Query psy1296
Match_columns 283
No_of_seqs 163 out of 1603
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 15:32:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 3.1E-47 1E-51 333.2 18.7 233 2-281 4-241 (297)
2 2lck_A Mitochondrial uncouplin 100.0 1.2E-46 4E-51 330.5 18.9 231 7-281 3-234 (303)
3 2lck_A Mitochondrial uncouplin 100.0 7.8E-38 2.7E-42 274.3 15.4 187 3-231 102-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 2.3E-36 7.8E-41 264.2 15.0 184 5-229 112-297 (297)
5 2acm_A Mucin-1; auto-catalytic 25.0 13 0.00046 23.0 -0.3 19 85-103 41-59 (66)
6 4b19_A PEPA1; toxin, toxin apo 21.0 22 0.00076 18.7 0.1 24 249-272 3-26 (30)
7 3f2e_A SIRV coat protein; four 16.8 61 0.0021 21.2 1.5 34 179-212 6-43 (100)
8 1y9i_A Low temperature require 12.3 2.2E+02 0.0077 21.8 3.9 48 214-266 112-159 (178)
9 3tgu_G UQCRQ, mitochondrial ub 10.5 1.6E+02 0.0053 19.5 2.2 33 200-232 37-69 (81)
10 3i71_A Ethanolamine utilizatio 9.7 1.7E+02 0.0057 18.0 1.9 24 148-171 17-40 (68)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.1e-47 Score=333.24 Aligned_cols=233 Identities=20% Similarity=0.310 Sum_probs=198.7
Q ss_pred CCchhhHHHHHhHHHHhHhhhcCchhhhhhhhhccCCCCCCcccccccccccccCCccccccCCCCCCCCCccccccccC
Q psy1296 2 KIHPFQFFLAGGVGGALTVLVGHPFDTCKVRLQTANSKQPEYTASSFVGILYCTPIPLFYGRGEDSSFPILPSWWCRWSF 81 (283)
Q Consensus 2 ~~~~~~~~~~g~~a~~~~~~i~~Pld~vk~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (283)
+++.++++++|++||+++.++++|+|+||+|+|++...... ....
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~-----------------------------------~~~~ 48 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQI-----------------------------------SAEK 48 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSC-----------------------------------CGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccccc-----------------------------------cccc
Confidence 35678899999999999999999999999999997531100 0122
Q ss_pred CCCCHHHHHHHHHHhcCccccccCChHHHhhhhhhhhhhHHhHHHHHHhhcc-cccCCC--cchHHHHHHhHHHHHHHHH
Q psy1296 82 NCFGMLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGLKFFTN-EKNMGQ--LELWQYFLSGSLGGIVTAA 158 (283)
Q Consensus 82 ~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~~~~f~~y~~~~~~~~~-~~~~~~--~~~~~~~~~g~~ag~~~~~ 158 (283)
.|.+.++++++|+++||++|||||+.+++++.++.++++|++||.+|+.+.. .+.... ......+++|++||+++.+
T Consensus 49 ~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~ 128 (297)
T 1okc_A 49 QYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLC 128 (297)
T ss_dssp SCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 3559999999999999999999999999999999999999999999995433 221111 2346789999999999999
Q ss_pred hhCcHHHHHHHHhhccCC--CCcccccHHHHHHHHHHhhccccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCCCCc
Q psy1296 159 LVAPGERIKCLLQVQEGG--LSNVYSGPVDVIRKLIQQHGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVFSGQGDSV 236 (283)
Q Consensus 159 i~~Ple~vk~r~q~~~~~--~~~~y~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~f~~ye~lk~~~~~~~~~~ 236 (283)
+++|+|+||+|||++... ....|+++++++++|+++||++|||||+.+++++++++.+++|.+||.+|+.+.+..
T Consensus 129 ~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~--- 205 (297)
T 1okc_A 129 FVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--- 205 (297)
T ss_dssp HHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG---
T ss_pred HhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC---
Confidence 999999999999998542 346799999999999999999999999999999999999999999999999775421
Q ss_pred ccccccccCCcchHHHHhhhHHHHHHHHhhccchhhHhhhhhhhc
Q psy1296 237 IEVSDQTRKTTPLVGTITAGSMAGISYWIVVDSVDRRGESMYIVE 281 (283)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~t~Pldvvktr~q~~~ 281 (283)
+ .+....+++|++||++++++++|+||||||||++.
T Consensus 206 -~--------~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~ 241 (297)
T 1okc_A 206 -N--------VHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS 241 (297)
T ss_dssp -C--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred -C--------ccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence 1 12778899999999999999999999999999874
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.2e-46 Score=330.45 Aligned_cols=231 Identities=21% Similarity=0.278 Sum_probs=200.3
Q ss_pred hHHHHHhHHHHhHhhhcCchhhhhhhhhccCCCCCCcccccccccccccCCccccccCCCCCCCCCccccccccCCCCCH
Q psy1296 7 QFFLAGGVGGALTVLVGHPFDTCKVRLQTANSKQPEYTASSFVGILYCTPIPLFYGRGEDSSFPILPSWWCRWSFNCFGM 86 (283)
Q Consensus 7 ~~~~~g~~a~~~~~~i~~Pld~vk~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (283)
.++++|++||+++.++++|||+||+|+|++....... .......|.+.
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~--------------------------------~~~~~~~~~~~ 50 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLV--------------------------------RTAASAQYRGV 50 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHH--------------------------------HHCSCSSCSCH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhcccccc--------------------------------ccccCCCCCCH
Confidence 5789999999999999999999999999986421100 00012234599
Q ss_pred HHHHHHHHHhcCccccccCChHHHhhhhhhhhhhHHhHHHHHHhhcccccCCCcchHHHHHHhHHHHHHHHHhhCcHHHH
Q psy1296 87 LDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGLKFFTNEKNMGQLELWQYFLSGSLGGIVTAALVAPGERI 166 (283)
Q Consensus 87 ~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~Ple~v 166 (283)
++++++|+++||+++||||+.+++++.++.++++|++||.+|+.+.+.. ...+....+++|++||+++.++++|+|+|
T Consensus 51 ~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~--~~~~~~~~~~ag~~ag~~~~~~~~Pld~v 128 (303)
T 2lck_A 51 LGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGS--EHAGIGSRLLAGSTTGALAVAVAQPTDVV 128 (303)
T ss_dssp HHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCC--SSCCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cCCcHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 9999999999999999999999999999999999999999999987652 14667889999999999999999999999
Q ss_pred HHHHhhccCC-CCcccccHHHHHHHHHHhhccccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCCCCcccccccccC
Q psy1296 167 KCLLQVQEGG-LSNVYSGPVDVIRKLIQQHGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVFSGQGDSVIEVSDQTRK 245 (283)
Q Consensus 167 k~r~q~~~~~-~~~~y~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~f~~ye~lk~~~~~~~~~~~~~~~~~~~ 245 (283)
|+|+|++... ....|+++++++++|+++||++|||||+.++++++++..+++|.+||.+|+.+.+.....
T Consensus 129 ktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~--------- 199 (303)
T 2lck_A 129 KVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMT--------- 199 (303)
T ss_dssp HHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCC---------
T ss_pred HHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---------
Confidence 9999998642 345799999999999999999999999999999999999999999999999987643211
Q ss_pred CcchHHHHhhhHHHHHHHHhhccchhhHhhhhhhhc
Q psy1296 246 TTPLVGTITAGSMAGISYWIVVDSVDRRGESMYIVE 281 (283)
Q Consensus 246 ~~~~~~~~~~g~~a~~~~~~~t~Pldvvktr~q~~~ 281 (283)
.+....+++|++||++++++++|+||||||||+++
T Consensus 200 -~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~ 234 (303)
T 2lck_A 200 -DDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA 234 (303)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred -CchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc
Confidence 12678899999999999999999999999999875
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=7.8e-38 Score=274.31 Aligned_cols=187 Identities=21% Similarity=0.250 Sum_probs=168.2
Q ss_pred CchhhHHHHHhHHHHhHhhhcCchhhhhhhhhccCCCCCCcccccccccccccCCccccccCCCCCCCCCccccccccCC
Q psy1296 3 IHPFQFFLAGGVGGALTVLVGHPFDTCKVRLQTANSKQPEYTASSFVGILYCTPIPLFYGRGEDSSFPILPSWWCRWSFN 82 (283)
Q Consensus 3 ~~~~~~~~~g~~a~~~~~~i~~Pld~vk~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (283)
.+.+..+++|++||+++.++++|+|+||+|+|++.... ...+
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~--------------------------------------~~~~ 143 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG--------------------------------------GGRR 143 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCC--------------------------------------CSSS
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccC--------------------------------------CCCC
Confidence 46678899999999999999999999999999986310 0122
Q ss_pred CCCHHHHHHHHHHhcCccccccCChHHHhhhhhhhhhhHHhHHHHHHhhcccccCCCcchHHHHHHhHHHHHHHHHhhCc
Q psy1296 83 CFGMLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGLKFFTNEKNMGQLELWQYFLSGSLGGIVTAALVAP 162 (283)
Q Consensus 83 ~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~P 162 (283)
|.+.++++++|+++||++|||||+.+++++.++.++++|.+||.+|+.+.+.. ....+....+++|++||+++.++++|
T Consensus 144 ~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~-~~~~~~~~~~~~g~~ag~~~~~~~~P 222 (303)
T 2lck_A 144 YQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN-LMTDDLPCHFTSAFGAGFCTTVIASP 222 (303)
T ss_dssp CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT-SCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCchHHHHHHHHHHHHHHHHHcCH
Confidence 34999999999999999999999999999999999999999999999987654 33456678899999999999999999
Q ss_pred HHHHHHHHhhccCCCCcccccHHHHHHHHHHhhccccccccchhhhhhhhhhhhhHHHHHHHHHHhhcc
Q psy1296 163 GERIKCLLQVQEGGLSNVYSGPVDVIRKLIQQHGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVFSG 231 (283)
Q Consensus 163 le~vk~r~q~~~~~~~~~y~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~f~~ye~lk~~~~~ 231 (283)
+|+||+|||++.. ..|+++++++++|+++||++|||||+.|+++|.+|..+++|.+||.+|+.+.+
T Consensus 223 ~dvvktrlq~~~~---~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 223 VDVVKTRYMNSAL---GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHTTCCS---SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHhccc---cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999864 56999999999999999999999999999999999999999999999998765
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.3e-36 Score=264.22 Aligned_cols=184 Identities=22% Similarity=0.362 Sum_probs=157.7
Q ss_pred hhhHHHHHhHHHHhHhhhcCchhhhhhhhhccCCCCCCcccccccccccccCCccccccCCCCCCCCCccccccccCCCC
Q psy1296 5 PFQFFLAGGVGGALTVLVGHPFDTCKVRLQTANSKQPEYTASSFVGILYCTPIPLFYGRGEDSSFPILPSWWCRWSFNCF 84 (283)
Q Consensus 5 ~~~~~~~g~~a~~~~~~i~~Pld~vk~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (283)
.+..+++|++||+++.++++|+|+||+|+|++..... ...+|.
T Consensus 112 ~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~-------------------------------------~~~~~~ 154 (297)
T 1okc_A 112 FAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGA-------------------------------------AQREFT 154 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSST-------------------------------------TTCSCS
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCC-------------------------------------cCcCCC
Confidence 3568899999999999999999999999999753110 012344
Q ss_pred CHHHHHHHHHHhcCccccccCChHHHhhhhhhhhhhHHhHHHHHHhhcccccCCCcchHHHHHHhHHHHHHHHHhhCcHH
Q psy1296 85 GMLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGLKFFTNEKNMGQLELWQYFLSGSLGGIVTAALVAPGE 164 (283)
Q Consensus 85 ~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~Ple 164 (283)
++++++++|+++||++|||||+.+++++.++.++++|.+||.+|+.+.+.. ..+....+++|++||+++.++++|+|
T Consensus 155 ~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~---~~~~~~~~~~g~~ag~~a~~~t~P~d 231 (297)
T 1okc_A 155 GLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK---NVHIIVSWMIAQTVTAVAGLVSYPFD 231 (297)
T ss_dssp SHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG---CSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC---CccHHHHHHHHHHHHHHHHHhcChHH
Confidence 999999999999999999999999999999999999999999999886543 34567889999999999999999999
Q ss_pred HHHHHHhhccCC--CCcccccHHHHHHHHHHhhccccccccchhhhhhhhhhhhhHHHHHHHHHHhh
Q psy1296 165 RIKCLLQVQEGG--LSNVYSGPVDVIRKLIQQHGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVF 229 (283)
Q Consensus 165 ~vk~r~q~~~~~--~~~~y~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~f~~ye~lk~~~ 229 (283)
+||+|||++... ....|+++++|+++|+++||++|||||+.|+++|. +..+++|.+||.+|+.+
T Consensus 232 vvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 232 TVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 999999997542 23479999999999999999999999999999996 46799999999998753
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=24.98 E-value=13 Score=23.01 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHhcCccccc
Q psy1296 85 GMLDCVTKILQKEKIFGFY 103 (283)
Q Consensus 85 ~~~~~~~~i~~~~G~~~ly 103 (283)
++...+.+||+++++.||+
T Consensus 41 ~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 41 DISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHccCCeeeee
Confidence 6788899999999999886
No 6
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=20.99 E-value=22 Score=18.74 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=19.2
Q ss_pred hHHHHhhhHHHHHHHHhhccchhh
Q psy1296 249 LVGTITAGSMAGISYWIVVDSVDR 272 (283)
Q Consensus 249 ~~~~~~~g~~a~~~~~~~t~Pldv 272 (283)
.+.++++-.++|++-++++|-|+.
T Consensus 3 ifv~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 3 IFVHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp GGTSSTTTTHHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHHHHHHHHh
Confidence 455667778899999999998875
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=16.82 E-value=61 Score=21.21 Aligned_cols=34 Identities=15% Similarity=0.490 Sum_probs=23.4
Q ss_pred cccccHHHHHHHHHHhhcccc----ccccchhhhhhhh
Q psy1296 179 NVYSGPVDVIRKLIQQHGLGS----VFKGFSATLLRDV 212 (283)
Q Consensus 179 ~~y~~~~~~~~~i~~~~G~~g----ly~G~~~~l~~~~ 212 (283)
+++.+.-+-+..+..+-|+.| .|.||+..+.|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 466777777777788888744 7888888766654
No 8
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=12.32 E-value=2.2e+02 Score=21.83 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHHHHhhccCCCCcccccccccCCcchHHHHhhhHHHHHHHHhh
Q psy1296 214 AFGAYYAMYETVKHVFSGQGDSVIEVSDQTRKTTPLVGTITAGSMAGISYWIV 266 (283)
Q Consensus 214 ~~~~~f~~ye~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~ 266 (283)
...+.|-.||..|.+.-..-...... .--.++-.+++|.+|++++.++
T Consensus 112 ~gf~~Fr~fDi~KPgpI~~ld~~~~g-----g~gimlDDivAgi~A~~~~~l~ 159 (178)
T 1y9i_A 112 IGFTNYGYIDKVKPGILAKLNEHDGI-----AVHTFLDDIVGAIAAAAASRLA 159 (178)
T ss_dssp GGHHHHHHHHHHCCTHHHHTTCCCSS-----CCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHhhhcccCC-----CCcchHHHHHHHHHHHHHHHHH
Confidence 34566888999997654321111000 0112788888888888766443
No 9
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=10.49 E-value=1.6e+02 Score=19.49 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=25.3
Q ss_pred ccccchhhhhhhhhhhhhHHHHHHHHHHhhccC
Q psy1296 200 VFKGFSATLLRDVPAFGAYYAMYETVKHVFSGQ 232 (283)
Q Consensus 200 ly~G~~~~l~~~~~~~~~~f~~ye~lk~~~~~~ 232 (283)
.||-+...++..+|...+.+.+|+..++.-...
T Consensus 37 ~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 37 VWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344445677888899999999999998887654
No 10
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=9.72 E-value=1.7e+02 Score=18.00 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.3
Q ss_pred HhHHHHHHHHHhhCcHHHHHHHHh
Q psy1296 148 SGSLGGIVTAALVAPGERIKCLLQ 171 (283)
Q Consensus 148 ~g~~ag~~~~~i~~Ple~vk~r~q 171 (283)
-|+.+|=+++-+-.|+|..|..+.
T Consensus 17 QGMTaGEVAA~f~w~Le~ar~aLe 40 (68)
T 3i71_A 17 QGMTAGEVAAHFGWPLEKARNALE 40 (68)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred ccccHHHHHHHhCCcHHHHHHHHH
Confidence 378899999999999999987663
Done!