BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12961
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GK1|A Chain A, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|C Chain C, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|E Chain E, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|G Chain G, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GJX|A Chain A, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|D Chain D, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|E Chain E, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|H Chain H, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 172/322 (53%), Gaps = 67/322 (20%)
Query: 2 KGSFHRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGER 61
KGS++ +YT +D+K +IEY + + D PG H+L
Sbjct: 202 KGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDT---PG----HTL------------ 242
Query: 62 VDESNVESRIWPRGAAIAERLWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSY 121
SWG G P LL T +GP++P+ +++Y
Sbjct: 243 ----------------------SWGPGIPGLLTPCYSGSEPSGT----FGPVNPSLNNTY 276
Query: 122 DFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGW--DGQQLQSYYTRR 179
+F+ F EV SVF D +LH GGDEVDF CW ++P I+ F+ +G+ D +QL+S+Y +
Sbjct: 277 EFMSTFFLEVSSVFPDFYLHLGGDEVDFTCWKSNPEIQDFMRKKGFGEDFKQLESFYIQT 336
Query: 180 ALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDL-------LNRITRDG 232
L I G +VWQEV++N ++ PDT++QVW R D+ L +T+ G
Sbjct: 337 LLDIVSSYGKGYVVWQEVFDN----KVKIQPDTIIQVW---REDIPVNYMKELELVTKAG 389
Query: 233 YTAITSAGWYLDVLDIRDGYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVD 292
+ A+ SA WYL+ R YG +W+ +Y ++P F GTPEQ +LV+GGEAC+WGE VD
Sbjct: 390 FRALLSAPWYLN----RISYG--PDWKDFYVVEPLAFEGTPEQKALVIGGEACMWGEYVD 443
Query: 293 ESNVESRIWPRGAAIAERLWSN 314
+N+ R+WPR A+AERLWSN
Sbjct: 444 NTNLVPRLWPRAGAVAERLWSN 465
>pdb|1O7A|A Chain A, Human Beta-Hexosaminidase B
pdb|1O7A|B Chain B, Human Beta-Hexosaminidase B
pdb|1O7A|C Chain C, Human Beta-Hexosaminidase B
pdb|1O7A|D Chain D, Human Beta-Hexosaminidase B
pdb|1O7A|E Chain E, Human Beta-Hexosaminidase B
pdb|1O7A|F Chain F, Human Beta-Hexosaminidase B
Length = 515
Score = 191 bits (486), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 178/318 (55%), Gaps = 61/318 (19%)
Query: 1 NKGSFHRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQ-EFPGTPEQHSLVLGGEACIWG 59
NKGS+ + VYT D++ +IEY R R+ P+ + PG H+L
Sbjct: 215 NKGSYSLSH-VYTPNDVRMVIEYARL----RGIRVLPEFDTPG----HTL---------- 255
Query: 60 ERVDESNVESRIWPRGAAIAERLWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSS 119
SWG G +LL L++ +GPI+PT ++
Sbjct: 256 ------------------------SWGKGQKDLLTPCYSRQNKLDS----FGPINPTLNT 287
Query: 120 SYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGW--DGQQLQSYYT 177
+Y F+ F E+ VF D+F+H GGDEV+F CW ++P I+ F+ +G+ D ++L+S+Y
Sbjct: 288 TYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYI 347
Query: 178 RRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNR-NDLLNRITRDGYTAI 236
++ L I + SIVWQEV++ + ++ P T+V+VW + + L+R+T G+ I
Sbjct: 348 QKVLDIIATINKGSIVWQEVFD----DKAKLAPGTIVEVWKDSAYPEELSRVTASGFPVI 403
Query: 237 TSAGWYLDVLDIRDGYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNV 296
SA WYLD++ YG Q+W++YY+++P +F GT +Q L +GGEAC+WGE VD +N+
Sbjct: 404 LSAPWYLDLI----SYG--QDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNL 457
Query: 297 ESRIWPRGAAIAERLWSN 314
R+WPR +A+ ERLWS+
Sbjct: 458 TPRLWPRASAVGERLWSS 475
>pdb|3LMY|A Chain A, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
pdb|3LMY|B Chain B, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
Length = 556
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 178/318 (55%), Gaps = 61/318 (19%)
Query: 1 NKGSFHRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQ-EFPGTPEQHSLVLGGEACIWG 59
NKGS+ + VYT D++ +IEY R R+ P+ + PG H+L
Sbjct: 256 NKGSYSLSH-VYTPNDVRMVIEYARL----RGIRVLPEFDTPG----HTL---------- 296
Query: 60 ERVDESNVESRIWPRGAAIAERLWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSS 119
SWG G +LL L++ +GPI+PT ++
Sbjct: 297 ------------------------SWGKGQKDLLTPCYSRQNKLDS----FGPINPTLNT 328
Query: 120 SYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGW--DGQQLQSYYT 177
+Y F+ F E+ VF D+F+H GGDEV+F CW ++P I+ F+ +G+ D ++L+S+Y
Sbjct: 329 TYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYI 388
Query: 178 RRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNR-NDLLNRITRDGYTAI 236
++ L I + SIVWQEV++ + ++ P T+V+VW + + L+R+T G+ I
Sbjct: 389 QKVLDIIATINKGSIVWQEVFD----DKAKLAPGTIVEVWKDSAYPEELSRVTASGFPVI 444
Query: 237 TSAGWYLDVLDIRDGYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNV 296
SA WYLD++ YG Q+W++YY+++P +F GT +Q L +GGEAC+WGE VD +N+
Sbjct: 445 LSAPWYLDLI----SYG--QDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNL 498
Query: 297 ESRIWPRGAAIAERLWSN 314
R+WPR +A+ ERLWS+
Sbjct: 499 TPRLWPRASAVGERLWSS 516
>pdb|2GK1|B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|D Chain D, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|F Chain F, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|H Chain H, X-Ray Crystal Structure Of Ngt-Bound Hexa
Length = 503
Score = 191 bits (484), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 151/234 (64%), Gaps = 17/234 (7%)
Query: 84 SWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTG 143
SWG G +LL L++ +GPI+PT +++Y F+ F E+ VF D+F+H G
Sbjct: 248 SWGKGQKDLLTPCYSRQNKLDS----FGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLG 303
Query: 144 GDEVDFYCWLNDPNIRQFLADRGW--DGQQLQSYYTRRALAIAKQLGFTSIVWQEVYENW 201
GDEV+F CW ++P I+ F+ +G+ D ++L+S+Y ++ L I + SIVWQEV++
Sbjct: 304 GDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIVWQEVFD-- 361
Query: 202 RSESRRMDPDTVVQVWYGNR-NDLLNRITRDGYTAITSAGWYLDVLDIRDGYGWQQEWQR 260
+ ++ P T+V+VW + + L+R+T G+ I SA WYLD++ YG Q+W++
Sbjct: 362 --DKAKLAPGTIVEVWKDSAYPEELSRVTASGFPVILSAPWYLDLI----SYG--QDWRK 413
Query: 261 YYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSN 314
YY+++P +F GT +Q L +GGEAC+WGE VD +N+ R+WPR +A+ ERLWS+
Sbjct: 414 YYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERLWSS 467
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 50/65 (76%), Gaps = 2/65 (3%)
Query: 20 IIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIA 79
+I YG Q+W++YY+++P +F GT +Q L +GGEAC+WGE VD +N+ R+WPR +A+
Sbjct: 404 LISYG--QDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVG 461
Query: 80 ERLWS 84
ERLWS
Sbjct: 462 ERLWS 466
>pdb|1NOU|A Chain A, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOU|B Chain B, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOW|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NOW|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NP0|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|1NP0|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|2GJX|B Chain B, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|C Chain C, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|F Chain F, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|G Chain G, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 191 bits (484), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 151/234 (64%), Gaps = 17/234 (7%)
Query: 84 SWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTG 143
SWG G +LL L++ +GPI+PT +++Y F+ F E+ VF D+F+H G
Sbjct: 248 SWGKGQKDLLTPCYSRQNKLDS----FGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLG 303
Query: 144 GDEVDFYCWLNDPNIRQFLADRGW--DGQQLQSYYTRRALAIAKQLGFTSIVWQEVYENW 201
GDEV+F CW ++P I+ F+ +G+ D ++L+S+Y ++ L I + SIVWQEV++
Sbjct: 304 GDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIVWQEVFD-- 361
Query: 202 RSESRRMDPDTVVQVWYGNR-NDLLNRITRDGYTAITSAGWYLDVLDIRDGYGWQQEWQR 260
+ ++ P T+V+VW + + L+R+T G+ I SA WYLD++ YG Q+W++
Sbjct: 362 --DKAKLAPGTIVEVWKDSAYPEELSRVTASGFPVILSAPWYLDLI----SYG--QDWRK 413
Query: 261 YYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSN 314
YY+++P +F GT +Q L +GGEAC+WGE VD +N+ R+WPR +A+ ERLWS+
Sbjct: 414 YYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERLWSS 467
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 50/65 (76%), Gaps = 2/65 (3%)
Query: 20 IIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIA 79
+I YG Q+W++YY+++P +F GT +Q L +GGEAC+WGE VD +N+ R+WPR +A+
Sbjct: 404 LISYG--QDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVG 461
Query: 80 ERLWS 84
ERLWS
Sbjct: 462 ERLWS 466
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 30/226 (13%)
Query: 111 GPIDPTKSSSYDFVRDLFTEVRSVFHD-EFLHTGGDEVDFYCWLNDPNIRQFLADRGWDG 169
G ++PTK Y ++ D+++++ VF + H GGDEV CW + +I+ F+ WD
Sbjct: 310 GQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDL 369
Query: 170 QQ-----LQSYYTRRA-----LAIAKQLGFTSIVWQEVYENWRSESRRMDPDT-VVQVWY 218
+ L +Y+ ++A A K+L I+W N++ ++ D ++QVW
Sbjct: 370 DKESFLKLWNYFQQKAQDKAYKAFGKKLPL--ILWTSTLTNYKHIDDYLNKDDYIIQVWT 427
Query: 219 GNRNDLLNRITRDGYTAITSAGWYLDVLDIRDGYG--------WQQE---WQRYYRIDPQ 267
+ + + GY I S D L GYG W WQ+ Y P
Sbjct: 428 TGVDPQIKGLLEKGYRLIMSN---YDALYFDCGYGAWVGAGNNWCSPYIGWQKVYDNSPA 484
Query: 268 EFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWS 313
E VLGGEA +W E+ D S ++ R+WPR AA+AERLW+
Sbjct: 485 VI--ALEHRDQVLGGEAALWSEQSDTSTLDGRLWPRAAALAERLWA 528
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 29 WQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWS 84
WQ+ Y P E VLGGEA +W E+ D S ++ R+WPR AA+AERLW+
Sbjct: 475 WQKVYDNSPAVI--ALEHRDQVLGGEAALWSEQSDTSTLDGRLWPRAAALAERLWA 528
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 30/226 (13%)
Query: 111 GPIDPTKSSSYDFVRDLFTEVRSVFHD-EFLHTGGDEVDFYCWLNDPNIRQFLADRGWDG 169
G ++PTK Y ++ D+++++ VF + H GGDEV CW + +I+ F+ WD
Sbjct: 310 GQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDL 369
Query: 170 QQ-----LQSYYTRRA-----LAIAKQLGFTSIVWQEVYENWRSESRRMDPDT-VVQVWY 218
+ L +Y+ ++A A K+L I+W N++ ++ D ++QVW
Sbjct: 370 DKESFLKLWNYFQQKAQDKAYKAFGKKLPL--ILWTSTLTNYKHIDDYLNKDDYIIQVWT 427
Query: 219 GNRNDLLNRITRDGYTAITSAGWYLDVLDIRDGYG--------WQQE---WQRYYRIDPQ 267
+ + + GY I S D L GYG W WQ+ Y P
Sbjct: 428 TGVDPQIKGLLEKGYRLIMSN---YDALYFDCGYGAWVGAGNNWCSPYIGWQKVYDNSPA 484
Query: 268 EFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWS 313
E VLGGEA +W E+ D S ++ R+WPR AA+AERLW+
Sbjct: 485 VI--ALEHRDQVLGGEAALWSEQSDTSTLDGRLWPRAAALAERLWA 528
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 29 WQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWS 84
WQ+ Y P E VLGGEA +W E+ D S ++ R+WPR AA+AERLW+
Sbjct: 475 WQKVYDNSPAVI--ALEHRDQVLGGEAALWSEQSDTSTLDGRLWPRAAALAERLWA 528
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 30/226 (13%)
Query: 111 GPIDPTKSSSYDFVRDLFTEVRSVFHD-EFLHTGGDEVDFYCWLNDPNIRQFLADRGWDG 169
G ++PTK Y ++ D+++++ VF + H GGDEV CW + +I+ F+ WD
Sbjct: 313 GQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDL 372
Query: 170 QQ-----LQSYYTRRA-----LAIAKQLGFTSIVWQEVYENWRSESRRMDPDT-VVQVWY 218
+ L +Y+ ++A A K+L I+W N++ ++ D ++QVW
Sbjct: 373 DKESFLKLWNYFQQKAQDKAYKAFGKKLPL--ILWTSTLTNYKHIDDYLNKDDYIIQVWT 430
Query: 219 GNRNDLLNRITRDGYTAITSAGWYLDVLDIRDGYG--------WQQE---WQRYYRIDPQ 267
+ + + GY I S D L GYG W WQ+ Y P
Sbjct: 431 TGVDPQIKGLLEKGYRLIMSN---YDALYFDCGYGAWVGAGNNWCSPYIGWQKVYDNSPA 487
Query: 268 EFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWS 313
E VLGGEA +W E+ D S ++ R+WPR AA+AERLW+
Sbjct: 488 VI--ALEHRDQVLGGEAALWSEQSDTSTLDGRLWPRAAALAERLWA 531
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 29 WQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWS 84
WQ+ Y P E VLGGEA +W E+ D S ++ R+WPR AA+AERLW+
Sbjct: 478 WQKVYDNSPAVI--ALEHRDQVLGGEAALWSEQSDTSTLDGRLWPRAAALAERLWA 531
>pdb|3RCN|A Chain A, Crystal Structure Of Beta-N-Acetylhexosaminidase From
Arthrobacter Aurescens
Length = 543
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 86/215 (40%), Gaps = 31/215 (14%)
Query: 116 TKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGWDG-QQLQS 174
+S +F R++ EV +F ++ GGDEV W + A+ G D L S
Sbjct: 286 VSETSLEFYRNVLDEVVEIFPSPWISLGGDEVPLTQWQASAQAQAKAAELGLDDVSGLHS 345
Query: 175 YYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNRITRDGYT 234
++ + K G + VW E+ + + +V W G + R GY
Sbjct: 346 WFVGQLALHLKHHGRATSVWDEIGDGGLPDG------ALVASWRGYEGGI--DALRKGYD 397
Query: 235 AITSAGWYLDVLDIR--DG------YGWQQEWQRYYRIDP------QEFPGTPEQHSLVL 280
+ L LD R DG G+ Q Y +P +FPG +L
Sbjct: 398 VVXCPEHKL-YLDHRQADGDDEPVPVGFVTTLQAVYEFEPLPGVEGTDFPGR------LL 450
Query: 281 GGEACIWGERVDES-NVESRIWPRGAAIAERLWSN 314
G +A IW E +D V+ +PR +AI+E WSN
Sbjct: 451 GAQANIWSEHLDSPRRVQFAAFPRLSAISEVFWSN 485
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 21 IEYGWQQEWQRYYRIDP------QEFPGTPEQHSLVLGGEACIWGERVDES-NVESRIWP 73
+ G+ Q Y +P +FPG +LG +A IW E +D V+ +P
Sbjct: 420 VPVGFVTTLQAVYEFEPLPGVEGTDFPGR------LLGAQANIWSEHLDSPRRVQFAAFP 473
Query: 74 RGAAIAERLWS 84
R +AI+E WS
Sbjct: 474 RLSAISEVFWS 484
>pdb|1HP4|A Chain A, Crystal Structure Of Streptomyces Plicatus
Beta-N-Acetylhexosaminidase
pdb|1HP5|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase
Complexed With Intermediate Analouge Nag-Thiazoline
pdb|1JAK|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase In
Complex With (2r,
3r,4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride (Ifg)
pdb|1M01|A Chain A, Wildtype Streptomyces Plicatus Beta-Hexosaminidase In
Complex With Product (Glcnac)
Length = 512
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 85/211 (40%), Gaps = 40/211 (18%)
Query: 117 KSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGWDGQQLQSYY 176
K +YDFV D+ E+ ++ +LH GGDE + P F+A +
Sbjct: 291 KDVTYDFVDDVIGELAALTPGRYLHIGGDEAH-----STPKA-DFVA------------F 332
Query: 177 TRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRND-----LLNRITRD 231
+R I + G T + W ++ E +VQ W +R + R+
Sbjct: 333 MKRVQPIVAKYGKTVVGWHQLAGAEPVEG------ALVQYWGLDRTGDAEKAEVAEAARN 386
Query: 232 GYTAITSAG--WYLDVLDIRD---GYGWQQ--EWQRYYRIDPQEF-PGTPEQHSLVLGGE 283
G I S YLD+ +D G W E QR Y DP + PG P V G E
Sbjct: 387 GTGLILSPADRTYLDMKYTKDTPLGLSWAGYVEVQRSYDWDPAGYLPGAPAD--AVRGVE 444
Query: 284 ACIWGERV-DESNVESRIWPRGAAIAERLWS 313
A +W E + D ++ +PR +AE WS
Sbjct: 445 APLWTETLSDPDQLDYMAFPRLPGVAELGWS 475
>pdb|1M04|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313n)
In Complex With Product (Glcnac)
Length = 512
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 85/211 (40%), Gaps = 40/211 (18%)
Query: 117 KSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGWDGQQLQSYY 176
K +YDFV D+ E+ ++ +LH GG+E + P F+A +
Sbjct: 291 KDVTYDFVDDVIGELAALTPGRYLHIGGNEAH-----STPKA-DFVA------------F 332
Query: 177 TRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRND-----LLNRITRD 231
+R I + G T + W ++ E +VQ W +R + R+
Sbjct: 333 MKRVQPIVAKYGKTVVGWHQLAGAEPVEG------ALVQYWGLDRTGDAEKAEVAEAARN 386
Query: 232 GYTAITSAG--WYLDVLDIRD---GYGWQQ--EWQRYYRIDPQEF-PGTPEQHSLVLGGE 283
G I S YLD+ +D G W E QR Y DP + PG P V G E
Sbjct: 387 GTGLILSPADRTYLDMKYTKDTPLGLSWAGYVEVQRSYDWDPAGYLPGAPAD--AVRGVE 444
Query: 284 ACIWGERV-DESNVESRIWPRGAAIAERLWS 313
A +W E + D ++ +PR +AE WS
Sbjct: 445 APLWTETLSDPDQLDYMAFPRLPGVAELGWS 475
>pdb|1M03|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313a)
In Complex With Product (Glcnac)
Length = 512
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 84/211 (39%), Gaps = 40/211 (18%)
Query: 117 KSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGWDGQQLQSYY 176
K +YDFV D+ E+ ++ +LH GG E + P F+A +
Sbjct: 291 KDVTYDFVDDVIGELAALTPGRYLHIGGAEAH-----STPKA-DFVA------------F 332
Query: 177 TRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRND-----LLNRITRD 231
+R I + G T + W ++ E +VQ W +R + R+
Sbjct: 333 MKRVQPIVAKYGKTVVGWHQLAGAEPVEG------ALVQYWGLDRTGDAEKAEVAEAARN 386
Query: 232 GYTAITSAG--WYLDVLDIRD---GYGWQQ--EWQRYYRIDPQEF-PGTPEQHSLVLGGE 283
G I S YLD+ +D G W E QR Y DP + PG P V G E
Sbjct: 387 GTGLILSPADRTYLDMKYTKDTPLGLSWAGYVEVQRSYDWDPAGYLPGAPAD--AVRGVE 444
Query: 284 ACIWGERV-DESNVESRIWPRGAAIAERLWS 313
A +W E + D ++ +PR +AE WS
Sbjct: 445 APLWTETLSDPDQLDYMAFPRLPGVAELGWS 475
>pdb|3GH4|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12
pdb|3GH5|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Glcnac
pdb|3GH7|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Galnac
pdb|3SUR|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nag-Thiazoline.
pdb|3SUS|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With
Gal-Nag-Thiazoline
pdb|3SUT|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Pugnac
pdb|3SUU|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Gal-Pugnac
pdb|3SUV|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Dnj
pdb|3SUW|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Cas
Length = 525
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 82/210 (39%), Gaps = 33/210 (15%)
Query: 110 WGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGWDG 169
+ + P +Y FV D+ +E+ ++ ++H GGDE + A D
Sbjct: 309 YSTLMPRAEITYQFVEDVISELAAISPSPYIHLGGDESN--------------ATSAAD- 353
Query: 170 QQLQSYYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNRIT 229
Y+ R AIA G + W S D+V+Q W + +
Sbjct: 354 ---YDYFFGRVTAIANSYGKKVVGWDP-----SDTSSGATSDSVLQNWTCSASTGTAAKA 405
Query: 230 RDGYTAITSAGWYLDVLDIRD---GYGWQQ--EWQRYYRIDPQEFPGTPEQHSLVLGGEA 284
+ ++ A YLD+ D G W+ R Y DP + + + + G E+
Sbjct: 406 KGMKVIVSPANAYLDMKYYSDSPIGLQWRGFVNTNRAYNWDPTDC----IKGANIYGVES 461
Query: 285 CIWGER-VDESNVESRIWPRGAAIAERLWS 313
+W E V + +++ ++P+ + AE W+
Sbjct: 462 TLWTETFVTQDHLDYMLYPKLLSNAEVGWT 491
>pdb|1YPX|A Chain A, Crystal Structure Of The Putative Vitamin-B12 Independent
Methionine Synthase From Listeria Monocytogenes,
Northeast Structural Genomics Target Lmr13
Length = 375
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 183 IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNR-ITRDGYTAITSAGW 241
+ +Q GF QE Y+N +E+ + P V + R + + I GY + A
Sbjct: 202 VVRQRGFDPETLQETYKNLINEAIKHKPADXVITXHICRGNFRSTWIAEGGYGPV--AET 259
Query: 242 YLDVLDIRDGYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRI 300
L+I DG+ + + +R P ++ P+ +VLG GE DE+ +++RI
Sbjct: 260 LFGKLNI-DGFFLEYDNERSGDFAPLKYVTRPDL-KIVLGLITSKTGELEDEAAIKARI 316
>pdb|2J13|A Chain A, Structure Of A Family 4 Carbohydrate Esterase From
Bacillus Anthracis
Length = 247
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 22/120 (18%)
Query: 150 YCWLNDPNIRQFLAD-----RGWDGQQLQSY-------YTRRALAIAKQLGFTSIVWQEV 197
+ +ND +R+ L + GQ+ Y ++ R LA+ K++G+ ++ W
Sbjct: 120 FTAVNDEKLREELTSVTEEIKKVTGQKEVKYVRPPRGVFSERTLALTKEMGYYNVFWSLA 179
Query: 198 YENWRSESRR---MDPDTVVQVWYGNRNDLLNRITRDGYTAITS-------AGWYLDVLD 247
+ +W+ + +R + V+ + + LL+ I++D A+ G++ LD
Sbjct: 180 FLDWKVDEQRGWQYAHNNVMTMIHPGSILLLHAISKDNAEALAKIIDDLREKGYHFKSLD 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,404,395
Number of Sequences: 62578
Number of extensions: 517464
Number of successful extensions: 1277
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1225
Number of HSP's gapped (non-prelim): 39
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)