RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1296
         (283 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 67.4 bits (163), Expect = 1e-13
 Identities = 52/283 (18%), Positives = 107/283 (37%), Gaps = 40/283 (14%)

Query: 1   EKIHPFQFFLAGGVGGALTVLVGHPFDTCKVRLQTANSKQPEYTASSFVGILYCTPIPLF 60
           + +   + FLAGGV  A++     P +  K+ LQ  ++ +       +            
Sbjct: 2   QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQY------------ 49

Query: 61  YGRGEDSSFPILPSWWCRWSFNCFGMLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALN 120
                                   G++DCV +I +++    F++G  A ++   P  ALN
Sbjct: 50  -----------------------KGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALN 86

Query: 121 YFGYGTGLKFFTNEKNMGQ---LELWQYFLSGSLGGIVTAALVAPGERIKCLL--QVQEG 175
           +       + F    +  +           SG   G  +   V P +  +  L   V +G
Sbjct: 87  FAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG 146

Query: 176 GLSNVYSGPVDVIRKLIQQHGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVFSGQGDS 235
                ++G  + I K+ +  GL  +++GF+ ++   +    AY+ +Y+T K +     + 
Sbjct: 147 AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNV 206

Query: 236 VIEVSDQTRKTTPLVGTITAGSMAGISYWIVVDSVDRRGESMY 278
            I VS    +T   V  + +     +   +++ S  +  + MY
Sbjct: 207 HIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMY 249



 Score = 59.3 bits (142), Expect = 6e-11
 Identities = 30/154 (19%), Positives = 62/154 (40%), Gaps = 6/154 (3%)

Query: 74  SWWCRWSFNCFGMLDCVTKILQKEKIFGFYKGMGAPLVGVAPLNALNYFGYGTGLKFFTN 133
                      G+ +C+TKI + + + G Y+G    + G+    A  +  Y T       
Sbjct: 143 VGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDT---AKGM 199

Query: 134 EKNMGQLELWQYFLSGSLGGIVTAALVAPGERIKCLLQVQEG--GLSNVYSGPVDVIRKL 191
             +   + +   ++       V   +  P + ++  + +Q G  G   +Y+G VD  RK+
Sbjct: 200 LPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKI 259

Query: 192 IQQHGLGSVFKGFSATLLRDVPAFGAYYAMYETV 225
            +  G  + FKG  + +LR +        +Y+ +
Sbjct: 260 AKDEGPKAFFKGAWSNVLRGMGG-AFVLVLYDEI 292


>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of
           cytochrome bc1 complex (Ubiquinol-cytochrome c
           reductase) {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 93

 Score = 27.0 bits (60), Expect = 1.1
 Identities = 5/35 (14%), Positives = 14/35 (40%)

Query: 195 HGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVF 229
           + + + F+ F +  L  +   G Y+  ++      
Sbjct: 42  NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYN 76


>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of
           cytochrome bc1 complex (Ubiquinol-cytochrome c
           reductase) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 75

 Score = 26.2 bits (58), Expect = 1.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 195 HGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHVF 229
            G+ +V +   A +LR  P F A+Y +Y      F
Sbjct: 32  KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66


>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera
           [TaxId: 350]}
          Length = 268

 Score = 26.2 bits (57), Expect = 4.0
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 12/57 (21%)

Query: 218 YYAMYETVKHVFSGQGDSVIEVSDQTRKTTPL------------VGTITAGSMAGIS 262
            +        V   +GD  ++  +  R    L             GT+TAG+ +G++
Sbjct: 194 RFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLN 250


>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase
           {Pseudaminobacter salicylatoxidans [TaxId: 93369]}
          Length = 351

 Score = 25.5 bits (55), Expect = 8.4
 Identities = 16/70 (22%), Positives = 20/70 (28%)

Query: 169 LLQVQEGGLSNVYSGPVDVIRKLIQQHGLGSVFKGFSATLLRDVPAFGAYYAMYETVKHV 228
           LL   EG  + V  G   +        G            LR          +  TV  V
Sbjct: 230 LLLEDEGQPATVAPGHAAIRYVNPTTGGDVMPTLRCEFHRLRAGTETATRNEVGSTVFQV 289

Query: 229 FSGQGDSVIE 238
           F G G  V+ 
Sbjct: 290 FEGAGAVVMN 299


>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase
           {Escherichia coli [TaxId: 562]}
          Length = 80

 Score = 23.8 bits (51), Expect = 9.8
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 246 TTPLVGTITAGSMAGISYWIVVDSVDRRGESMYIVE 281
            +P+VGT           +I V      G+++ IVE
Sbjct: 8   RSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVE 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.141    0.440 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,078,683
Number of extensions: 48476
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 8
Length of query: 283
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,254,276
Effective search space: 249600924
Effective search space used: 249600924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)