RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1296
(283 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 95.0 bits (237), Expect = 7e-25
Identities = 28/94 (29%), Positives = 45/94 (47%)
Query: 138 GQLELWQYFLSGSLGGIVTAALVAPGERIKCLLQVQEGGLSNVYSGPVDVIRKLIQQHGL 197
L L+G + G + A + P + +K LQ G S Y G +D +K+ ++ G+
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGI 60
Query: 198 GSVFKGFSATLLRDVPAFGAYYAMYETVKHVFSG 231
++KG LLR PA Y+ YET+K +
Sbjct: 61 RGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLK 94
Score = 73.4 bits (181), Expect = 9e-17
Identities = 34/136 (25%), Positives = 50/136 (36%), Gaps = 41/136 (30%)
Query: 1 EKIHPFQFFLAGGVGGALTVLVGHPFDTCKVRLQTANSKQP-EYTASSFVGILYCTPIPL 59
+ LAGG+ GA+ V +P D K RLQ++ + +Y
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYK--------------- 45
Query: 60 FYGRGEDSSFPILPSWWCRWSFNCFGMLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNAL 119
G+LDC KI ++E I G YKG+ L+ VAP A+
Sbjct: 46 -------------------------GILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAI 80
Query: 120 NYFGYGTGLKFFTNEK 135
+ Y T K +
Sbjct: 81 YFGTYETLKKLLLKKL 96
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 52.1 bits (125), Expect = 8e-08
Identities = 50/231 (21%), Positives = 98/231 (42%), Gaps = 46/231 (19%)
Query: 9 FLAGGVGGALTVLVGHPFDTCKVRLQTANSKQPEYTASSFVGILYCTPIPLFYGRGEDSS 68
FL GG+ A++ P + K+ +QT +DS
Sbjct: 11 FLMGGISAAISKTAVAPIERVKMLIQT-----------------------------QDSI 41
Query: 69 FPILPSWWCRWSFNCFGMLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGL 128
I R+S G+++C ++ +++ + ++G A ++ P A N F +
Sbjct: 42 PEIKSGKVPRYS----GIVNCFRRVSKEQGVLSLWRGNTANVIRYFPTQAFN-FAFKDYF 96
Query: 129 K--FFTNEKNMGQLELWQYF----LSGSLGGIVTAALVAPGE--RIKCLLQVQEGGLSNV 180
K F + + W++F LSG L G + +V P + R + + +GG
Sbjct: 97 KNMFPKYNQKT---DFWKFFGVNILSGGLAGASSLLIVYPLDFARTRLASDIGKGG-DRE 152
Query: 181 YSGPVDVIRKLIQQHGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVFSG 231
++G D + K+ +Q G S+++GF ++ + GAY+ +Y++ K + G
Sbjct: 153 FTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFG 203
Score = 52.1 bits (125), Expect = 9e-08
Identities = 51/214 (23%), Positives = 90/214 (42%), Gaps = 53/214 (24%)
Query: 7 QFF----LAGGVGGALTVLVGHPFDTCKVRLQTANSKQPEYTASSFVGILYCTPIPLFYG 62
+FF L+GG+ GA ++L+ +P D + RL + G
Sbjct: 111 KFFGVNILSGGLAGASSLLIVYPLDFARTRLASD------------------------IG 146
Query: 63 RGEDSSFPILPSWWCRWSFNCFGMLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYF 122
+G D F G+ DC+ KI ++ Y+G G + G+ YF
Sbjct: 147 KGGDREFT--------------GLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRG-AYF 191
Query: 123 GYGTGLK--FFTNEKNMGQLELWQYFLSGSLGGIVTAALVA-PGERIK---CLLQVQEGG 176
G K F N+KN L W ++ ++ + A L++ P + ++ ++ ++
Sbjct: 192 GLYDSAKALLFGNDKNTNILYKW--AVAQTV--TILAGLISYPFDTVRRRMMMMSGRKAK 247
Query: 177 LSNVYSGPVDVIRKLIQQHGLGSVFKGFSATLLR 210
Y+G +D +K+++ GLG FKG A +LR
Sbjct: 248 SEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLR 281
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 37.6 bits (87), Expect = 0.005
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 22/151 (14%)
Query: 87 LDCVTKILQKEKIFGF------YKGMGAPLVGVAPLNALNYFGYGTGLKFFT-NEKNMGQ 139
+D + +Q +K F F Y G+ LVG P +A Y Y K T +N+ +
Sbjct: 24 IDSIKTNIQAKKSFSFSDIKKLYSGILPTLVGTVPASAFFYCFYELSKKLLTEYRENISK 83
Query: 140 LELWQYFLSGSLGGIVTAALVAPGERIKCLLQVQEGGLSNVYSGPVDVIR---KLIQQHG 196
L Y +S S+ I + P E +K +QV SG + V++ ++ Q+ G
Sbjct: 84 TNL--YLISTSIAEITACIVRLPFEIVKQNMQV---------SGNISVLKTIYEITQREG 132
Query: 197 LGS-VFKGFSATLLRDVPAFGAYYAMYETVK 226
L S + K + ++R++P Y ++ET+K
Sbjct: 133 LPSFLGKSYFVMIVREIPFDCIQYFLWETLK 163
Score = 28.7 bits (64), Expect = 3.1
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 140 LELWQYFLSGSLGGIVTAALVAPGERIKCLLQVQEGGLSNVYSGPVDVIRKLIQQHGLGS 199
+E + ++G+L G++ A++ P + IK +Q ++ S I+KL
Sbjct: 1 MEHFHNLVTGALSGVIVDAVLYPIDSIKTNIQAKK-------SFSFSDIKKL-------- 45
Query: 200 VFKGFSATLLRDVPAFGAYYAMYETVKHVFS 230
+ G TL+ VPA +Y YE K + +
Sbjct: 46 -YSGILPTLVGTVPASAFFYCFYELSKKLLT 75
>gnl|CDD|183144 PRK11460, PRK11460, putative hydrolase; Provisional.
Length = 232
Score = 28.5 bits (64), Expect = 3.1
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 22/78 (28%)
Query: 185 VDVIRKLIQQHGLG---SVFKGFSA-------------TLLRDVPAFGAYYA------MY 222
++ +R QQ G+G + GFS L V AF YA
Sbjct: 88 IETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYASLPETAPT 147
Query: 223 ETVKHVFSGQGDSVIEVS 240
T H+ G D VI+V+
Sbjct: 148 ATTIHLIHGGEDPVIDVA 165
>gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7. These proteins are
members of the classical SDR family, with a canonical
active site triad (and also an active site Asn) and a
typical Gly-rich NAD-binding motif. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold (alpha/beta folding pattern with a central
beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRS are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes have a
3-glycine N-terminal NAD(P)(H)-binding pattern
(typically, TGxxxGxG in classical SDRs and TGxxGxxG in
extended SDRs), while substrate binding is in the
C-terminal region. A critical catalytic Tyr residue
(Tyr-151, human 15-hydroxyprostaglandin dehydrogenase
(15-PGDH) numbering), is often found in a conserved
YXXXK pattern. In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) or additional
Ser, contributing to the active site. Substrates for
these enzymes include sugars, steroids, alcohols, and
aromatic compounds. The standard reaction mechanism is a
proton relay involving the conserved Tyr and Lys, as
well as Asn (or Ser). Some SDR family members, including
17 beta-hydroxysteroid dehydrogenase contain an
additional helix-turn-helix motif that is not generally
found among SDRs.
Length = 235
Score = 28.5 bits (64), Expect = 3.2
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 179 NVYSGPVDVIRKL---IQQHGLGSVFKGFSATLLRDVPAFGAY-------YAMYETVKHV 228
NV+ G + + + ++ +G G++ S L++ PA G Y Y++ + ++
Sbjct: 106 NVF-GLLRLAQAFAPVLKANGGGAIVNLNSVASLKNFPAMGTYSASKSAAYSLTQGLRAE 164
Query: 229 FSGQGDSVIEV 239
+ QG V+ V
Sbjct: 165 LAAQGTLVLSV 175
>gnl|CDD|217337 pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase
proteins are necessary for efficient DNA transposition.
This family includes IS66 from Agrobacterium
tumefaciens.
Length = 277
Score = 27.6 bits (62), Expect = 8.6
Identities = 8/41 (19%), Positives = 11/41 (26%), Gaps = 7/41 (17%)
Query: 189 RKLIQQHGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVF 229
+ Q GF L D + Y + V H
Sbjct: 111 GEHPQAL-----LGGFRGVLQTD--GYAGYNKLTGDVTHAG 144
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.440
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,607,662
Number of extensions: 1379329
Number of successful extensions: 1240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1235
Number of HSP's successfully gapped: 20
Length of query: 283
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 187
Effective length of database: 6,679,618
Effective search space: 1249088566
Effective search space used: 1249088566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)