RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12959
(239 letters)
>d1rj6a_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme XIV [TaxId: 10090]}
Length = 259
Score = 121 bits (303), Expect = 4e-34
Identities = 62/194 (31%), Positives = 85/194 (43%), Gaps = 53/194 (27%)
Query: 47 IAAGGLYNYYILDSIHFHWG------GSEHTFNGQRLATEVHLVHYNSQ-YESLTEAKDE 99
+ GGL Y +H HWG GSEH N + A E+H+VHY+SQ Y SL+EA +
Sbjct: 75 LHLGGLPRKYTAAQLHLHWGQRGSLEGSEHHINSEATAAELHVVHYDSQSYSSLSEAAQK 134
Query: 100 PRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPE 159
P+GLAV+ ++I +NP ++S L +
Sbjct: 135 PQGLAVLGILIEVGETENPAYDHILSRLHEIRY--------------------------- 167
Query: 160 DNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPCSESVEW 219
+ TS+P P + +L P FFRY+GSLTTPPC +SV W
Sbjct: 168 ------------------KDQKTSVP-PFSVRELFPQQLEQFFRYNGSLTTPPCYQSVLW 208
Query: 220 TVLYRTVGASRTQV 233
TV R S Q+
Sbjct: 209 TVFNRRAQISMGQL 222
>d1flja_ b.74.1.1 (A:) Carbonic anhydrase {Rat (Rattus norvegicus),
isozyme III [TaxId: 10116]}
Length = 259
Score = 114 bits (285), Expect = 2e-31
Identities = 52/205 (25%), Positives = 76/205 (37%), Gaps = 53/205 (25%)
Query: 34 VVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHYNS 88
+ D + G L Y L H HWG GSEHT +G + A E+HLVH+N
Sbjct: 65 CRVVFDDTFDRSMLRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNP 124
Query: 89 QYESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILL 148
+Y + EA +P G+AV+ + + + L+ +LD +
Sbjct: 125 KYNTFGEALKQPDGIAVVGIFLKIG-REKGEFQILLDALDKIK----------------- 166
Query: 149 QMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSL 208
G+ PS L PA R ++ Y GS
Sbjct: 167 ----------------------------TKGKEAPFN-HFDPSCLFPACRD-YWTYHGSF 196
Query: 209 TTPPCSESVEWTVLYRTVGASRTQV 233
TTPPC E + W +L + S Q+
Sbjct: 197 TTPPCEECIVWLLLKEPMTVSSDQM 221
>d1luga_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme II [TaxId: 9606]}
Length = 259
Score = 112 bits (281), Expect = 8e-31
Identities = 58/207 (28%), Positives = 83/207 (40%), Gaps = 53/207 (25%)
Query: 32 CAVVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHY 86
A ++ D ++ + + G L Y L HFHWG GSEHT + ++ A E+HLVH+
Sbjct: 63 HAFNVEFDDSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAELHLVHW 122
Query: 87 NSQYESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTI 146
N++Y +A +P GLAV+ + + + P L +V LD
Sbjct: 123 NTKYGDFGKAVQQPDGLAVLGIFL-KVGSAKPGLQKVVDVLDS----------------- 164
Query: 147 LLQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSG 206
I G+S P LLP + ++ Y G
Sbjct: 165 ----------------------------IKTKGKSADFT-NFDPRGLLPESLD-YWTYPG 194
Query: 207 SLTTPPCSESVEWTVLYRTVGASRTQV 233
SLTTPP E V W VL + S QV
Sbjct: 195 SLTTPPLLECVTWIVLKEPISVSSEQV 221
>d1jd0a_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme XII [TaxId: 9606]}
Length = 260
Score = 111 bits (279), Expect = 2e-30
Identities = 59/191 (30%), Positives = 80/191 (41%), Gaps = 54/191 (28%)
Query: 50 GGLYNYYILDSIHFHWG------GSEHTFNGQRLATEVHLVHYNSQ-YESLTEAKDEPRG 102
GL + Y +H HWG GSEHT +GQ A E+H+VHYNS Y + A ++ G
Sbjct: 77 QGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHYNSDLYPDASTASNKSEG 136
Query: 103 LAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPEDNP 162
LAV+AV+I NP + S L HV
Sbjct: 137 LAVLAVLIEMG-SFNPSYDKIFSHLQHVK------------------------------- 164
Query: 163 ILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPCSESVEWTVL 222
G+ +P +LLP + ++RY GSLTTPPC+ +V WTV
Sbjct: 165 --------------YKGQEAFVP-GFNIEELLPERTAEYYRYRGSLTTPPCNPTVLWTVF 209
Query: 223 YRTVGASRTQV 233
V S+ Q+
Sbjct: 210 RNPVQISQEQL 220
>d1keqa_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
liver, isozyme V [TaxId: 10090]}
Length = 238
Score = 110 bits (275), Expect = 4e-30
Identities = 65/208 (31%), Positives = 89/208 (42%), Gaps = 54/208 (25%)
Query: 33 AVVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHYN 87
A ++ D + ++ GI+ G L N+Y L HFHWG GSEH +G E+HLVH+N
Sbjct: 41 AFQVEFDDSCEDSGISGGPLGNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWN 100
Query: 88 S-QYESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTI 146
S +YE+ +A GLAVI V
Sbjct: 101 STKYENCKKASVGENGLAVIGV-------------------------------------- 122
Query: 147 LLQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYSG 206
F + + L LV L E + ++ P PS L+PA R ++ Y G
Sbjct: 123 -------FLKLGAHHQALQKLVDVLPE-VRHKDTQVAMG-PFDPSCLMPACRD-YWTYPG 172
Query: 207 SLTTPPCSESVEWTVLYRTVGASRTQVS 234
SLTTPP +ESV W V V S +Q+S
Sbjct: 173 SLTTPPLAESVTWIVQKTPVEVSPSQLS 200
>d1hcba_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme I [TaxId: 9606]}
Length = 258
Score = 110 bits (275), Expect = 5e-30
Identities = 56/209 (26%), Positives = 85/209 (40%), Gaps = 54/209 (25%)
Query: 32 CAVVLKLDQNEKEIGIAAGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHY 86
+ + + N+ + G + Y L HFHWG GSEHT +G + + E+H+ H+
Sbjct: 62 HSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHW 121
Query: 87 NSQ-YESLTEAKDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYT 145
NS Y SL EA + GLAVI V++ + E NP L ++ +L +
Sbjct: 122 NSAKYSSLAEAASKADGLAVIGVLM-KVGEANPKLQKVLDALQAIK-------------- 166
Query: 146 ILLQMSSHFQETPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSAFFRYS 205
G+ PS LLP++ F+ Y
Sbjct: 167 -------------------------------TKGKRAPFT-NFDPSTLLPSSLD-FWTYP 193
Query: 206 GSLTTPPCSESVEWTVLYRTVGASRTQVS 234
GSLT PP ESV W + ++ S Q++
Sbjct: 194 GSLTHPPLYESVTWIICKESISVSSEQLA 222
>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme IV [TaxId: 9606]}
Length = 262
Score = 106 bits (264), Expect = 3e-28
Identities = 54/196 (27%), Positives = 78/196 (39%), Gaps = 55/196 (28%)
Query: 47 IAAGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHYNSQY--ESLTEAKDE 99
I+ GGL Y +H HW GSEH+ +G+ A E+H+VH + ++ EA+D
Sbjct: 78 ISGGGLPAPYQAKQLHLHWSDLPYKGSEHSLDGEHFAMEMHIVHEKEKGTSRNVKEAQDP 137
Query: 100 PRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPE 159
+AV+A ++ + N PLV +L +
Sbjct: 138 EDEIAVLAFLVEAGTQVNEGFQPLVEALSN------------------------------ 167
Query: 160 DNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSA--FFRYSGSLTTPPCSESV 217
I P ST++ + DLLP +FRY GSLTTP C E V
Sbjct: 168 ---------------IPKPEMSTTMA-ESSLLDLLPKEEKLRHYFRYLGSLTTPTCDEKV 211
Query: 218 EWTVLYRTVGASRTQV 233
WTV + R Q+
Sbjct: 212 VWTVFREPIQLHREQI 227
>d2znca_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme IV [TaxId: 10090]}
Length = 258
Score = 101 bits (253), Expect = 9e-27
Identities = 48/199 (24%), Positives = 72/199 (36%), Gaps = 57/199 (28%)
Query: 42 EKEIGIAAGGLYNYYILDSIHFHWG-----GSEHTFNGQRLATEVHLVHYNSQYESLTEA 96
I G L Y +H HW GSEH+ +G+ A E+H+VH
Sbjct: 73 GGGACIIGGDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEMHIVHKKLTSSK---- 128
Query: 97 KDEPRGLAVIAVIIHETPEDNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQE 156
+D AV+A +I + N PLV +L
Sbjct: 129 EDSKDKFAVLAFMIEVGDKVNKGFQPLVEALPS--------------------------- 161
Query: 157 TPEDNPILAPLVSSLGETIDDPGESTSLPIPLAPSDLLPANRSA--FFRYSGSLTTPPCS 214
I P ++++ + D+LP + +FRY+GSLTTP C
Sbjct: 162 ------------------ISKPHSTSTVR-ESSLQDMLPPSTKMYTYFRYNGSLTTPNCD 202
Query: 215 ESVEWTVLYRTVGASRTQV 233
E+V WTV + + + Q
Sbjct: 203 ETVIWTVYKQPIKIHKNQF 221
>d1kopa_ b.74.1.1 (A:) Carbonic anhydrase {Neisseria gonorrhoeae
[TaxId: 485]}
Length = 223
Score = 79.5 bits (195), Expect = 9e-19
Identities = 38/179 (21%), Positives = 56/179 (31%), Gaps = 62/179 (34%)
Query: 56 YILDSIHFHWGGSEHTFNGQRLATEVHLVHYNSQYESLTEAKDEPRGLAVIAVIIHETPE 115
Y L HFH SE+ G+ E H VH + + L A +++E +
Sbjct: 83 YTLKQFHFHVP-SENQIKGRTFPMEAHFVHLDENKQPLVLA------------VLYEAGK 129
Query: 116 DNPILAPLVSSLDHVTPWLRCFCTRLLIYTILLQMSSHFQETPEDNPILAPLVSSLGETI 175
N L+ + + +
Sbjct: 130 TNGRLSSIWNVMPMTAGK------------------------------------------ 147
Query: 176 DDPGESTSLPIPLAPSDLLPANRSAFFRYSGSLTTPPCSESVEWTVLYRTVGASRTQVS 234
L P S LLP ++R++GSLTTPPC+E V W VL + Q
Sbjct: 148 ------VKLNQPFDASTLLPKRLK-YYRFAGSLTTPPCTEGVSWLVLKTYDHIDQAQAE 199
>d3lkfa_ f.6.1.1 (A:) Leukocidin F (HlgB) {Staphylococcus aureus
[TaxId: 1280]}
Length = 299
Score = 30.2 bits (68), Expect = 0.20
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 1 MRRRSESRPGALQLL-HTRLHSLIPLFSYF-PFCAVVLKLDQNEK---EIGIAAGGLYNY 55
+ R S + ++ L S F P VL Q+ +I + +
Sbjct: 194 LAGRQSSAYAGQNFIAQHQMPLLS--RSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDL 251
Query: 56 YILDSIHFHWGGSEHT 71
Y + F+W G+ +
Sbjct: 252 YQIRWNGFYWAGANYK 267
>d4sbva_ b.121.4.7 (A:) Sobemovirus coat protein {SBMV (Southern
bean mosaic virus), cow pea strain [TaxId: 12139]}
Length = 199
Score = 26.8 bits (59), Expect = 2.0
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 191 SDLLPANRSAFFRYSGSLTTPPCSES 216
+D LP + + G +T P
Sbjct: 79 ADTLPVSVNQLSNLKGYVTGPVWEGQ 104
>d1c8na_ b.121.4.7 (A:) Necrovirus coat protein {TNV (Tobacco
necrosis virus) [TaxId: 12054]}
Length = 189
Score = 26.8 bits (59), Expect = 2.0
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 190 PSDLLPANRSAFFRYSGSLTTPPCSESVEWTVL 222
+D+ P +R + ++ PP + +L
Sbjct: 75 RNDVAPGSRVQLSQTYKAINFPPYAGYDGAAIL 107
>d1smva_ b.121.4.7 (A:) Sobemovirus coat protein {SMV (Sesbania
mosaic virus) [TaxId: 12558]}
Length = 196
Score = 26.4 bits (58), Expect = 2.5
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 191 SDLLPANRSAFFRYSGSLTTPPCSESV 217
+D +P + + G ++ S S
Sbjct: 76 ADTVPVSVNKLSNLRGYVSGQVWSGSA 102
>d1opoa_ b.121.4.7 (A:) Carmovirus coat protein {CarMV (Carnation
mottle virus) [TaxId: 11986]}
Length = 267
Score = 26.0 bits (57), Expect = 4.3
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 190 PSDLLPANRSAFFRYSGSLTTPPCSESV 217
SD P + F+ + T +
Sbjct: 78 ASDTPPTTKVGFYDLGKHVETAAQTAKD 105
>d1f2na_ b.121.4.7 (A:) Sobemovirus coat protein {RYMV (Rice yellow
mottle virus) [TaxId: 31744]}
Length = 189
Score = 25.6 bits (56), Expect = 4.5
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 190 PSDLLPANRSAFFRYSGSLTTPPCSES 216
+D +P R +G +T+ +
Sbjct: 78 YADTIPRYTGKMSRTAGFVTSSVWYGA 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.414
Gapped
Lambda K H
0.267 0.0579 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 869,063
Number of extensions: 37630
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 24
Length of query: 239
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 156
Effective length of database: 1,268,006
Effective search space: 197808936
Effective search space used: 197808936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)