RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12959
(239 letters)
>3iai_A Carbonic anhydrase 9; transmembrane proteins, cell membrane,
projection, disulfide bond, glycoprotein, lyase,
membrane, binding, nucleus; HET: AZM NAG BMA MAN; 2.20A
{Homo sapiens}
Length = 257
Score = 163 bits (414), Expect = 4e-50
Identities = 60/190 (31%), Positives = 83/190 (43%), Gaps = 51/190 (26%)
Query: 49 AGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHYNSQYESLTEAKDEPRGL 103
A G Y +H HWG GSEHT G R E+H+VH ++ + + EA P GL
Sbjct: 79 ALGPGREYRALQLHLHWGAAGRPGSEHTVEGHRFPAEIHVVHLSTAFARVDEALGRPGGL 138
Query: 104 AVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPEDNPI 163
AV+A + E PE+N L+S L+ +
Sbjct: 139 AVLAAFLEEGPEENSAYEQLLSRLEEIA-------------------------------- 166
Query: 164 LAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPCSESVEWTVLY 223
+ G T +P L S LLP++ S +F+Y GSLTTPPC++ V WTV
Sbjct: 167 -------------EEGSETQVP-GLDISALLPSDFSRYFQYEGSLTTPPCAQGVIWTVFN 212
Query: 224 RTVGASRTQV 233
+TV S Q+
Sbjct: 213 QTVMLSAKQL 222
>3k34_A Carbonic anhydrase 2; atomic resolution, sulfonamide inhibitor
mutation, lyase, metal-binding, lyase-lyase inhibitor
compl; HET: HGB SUA; 0.90A {Homo sapiens} PDB: 1ca3_A*
1cnw_A* 1cny_A* 1eou_A* 1g6v_A 1hca_A 1kwq_A* 1kwr_A*
1t9n_A 1tb0_X 1tbt_X 1te3_X 1teq_X 1teu_X 1cnx_A 1xev_A
1xeg_A 2ax2_A* 2eu3_A* 2ez7_A* ...
Length = 260
Score = 161 bits (410), Expect = 2e-49
Identities = 57/207 (27%), Positives = 83/207 (40%), Gaps = 53/207 (25%)
Query: 32 CAVVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHY 86
A ++ D ++ + + G L Y L HFHWG GSEHT + ++ A E+HLVH+
Sbjct: 64 HAFNVEFDDSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAELHLVHW 123
Query: 87 NSQYESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTI 146
N++Y +A +P GLAV+ + + + P L +V LD +
Sbjct: 124 NTKYGDFGKAVQQPDGLAVLGIFL-KVGSAKPGLQKVVDVLDSIK--------------- 167
Query: 147 LLQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSG 206
G+S P LLP + ++ Y G
Sbjct: 168 ------------------------------TKGKSADFT-NFDPRGLLPESLD-YWTYPG 195
Query: 207 SLTTPPCSESVEWTVLYRTVGASRTQV 233
SLTTPP E V W VL + S QV
Sbjct: 196 SLTTPPLLECVTWIVLKEPISVSSEQV 222
>1rj5_A Carbonic anhydrase XIV; beta-sheet, alpha-helix, zinc enzyme,
lyase; HET: NAG BMA; 2.81A {Mus musculus} SCOP: b.74.1.1
PDB: 1rj6_A*
Length = 261
Score = 160 bits (407), Expect = 6e-49
Identities = 62/195 (31%), Positives = 85/195 (43%), Gaps = 53/195 (27%)
Query: 46 GIAAGGLYNYYILDSIHFHWG------GSEHTFNGQRLATEVHLVHYNSQ-YESLTEAKD 98
+ GGL Y +H HWG GSEH N + A E+H+VHY+SQ Y SL+EA
Sbjct: 76 TLHLGGLPRKYTAAQLHLHWGQRGSLEGSEHHINSEATAAELHVVHYDSQSYSSLSEAAQ 135
Query: 99 EPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETP 158
+P+GLAV+ ++I +NP ++S L +
Sbjct: 136 KPQGLAVLGILIEVGETENPAYDHILSRLHEIR--------------------------- 168
Query: 159 EDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPCSESVE 218
+ TS+P P + +L P FFRY+GSLTTPPC +SV
Sbjct: 169 ------------------YKDQKTSVP-PFSVRELFPQQLEQFFRYNGSLTTPPCYQSVL 209
Query: 219 WTVLYRTVGASRTQV 233
WTV R S Q+
Sbjct: 210 WTVFNRRAQISMGQL 224
>2hfx_A Carbonic anhydrase 3; proton shuttle, HCA III, proton transfer,
lyase; 1.70A {Homo sapiens} PDB: 3uyq_A 2hfw_A 1z93_A
2hfy_A 3uyn_A 1z97_A 1flj_A*
Length = 260
Score = 159 bits (404), Expect = 1e-48
Identities = 54/229 (23%), Positives = 81/229 (35%), Gaps = 53/229 (23%)
Query: 11 ALQLLHTRLHSLIPLFSYFPFCAVVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG---- 66
+LQ + D + G L Y L H HWG
Sbjct: 43 SLQPWSVSYDGGSAKTILNNGHTCRVVFDDTYDRSMLRGGPLPGPYRLRQFHLHWGSSDD 102
Query: 67 -GSEHTFNGQRLATEVHLVHYNSQYESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVS 125
GSEHT +G + A E+HLVH+N +Y + EA + G+AVI + + + +N +
Sbjct: 103 HGSEHTVDGVKYAAELHLVHWNPKYNTFKEALKQRDGIAVIGIFL-KIGHENGEFQIFLD 161
Query: 126 SLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLP 185
+LD + G+
Sbjct: 162 ALDKIK---------------------------------------------TKGKEAPFT 176
Query: 186 IPLAPSDLLPANRSAFFRYSGSLTTPPCSESVEWTVLYRTVGASRTQVS 234
PS L PA+R ++ Y GS TTPPC E + W +L + S Q++
Sbjct: 177 -KFDPSSLFPASRD-YWTYQGSFTTPPCEECIVWLLLKEPMTVSSDQMA 223
>3fe4_A Carbonic anhydrase 6; secretion, metal binding, structural GEN
structural genomics consortium, SGC, glycoprotein,
lyase, M binding, secreted; 1.90A {Homo sapiens}
Length = 278
Score = 157 bits (398), Expect = 2e-47
Identities = 66/208 (31%), Positives = 92/208 (44%), Gaps = 58/208 (27%)
Query: 34 VVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG-------GSEHTFNGQRLATEVHLVHY 86
V + L + + +A G +Y +HFHWG GSEHT +G R E+H+VHY
Sbjct: 68 VQISLP-STMRMTVADGTVYI---AQQMHFHWGGASSEISGSEHTVDGIRHVIEIHIVHY 123
Query: 87 NSQYESLTEAKDEPRGLAVIAVIIHETP-EDNPILAPLVSSLDHVTPWLRCFCTRLLIYT 145
NS+Y+S A+D P GLAV+A + +N + +S L ++
Sbjct: 124 NSKYKSYDIAQDAPDGLAVLAAFVEVKNYPENTYYSNFISHLANIK-------------- 169
Query: 146 ILLQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYS 205
PG+ T+L L D+LP N ++ Y
Sbjct: 170 -------------------------------YPGQRTTLT-GLDVQDMLPRNLQHYYTYH 197
Query: 206 GSLTTPPCSESVEWTVLYRTVGASRTQV 233
GSLTTPPC+E+V W VL V SRTQV
Sbjct: 198 GSLTTPPCTENVHWFVLADFVKLSRTQV 225
>3d0n_A Carbonic anhydrase 13; lyase, metal-binding, metal binding PROT;
HET: GOL; 1.55A {Homo sapiens} PDB: 3czv_A* 3da2_A*
Length = 264
Score = 156 bits (395), Expect = 4e-47
Identities = 65/231 (28%), Positives = 87/231 (37%), Gaps = 64/231 (27%)
Query: 20 HSLIPL-FSYFPFCA---------VVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG--- 66
SL PL Y P A + D E + + G L Y L +H HWG
Sbjct: 45 SSLRPLSIKYDPSSAKIISNSGHSFNVDFDDTENKSVLRGGPLTGSYRLRQVHLHWGSAD 104
Query: 67 --GSEHTFNGQRLATEVHLVHYNSQ-YESLTEAKDEPRGLAVIAVIIHETPEDNPILAPL 123
GSEH +G A E+H+VH+NS Y S EA EP GLAV+ V + E N L +
Sbjct: 105 DHGSEHIVDGVSYAAELHVVHWNSDKYPSFVEAAHEPDGLAVLGVFLQIG-EPNSQLQKI 163
Query: 124 VSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTS 183
+LD + + G+ T
Sbjct: 164 TDTLDSIK---------------------------------------------EKGKQTR 178
Query: 184 LPIPLAPSDLLPANRSAFFRYSGSLTTPPCSESVEWTVLYRTVGASRTQVS 234
LLP + ++ Y GSLT PP ESV W VL + + S Q++
Sbjct: 179 FT-NFDLLSLLPPSWD-YWTYPGSLTVPPLLESVTWIVLKQPINISSQQLA 227
>1keq_A F65A/Y131C-MI carbonic anhydrase V; proton transfer, engineered
residue, lyase; HET: 4MZ; 1.88A {Mus musculus} SCOP:
b.74.1.1 PDB: 1dmx_A 1dmy_A* 1urt_A
Length = 248
Score = 155 bits (394), Expect = 4e-47
Identities = 63/207 (30%), Positives = 87/207 (42%), Gaps = 54/207 (26%)
Query: 34 VVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHYNS 88
++ D + ++ GI+ G L N+Y L HFHWG GSEH +G E+HLVH+NS
Sbjct: 45 FQVEFDDSCEDSGISGGPLGNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNS 104
Query: 89 -QYESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTIL 147
+YE+ +A GLAVI V + + + L LV L V
Sbjct: 105 TKYENCKKASVGENGLAVIGVFL-KLGAHHQALQKLVDVLPEVR---------------- 147
Query: 148 LQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGS 207
++ P PS L+PA R ++ Y GS
Sbjct: 148 -----------------------------HKDTQVAMG-PFDPSCLMPACRD-YWTYPGS 176
Query: 208 LTTPPCSESVEWTVLYRTVGASRTQVS 234
LTTPP +ESV W V V S +Q+S
Sbjct: 177 LTTPPLAESVTWIVQKTPVEVSPSQLS 203
>2foy_A Carbonic anhydrase 1; lyase, zinc, inhibitor, copper; HET: B30;
1.55A {Homo sapiens} SCOP: b.74.1.1 PDB: 1bzm_A* 1czm_A*
1azm_A 1hug_A 1huh_A 1hcb_A* 2fw4_A* 2nmx_A* 2nn1_A*
2nn7_A* 3lxe_A* 1jv0_A 1j9w_A 1crm_A 2cab_A 2it4_A
Length = 260
Score = 155 bits (394), Expect = 5e-47
Identities = 56/209 (26%), Positives = 84/209 (40%), Gaps = 54/209 (25%)
Query: 32 CAVVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHY 86
+ + + N+ + G + Y L HFHWG GSEHT +G + + E+H+ H+
Sbjct: 64 HSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHW 123
Query: 87 NSQ-YESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYT 145
NS Y SL EA + GLAVI V++ E NP L ++ +L +
Sbjct: 124 NSAKYSSLAEAASKADGLAVIGVLMKVG-EANPKLQKVLDALQAIK-------------- 168
Query: 146 ILLQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYS 205
G+ PS LLP++ F+ Y
Sbjct: 169 -------------------------------TKGKRAPFT-NFDPSTLLPSSLD-FWTYP 195
Query: 206 GSLTTPPCSESVEWTVLYRTVGASRTQVS 234
GSLT PP ESV W + ++ S Q++
Sbjct: 196 GSLTHPPLYESVTWIICKESISVSSEQLA 224
>3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like domain,
glycoprotein, hydrolase, membrane, phosphoprotein,
transmembrane, cell adhesion; 1.70A {Mus musculus} PDB:
3kld_B* 3jxh_C
Length = 269
Score = 154 bits (392), Expect = 1e-46
Identities = 56/194 (28%), Positives = 80/194 (41%), Gaps = 53/194 (27%)
Query: 47 IAAGGLYNYYILDSIHFHWG------GSEHTFNGQRLATEVHLVHYNSQ-YESLTEAKDE 99
++ GL + + + FHWG GSEH+ NG+R E+ + YN ++S A E
Sbjct: 83 VSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSVNGRRFPVEMQIFFYNPDDFDSFQTAISE 142
Query: 100 PRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPE 159
R + +A+ +P DN L P++ L V
Sbjct: 143 NRIIGAMAIFFQVSPRDNSALDPIIHGLKGVV---------------------------- 174
Query: 160 DNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPCSESVEW 219
+ T L P DLLPA+ +++RY+GSLTTPPCSE VEW
Sbjct: 175 -----------------HHEKETFLD-PFILRDLLPASLGSYYRYTGSLTTPPCSEIVEW 216
Query: 220 TVLYRTVGASRTQV 233
V R V S Q+
Sbjct: 217 IVFRRPVPISYHQL 230
>1jd0_A Carbonic anhydrase XII; extracellular domain, bitopic protein, type
I membrane protein, lyase; HET: AZM; 1.50A {Homo
sapiens} SCOP: b.74.1.1 PDB: 1jcz_A*
Length = 263
Score = 154 bits (392), Expect = 1e-46
Identities = 60/195 (30%), Positives = 82/195 (42%), Gaps = 54/195 (27%)
Query: 46 GIAAGGLYNYYILDSIHFHWG------GSEHTFNGQRLATEVHLVHYNSQ-YESLTEAKD 98
+ GL + Y +H HWG GSEHT +GQ A E+H+VHYNS Y + A +
Sbjct: 75 DMHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHYNSDLYPDASTASN 134
Query: 99 EPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETP 158
+ GLAV+AV+I E NP + S L HV
Sbjct: 135 KSEGLAVLAVLI-EMGSFNPSYDKIFSHLQHVK--------------------------- 166
Query: 159 EDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPCSESVE 218
G+ +P +LLP + ++RY GSLTTPPC+ +V
Sbjct: 167 ------------------YKGQEAFVP-GFNIEELLPERTAEYYRYRGSLTTPPCNPTVL 207
Query: 219 WTVLYRTVGASRTQV 233
WTV V S+ Q+
Sbjct: 208 WTVFRNPVQISQEQL 222
>3fw3_A Carbonic anhydrase 4; structure-based drug design. small molecule
complex. CO-CRYS membrane, disease mutation,
glycoprotein, GPI-anchor; HET: ETS GLC; 1.72A {Homo
sapiens} PDB: 1znc_A* 3f7b_A* 3f7u_A*
Length = 266
Score = 154 bits (390), Expect = 2e-46
Identities = 53/197 (26%), Positives = 77/197 (39%), Gaps = 55/197 (27%)
Query: 46 GIAAGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHYNS--QYESLTEAKD 98
I+ GGL Y +H HW GSEH+ +G+ A E+H+VH ++ EA+D
Sbjct: 81 SISGGGLPAPYQAKQLHLHWSDLPYKGSEHSLDGEHFAMEMHIVHEKEKGTSRNVKEAQD 140
Query: 99 EPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETP 158
+AV+A ++ + N PLV +L ++
Sbjct: 141 PEDEIAVLAFLVEAGTQVNEGFQPLVEALSNIP--------------------------- 173
Query: 159 EDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSA--FFRYSGSLTTPPCSES 216
P ST++ + DLLP +FRY GSLTTP C E
Sbjct: 174 ------------------KPEMSTTMA-ESSLLDLLPKEEKLRHYFRYLGSLTTPTCDEK 214
Query: 217 VEWTVLYRTVGASRTQV 233
V WTV + R Q+
Sbjct: 215 VVWTVFREPIQLHREQI 231
>3jxf_A Receptor-type tyrosine-protein phosphatase zeta; Ca-like domain,
alternative splicing, glycoprotein, hydrolase, membrane,
polymorphism; 2.00A {Homo sapiens} PDB: 3s97_A*
Length = 272
Score = 154 bits (390), Expect = 3e-46
Identities = 41/200 (20%), Positives = 77/200 (38%), Gaps = 54/200 (27%)
Query: 42 EKEIGIAAGGLYNYYILDSIHFHWG-------GSEHTFNGQRLATEVHLVHYNSQ-YESL 93
+ ++ G + I FHWG GSEH+ GQ+ E+ + +++ + S
Sbjct: 77 TNDYRVSGGVSEMVFKASKITFHWGKCNMSSDGSEHSLEGQKFPLEMQIYCFDADRFSSF 136
Query: 94 TEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSH 153
EA L ++++ E+N ++ ++ V+
Sbjct: 137 EEAVKGKGKLRALSILFEVGTEENLDFKAIIDGVESVS---------------------- 174
Query: 154 FQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPC 213
G+ +L P +LLP + ++ Y+GSLT+PPC
Sbjct: 175 -----------------------RFGKQAALD-PFILLNLLPNSTDKYYIYNGSLTSPPC 210
Query: 214 SESVEWTVLYRTVGASRTQV 233
+++V+W V TV S +Q+
Sbjct: 211 TDTVDWIVFKDTVSISESQL 230
>3ml5_A Carbonic anhydrase 7; protein-inhibitor complex, lyase; HET: AZM;
2.05A {Homo sapiens} PDB: 3mdz_A*
Length = 269
Score = 153 bits (388), Expect = 6e-46
Identities = 61/208 (29%), Positives = 87/208 (41%), Gaps = 54/208 (25%)
Query: 32 CAVVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHY 86
+V + + ++ + G L Y L HFHWG GSEHT +G+ +E+HLVH+
Sbjct: 71 HSVQVDFNDSDDRTVVTGGPLEGPYRLKQFHFHWGKKHDVGSEHTVDGKSFPSELHLVHW 130
Query: 87 NSQ-YESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYT 145
N++ Y + EA P GLAV+ V + ET +++P + L +L V
Sbjct: 131 NAKKYSTFGEAASAPDGLAVVGVFL-ETGDEHPSMNRLTDALYMVR-------------- 175
Query: 146 ILLQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYS 205
G P LLPA+R ++ Y
Sbjct: 176 -------------------------------FKGTKAQFS-CFNPKSLLPASRH-YWTYP 202
Query: 206 GSLTTPPCSESVEWTVLYRTVGASRTQV 233
GSLTTPP SESV W VL + S Q+
Sbjct: 203 GSLTTPPLSESVTWIVLREPISISERQM 230
>2znc_A Carbonic anhydrase IV; lyase, zinc, murine, membrane; 2.80A {Mus
musculus} SCOP: b.74.1.1 PDB: 3znc_A*
Length = 258
Score = 152 bits (385), Expect = 1e-45
Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 57/195 (29%)
Query: 47 IAAGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHYNSQYESLTEAKDEPR 101
I G L Y +H HW GSEH+ +G+ A E+H+VH +D
Sbjct: 78 IIGGDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEMHIVHKKLTS----SKEDSKD 133
Query: 102 GLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPEDN 161
AV+A +I + N PLV +L ++
Sbjct: 134 KFAVLAFMIEVGDKVNKGFQPLVEALPSIS------------------------------ 163
Query: 162 PILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANR--SAFFRYSGSLTTPPCSESVEW 219
P ++++ + D+LP + +FRY+GSLTTP C E+V W
Sbjct: 164 ---------------KPHSTSTVR-ESSLQDMLPPSTKMYTYFRYNGSLTTPNCDETVIW 207
Query: 220 TVLYRTVGASRTQVS 234
TV + + + Q
Sbjct: 208 TVYKQPIKIHKNQFL 222
>1y7w_A Halotolerant alpha-type carbonic anhydrase (DCA I; haltolerant
protein, algal Ca anhydrase, salt tolerant protein, zinc
enzyme; 1.86A {Dunaliella salina}
Length = 291
Score = 153 bits (387), Expect = 1e-45
Identities = 41/193 (21%), Positives = 61/193 (31%), Gaps = 45/193 (23%)
Query: 41 NEKEIGIAAGGLYNYYILDSIHFHWGGSEHTFNGQRLATEVHLVHYNSQYESLTEAKDEP 100
I GG ++ HFH SEHT NG E+H+V + A
Sbjct: 109 AANLPTIEIGGTTKSFVPIQFHFHHFLSEHTINGIHYPLELHIVMQEQDPADVATA---- 164
Query: 101 RGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPED 160
LAVI ++ + + L L + ++
Sbjct: 165 -QLAVIGIMYKYSENGDAFLNSLQTQIEGKIG---------------------------- 195
Query: 161 NPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPCSESVEWT 220
T S+ + LLP++ + Y GSLTTP C E V+W
Sbjct: 196 -----------DGTASYGDTGVSIDNINVKTQLLPSSLK-YAGYDGSLTTPGCDERVKWH 243
Query: 221 VLYRTVGASRTQV 233
V +R Q+
Sbjct: 244 VFTTPREVTREQM 256
>4e9o_X D8L antigen, IMV membrane protein; CAH alpha fold, VP7 motif, beta
sheet, cell surface chondroi binding, viral entry,
chondroitin sulfate; 1.42A {Vaccinia virus} PDB: 4etq_X
Length = 269
Score = 146 bits (370), Expect = 2e-43
Identities = 42/193 (21%), Positives = 66/193 (34%), Gaps = 54/193 (27%)
Query: 47 IAAGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHYNSQ-YESLTEAKDEP 100
I+ G L N Y+L S+H +WG GS H + + + E++LVH+N + Y S EAK
Sbjct: 52 ISGGFLPNEYVLSSLHIYWGKEDDYGSNHLIDVYKYSGEINLVHWNKKKYSSYEEAKKHD 111
Query: 101 RGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPED 160
GL +I++ + N +V+ LD +
Sbjct: 112 DGLIIISIFLQVLDHKNVYFQKIVNQLDSIR----------------------------- 142
Query: 161 NPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPCSESVEWT 220
S +LLP+ +F Y G TT S W
Sbjct: 143 ----------------SANTSAPFDSVFYLDNLLPSKLD-YFTYLG--TTINHSADAVWI 183
Query: 221 VLYRTVGASRTQV 233
+ + Q+
Sbjct: 184 IFPTPINIHSDQL 196
>2w2j_A Carbonic anhydrase-related protein; lyase, metal-binding; 1.60A
{Homo sapiens}
Length = 291
Score = 142 bits (360), Expect = 1e-41
Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 59/209 (28%)
Query: 34 VVLKLDQNEKEIGIAAGGLYN--YYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHY 86
+ + L G G L + L + FHWG GSEHT N + E+HL+H+
Sbjct: 90 IQVILKSKSVLSG---GPLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMELHLIHW 146
Query: 87 NSQ-YESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYT 145
NS + S+ EA +P G+A+IA+ + + +++ L + L +
Sbjct: 147 NSTLFGSIDEAVGKPHGIAIIALFV-QIGKEHVGLKAVTEILQDIQ-------------- 191
Query: 146 ILLQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPAN-RSAFFRY 204
G+S ++P P+ LLP ++ Y
Sbjct: 192 -------------------------------YKGKSKTIP-CFNPNTLLPDPLLRDYWVY 219
Query: 205 SGSLTTPPCSESVEWTVLYRTVGASRTQV 233
GSLT PPCSE V W + + S+ Q+
Sbjct: 220 EGSLTIPPCSEGVTWILFRYPLTISQLQI 248
>3b1b_A Carbonic anhydrase 1; N-glycosylation, zinc-finger, lyase; HET:
NAG; 1.88A {Chlamydomonas reinhardtii}
Length = 377
Score = 138 bits (349), Expect = 2e-39
Identities = 39/204 (19%), Positives = 68/204 (33%), Gaps = 50/204 (24%)
Query: 30 PFCAVVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWGGSEHTFNGQRLATEVHLVHYNSQ 89
P + E+ + HFH SEH G+ E+H+VH ++
Sbjct: 131 PAMHNQTNRIVDVLEMRPNDAADRVTAVPTQFHFHST-SEHLLAGKIYPLELHIVHQVTE 189
Query: 90 YESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQ 149
+ +V + L Q
Sbjct: 190 KL----EACKGGCFSVTGI--------------------------------------LFQ 207
Query: 150 MSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLT 209
+ + DN +L P+ +++ + + + + +LLP++R + Y GSLT
Sbjct: 208 LDNG-----PDNELLEPIFANM-PSREGTFSNLPAGTTIKLGELLPSDRD-YVTYEGSLT 260
Query: 210 TPPCSESVEWTVLYRTVGASRTQV 233
TPPCSE + W V+ + S Q
Sbjct: 261 TPPCSEGLLWHVMTQPQRISFGQW 284
>3q31_A Carbonic anhydrase; glysosy secreted, dimeric, lyase; HET: NAG;
2.70A {Aspergillus oryzae}
Length = 244
Score = 129 bits (327), Expect = 3e-37
Identities = 44/232 (18%), Positives = 69/232 (29%), Gaps = 65/232 (28%)
Query: 9 PGALQLLHTRLHSLIPL-FSYFPFCAVVLKLDQNEKEIGIAAGGLY---NYYILDSIHFH 64
P + + L L+ ++ + G L Y L HFH
Sbjct: 40 PIVIDSAAIDYAASGSLKLDLPLADGSKLENLGFGLQVTLTNGSLTANSKTYTLAQFHFH 99
Query: 65 WGGSEHTFNGQRLATEVHLVHYNSQYESLTEAKDEPRGLAVIAV--IIHETPEDNPILAP 122
SEH N + EVH V + AV+ + E + P+
Sbjct: 100 TP-SEHHVNEEHFPMEVHFVFQTAAK-----------ETAVVGFFFQLSEVGDSVPLFDS 147
Query: 123 LVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPEDNPILAPLVSSLGETIDDPGEST 182
+ + +D++ D G ST
Sbjct: 148 VFAPIDNIP---------------------------------------------DAGTST 162
Query: 183 SLPIPLAPSDLLPA-NRSAFFRYSGSLTTPPCSESVEWTVLYRTVGASRTQV 233
+ L LL NR ++Y+GSLTTPPC+E V W + + +
Sbjct: 163 TTG-QLDFGGLLDHFNRHGVYQYTGSLTTPPCTEEVMWNLSTEPLPLTVQGY 213
>1kop_A Carbonic anhydrase; lyase, structural trimming; 1.90A {Neisseria
gonorrhoeae} SCOP: b.74.1.1 PDB: 1koq_A
Length = 223
Score = 126 bits (318), Expect = 5e-36
Identities = 39/200 (19%), Positives = 60/200 (30%), Gaps = 66/200 (33%)
Query: 34 VVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWGGSEHTFNGQRLATEVHLVHYNSQYESL 93
+ + + + + Y L HFH SE+ G+ E H VH +
Sbjct: 65 IQVNYPEGGNTLTVNGR----TYTLKQFHFHVP-SENQIKGRTFPMEAHFVHLDENK--- 116
Query: 94 TEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSH 153
V+AV+ E + N L+ + + +
Sbjct: 117 --------QPLVLAVLY-EAGKTNGRLSSIWNVMPMT----------------------- 144
Query: 154 FQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPC 213
L P S LLP ++R++GSLTTPPC
Sbjct: 145 -------------------------AGKVKLNQPFDASTLLPKRLK-YYRFAGSLTTPPC 178
Query: 214 SESVEWTVLYRTVGASRTQV 233
+E V W VL + Q
Sbjct: 179 TEGVSWLVLKTYDHIDQAQA 198
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.041
Identities = 55/329 (16%), Positives = 99/329 (30%), Gaps = 112/329 (34%)
Query: 7 SRPGALQLLHTRL-HS-LIPLFSYFPFCAVVLKLDQNEKEIGIAAGGL------------ 52
+RP L L H L H L+P S+F A L+ +Q K + G
Sbjct: 6 TRP--LTLSHGSLEHVLLVPTASFFI--ASQLQ-EQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 53 ---YNYYILDSIHFHWGGS------------EHTFNGQRLA-TEVH-LVHYNSQYESLTE 95
+ Y+ + G E+ + L ++H L L +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY----LEGNDIHALAA------KLLQ 110
Query: 96 AKDEP--RGLAVI-----AVIIHETPEDNPILAPLVSSLD--------------HVTPW- 133
D + +I A I+ + P D + L ++ + +
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 134 --LR-CFCT-RLLIYTILLQMSSHFQE---TPEDNPILAP----LVSSLGETIDDPGES- 181
LR + T +L+ ++ + E T D + ++ L + P +
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 182 -TSLPI--PL------------------APSDLLPANRSAFFRYSGSLTTPPCSESVEWT 220
S+PI PL P +L + A G +T +E+ W
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 221 VLYRT----------VGASRTQVSNPIGS 239
+ + +G R + P S
Sbjct: 291 SFFVSVRKAITVLFFIGV-RCYEAYPNTS 318
Score = 31.9 bits (72), Expect = 0.22
Identities = 32/165 (19%), Positives = 51/165 (30%), Gaps = 65/165 (39%)
Query: 9 PGALQLLHTRLHSL----------IPL------FSY-F-----PF-------CAVVLKLD 39
P +L L+ L IP FS F PF + ++ D
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 40 QNEKEIGIAAGGL----YNYY---------------ILDSI---HFHWGGSEHTFNGQRL 77
+ + A + Y+ + I+D I W E T +
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW---ETTTQFK-- 497
Query: 78 ATEVHLVHY----NSQYESLTEAKDEPRGLAVIAVIIHETPEDNP 118
AT H++ + S LT + G + VI+ T + NP
Sbjct: 498 AT--HILDFGPGGASGLGVLTHRNKDGTG---VRVIVAGTLDINP 537
Score = 26.9 bits (59), Expect = 8.2
Identities = 23/142 (16%), Positives = 42/142 (29%), Gaps = 53/142 (37%)
Query: 53 YNYYILD-------SIHFHWGGSEHTFNGQRLATEVHLVHYNS-QYESLTEAKDEPRGL- 103
Y + ILD ++ H+GG G+R+ +Y++ +E++ + K + +
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGE----KGKRIR-----ENYSAMIFETIVDGKLKTEKIF 1707
Query: 104 ----AVIAVIIHETPED------N--PILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMS 151
+ + P L L+ +
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFTQPALT-LME------------------KAAFEDLK 1748
Query: 152 SHFQETPEDNPILAPLVSSLGE 173
S P D A SLGE
Sbjct: 1749 SKG-LIPADA-TFAGH--SLGE 1766
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.23
Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 54/198 (27%)
Query: 2 RRRSESRPGALQ-LLHTRLH--SLIPL--------FSYFPF-CAVVLKLDQNEKEIGIAA 49
+ R S L+ LL ++ + L+ L ++ F C ++L + ++ +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL-TTRFKQVTDFLS 282
Query: 50 GGLYNYYILDSIHFHWGGSEHTFNGQRLATEVHLVHY-NSQYESL-TEAKD-EPRGLAVI 106
+ LD H + + L+ Y + + + L E PR L++I
Sbjct: 283 AATTTHISLD--HHSMTLTPD-------EVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 107 AVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMS----------SHFQE 156
A I + W C +L T +++ S F
Sbjct: 334 AESIRDGL-------------ATWDNWKHVNCDKL---TTIIESSLNVLEPAEYRKMFDR 377
Query: 157 T---PEDNPILAPLVSSL 171
P I L+S +
Sbjct: 378 LSVFPPSAHIPTILLSLI 395
>1lkf_A LUKF, HLGB, leukocidin F subunit; leukotoxin, hemolysin,
pore-forming toxin; 1.90A {Staphylococcus aureus} SCOP:
f.6.1.1 PDB: 2lkf_A 3lkf_A* 3b07_A 2qk7_B 1pvl_A*
Length = 299
Score = 28.3 bits (62), Expect = 2.2
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 1 MRRRSESRPGALQLLHTRLHSLIPLFSYFPFCAVVLKLDQNEK---EIGIAAGGLYNYYI 57
+ R S + L+ ++ P VL Q+ +I + + Y
Sbjct: 194 LAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQ 253
Query: 58 LDSIHFHWGGSEHT 71
+ F+W G+ +
Sbjct: 254 IRWNGFYWAGANYK 267
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural
genomics, joint center for structural genomics; HET:
MSE; 2.35A {Haemophilus influenzae}
Length = 188
Score = 27.4 bits (61), Expect = 3.7
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 21/92 (22%)
Query: 43 KEIGIAAGGLYNYY-----ILDSIHFHWGGSEHTFNGQRLATEVHLVHYNSQYESLTEAK 97
KE +AAG +Y Y+ +L+ + + E K
Sbjct: 36 KEANVAAGTIYLYFKNKDELLEQFAHRV--------FSMFMATLE--------KDFDETK 79
Query: 98 DEPRGLAVIAVIIHETPEDNPILAPLVSSLDH 129
+ I ++NP + + +
Sbjct: 80 PFFEQYRQMWKNIWYFLQENPTILSNLKQYES 111
>3col_A Putative transcription regulator; structural genomics, PSI-2,
protein structure initiative, midwest CENT structural
genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum
WCFS1}
Length = 196
Score = 27.0 bits (60), Expect = 4.8
Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 19/93 (20%)
Query: 43 KEIGIAAGGLYNYY-----ILDSIHFHWGGSEHTFNGQRLATEVHLVHYNSQYESLTEAK 97
K +GIA +Y Y+ ++DS++ R+ + L + +T
Sbjct: 38 KRVGIAQSNVYLYFKNKQALIDSVYARE--------TNRILSTTDLDRLSDSTIDVTTR- 88
Query: 98 DEPRGLAVIAVIIHETPEDNPILAPLVSSLDHV 130
+ + +++ NP ++ + +
Sbjct: 89 -----IRLYVQQVYDYSLANPDSLTIIQQIKAL 116
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio
parahaemolytic structural genomics, PSI-2, protein
structure initiative; HET: MSE; 2.20A {Vibrio
parahaemolyticus}
Length = 196
Score = 26.5 bits (59), Expect = 6.3
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 43 KEIGIAAGGLYNYY-----ILDSIHFHW 65
E G+AAG +Y Y+ +L+ + +
Sbjct: 39 NEAGVAAGTIYRYFSDKEHLLEEVRLNV 66
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase;
1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Length = 163
Score = 26.1 bits (58), Expect = 8.5
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 37 KLDQNEKEIGIAAGGLYNYY 56
L+ EI + GG+ Y
Sbjct: 136 PLEDFLLEI-VREGGILEYI 154
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.414
Gapped
Lambda K H
0.267 0.0421 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,576,657
Number of extensions: 202204
Number of successful extensions: 505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 60
Length of query: 239
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 148
Effective length of database: 4,160,982
Effective search space: 615825336
Effective search space used: 615825336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)