-ED 116 (239)
Q Consensus 45 ~~i~gg~l~~~Y~l~q~HfHwG-------gSEHtidG~~~~~E~HiVh~~~~y~~~~eA~~~~~glaVlavf~~~~~-~~ 116 (239)
..++|| ++.+|+|.||||||| ||||+|||++|||||||||++.+|.++.||...++++||||||++++. .+
T Consensus 65 ~~~~~~-~~~~Y~l~q~HFHWG~~~~~~~gSEH~idG~~yp~E~HlVH~n~~y~~~~~a~~~~~glaVl~v~~~~~~~~~ 143 (249)
T cd03125 65 MSITTG-DGTVYTAVQMHFHWGGRDSEISGSEHTIDGMRYVAELHIVHYNSKYKSYEEAKDKPDGLAVLAFLYKVGHYAE 143 (249)
T ss_pred cccccC-CCCCEEEEEEEEEecCCCCCCCCccceeccccCCceEEEEEecCCCCCHHHHhcCCCceEEEEEEEEeccCcC
Confidence 345554 578999999999997 799999999999999999999999999999999999999999999995 36
Q ss_pred CCCccccccccCCCCcccccccchhhhhHHHhhhcccccCCCCCCCchhhHHHHhcccCCCCCCeeEcCCCCCCCCcCCC
Q psy12959 117 NPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPA 196 (239)
Q Consensus 117 n~~l~~~~~~~~~~~~~~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~i~~~g~~~~i~~~~~l~~Llp~ 196 (239)
|+.++ .|++.+ ..|..+++...+.. |++.+|||.
T Consensus 144 n~~~~--------------------------------------------~i~~~l-~~i~~~~~~~~~~~-~~~~~llp~ 177 (249)
T cd03125 144 NTYYS--------------------------------------------DFISKL-AKIKYAGQTTTLTS-LDVRDMLPE 177 (249)
T ss_pred CccHH--------------------------------------------HHHHHH-hhcccCCceeecCC-CCHHHhCCc
Confidence 88777 788888 77777788777764 999999998
Q ss_pred CCCCcEEEeecccCCCCCCceEEEEeCeeeecCHHHHhCcc
Q psy12959 197 NRSAFFRYSGSLTTPPCSESVEWTVLYRTVGASRTQVSNPI 237 (239)
Q Consensus 197 ~~~~yy~Y~GSLTTPPCsE~V~WiV~~~pi~IS~~Ql~~~~ 237 (239)
+..+||+|.||||||||+|+|+|+||++|+.||.+||++|+
T Consensus 178 ~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~fr 218 (249)
T cd03125 178 NLHHYYTYQGSLTTPPCTENVLWFVFDDPVTLSKTQIVKLE 218 (249)
T ss_pred CcCCeEEEeccCcCCCCCCceEEEEeCCceecCHHHHHHHH
Confidence 75579999999999999999999999999999999999986
No 12
>PF00194 Carb_anhydrase: Eukaryotic-type carbonic anhydrase; InterPro: IPR001148 Carbonic anhydrases (CA: 4.2.1.1 from EC) are zinc metalloenzymes which catalyse the reversible hydration of carbon dioxide to bicarbonate [, ]. CAs have essential roles in facilitating the transport of carbon dioxide and protons in the intracellular space, across biological membranes and in the layers of the extracellular space; they are also involved in many other processes, from respiration and photosynthesis in eukaryotes to cyanate degradation in prokaryotes. There are five known evolutionarily distinct CA families (alpha, beta, gamma, delta and epsilon) that have no significant sequence identity and have structurally distinct overall folds. Some CAs are membrane-bound, while others act in the cytosol; there are several related proteins that lack enzymatic activity. The active site of alpha-CAs is well described, consisting of a zinc ion coordinated through 3 histidine residues and a water molecule/hydroxide ion that acts as a potent nucleophile. The enzyme employs a two-step mechanism: in the first step, there is a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide; in the second step, the active site is regenerated by the ionisation of the zinc-bound water molecule and the removal of a proton from the active site []. Beta- and gamma-CAs also employ a zinc hydroxide mechanism, although at least some beta-class enzymes do not have water directly coordinated to the metal ion. The alpha-CAs are found predominantly in animals but also in bacteria and green algae. There are at least 15 isoforms found in mammals, which can be subdivided into cytosolic CAs (CA-I, CA-II, CA-III, CA-VII and CA XIII), mitochondrial CAs (CA-VA and CA-VB), secreted CAs (CA-VI), membrane-associated (CA-IV, CA-IX, CA-XII and CA-XIV) and those without CA activity, the CA-related proteins (CA-RP VIII, X and XI). The beta-CAs are highly abundant in plants, diatoms, eubacteria and archaea [, ]. The beta-CAs are far more diverse in sequence than other classes, and can be divided into different clades based on sequence identity, with the plant enzymes forming two clades representing dicotyledonous and monocotyledonous plants. Characterisation of these enzymes reveals sharp differences between the beta class, which forms dimers, tetramers, hexamers and octomers, and the alpha and gamma classes, which form strictly monomers and trimers. The gamma-CAs may be the most ancient form of carbonic anhydrases, having evolved long before the alpha class, to which it is more closely related than to the beta-class [, ]. The reaction mechanism of the gamma-class is similar to that of the alpha-class, even though the overall folds are dissimilar and the active site residues differ. The delta-CAs are found in marine algae and dinoflagellates []. The epsilon-CAs are found in prokaryotes such as Thiobacillus neapolitanus (Halothiobacillus neapolitanus) in which it is a component of the carboxysome shell, where it could supply the active sites of RuBisCO in the carboxysome with the high concentrations of carbon dioxide necessary for optimal RuBisCO activity and efficient carbon fixation []. This entry represents a domain found in alpha class carbonic anhydrases. More information about these proteins can be found at Protein of the Month: Carbonic Anhydrase [].; PDB: 3FE4_A 2W2J_A 3B1B_B 2HFW_A 1Z93_A 1Z97_A 3UYQ_A 3UYN_A 1JD0_B 1JCZ_B ....
Probab=100.00 E-value=4e-48 Score=344.29 Aligned_cols=183 Identities=42% Similarity=0.742 Sum_probs=151.1
Q ss_pred Cccchhhhhhhh-cCCCCc-ccccCCce---------EEEEEcCCCCeeEEeccCCCCceeeeEEEEeec-----CCccc
Q psy12959 8 RPGALQLLHTRL-HSLIPL-FSYFPFCA---------VVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG-----GSEHT 71 (239)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~-~~y~~~~~---------~~~~~~~~~~~~~i~gg~l~~~Y~l~q~HfHwG-----gSEHt 71 (239)
+|+-|....... ..+.++ ++|.+... +.+.+++....++|.||+|...|+|.||||||| ||||+
T Consensus 25 SPInI~~~~~~~~~~l~~l~~~~~~~~~~~~~N~G~tv~v~~~~~~~~~~i~g~~l~~~Y~l~q~HfHwg~~~~~gSEH~ 104 (256)
T PF00194_consen 25 SPININTSEAVYDPSLPPLKFSYYESSAGTLKNNGHTVQVNFDDTNNKPTISGGPLPGEYRLEQFHFHWGSDNSSGSEHT 104 (256)
T ss_dssp S-BEE-GGGSEEETTSEEEEEESTTSGEEEEEE-SSSEEEEECTSSSSSEEEETTESSEEEEEEEEEEESSSTTSSSSSE
T ss_pred CCEeeCcCccccccCCCCcEEeeccccceEEEecCceEEEEeCCCcccceecCCCccceEEEEEEEEecccCCCCccccc
Confidence 444444433222 344556 67776543 346666655678999999999999999999998 89999
Q ss_pred ccCccccceEEEEEee-cCCCChhhhhcCCCceEEEEEEEeeCCCCCCCccccccccCCCCcccccccchhhhhHHHhhh
Q psy12959 72 FNGQRLATEVHLVHYN-SQYESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQM 150 (239)
Q Consensus 72 idG~~~~~E~HiVh~~-~~y~~~~eA~~~~~glaVlavf~~~~~~~n~~l~~~~~~~~~~~~~~~~~c~r~~~~~~~~~~ 150 (239)
|||++||||||+||++ .+|.+++||...++++||||||++++ +.|+.++
T Consensus 105 idG~~y~~E~H~Vh~~~~~y~~~~~a~~~~~~laVl~v~~~~~-~~n~~l~----------------------------- 154 (256)
T PF00194_consen 105 IDGKRYPMEMHFVHRNSKKYSSFEEASKEPDGLAVLGVFFEIG-ESNPFLQ----------------------------- 154 (256)
T ss_dssp ETTBE-SEEEEEEEEETTTGSSHHHHTTSTTSEEEEEEEEEES-S--GHHH-----------------------------
T ss_pred hhhhhcccceeeeeeccccccchhhhhhccccceEEEEEeecc-ccccccc-----------------------------
Confidence 9999999999999999 69999999999999999999999999 6788777
Q ss_pred cccccCCCCCCCchhhHHHHhcccCCCCCCeeEcCCCCCCCCcCCCCCCCcEEEeecccCCCCCCceEEEEeCeeeecCH
Q psy12959 151 SSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPCSESVEWTVLYRTVGASR 230 (239)
Q Consensus 151 ~~~~~~~~~~~~~l~~i~~~l~~~i~~~g~~~~i~~~~~l~~Llp~~~~~yy~Y~GSLTTPPCsE~V~WiV~~~pi~IS~ 230 (239)
.|++.| ..+..+++.+.+.. |++++|||.. ..||+|.||||||||+|+|+|+||++|+.||+
T Consensus 155 ---------------~i~~~l-~~i~~~~~~~~~~~-~~l~~llp~~-~~yy~Y~GSLTtPpCtE~V~W~V~~~pi~is~ 216 (256)
T PF00194_consen 155 ---------------PILDAL-PNIPYPGSSTPIQS-FSLSDLLPST-RSYYRYNGSLTTPPCTEGVTWIVFKEPIPISQ 216 (256)
T ss_dssp ---------------HHHHHG-GGGTSTTEEEEEES-BBGGGGSCSS-SSEEEEEEE-SSTTSSSEEEEEEESSEEEEEH
T ss_pred ---------------hhhhhh-hhcccccccccccc-ccccccCCCC-CCEEEEcccccCCCcceeEEEEEeeeEEEEeH
Confidence 788888 88888888888865 9999999995 59999999999999999999999999999999
Q ss_pred HHHhCccC
Q psy12959 231 TQVSNPIG 238 (239)
Q Consensus 231 ~Ql~~~~~ 238 (239)
+||++|+.
T Consensus 217 ~Ql~~f~~ 224 (256)
T PF00194_consen 217 DQLNKFRK 224 (256)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998863
No 13
>cd03123 alpha_CA_VI_IX_XII_XIV Carbonic anhydrase alpha, isozymes VI, IX, XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are mostly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva, for example, and the membrane proteins CA IX, XII, and XIV.
Probab=100.00 E-value=4.6e-48 Score=343.51 Aligned_cols=147 Identities=44% Similarity=0.758 Sum_probs=133.0
Q ss_pred eeEEeccCCCCceeeeEEEEeec------CCcccccCccccceEEEEEeec-CCCChhhhhcCCCceEEEEEEEeeCCCC
Q psy12959 44 EIGIAAGGLYNYYILDSIHFHWG------GSEHTFNGQRLATEVHLVHYNS-QYESLTEAKDEPRGLAVIAVIIHETPED 116 (239)
Q Consensus 44 ~~~i~gg~l~~~Y~l~q~HfHwG------gSEHtidG~~~~~E~HiVh~~~-~y~~~~eA~~~~~glaVlavf~~~~~~~ 116 (239)
...++||+ ..+|.|.||||||| ||||+|||++|||||||||++. +|.++++|...++++||||||+++++.+
T Consensus 65 ~~~~~gg~-~~~Y~l~qfHfHwG~~~~~~gSEH~idG~~yp~E~HlVh~n~~~y~~~~~A~~~~~~laVl~v~~~~~~~~ 143 (248)
T cd03123 65 TMHIRGGP-GTEYTAAQLHLHWGGRGSLSGSEHTIDGIRFAAELHIVHYNSDKYSSFDEAADKPDGLAVLAILIEVGYPE 143 (248)
T ss_pred CccccCCC-CCCEEEEEEEEeeCCCCCCCCccceecCccCcceeEEEEEcccccCCHHHHhcCCCCeEEEEEEEEecCCC
Confidence 35677766 47999999999997 8999999999999999999998 7999999999999999999999999556
Q ss_pred CCCccccccccCCCCcccccccchhhhhHHHhhhcccccCCCCCCCchhhHHHHhcccCCCCCCeeEcCCCCCCCCcCCC
Q psy12959 117 NPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPA 196 (239)
Q Consensus 117 n~~l~~~~~~~~~~~~~~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~i~~~g~~~~i~~~~~l~~Llp~ 196 (239)
|+.++ .+++.+ ..|..+++...+.. |++.+|||.
T Consensus 144 n~~~~--------------------------------------------~i~~~l-~~i~~~~~~~~~~~-~~l~~llp~ 177 (248)
T cd03123 144 NTYYE--------------------------------------------KIISHL-HEIKYKGQETTVPG-FNVRELLPE 177 (248)
T ss_pred CccHH--------------------------------------------HHHHHH-HhhCcCCcEEecCC-CCHHHhcCC
Confidence 77777 788888 77877888777765 999999998
Q ss_pred CCCCcEEEeecccCCCCCCceEEEEeCeeeecCHHHHhCcc
Q psy12959 197 NRSAFFRYSGSLTTPPCSESVEWTVLYRTVGASRTQVSNPI 237 (239)
Q Consensus 197 ~~~~yy~Y~GSLTTPPCsE~V~WiV~~~pi~IS~~Ql~~~~ 237 (239)
+...||+|.||||||||+|+|+|+||++|+.||++||++|+
T Consensus 178 ~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~iS~~Ql~~fr 218 (248)
T cd03123 178 DLSHYYRYEGSLTTPPCYESVLWTVFRDPVTLSKEQLETLE 218 (248)
T ss_pred CcCCeEEEeccCcCCCCcCcEEEEEeCCceecCHHHHHHHH
Confidence 75579999999999999999999999999999999999986
No 14
>cd00326 alpha_CA Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues and a fourth conserved histidine plays a potential role in proton transfer.
Probab=100.00 E-value=1.1e-47 Score=336.49 Aligned_cols=183 Identities=40% Similarity=0.712 Sum_probs=150.0
Q ss_pred Cccchhhhhhhhc-CCCCc-ccccC-Cce-E-----EEEEcCCCCeeEEeccCCCCceeeeEEEEeec-----CCccccc
Q psy12959 8 RPGALQLLHTRLH-SLIPL-FSYFP-FCA-V-----VLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG-----GSEHTFN 73 (239)
Q Consensus 8 ~~~~~~~~~~~~~-~~~~~-~~y~~-~~~-~-----~~~~~~~~~~~~i~gg~l~~~Y~l~q~HfHwG-----gSEHtid 73 (239)
+|+.|..-..... .+.++ +.|.+ ... + .+++........|+||+|...|+|.||||||| ||||+||
T Consensus 5 SPI~I~~~~~~~~~~l~~l~~~~~~~~~~~i~N~G~tv~~~~~~~~~~i~~~~l~~~y~l~q~HfH~G~~~~~gSEH~i~ 84 (227)
T cd00326 5 SPINIVTSAVVYDPSLPPLNFDYYPTTSLTLVNNGHTVQVNFDDDGGTLSGGGLPGRYKLVQFHFHWGSENSPGSEHTID 84 (227)
T ss_pred CCeEECccceeECCCCCceeecccCCCceEEEECCeeEEEEecCCCceEeCCCCCCCEEEEEEEEecCCCCCCCCcceeC
Confidence 4666654222222 25555 55554 221 1 13343332357889999999999999999999 9999999
Q ss_pred CccccceEEEEEeecCCCChhhhhcCCCceEEEEEEEeeCCCCCCCccccccccCCCCcccccccchhhhhHHHhhhccc
Q psy12959 74 GQRLATEVHLVHYNSQYESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSH 153 (239)
Q Consensus 74 G~~~~~E~HiVh~~~~y~~~~eA~~~~~glaVlavf~~~~~~~n~~l~~~~~~~~~~~~~~~~~c~r~~~~~~~~~~~~~ 153 (239)
|++|||||||||++.+|.+. ||...++++||||||+++++.+|++++
T Consensus 85 g~~y~~E~H~Vh~~~~~~~~-~a~~~~~~laVv~v~~~~~~~~n~~l~-------------------------------- 131 (227)
T cd00326 85 GKRYPLELHLVHYNSDYYSS-EAAKKPGGLAVLGVFFEVGEKENPFLK-------------------------------- 131 (227)
T ss_pred CEeccccceEEEECCCCCCh-hhhccCCCeEEEEEEEEecccCChhHH--------------------------------
Confidence 99999999999999988888 999999999999999999966788777
Q ss_pred ccCCCCCCCchhhHHHHhcccCCCCCCeeEcCCCCCCCCcCCCCCCCcEEEeecccCCCCCCceEEEEeCeeeecCHHHH
Q psy12959 154 FQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPCSESVEWTVLYRTVGASRTQV 233 (239)
Q Consensus 154 ~~~~~~~~~~l~~i~~~l~~~i~~~g~~~~i~~~~~l~~Llp~~~~~yy~Y~GSLTTPPCsE~V~WiV~~~pi~IS~~Ql 233 (239)
.+++.+ ..+..+++...+.. +++.+|||....+||+|.||||||||+|+|+|+|+++|++||++||
T Consensus 132 ------------~i~~~l-~~~~~~~~~~~~~~-~~l~~llp~~~~~y~~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql 197 (227)
T cd00326 132 ------------KILDAL-PKIKYKGKETTLPP-FDLSDLLPSSLRDYYTYEGSLTTPPCSEGVTWIVFKEPITISKEQL 197 (227)
T ss_pred ------------HHHHHH-HhcCcCCcEeecCC-CCHHHHCCCCcCCEEEEeccCcCCCCccceEEEEeCCceecCHHHH
Confidence 888888 77777788888865 9999999987459999999999999999999999999999999999
Q ss_pred hCcc
Q psy12959 234 SNPI 237 (239)
Q Consensus 234 ~~~~ 237 (239)
++|.
T Consensus 198 ~~f~ 201 (227)
T cd00326 198 EAFR 201 (227)
T ss_pred HHHH
Confidence 9885
No 15
>cd03124 alpha_CA_prokaryotic_like Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carb
Probab=100.00 E-value=2.7e-43 Score=306.87 Aligned_cols=165 Identities=36% Similarity=0.639 Sum_probs=128.9
Q ss_pred CccchhhhhhhhcCCCCc-ccccCCceE--------EEEEcCCCCeeEEeccCCCCceeeeEEEEeecCCcccccCcccc
Q psy12959 8 RPGALQLLHTRLHSLIPL-FSYFPFCAV--------VLKLDQNEKEIGIAAGGLYNYYILDSIHFHWGGSEHTFNGQRLA 78 (239)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~~y~~~~~~--------~~~~~~~~~~~~i~gg~l~~~Y~l~q~HfHwGgSEHtidG~~~~ 78 (239)
+|+.|.........+.++ +.|.+.... .+.++++...+.+.| ..|.|.|||||| ||||+|||++||
T Consensus 22 SPI~I~~~~~~~~~~~~l~~~~~~~~~~l~N~G~tv~~~~~~~~~~~~~~g----~~Y~l~q~HfH~-gSEH~idg~~y~ 96 (216)
T cd03124 22 SPIDITTKAVVSDKLPPLNYNYKPTSATLVNNGHTIQVNFEGNGGTLTIDG----ETYQLLQFHFHS-PSEHLINGKRYP 96 (216)
T ss_pred CCEeeccCceeecCCCCceeeccCCceEEEECCceEEEEEcCCCCeEEECC----cEEEEEEEEecC-CcccEeccccCC
Confidence 555555433333336666 777763322 234443334455554 799999999999 999999999999
Q ss_pred ceEEEEEeecCCCChhhhhcCCCceEEEEEEEeeCCCCCCCccccccccCCCCcccccccchhhhhHHHhhhcccccCCC
Q psy12959 79 TEVHLVHYNSQYESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETP 158 (239)
Q Consensus 79 ~E~HiVh~~~~y~~~~eA~~~~~glaVlavf~~~~~~~n~~l~~~~~~~~~~~~~~~~~c~r~~~~~~~~~~~~~~~~~~ 158 (239)
|||||||++. ++++||||||++++ +.|++++
T Consensus 97 ~ElH~Vh~~~-----------~~~laVl~v~~~~~-~~n~~l~------------------------------------- 127 (216)
T cd03124 97 LEAHLVHKSK-----------DGQLAVVAVLFEEG-KENPFLK------------------------------------- 127 (216)
T ss_pred ceeeEEEEcC-----------CCCEEEEEEEEeec-CCCHHHH-------------------------------------
Confidence 9999999984 68999999999998 5677776
Q ss_pred CCCCchhhHHHHhcccCCCCCCeeEcCCCC-CCCCcCCCCCCCcEEEeecccCCCCCCceEEEEeCeeeecCHHHHhCcc
Q psy12959 159 EDNPILAPLVSSLGETIDDPGESTSLPIPL-APSDLLPANRSAFFRYSGSLTTPPCSESVEWTVLYRTVGASRTQVSNPI 237 (239)
Q Consensus 159 ~~~~~l~~i~~~l~~~i~~~g~~~~i~~~~-~l~~Llp~~~~~yy~Y~GSLTTPPCsE~V~WiV~~~pi~IS~~Ql~~~~ 237 (239)
.+++.+ ..+. ++...+.. + ++.+|+|.. .+||+|.||||||||+|+|+|+||++|+.||.+||++|+
T Consensus 128 -------~i~~~l-~~~~--~~~~~~~~-~~~~~~llp~~-~~y~~Y~GSLTtPpC~E~V~W~V~~~~~~is~~Ql~~f~ 195 (216)
T cd03124 128 -------KILDNM-PKKE--GTEVNLPA-ILDPNELLPES-RSYYRYEGSLTTPPCSEGVRWIVLKQPITISKEQLAKFR 195 (216)
T ss_pred -------HHHHhh-hhhc--CCceeccC-CCCHHHhcccC-CceEEEeeecCCCCCcCceEEEecCCccccCHHHHHHHH
Confidence 777777 4443 44455654 5 999999987 489999999999999999999999999999999999886
Q ss_pred C
Q psy12959 238 G 238 (239)
Q Consensus 238 ~ 238 (239)
.
T Consensus 196 ~ 196 (216)
T cd03124 196 A 196 (216)
T ss_pred H
Confidence 3
No 16
>PLN02202 carbonate dehydratase
Probab=100.00 E-value=2.5e-42 Score=312.31 Aligned_cols=124 Identities=32% Similarity=0.575 Sum_probs=104.4
Q ss_pred CceeeeEEEEeecCCcccccCccccceEEEEEeecCCCChhhhhcCCCceEEEEEEEeeCCCCCCCccccccccCCCCcc
Q psy12959 54 NYYILDSIHFHWGGSEHTFNGQRLATEVHLVHYNSQYESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPW 133 (239)
Q Consensus 54 ~~Y~l~q~HfHwGgSEHtidG~~~~~E~HiVh~~~~y~~~~eA~~~~~glaVlavf~~~~~~~n~~l~~~~~~~~~~~~~ 133 (239)
..|.|.|||||| ||||+|||++|||||||||++. ++++|||||||+++. +|+.++
T Consensus 111 ~~Y~L~QfHFH~-gSEH~idG~~yp~E~H~VH~~~-----------~g~laVlgv~~~~g~-~n~~l~------------ 165 (284)
T PLN02202 111 KNYTLLQMHWHT-PSEHHLHGVQYAAELHMVHQAK-----------DGSFAVVASLFKIGT-EEPFLS------------ 165 (284)
T ss_pred cEEEEEEEEecC-CcccEECCeeCCeEEEEEEEcC-----------CCCEEEEEEEEeccC-CChHHH------------
Confidence 589999999999 9999999999999999999973 578999999999994 677776
Q ss_pred cccccchhhhhHHHhhhcccccCCCCCCCchhhHHHHhcccCCC---CCCe---eEcCCCCCCCCcCCCCCCCcEEEeec
Q psy12959 134 LRCFCTRLLIYTILLQMSSHFQETPEDNPILAPLVSSLGETIDD---PGES---TSLPIPLAPSDLLPANRSAFFRYSGS 207 (239)
Q Consensus 134 ~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~i~~---~g~~---~~i~~~~~l~~Llp~~~~~yy~Y~GS 207 (239)
.+++.+ ..+.. +++. ..+. .|++..|+|.+ .+||+|.||
T Consensus 166 --------------------------------~i~~~l-~~i~~~~~~~~~~~~~~~~-~~~~~~llp~~-~~yy~Y~GS 210 (284)
T PLN02202 166 --------------------------------QMKDKL-VKLKEERFKGNHTAQVEVG-KIDTRHIERKT-RKYFRYIGS 210 (284)
T ss_pred --------------------------------HHHHHH-HHhhcccccCccccccccc-ccCHHHhCccc-cceEEEecc
Confidence 566655 44422 2321 1232 38999999987 489999999
Q ss_pred ccCCCCCCceEEEEeCeeeecCHHHHhCcc
Q psy12959 208 LTTPPCSESVEWTVLYRTVGASRTQVSNPI 237 (239)
Q Consensus 208 LTTPPCsE~V~WiV~~~pi~IS~~Ql~~~~ 237 (239)
||||||+|+|+|+||++|++||.+||++|+
T Consensus 211 LTTPPC~E~V~W~V~~~pi~IS~~Ql~~fr 240 (284)
T PLN02202 211 LTTPPCSENVSWTILGKVRSMSKEQVELLR 240 (284)
T ss_pred ccCCCCCCceEEEEeCceEEcCHHHHHHHH
Confidence 999999999999999999999999999886
No 17
>PLN02179 carbonic anhydrase
Probab=100.00 E-value=7.4e-40 Score=289.08 Aligned_cols=120 Identities=36% Similarity=0.586 Sum_probs=99.9
Q ss_pred CeeEEeccCCCCceeeeEEEEeecCCcccccCccccceEEEEEeecCCCChhhhhcCCCceEEEEEEEeeCCCCCCCccc
Q psy12959 43 KEIGIAAGGLYNYYILDSIHFHWGGSEHTFNGQRLATEVHLVHYNSQYESLTEAKDEPRGLAVIAVIIHETPEDNPILAP 122 (239)
Q Consensus 43 ~~~~i~gg~l~~~Y~l~q~HfHwGgSEHtidG~~~~~E~HiVh~~~~y~~~~eA~~~~~glaVlavf~~~~~~~n~~l~~ 122 (239)
..+.+.| ..|+|.|||||| ||||+|||++|||||||||++. .+++||||||+++| ++|++++
T Consensus 111 ~~~~i~g----~~Y~L~QfHFH~-gSEH~InG~~yp~E~H~VH~n~-----------~g~laVlgvl~~~g-~~n~~l~- 172 (235)
T PLN02179 111 GKITIHQ----TDYKLVQCHWHS-PSEHTINGTSYDLELHMVHTSA-----------SGKTAVVGVLYKLG-EPDEFLT- 172 (235)
T ss_pred CeeEecC----cEEEEEEEEecC-CcceEecccccCeeEEEEEEcC-----------CCCeEEEEEEEecC-CCCHHHH-
Confidence 3445543 689999999999 9999999999999999999984 47899999999999 4677777
Q ss_pred cccccCCCCcccccccchhhhhHHHhhhcccccCCCCCCCchhhHHHHhcccCCCCCCeeEcCCCCCCCCcCCCCCCCcE
Q psy12959 123 LVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFF 202 (239)
Q Consensus 123 ~~~~~~~~~~~~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~i~~~g~~~~i~~~~~l~~Llp~~~~~yy 202 (239)
++++.+ ..+.. +...+.. +++.+|+|.+. +||
T Consensus 173 -------------------------------------------~il~~l-~~~~~--~~~~~~~-l~~~~llp~~~-~yy 204 (235)
T PLN02179 173 -------------------------------------------KLLNGI-KGVGK--KEINLGI-VDPRDIRFETN-NFY 204 (235)
T ss_pred -------------------------------------------HHHHhh-hcccC--cceeecc-cCHHHhCcCCC-CEE
Confidence 777777 54432 3333443 89999999874 899
Q ss_pred EEeecccCCCCCCceEEEEeCeeeec
Q psy12959 203 RYSGSLTTPPCSESVEWTVLYRTVGA 228 (239)
Q Consensus 203 ~Y~GSLTTPPCsE~V~WiV~~~pi~I 228 (239)
+|.||||||||+|+|+|+|+++|+-+
T Consensus 205 ~Y~GSLTTPPC~E~V~WiV~~~p~~~ 230 (235)
T PLN02179 205 RYIGSLTIPPCTEGVIWTVVKRVVWF 230 (235)
T ss_pred EEecccCCCCCCCceEEEEecCcEEe
Confidence 99999999999999999999999865
No 18
>COG3338 Cah Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-40 Score=284.79 Aligned_cols=164 Identities=34% Similarity=0.583 Sum_probs=127.3
Q ss_pred cchhhhhhhhc-CCCCc-ccccCCceEEE-------EEcCCCCeeEEeccCCCCceeeeEEEEeecCCcccccCccccce
Q psy12959 10 GALQLLHTRLH-SLIPL-FSYFPFCAVVL-------KLDQNEKEIGIAAGGLYNYYILDSIHFHWGGSEHTFNGQRLATE 80 (239)
Q Consensus 10 ~~~~~~~~~~~-~~~~~-~~y~~~~~~~~-------~~~~~~~~~~i~gg~l~~~Y~l~q~HfHwGgSEHtidG~~~~~E 80 (239)
-||+.-|+... ...++ +.|.| .++.+ ++....+.-.|.+. ++.|.|.|||||. ||||.|||+.||||
T Consensus 56 SPIdI~~~~~~~~~~~l~~~Y~~-s~~~i~nnghTiqv~~~~~~n~l~~~--gk~y~L~qfHFH~-PsEhlv~Gk~~pmE 131 (250)
T COG3338 56 SPIDIEHAVDVQDKPPLQLNYQP-SAVTIKNNGHTIQVNFEPGSNHLRYD--GKTYQLVQFHFHA-PSEHLVDGKSFPME 131 (250)
T ss_pred CCccHHHheecccccchheeecc-CceEEEecCcEEEEeccCCCcceeec--CcEEEEEEEEecC-chHHhhccccccce
Confidence 35666666655 44555 89998 44432 22222111122222 2889999999999 99999999999999
Q ss_pred EEEEEeecCCCChhhhhcCCCceEEEEEEEeeCCCCCCCccccccccCCCCcccccccchhhhhHHHhhhcccccCCCCC
Q psy12959 81 VHLVHYNSQYESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPED 160 (239)
Q Consensus 81 ~HiVh~~~~y~~~~eA~~~~~glaVlavf~~~~~~~n~~l~~~~~~~~~~~~~~~~~c~r~~~~~~~~~~~~~~~~~~~~ 160 (239)
+|+||.+. .+.|+|+|||++.| ..|+.++
T Consensus 132 aHFVHkd~-----------~g~L~Vl~v~~~~g-~eN~~l~--------------------------------------- 160 (250)
T COG3338 132 AHFVHKDA-----------KGTLAVLAVLLQAG-AENPELA--------------------------------------- 160 (250)
T ss_pred eeeeecCC-----------CCCEEEEEEeeecC-CCCcchh---------------------------------------
Confidence 99999874 58899999999999 6788887
Q ss_pred CCchhhHHHHhcccCCCCCCeeEcCCCCCCCCcCCCCCCCcEEEeecccCCCCCCceEEEEeCeeeecCHHHHhCcc
Q psy12959 161 NPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPCSESVEWTVLYRTVGASRTQVSNPI 237 (239)
Q Consensus 161 ~~~l~~i~~~l~~~i~~~g~~~~i~~~~~l~~Llp~~~~~yy~Y~GSLTTPPCsE~V~WiV~~~pi~IS~~Ql~~~~ 237 (239)
.|++.+ + ..+|+...+...||++.|||... +||+|+||||||||+|+|.|+|+++|+.||++|+++|.
T Consensus 161 -----~l~~~f-P--~~~ge~~~l~~~id~~~~lP~s~-~yyty~GSLTTPPCsEgV~W~Vl~ep~evs~~qi~~f~ 228 (250)
T COG3338 161 -----PLWEGF-P--QKPGEEETLDETIDLNAFLPESR-NYYTYNGSLTTPPCSEGVTWIVLKEPIEVSQEQIAEFS 228 (250)
T ss_pred -----HHHHhc-c--cccccccceeeccChhHhCcccc-ceEEecccccCCCcccCceEEEEcCcccCCHHHHHHHH
Confidence 677666 2 13455554555699999999995 99999999999999999999999999999999999874
No 19
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=27.93 E-value=20 Score=25.95 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=13.4
Q ss_pred CcccccCccccceEEEEE
Q psy12959 68 SEHTFNGQRLATEVHLVH 85 (239)
Q Consensus 68 SEHtidG~~~~~E~HiVh 85 (239)
-||+|||+.|-.+--|.-
T Consensus 8 G~h~IdGk~y~v~kDlYd 25 (65)
T PF09211_consen 8 GEHTIDGKKYYVKKDLYD 25 (65)
T ss_dssp EEEEETTEEEEESS-EEE
T ss_pred ccEEECCEEEEecCChhh
Confidence 489999999987755543
No 20
>smart00190 IL4_13 Interleukins 4 and 13. Interleukins-4 and -13 are cytokines involved in inflammatory and immune responses. IL-4 stimulates B and T cells.
Probab=24.03 E-value=20 Score=29.60 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=20.3
Q ss_pred cCCCCCCceEEEEeCeeeecCHHH
Q psy12959 209 TTPPCSESVEWTVLYRTVGASRTQ 232 (239)
Q Consensus 209 TTPPCsE~V~WiV~~~pi~IS~~Q 232 (239)
-+|||+|...|=||-.|-..+.+.
T Consensus 45 ~~~~C~e~~V~dV~~~~kNtTe~e 68 (138)
T smart00190 45 GTNLCTEMMVPDVLAATKNTTEKE 68 (138)
T ss_pred CCCCcccccHHHHhcccCCCcchh
Confidence 378999999999998888877765
No 21
>PF06594 HCBP_related: Haemolysin-type calcium binding protein related domain; InterPro: IPR010566 This family consists of a number of bacteria specific domains, which are found in haemolysin-type calcium binding proteins. This family is found in conjunction with IPR001343 from INTERPRO and is often found in multiple copies.
Probab=21.91 E-value=1.7e+02 Score=18.57 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=23.3
Q ss_pred EEEEcCCCCeeEEeccCCCC-ceeeeEEEEee
Q psy12959 35 VLKLDQNEKEIGIAAGGLYN-YYILDSIHFHW 65 (239)
Q Consensus 35 ~~~~~~~~~~~~i~gg~l~~-~Y~l~q~HfHw 65 (239)
++++...++++.|.+--... .|.+.+|.|.=
T Consensus 3 vi~i~~s~d~iti~~~f~~~~~~~Ie~i~FaD 34 (43)
T PF06594_consen 3 VISIKGSGDSITIKNWFSSDGSYRIEQIEFAD 34 (43)
T ss_pred EEEEcCCCcEEEEeeeECccCCCcEeEEEEcC
Confidence 46666767788887654444 89999999986
Done!