Query psy12961
Match_columns 315
No_of_seqs 166 out of 1296
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 15:33:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06562 GH20_HexA_HexB-like Be 100.0 7.8E-63 1.7E-67 476.0 23.5 265 1-314 57-324 (348)
2 KOG2499|consensus 100.0 6.8E-62 1.5E-66 470.8 19.4 258 1-314 237-499 (542)
3 cd06563 GH20_chitobiase-like T 100.0 3.9E-61 8.4E-66 465.6 24.4 256 9-314 80-344 (357)
4 cd06570 GH20_chitobiase-like_1 100.0 5.6E-61 1.2E-65 456.3 22.4 236 9-314 62-298 (311)
5 cd06569 GH20_Sm-chitobiase-lik 100.0 1.7E-58 3.7E-63 457.9 24.1 270 8-314 90-417 (445)
6 cd06568 GH20_SpHex_like A subg 100.0 7.4E-56 1.6E-60 424.4 22.7 240 8-314 68-316 (329)
7 PF00728 Glyco_hydro_20: Glyco 100.0 9.7E-56 2.1E-60 424.2 13.3 271 2-314 58-350 (351)
8 cd02742 GH20_hexosaminidase Be 100.0 9.2E-54 2E-58 405.7 21.7 238 4-313 62-303 (303)
9 cd06564 GH20_DspB_LnbB-like Gl 100.0 3.1E-52 6.7E-57 398.9 20.4 239 8-314 75-326 (326)
10 COG3525 Chb N-acetyl-beta-hexo 100.0 5.9E-43 1.3E-47 349.4 15.2 264 7-315 338-616 (732)
11 cd06565 GH20_GcnA-like Glycosy 100.0 7.5E-34 1.6E-38 269.4 16.8 239 9-313 54-301 (301)
12 KOG2499|consensus 98.7 4.7E-09 1E-13 103.6 2.4 56 28-84 442-498 (542)
13 cd06570 GH20_chitobiase-like_1 98.4 7.4E-08 1.6E-12 92.2 0.5 36 50-85 263-298 (311)
14 cd06569 GH20_Sm-chitobiase-lik 98.3 2E-07 4.3E-12 93.4 1.5 40 46-85 377-417 (445)
15 cd06568 GH20_SpHex_like A subg 98.3 2.2E-07 4.7E-12 89.6 1.1 57 27-85 258-316 (329)
16 cd06563 GH20_chitobiase-like T 98.2 2.5E-07 5.4E-12 90.1 0.3 59 27-85 285-344 (357)
17 cd06562 GH20_HexA_HexB-like Be 98.2 3.7E-07 7.9E-12 88.7 1.3 39 46-84 285-323 (348)
18 cd02742 GH20_hexosaminidase Be 97.9 2.5E-06 5.3E-11 81.3 0.4 41 44-84 262-303 (303)
19 cd06564 GH20_DspB_LnbB-like Gl 97.8 5.3E-06 1.1E-10 79.8 0.6 41 44-84 281-325 (326)
20 PF00728 Glyco_hydro_20: Glyco 97.5 2E-05 4.4E-10 75.7 0.4 37 48-84 312-349 (351)
21 COG3525 Chb N-acetyl-beta-hexo 95.3 0.0037 8.1E-08 64.7 -0.6 38 48-85 577-615 (732)
22 PF02638 DUF187: Glycosyl hydr 92.3 1.5 3.3E-05 42.1 10.8 75 112-188 130-220 (311)
23 PF13200 DUF4015: Putative gly 82.3 8.2 0.00018 37.3 8.8 125 14-191 60-190 (316)
24 COG1649 Uncharacterized protei 78.7 15 0.00032 36.9 9.5 30 111-140 174-203 (418)
25 PF14871 GHL6: Hypothetical gl 74.1 8.4 0.00018 32.4 5.5 85 10-137 39-125 (132)
26 PF02449 Glyco_hydro_42: Beta- 70.9 16 0.00035 35.6 7.6 106 7-160 39-150 (374)
27 PLN02960 alpha-amylase 60.6 1E+02 0.0022 34.0 11.6 36 5-48 456-491 (897)
28 PRK14706 glycogen branching en 60.3 90 0.002 33.1 11.1 36 5-48 207-242 (639)
29 PLN02447 1,4-alpha-glucan-bran 59.5 1.1E+02 0.0024 33.2 11.6 80 112-202 359-451 (758)
30 PRK14582 pgaB outer membrane N 55.7 68 0.0015 34.3 9.2 77 111-187 433-528 (671)
31 PRK12568 glycogen branching en 52.8 41 0.00089 36.3 7.1 37 4-48 308-344 (730)
32 PLN03244 alpha-amylase; Provis 50.5 2.5E+02 0.0054 30.9 12.3 37 4-48 430-466 (872)
33 PRK14705 glycogen branching en 49.8 1.6E+02 0.0034 33.9 11.2 36 5-48 805-840 (1224)
34 smart00642 Aamy Alpha-amylase 44.2 13 0.00027 32.3 1.4 28 13-48 68-95 (166)
35 PF02065 Melibiase: Melibiase; 42.9 50 0.0011 32.9 5.5 89 16-147 105-194 (394)
36 COG0296 GlgB 1,4-alpha-glucan 41.9 17 0.00036 38.5 2.1 39 3-49 202-240 (628)
37 COG0084 TatD Mg-dependent DNas 41.3 1.9E+02 0.0042 27.0 9.0 66 171-239 108-178 (256)
38 COG1168 MalY Bifunctional PLP- 38.7 25 0.00054 34.9 2.6 39 6-49 169-210 (388)
39 COG0436 Aspartate/tyrosine/aro 38.6 22 0.00047 35.2 2.3 27 7-37 175-201 (393)
40 PRK12313 glycogen branching en 37.7 85 0.0018 33.1 6.6 31 10-48 215-245 (633)
41 cd00672 CysRS_core catalytic c 35.7 2.6E+02 0.0056 25.2 8.7 73 110-190 31-104 (213)
42 PF10566 Glyco_hydro_97: Glyco 32.4 32 0.0007 32.6 2.2 24 10-37 68-91 (273)
43 PF00128 Alpha-amylase: Alpha 31.8 17 0.00037 33.0 0.3 28 13-48 50-77 (316)
44 PF06414 Zeta_toxin: Zeta toxi 29.9 3.7E+02 0.008 23.4 8.5 86 130-237 34-124 (199)
45 PF00155 Aminotran_1_2: Aminot 27.2 45 0.00098 31.5 2.3 30 4-37 157-186 (363)
46 TIGR02100 glgX_debranch glycog 23.7 2.4E+02 0.0051 30.3 7.1 28 13-48 243-270 (688)
47 PF04904 NCD1: NAB conserved r 22.9 47 0.001 25.6 1.2 48 137-187 26-73 (82)
48 PF09508 Lact_bio_phlase: Lact 22.7 3.6E+02 0.0079 28.9 7.9 25 112-136 176-200 (716)
49 PF07931 CPT: Chloramphenicol 22.6 53 0.0012 28.8 1.7 24 126-149 16-39 (174)
50 PF01565 FAD_binding_4: FAD bi 22.2 50 0.0011 26.9 1.4 28 13-49 9-36 (139)
51 PF05705 DUF829: Eukaryotic pr 21.8 1.1E+02 0.0023 27.5 3.6 38 5-48 185-222 (240)
52 PLN02368 alanine transaminase 20.5 66 0.0014 31.9 2.1 28 6-37 221-248 (407)
53 KOG1232|consensus 20.1 80 0.0017 31.6 2.5 40 13-62 98-137 (511)
No 1
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=100.00 E-value=7.8e-63 Score=475.99 Aligned_cols=265 Identities=44% Similarity=0.818 Sum_probs=233.0
Q ss_pred CCCCCCcCCcccChhhHHHHHHhcccCccccceEEeccCCCCCccccccccccccccccccccccccccccchhhHHHHH
Q psy12961 1 NKGSFHRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAE 80 (315)
Q Consensus 1 ~~ga~~~~~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~e 80 (315)
++|+|++ +++||++|+|+||+||++ |||+||| || |+| ||+
T Consensus 57 ~~ga~~~-~~~YT~~di~eiv~yA~~----rgI~vIP-EI-D~P-GH~-------------------------------- 96 (348)
T cd06562 57 KKGAYSP-SEVYTPEDVKEIVEYARL----RGIRVIP-EI-DTP-GHT-------------------------------- 96 (348)
T ss_pred hccCcCC-CceECHHHHHHHHHHHHH----cCCEEEE-ec-cCc-hhh--------------------------------
Confidence 3689986 799999999999999999 9999999 99 999 999
Q ss_pred HhhhhcCCCCCccccccccCCCCCCCCCcCcCcCCCChhHHHHHHHHHHHHHhhcCCCeEEecCCCcccccccCCHHHHH
Q psy12961 81 RLWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQ 160 (315)
Q Consensus 81 ~~~s~~~~~p~l~~~~~~~~p~~~~~~~~~~~l~~~~~~t~~fl~~ll~e~~~lF~~~~iHiGgDEv~~~~w~~~~~~~~ 160 (315)
.++.+++|+|.+.|.... .....+...++|||++|+|++|+++|++|++++||++||||||||++..||.++|.|++
T Consensus 97 --~a~~~~~p~l~~~~~~~~-~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDE~~~~~w~~~p~~~~ 173 (348)
T cd06562 97 --GSWGQGYPELLTGCYAVW-RKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDKYFHLGGDEVNFNCWNSNPEIQK 173 (348)
T ss_pred --HHHHHhChhhhCCCCccc-cccccCCCCccccCCChhHHHHHHHHHHHHHHhcCCcceEeecCCCCCCcccCCHHHHH
Confidence 345578999987664211 01122345678999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCeEEEecCCCchhHHHHHHHcCCeEEEcC
Q psy12961 161 FLADRGW-DGQQLQSYYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNRITRDGYTAITSA 239 (315)
Q Consensus 161 ~~~~~g~-~~~~l~~~f~~~~~~~~~~~g~~~~~W~d~~~~~~~~~~~l~~~~iv~~W~~~~~~~~~~~~~~G~~~I~s~ 239 (315)
+|+++|+ +..+|+.+|++++.++++++||++++|+|++...+ ..++++++|++|++.. .+.+++++||++|+|+
T Consensus 174 ~m~~~g~~~~~~l~~~f~~~~~~~l~~~Gk~~i~W~d~~~~~~---~~~~~~~iv~~W~~~~--~~~~~~~~G~~vI~s~ 248 (348)
T cd06562 174 FMKKNNGTDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDNGV---YLLPKDTIVQVWGGSD--ELKNVLAAGYKVILSS 248 (348)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEeeecccCCC---ccCCCCeEEEECCCcH--HHHHHHHCCCCEEEeC
Confidence 9999998 99999999999999999999999999999987632 3689999999999874 6788999999999999
Q ss_pred --CcccccccccCCCCCCcchhhhhccCCCCCCCCccccCceeeeeeEeccCcCCccchHHhhhhhHHHHHHhcccC
Q psy12961 240 --GWYLDVLDIRDGYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSN 314 (315)
Q Consensus 240 --~~YLd~~~~~~~~~~~~~w~~~Y~~~P~~~~~~~~~~~~ilG~e~~lW~E~~~~~~l~~~l~PR~~A~AEr~Ws~ 314 (315)
.+|||+++.... ..+.+|+++|+++|..+..+++..++|+|+|+|||+|++++.++++++|||++|+|||+|++
T Consensus 249 ~~~~Yld~~~~~~~-~~~~~~~~~y~~~p~~~~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~PR~~a~AE~~W~~ 324 (348)
T cd06562 249 YDFWYLDCGFGGWV-GPGNDWCDPYKNWPRIYSGTPEQKKLVLGGEACMWGEQVDDTNLDQRLWPRASALAERLWSG 324 (348)
T ss_pred CCcEEEeecCCCCC-CCCCcHhhhhcCCCCCCCCChhhcccEEEEEEEeeeeeeCccceeehhhhhHHHHHHHhhCC
Confidence 699999863322 34579999999999876666667889999999999999998889999999999999999996
No 2
>KOG2499|consensus
Probab=100.00 E-value=6.8e-62 Score=470.77 Aligned_cols=258 Identities=43% Similarity=0.861 Sum_probs=234.5
Q ss_pred CCCCCCcCCcccChhhHHHHHHhcccCccccceEEeccCCCCCccccccccccccccccccccccccccccchhhHHHHH
Q psy12961 1 NKGSFHRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAE 80 (315)
Q Consensus 1 ~~ga~~~~~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~e 80 (315)
.|||||+ +++||++|+.++|+||+. |||+|+| || |+| ||+
T Consensus 237 ~kGaYs~-~~vYT~eDv~evV~yarl----RGIRVlp-Ef-D~P-gHt-------------------------------- 276 (542)
T KOG2499|consen 237 RKGAYSP-RHVYTREDVSEVVEYARL----RGIRVLP-EF-DTP-GHT-------------------------------- 276 (542)
T ss_pred hcCCCCc-ceeecHHHHHHHHHHHHh----ccceeee-cc-cCC-ccc--------------------------------
Confidence 4899997 799999999999999999 9999999 99 999 999
Q ss_pred HhhhhcCCCCCccccccccCCCCCCCCCcCcCcCCCChhHHHHHHHHHHHHHhhcCCCeEEecCCCcccccccCCHHHHH
Q psy12961 81 RLWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQ 160 (315)
Q Consensus 81 ~~~s~~~~~p~l~~~~~~~~p~~~~~~~~~~~l~~~~~~t~~fl~~ll~e~~~lF~~~~iHiGgDEv~~~~w~~~~~~~~ 160 (315)
-|||.++|+|...|. ++.++++.+++|||+++.+|+|++.++.|+.+.||..+||+|||||...||+++|++|+
T Consensus 277 --~sWg~g~~~fl~p~~----~~~~~~~~~gplnP~~n~tydvls~i~~dv~evFp~~~~HlGGDEV~~~CW~s~~~Iq~ 350 (542)
T KOG2499|consen 277 --GSWGPGYPDFLTPCW----SSFEVQPPFGPLNPTNNHTYDVLSEIFEDVSEVFPDEFFHLGGDEVSTPCWKSNPEIQD 350 (542)
T ss_pred --ccccCCCCcccCCcc----cccccCCCCcCCCCCchhHHHHHHHHHHHHHHhCcHHHeecCCceeecccccCChHHHH
Confidence 479999999887776 44566778999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC--CHHHHHHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCeEEEecCCCch-hHHHHHHHcCCeEEE
Q psy12961 161 FLADRGW--DGQQLQSYYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRN-DLLNRITRDGYTAIT 237 (315)
Q Consensus 161 ~~~~~g~--~~~~l~~~f~~~~~~~~~~~g~~~~~W~d~~~~~~~~~~~l~~~~iv~~W~~~~~-~~~~~~~~~G~~~I~ 237 (315)
||++.|+ +..++..+|++++.+++...++++|+|+|.+.+. ..+++++|+|+|..+.. ....+...+||++|+
T Consensus 351 fM~~kGfg~~~~~~~~~~~~~~~~i~~s~~~~~I~Wqevf~n~----~~i~p~tiiq~W~~~~~~~~~~k~v~~~~~~iv 426 (542)
T KOG2499|consen 351 FMRKKGFGLDTKSLERLYIQFLLDILNSWNKTVIVWQEVFDNK----RKIDPRTIIQIWKIGTWYPKELKIVTKGYRFIV 426 (542)
T ss_pred HHHhCCCCchHHHHHHHHHHHHHHHHHhcCceEEEeehhcccc----ccCCCCceeeeeccCCccHHHHHHHhccCceEE
Confidence 9999999 6677999999999999999999999999999884 46799999999998741 234556667776666
Q ss_pred cC--CcccccccccCCCCCCcchhhhhccCCCCCCCCccccCceeeeeeEeccCcCCccchHHhhhhhHHHHHHhcccC
Q psy12961 238 SA--GWYLDVLDIRDGYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSN 314 (315)
Q Consensus 238 s~--~~YLd~~~~~~~~~~~~~w~~~Y~~~P~~~~~~~~~~~~ilG~e~~lW~E~~~~~~l~~~l~PR~~A~AEr~Ws~ 314 (315)
|+ +||||+.. |+.+|+++|+.+|.++.++++++++|+|||+|||+|++|+++|++|+|||+.|+|||+||.
T Consensus 427 s~s~~wYLd~~~------~g~dw~~~Y~~~p~~~~g~~~~k~lVlGGE~cmWgE~vD~t~L~~RlWPRAsA~AERLWS~ 499 (542)
T KOG2499|consen 427 SNSAAWYLDHIG------YGSDWRKVYNTEPLSGMGTPEQKKLVLGGEVCMWGEYVDNTNLESRLWPRASAAAERLWSN 499 (542)
T ss_pred EeccceEeeccc------cCCChhheeeccccccCCCHHHhhheecceeeeehhhccccccccccccchhHHHHHhhcc
Confidence 54 79999764 7889999999999999999999999999999999999999999999999999999999993
No 3
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=3.9e-61 Score=465.61 Aligned_cols=256 Identities=30% Similarity=0.496 Sum_probs=222.7
Q ss_pred CcccChhhHHHHHHhcccCccccceEEeccCCCCCccccccccccccccccccccccccccccchhhHHHHHHhhhhcCC
Q psy12961 9 KAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSWGYG 88 (315)
Q Consensus 9 ~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~e~~~s~~~~ 88 (315)
+++||++|+++||+||++ |||+||| || |+| ||+. ++.++
T Consensus 80 ~~~YT~~di~eiv~yA~~----rgI~VIP-EI-D~P-GH~~----------------------------------a~l~~ 118 (357)
T cd06563 80 GGFYTQEEIREIVAYAAE----RGITVIP-EI-DMP-GHAL----------------------------------AALAA 118 (357)
T ss_pred CceECHHHHHHHHHHHHH----cCCEEEE-ec-CCc-hhHH----------------------------------HHHHh
Confidence 589999999999999999 9999999 99 999 9993 44567
Q ss_pred CCCccccccccCCCCCCCCCcCcCcCCCChhHHHHHHHHHHHHHhhcCCCeEEecCCCcccccccCCHHHHHHHHhcCC-
Q psy12961 89 NPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGW- 167 (315)
Q Consensus 89 ~p~l~~~~~~~~p~~~~~~~~~~~l~~~~~~t~~fl~~ll~e~~~lF~~~~iHiGgDEv~~~~w~~~~~~~~~~~~~g~- 167 (315)
+|+|.+.+....+.. ......++|||++|+|++|+++|++|++++||+++|||||||++..||.++|.|+++|+++|+
T Consensus 119 ~pel~~~~~~~~~~~-~~~~~~~~L~~~~~~t~~f~~~ll~E~~~lF~~~~iHiGgDE~~~~~w~~~~~~~~~~~~~g~~ 197 (357)
T cd06563 119 YPELGCTGGPGSVVS-VQGVVSNVLCPGKPETYTFLEDVLDEVAELFPSPYIHIGGDEVPKGQWEKSPACQARMKEEGLK 197 (357)
T ss_pred CccccCCCCCCcccc-ccCcCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEEeccccCCcccccCHHHHHHHHHcCCC
Confidence 999987654211111 111245789999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCeEEEecCCCchhHHHHHHHcCCeEEEcCC--ccccc
Q psy12961 168 DGQQLQSYYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNRITRDGYTAITSAG--WYLDV 245 (315)
Q Consensus 168 ~~~~l~~~f~~~~~~~~~~~g~~~~~W~d~~~~~~~~~~~l~~~~iv~~W~~~~~~~~~~~~~~G~~~I~s~~--~YLd~ 245 (315)
+..+|+.+|++++.++++++|+++++|+|++.. .+++++||++|++. ..+.+++++||++|+|++ +|||+
T Consensus 198 ~~~~l~~~f~~~~~~~v~~~G~~~i~W~d~~~~------~l~~~~iv~~W~~~--~~~~~~~~~G~~vI~s~~~~~Yld~ 269 (357)
T cd06563 198 DEHELQSYFIKRVEKILASKGKKMIGWDEILEG------GLPPNATVMSWRGE--DGGIKAAKQGYDVIMSPGQYLYLDY 269 (357)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEEeeccccc------CCCCCcEEEECCCc--hHHHHHHHCCCCEEEeCCCceEEec
Confidence 889999999999999999999999999999864 38999999999987 467889999999999984 89999
Q ss_pred ccccC-----CCCCCcchhhhhccCCCCCCCCccccCceeeeeeEeccCcCCc-cchHHhhhhhHHHHHHhcccC
Q psy12961 246 LDIRD-----GYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDE-SNVESRIWPRGAAIAERLWSN 314 (315)
Q Consensus 246 ~~~~~-----~~~~~~~w~~~Y~~~P~~~~~~~~~~~~ilG~e~~lW~E~~~~-~~l~~~l~PR~~A~AEr~Ws~ 314 (315)
++... +.....+|+++|+|+|.....++++.++|+|||+|||||++++ +++++++|||++|+|||+|++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~y~~~P~~~~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~~PR~~a~AE~~W~~ 344 (357)
T cd06563 270 AQSKGPDEPASWAGFNTLEKVYSFEPVPGGLTPEQAKRILGVQANLWTEYIPTPERVEYMAFPRLLALAEVAWTP 344 (357)
T ss_pred CCCCCCCCCccccCCCCHHHHhcCCCCCCCCChhHhcCEEEEEEEecccccCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 87431 1223468999999999876555567899999999999999965 579999999999999999996
No 4
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=5.6e-61 Score=456.25 Aligned_cols=236 Identities=37% Similarity=0.700 Sum_probs=209.4
Q ss_pred CcccChhhHHHHHHhcccCccccceEEeccCCCCCccccccccccccccccccccccccccccchhhHHHHHHhhhhcCC
Q psy12961 9 KAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSWGYG 88 (315)
Q Consensus 9 ~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~e~~~s~~~~ 88 (315)
+++||++|+++||+||++ |||+||| || |+| ||+. +|.++
T Consensus 62 ~~~yT~~di~elv~yA~~----rgI~vIP-EI-d~P-GH~~----------------------------------a~~~~ 100 (311)
T cd06570 62 GLYYTQEQIREVVAYARD----RGIRVVP-EI-DVP-GHAS----------------------------------AIAVA 100 (311)
T ss_pred CCccCHHHHHHHHHHHHH----cCCEEEE-ee-cCc-cchH----------------------------------HHHHh
Confidence 579999999999999999 9999999 99 999 9993 44568
Q ss_pred CCCccccccccCCCCCCCCCcCcCcCCCChhHHHHHHHHHHHHHhhcCCCeEEecCCCcccccccCCHHHHHHHHhcCC-
Q psy12961 89 NPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGW- 167 (315)
Q Consensus 89 ~p~l~~~~~~~~p~~~~~~~~~~~l~~~~~~t~~fl~~ll~e~~~lF~~~~iHiGgDEv~~~~w~~~~~~~~~~~~~g~- 167 (315)
||+|.+.|...... .......++|||++|+|++|+++|++|++++||++||||||||++..||.++|.|+++|+++|+
T Consensus 101 ypel~~~~~~~~~~-~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~lF~~~~iHiGgDE~~~~~W~~~p~~~~~~~~~g~~ 179 (311)
T cd06570 101 YPELASGPGPYVIE-RGWGVFEPLLDPTNEETYTFLDNLFGEMAELFPDEYFHIGGDEVDPKQWNENPRIQAFMKEHGLK 179 (311)
T ss_pred CHHhccCCCccccc-cccccCCCccCCCChhHHHHHHHHHHHHHHhCCCCceEeeccCCCCCcccCCHHHHHHHHHcCCC
Confidence 99998765311100 0011234579999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCeEEEecCCCchhHHHHHHHcCCeEEEcCCccccccc
Q psy12961 168 DGQQLQSYYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNRITRDGYTAITSAGWYLDVLD 247 (315)
Q Consensus 168 ~~~~l~~~f~~~~~~~~~~~g~~~~~W~d~~~~~~~~~~~l~~~~iv~~W~~~~~~~~~~~~~~G~~~I~s~~~YLd~~~ 247 (315)
+..+|+.+|++++.++++++||++++|+|++.. .+++++|||.|.+. +.+.+++++||++|+|+++|||+.+
T Consensus 180 ~~~~l~~~f~~~~~~~v~~~Gk~~~~W~d~~~~------~l~~~~iv~~W~~~--~~~~~~~~~G~~vI~s~~~YlD~~~ 251 (311)
T cd06570 180 DAAALQAYFNQRVEKILSKHGKKMIGWDEVLHP------DLPKNVVIQSWRGH--DSLGEAAKAGYQGILSTGYYIDQPQ 251 (311)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCeEEEecccccc------CCCCCeEEEEeCCc--hHHHHHHHCCCCEEEechhheeCCC
Confidence 889999999999999999999999999999743 68999999999975 4578899999999999999999875
Q ss_pred ccCCCCCCcchhhhhccCCCCCCCCccccCceeeeeeEeccCcCCccchHHhhhhhHHHHHHhcccC
Q psy12961 248 IRDGYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSN 314 (315)
Q Consensus 248 ~~~~~~~~~~w~~~Y~~~P~~~~~~~~~~~~ilG~e~~lW~E~~~~~~l~~~l~PR~~A~AEr~Ws~ 314 (315)
+++++|+++|. |+|||+|||||++++.++++++|||++|+|||+||+
T Consensus 252 ---------~~~~~y~~~p~-----------ilG~~~~lW~E~v~~~~~~~~~~PR~~A~AE~~Ws~ 298 (311)
T cd06570 252 ---------PAAYHYRVDPM-----------ILGGEATMWAELVSEETIDSRLWPRTAAIAERLWSA 298 (311)
T ss_pred ---------chhheeCCCCc-----------EEEEEEEEeecCcCHHHHHHHHhHHHHHHHHHhhCC
Confidence 46788998885 999999999999988889999999999999999996
No 5
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.7e-58 Score=457.89 Aligned_cols=270 Identities=25% Similarity=0.392 Sum_probs=219.2
Q ss_pred CCcccChhhHHHHHHhcccCccccceEEeccCCCCCccccccccccccccccccccccccccccchhhHHHHHHhhhhcC
Q psy12961 8 TKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSWGY 87 (315)
Q Consensus 8 ~~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~e~~~s~~~ 87 (315)
.+++||++||++||+||++ |||+||| || |+| ||+. +++ .+...
T Consensus 90 ~~g~YT~~di~eiv~yA~~----rgI~VIP-EI-D~P-GH~~--------------------------a~l----~a~~~ 132 (445)
T cd06569 90 GSGYYSRADYIEILKYAKA----RHIEVIP-EI-DMP-GHAR--------------------------AAI----KAMEA 132 (445)
T ss_pred cCCccCHHHHHHHHHHHHH----cCCEEEE-cc-CCc-hhHH--------------------------HHH----Hhhhc
Confidence 3689999999999999999 9999999 99 999 9993 222 11123
Q ss_pred CCCCcccccccc--------CC-C---CCCCCC-cCcCcCCCChhHHHHHHHHHHHHHhhc-----CCCeEEecCCCccc
Q psy12961 88 GNPNLLCKINIT--------IP-D---LNTTQE-YWGPIDPTKSSSYDFVRDLFTEVRSVF-----HDEFLHTGGDEVDF 149 (315)
Q Consensus 88 ~~p~l~~~~~~~--------~p-~---~~~~~~-~~~~l~~~~~~t~~fl~~ll~e~~~lF-----~~~~iHiGgDEv~~ 149 (315)
+||+|.+.+... .| + ..+.++ ..++|||++|+||+|+++||+|++++| |++||||||||++.
T Consensus 133 ~yp~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~~lF~~~g~P~~yiHiGGDEv~~ 212 (445)
T cd06569 133 RYRKLMAAGKPAEAEEYRLSDPADTSQYLSVQFYTDNVINPCMPSTYRFVDKVIDEIARMHQEAGQPLTTIHFGGDEVPE 212 (445)
T ss_pred cchhhhccCCccccccccccCcccccccccccccccccccCCchhHHHHHHHHHHHHHHHHhccCCCcceEEEeccccCC
Confidence 477776532100 00 0 011122 347899999999999999999999999 67999999999999
Q ss_pred ccccCCHHHH--HHHHhcCC-CHHHHHHHHHHHHHHHHHHcCCeEEEecccccccccc--CCCCCCCeEEEecCCCc---
Q psy12961 150 YCWLNDPNIR--QFLADRGW-DGQQLQSYYTRRALAIAKQLGFTSIVWQEVYENWRSE--SRRMDPDTVVQVWYGNR--- 221 (315)
Q Consensus 150 ~~w~~~~~~~--~~~~~~g~-~~~~l~~~f~~~~~~~~~~~g~~~~~W~d~~~~~~~~--~~~l~~~~iv~~W~~~~--- 221 (315)
.||.+||.|+ ++|++.|+ +..+|+.+|++++.++++++|+++++|+|++...... ...++++++|++|+...
T Consensus 213 ~~W~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~v~~~l~~~Gk~~i~W~e~~~~~~~~~~~~~~~~~~~v~~W~~~~~~~ 292 (445)
T cd06569 213 GAWGGSPACKAQLFAKEGSVKDVEDLKDYFFERVSKILKAHGITLAGWEDGLLGKDTTNVDGFATPYVWNNVWGWGYWGG 292 (445)
T ss_pred CcccCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEecccccCCCcccccccCCCCeEEEEccCCcccc
Confidence 9999999999 89999998 8899999999999999999999999999998875421 13467899999998642
Q ss_pred hhHHHHHHHcCCeEEEcCC--cccccccccC----CCCC---CcchhhhhccCCCCC----------------------C
Q psy12961 222 NDLLNRITRDGYTAITSAG--WYLDVLDIRD----GYGW---QQEWQRYYRIDPQEF----------------------P 270 (315)
Q Consensus 222 ~~~~~~~~~~G~~~I~s~~--~YLd~~~~~~----~~~~---~~~w~~~Y~~~P~~~----------------------~ 270 (315)
.+.+.+++++||++|+|++ +|||+++..+ |..| +.+|+++|+|+|... .
T Consensus 293 ~~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~g~~w~~~~~~~~~~y~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (445)
T cd06569 293 EDRAYKLANKGYDVVLSNATNLYFDFPYEKHPEERGYYWAGRFVDTKKVFSFMPDNLYANAEVTRDGDPIDDTALNGKVR 372 (445)
T ss_pred cHHHHHHHHCCCCEEEeCCCcEEEecCCCCCCCcCCcccccCCCCHHHhhccCCchhhccchhhcccCcccccccccccc
Confidence 3567889999999999985 9999986432 2333 368999999999631 2
Q ss_pred CCccccCceeeeeeEeccCcCCc-cchHHhhhhhHHHHHHhcccC
Q psy12961 271 GTPEQHSLVLGGEACIWGERVDE-SNVESRIWPRGAAIAERLWSN 314 (315)
Q Consensus 271 ~~~~~~~~ilG~e~~lW~E~~~~-~~l~~~l~PR~~A~AEr~Ws~ 314 (315)
+++++.++|+|+|+|||||++++ +++++++|||++|+|||+||+
T Consensus 373 ~~~~~~~~ilG~e~~lWsE~v~~~~~l~~~~~PR~~A~AE~~Ws~ 417 (445)
T cd06569 373 LTLEGPKNILGLQGQLWSETIRTDEQLEYMVFPRLLALAERAWHK 417 (445)
T ss_pred CChhHhcceeEEEEeeeccccCCHHHhHHHhhhHHHHHHHHHhcC
Confidence 34566789999999999999975 579999999999999999996
No 6
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=100.00 E-value=7.4e-56 Score=424.36 Aligned_cols=240 Identities=29% Similarity=0.461 Sum_probs=199.9
Q ss_pred CCcccChhhHHHHHHhcccCccccceEEeccCCCCCccccccccccccccccccccccccccccchhhHHHHHHhhhhcC
Q psy12961 8 TKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSWGY 87 (315)
Q Consensus 8 ~~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~e~~~s~~~ 87 (315)
.+++||++|+++||+||++ |||+||| || |+| ||+. ++.+
T Consensus 68 ~~~~YT~~di~elv~yA~~----rgI~vIP-Ei-D~P-GH~~----------------------------------a~~~ 106 (329)
T cd06568 68 PGGYYTQEDYKDIVAYAAE----RHITVVP-EI-DMP-GHTN----------------------------------AALA 106 (329)
T ss_pred CCCcCCHHHHHHHHHHHHH----cCCEEEE-ec-CCc-HHHH----------------------------------HHHH
Confidence 4689999999999999999 9999999 99 999 9993 3446
Q ss_pred CCCCccccccccCCCCCCCCCcCcCcCCCChhHHHHHHHHHHHHHhhcCCCeEEecCCCcccccccCCHHHHHHHHhcCC
Q psy12961 88 GNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGW 167 (315)
Q Consensus 88 ~~p~l~~~~~~~~p~~~~~~~~~~~l~~~~~~t~~fl~~ll~e~~~lF~~~~iHiGgDEv~~~~w~~~~~~~~~~~~~g~ 167 (315)
+||+|.+.+.. .+.....+...++|||++|+|++|+++|++|++++||+++|||||||++..
T Consensus 107 ~~p~l~~~~~~-~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~~~iHiGgDE~~~~----------------- 168 (329)
T cd06568 107 AYPELNCDGKA-KPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTPGPYIHIGGDEAHST----------------- 168 (329)
T ss_pred hChhhccCCCC-CccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCCeEEEecccCCCC-----------------
Confidence 79999864321 111112223457899999999999999999999999999999999999753
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCeEEEecCCCc-hhHHHHHHHcCCeEEEcCC--cccc
Q psy12961 168 DGQQLQSYYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNR-NDLLNRITRDGYTAITSAG--WYLD 244 (315)
Q Consensus 168 ~~~~l~~~f~~~~~~~~~~~g~~~~~W~d~~~~~~~~~~~l~~~~iv~~W~~~~-~~~~~~~~~~G~~~I~s~~--~YLd 244 (315)
..+++.+|++++.++++++||++++|+|++.. .+++++||++|++.. ...+.+++++||++|+|++ +|||
T Consensus 169 -~~~~~~~f~~~~~~~v~~~Gk~~~~W~d~~~~------~l~~~~iv~~W~~~~~~~~~~~~~~~G~~vI~s~~~~~YlD 241 (329)
T cd06568 169 -PHDDYAYFVNRVRAIVAKYGKTPVGWQEIARA------DLPAGTVAQYWSDRAPDADAAAALDKGAKVILSPADKAYLD 241 (329)
T ss_pred -chHHHHHHHHHHHHHHHHCCCeEEEECccccc------CCCCCeEEEECCCCCCchHHHHHHHCCCCEEEeCCCcEEEe
Confidence 23567899999999999999999999999643 489999999999863 2467899999999999985 9999
Q ss_pred cccccC---CCCC--CcchhhhhccCCCCCCCCccccCceeeeeeEeccCcCCcc-chHHhhhhhHHHHHHhcccC
Q psy12961 245 VLDIRD---GYGW--QQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDES-NVESRIWPRGAAIAERLWSN 314 (315)
Q Consensus 245 ~~~~~~---~~~~--~~~w~~~Y~~~P~~~~~~~~~~~~ilG~e~~lW~E~~~~~-~l~~~l~PR~~A~AEr~Ws~ 314 (315)
+.+... +..| ..+|+++|+|+|.....+ ++.++|||||+|||||++++. ++++++|||++|+|||+|++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~y~~~P~~~~~~-~~~~~ilG~~~~lW~E~~~~~~~~~~~~~PR~~a~AE~~Ws~ 316 (329)
T cd06568 242 MKYDADSPLGLTWAGPVEVREAYDWDPAAYGPG-VPDEAILGVEAPLWTETIRNLDDLEYMAFPRLAGVAEIGWSP 316 (329)
T ss_pred cCCCCCCCCCcccCCCCCHHHHeeeCCCCCCCc-chhhCEEEEEEeecccccCCHHHHHHHHHhHHHHHHHHHhCC
Confidence 976322 2222 368999999999875333 457899999999999999874 79999999999999999996
No 7
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=100.00 E-value=9.7e-56 Score=424.19 Aligned_cols=271 Identities=32% Similarity=0.668 Sum_probs=218.2
Q ss_pred CCCCCcC--CcccChhhHHHHHHhcccCccccceEEeccCCCCCccccccccccccccccccccccccccccchhhHHHH
Q psy12961 2 KGSFHRT--KAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIA 79 (315)
Q Consensus 2 ~ga~~~~--~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~ 79 (315)
+|++++. +++||++|+++||+||+. |||+||| || |+| ||+.
T Consensus 58 ~ga~~~~~~~~~yT~~di~~lv~yA~~----~gI~VIP-ei-d~P-GH~~------------------------------ 100 (351)
T PF00728_consen 58 KGAYRPSDAGGYYTKEDIRELVAYAKE----RGIEVIP-EI-DTP-GHAE------------------------------ 100 (351)
T ss_dssp TTTESTTCTESEBEHHHHHHHHHHHHH----TT-EEEE-EE-EES-SS-H------------------------------
T ss_pred cCccccccccccCCHHHHHHHHHHHHH----cCCceee-ec-cCc-hHHH------------------------------
Confidence 5667652 249999999999999999 9999999 99 999 9993
Q ss_pred HHhhhhcCCCCCccccc-c-cc-CCCCCCCCCcCcCcCCCChhHHHHHHHHHHHHHhhcCCCeEEecCCCcccccccCCH
Q psy12961 80 ERLWSWGYGNPNLLCKI-N-IT-IPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDP 156 (315)
Q Consensus 80 e~~~s~~~~~p~l~~~~-~-~~-~p~~~~~~~~~~~l~~~~~~t~~fl~~ll~e~~~lF~~~~iHiGgDEv~~~~w~~~~ 156 (315)
++.+++|++...+ . .. .+.........++|||++|+|++|+++|++|++++|++++||||||||+..||.+++
T Consensus 101 ----~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~iHiGgDEv~~~~~~~~~ 176 (351)
T PF00728_consen 101 ----AWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPSKYIHIGGDEVNYNCWNNSP 176 (351)
T ss_dssp ----HHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTSSEEEEE-TSTTTHHHHCHH
T ss_pred ----HHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCCCeEEeCCcccccccccCCH
Confidence 3335566665421 0 00 000001112345899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCeEEEecCCCc-hhHHHHHHHcCCe
Q psy12961 157 NIRQFLADRGW-DGQQLQSYYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNR-NDLLNRITRDGYT 234 (315)
Q Consensus 157 ~~~~~~~~~g~-~~~~l~~~f~~~~~~~~~~~g~~~~~W~d~~~~~~~~~~~l~~~~iv~~W~~~~-~~~~~~~~~~G~~ 234 (315)
.|+++|+++|+ +..+|+.+|++++.++++++|+++++|+|++.+.+. ...++++++|++|++.+ ...+..++++||+
T Consensus 177 ~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~~~~W~D~~~~~~~-~~~~~~~~~i~~W~~~~~~~~~~~~~~~g~~ 255 (351)
T PF00728_consen 177 ECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKKPIIWNDMLDDFPD-ASLLPKDVIIQVWNYDWGPASAQEFAKKGYK 255 (351)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSEEEEESTTTTTTCC-GHCSCTTEEEEEESSTTHHHHHHHHHHTTHE
T ss_pred HHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCcEEEEccccccCCc-cccccCCceEEEeeccccchhhhHHHHhcCc
Confidence 99999999998 899999999999999999999999999999988542 24589999999999975 5678899999999
Q ss_pred EEEcC--CcccccccccCCCCC------CcchhhhhccCCCCCCCC-----cccc-CceeeeeeEeccCcC-CccchHHh
Q psy12961 235 AITSA--GWYLDVLDIRDGYGW------QQEWQRYYRIDPQEFPGT-----PEQH-SLVLGGEACIWGERV-DESNVESR 299 (315)
Q Consensus 235 ~I~s~--~~YLd~~~~~~~~~~------~~~w~~~Y~~~P~~~~~~-----~~~~-~~ilG~e~~lW~E~~-~~~~l~~~ 299 (315)
+|+|+ .+|||+......... ..+|+++|+|+|..+..+ +.+. ++|+|+++|+|+|++ ++++++++
T Consensus 256 vI~s~~~~~Yld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~W~E~~~~~~~l~~~ 335 (351)
T PF00728_consen 256 VINSPSDYLYLDPGQSPWPEEDGNYWAPFNTWSDFYNWDPAYFNTNSTQIDPAQKSERILGGEAALWSENIRDEEDLDYR 335 (351)
T ss_dssp EEESTHGTGBTTTTSSTTTSSSSBHTTSTHHHHHHHHHHHCHCTTTCSTTTTHHHCCCEEEEEEEEETTTTTSHHHHHHH
T ss_pred EEEcCCCceEEccCcCCCCccCcccccccccccccccccccccccccchhhhhcccCCCceeEEEeecCCCCCHHHHHHH
Confidence 99998 699999875322111 246789999998765432 3333 599999999999999 55679999
Q ss_pred hhhhHHHHHHhcccC
Q psy12961 300 IWPRGAAIAERLWSN 314 (315)
Q Consensus 300 l~PR~~A~AEr~Ws~ 314 (315)
+|||++|+|||+||+
T Consensus 336 ~~Pr~~A~AE~~Ws~ 350 (351)
T PF00728_consen 336 LWPRLAALAERLWSP 350 (351)
T ss_dssp HTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999999996
No 8
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=9.2e-54 Score=405.73 Aligned_cols=238 Identities=37% Similarity=0.668 Sum_probs=203.2
Q ss_pred CCCcCCcccChhhHHHHHHhcccCccccceEEeccCCCCCccccccccccccccccccccccccccccchhhHHHHHHhh
Q psy12961 4 SFHRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLW 83 (315)
Q Consensus 4 a~~~~~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~e~~~ 83 (315)
++++ +++||++|+++||+||++ |||+||| || |+| ||+.
T Consensus 62 ~~~~-~~~yT~~di~elv~yA~~----rgI~viP-Ei-D~P-GH~~---------------------------------- 99 (303)
T cd02742 62 PRSP-GGFYTYAQLKDIIEYAAA----RGIEVIP-EI-DMP-GHST---------------------------------- 99 (303)
T ss_pred CCCC-CCeECHHHHHHHHHHHHH----cCCEEEE-ec-cch-HHHH----------------------------------
Confidence 4554 689999999999999999 9999999 99 999 9993
Q ss_pred hhcCCCCCccccccccCCCCCCCCCcCcCcCCCChhHHHHHHHHHHHHHhhcCCCeEEecCCCcccccccCCHHHHHHHH
Q psy12961 84 SWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLA 163 (315)
Q Consensus 84 s~~~~~p~l~~~~~~~~p~~~~~~~~~~~l~~~~~~t~~fl~~ll~e~~~lF~~~~iHiGgDEv~~~~w~~~~~~~~~~~ 163 (315)
++.+++|++.+.|.... ......++|||++|+|++|+++|++|++++||+++|||||||+...
T Consensus 100 a~~~~~p~l~~~~~~~~----~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iHiGgDE~~~~------------- 162 (303)
T cd02742 100 AFVKSFPKLLTECYAGL----KLRDVFDPLDPTLPKGYDFLDDLFGEIAELFPDRYLHIGGDEAHFK------------- 162 (303)
T ss_pred HHHHhCHHhccCccccC----CCCCCCCccCCCCccHHHHHHHHHHHHHHhCCCCeEEecceecCCC-------------
Confidence 45578999987765211 1112356899999999999999999999999999999999999754
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCeEEEecCCCc---hhHHHHHHHcCCeEEEcCC
Q psy12961 164 DRGWDGQQLQSYYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNR---NDLLNRITRDGYTAITSAG 240 (315)
Q Consensus 164 ~~g~~~~~l~~~f~~~~~~~~~~~g~~~~~W~d~~~~~~~~~~~l~~~~iv~~W~~~~---~~~~~~~~~~G~~~I~s~~ 240 (315)
.+..+|+.+|++++.++++++|+++++|+|++... ..++++++|++|++.. ...+.+++++||++|+|++
T Consensus 163 ---~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~----~~l~~~~ii~~W~~~~~~~~~~~~~~~~~G~~vi~s~~ 235 (303)
T cd02742 163 ---QDRKHLMSQFIQRVLDIVKKKGKKVIVWQDGFDKK----MKLKEDVIVQYWDYDGDKYNVELPEAAAKGFPVILSNG 235 (303)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHcCCeEEEecccccCC----CCCCCCeEEEEccCCCCcchHHHHHHHHCCCCEEEeCC
Confidence 13577899999999999999999999999998762 2689999999999973 2567889999999999999
Q ss_pred cccccccccCCCCCCcchhhhhccCCCCCCCCccccCceeeeeeEeccCcCCcc-chHHhhhhhHHHHHHhccc
Q psy12961 241 WYLDVLDIRDGYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDES-NVESRIWPRGAAIAERLWS 313 (315)
Q Consensus 241 ~YLd~~~~~~~~~~~~~w~~~Y~~~P~~~~~~~~~~~~ilG~e~~lW~E~~~~~-~l~~~l~PR~~A~AEr~Ws 313 (315)
+||++.. ..+.+|+++|+++|..+ .+++..++|+|+++|+|+|++++. ++++++|||++|+|||+||
T Consensus 236 ~yly~~~-----~~~~~~~~~y~~~p~~~-~~~~~~~~vlG~~~~lW~E~~~~~~~~~~~~~pr~~a~AE~~Ws 303 (303)
T cd02742 236 YYLDIFI-----DGALDARKVYKNDPLAV-PTPQQKDLVLGVIACLWGETVKDTKTLQYRFWPRALAVAERSWS 303 (303)
T ss_pred ceeeeeC-----CCCCCHHHHhCCCCCCC-CCcccccceEEEEEeeeccccCCHHHHHHHHHHHHHHHHHHhhC
Confidence 8888721 13468999999999764 345567899999999999999986 7999999999999999997
No 9
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=3.1e-52 Score=398.90 Aligned_cols=239 Identities=25% Similarity=0.365 Sum_probs=199.8
Q ss_pred CCcccChhhHHHHHHhcccCccccceEEeccCCCCCccccccccccccccccccccccccccccchhhHHHHHHhhhhcC
Q psy12961 8 TKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSWGY 87 (315)
Q Consensus 8 ~~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~e~~~s~~~ 87 (315)
.+++||++|+|+||+||++ |||+||| || |+| ||+ .++.+
T Consensus 75 ~~~~YT~~di~eiv~yA~~----rgI~vIP-EI-D~P-GH~----------------------------------~a~~~ 113 (326)
T cd06564 75 NDGYYTKEEFKELIAYAKD----RGVNIIP-EI-DSP-GHS----------------------------------LAFTK 113 (326)
T ss_pred CCCcccHHHHHHHHHHHHH----cCCeEec-cC-CCc-HHH----------------------------------HHHHH
Confidence 4799999999999999999 9999999 99 999 999 34557
Q ss_pred CCCCccccccccCCCCCCCCCcCcCcCCCChhHHHHHHHHHHHHHhhcC--CCeEEecCCCcccccccCCHHHHHHHHhc
Q psy12961 88 GNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFH--DEFLHTGGDEVDFYCWLNDPNIRQFLADR 165 (315)
Q Consensus 88 ~~p~l~~~~~~~~p~~~~~~~~~~~l~~~~~~t~~fl~~ll~e~~~lF~--~~~iHiGgDEv~~~~w~~~~~~~~~~~~~ 165 (315)
++|++.+.+. ......++|||++|+|++|+++|++|++++|| ++||||||||+...
T Consensus 114 ~~pel~~~~~-------~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~~~~~~HiGgDE~~~~--------------- 171 (326)
T cd06564 114 AMPELGLKNP-------FSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPKSDTVHIGADEYAGD--------------- 171 (326)
T ss_pred hhHHhcCCCc-------ccCCCcccccCCCHHHHHHHHHHHHHHHHhcCCCCCEEEecccccccc---------------
Confidence 8999887542 11234578999999999999999999999999 99999999999864
Q ss_pred CCCHHHHHHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCeEEEecCCCchhHHHHHHHcCCeEEEcCC--ccc
Q psy12961 166 GWDGQQLQSYYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNRITRDGYTAITSAG--WYL 243 (315)
Q Consensus 166 g~~~~~l~~~f~~~~~~~~~~~g~~~~~W~d~~~~~~~~~~~l~~~~iv~~W~~~~~~~~~~~~~~G~~~I~s~~--~YL 243 (315)
.+..+++..|+++++++++++||++++|+|++...+. ...++++++|++|.+.+ ..+.+++++||++|+|++ +||
T Consensus 172 -~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~~~~~~~-~~~l~~~~iv~~W~~~~-~~~~~~~~~G~~vI~s~~~~~Y~ 248 (326)
T cd06564 172 -AGYAEAFRAYVNDLAKYVKDKGKTPRVWGDGIYYKGD-TTVLSKDVIINYWSYGW-ADPKELLNKGYKIINTNDGYLYI 248 (326)
T ss_pred -CccHHHHHHHHHHHHHHHHHcCCeEEEeCCcccCCCC-cccCCCCeEEEeCCCcc-cCHHHHHHCCCcEEEeCCCcEEE
Confidence 1356788999999999999999999999999876432 35789999999999874 357789999999999985 788
Q ss_pred ccccccCCCCCCcchhhhhcc-CCCCCC----CCccccCceeeeeeEeccCcCCc----cchHHhhhhhHHHHHHhcccC
Q psy12961 244 DVLDIRDGYGWQQEWQRYYRI-DPQEFP----GTPEQHSLVLGGEACIWGERVDE----SNVESRIWPRGAAIAERLWSN 314 (315)
Q Consensus 244 d~~~~~~~~~~~~~w~~~Y~~-~P~~~~----~~~~~~~~ilG~e~~lW~E~~~~----~~l~~~l~PR~~A~AEr~Ws~ 314 (315)
|+.... +....+++++|++ .|..+. ..+++.++|+|+++|||+|.++. .++++++|||++|+|||+|++
T Consensus 249 ~~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ilG~~~~lW~E~~~~~~t~~~~~~~~~pr~~a~Ae~~W~~ 326 (326)
T cd06564 249 VPGAGY--YGDYLNTEDIYNNWTPNKFGGTNATLPEGDPQILGGMFAIWNDDSDAGISEVDIYDRIFPALPAFAEKTWGG 326 (326)
T ss_pred eCCCcc--CCCccCHHHHHhcCCccccCCCCccCCCCCCCcchhheeeecCCCCcCcCHHHHHHHHHHHHHHHHHHhcCC
Confidence 876521 2334578999975 444442 33567899999999999999963 569999999999999999985
No 10
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.9e-43 Score=349.42 Aligned_cols=264 Identities=29% Similarity=0.509 Sum_probs=215.2
Q ss_pred cCCcccChhhHHHHHHhcccCccccceEEeccCCCCCccccccccccccccccccccccccccccchhhHHHHHHhhhhc
Q psy12961 7 RTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSWG 86 (315)
Q Consensus 7 ~~~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~e~~~s~~ 86 (315)
+.+||||++++++|++||+. |+|+||| || |+| ||+. +||
T Consensus 338 ~~ggfytqd~~relv~yAsa----r~ItviP-ei-D~P-gHa~--------------------------aav-------- 376 (732)
T COG3525 338 RMGGFYTQDDIRELVAYASA----RQITVIP-EI-DMP-GHAR--------------------------AAV-------- 376 (732)
T ss_pred cccCcccHHHHHHHHHHHhh----cCceecC-Cc-CCc-chhh--------------------------hhh--------
Confidence 36799999999999999999 9999999 99 999 9993 333
Q ss_pred CCCCCccccccccCCCCC-CCCCc-CcCcCCCChhHHHHHHHHHHHHHhhcCCCeEEecCCCcccccccC-CHHHHHHHH
Q psy12961 87 YGNPNLLCKINITIPDLN-TTQEY-WGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLN-DPNIRQFLA 163 (315)
Q Consensus 87 ~~~p~l~~~~~~~~p~~~-~~~~~-~~~l~~~~~~t~~fl~~ll~e~~~lF~~~~iHiGgDEv~~~~w~~-~~~~~~~~~ 163 (315)
.++|++..... .|+.. +++.+ ...|||+.+-+++|+++|++|+.++||+.+|||||||+....|+. +|.|++.|+
T Consensus 377 ~A~p~~~l~~a--~~ds~~sv~~~~n~~ln~tl~~t~~fldkv~dEv~~lfPs~~iHiGgDE~~~~qwk~~sp~~q~l~~ 454 (732)
T COG3525 377 VAYPDLNLGRA--DPDSYDSVQAYLNPVLNPTLDPTYQFLDKVLDEVADLFPSTTIHIGGDEFIDGQWKASSPLVQALME 454 (732)
T ss_pred hhCcccccccc--CCCcchhhhhcccccccccccHHHHHHHHHHHHHHHhCCcceEEeccchhccCeeeccCHHHHHHHH
Confidence 46775432111 22321 23332 347999999999999999999999999999999999999999999 999999999
Q ss_pred hcCC-CHHHHHHHHHHHHHHHHHHcCCeEEEeccccccccccCCCCCCCeEEEecCCCchhHHHHHHHcCCeEEEcCC--
Q psy12961 164 DRGW-DGQQLQSYYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNRITRDGYTAITSAG-- 240 (315)
Q Consensus 164 ~~g~-~~~~l~~~f~~~~~~~~~~~g~~~~~W~d~~~~~~~~~~~l~~~~iv~~W~~~~~~~~~~~~~~G~~~I~s~~-- 240 (315)
+.|. +..+|+.+|++++.+.++++|++.++|+|.+......+.-+-+++.|++|.+. +....++++||.+|++++
T Consensus 455 ~~G~~d~~~lq~~fi~q~~k~l~~~Gr~~igW~e~~~~~~~~~~~~t~~~~vm~W~~~--~~ai~~akqg~dvv~tp~~~ 532 (732)
T COG3525 455 KLGNKDTFELQSYFITQVGKTLASKGRRLIGWDEGAHGGDVNGTALTANVTVMSWYGK--DKAIELAKQGYDVVLTPAQF 532 (732)
T ss_pred HhccCCcchhhHHHHHHHHHHHHhcCceEEeecchhccCCCccccccCceEEEEEecc--hhhHHHHhhcccccccchhh
Confidence 9999 77999999999999999999999999999987743221122279999999987 345688999999999995
Q ss_pred cccccccccC----CCCCCc--chhh-hhccCCCCCC-CCccccCceeeeeeEeccCcCCcc-chHHhhhhhHHHHHHhc
Q psy12961 241 WYLDVLDIRD----GYGWQQ--EWQR-YYRIDPQEFP-GTPEQHSLVLGGEACIWGERVDES-NVESRIWPRGAAIAERL 311 (315)
Q Consensus 241 ~YLd~~~~~~----~~~~~~--~w~~-~Y~~~P~~~~-~~~~~~~~ilG~e~~lW~E~~~~~-~l~~~l~PR~~A~AEr~ 311 (315)
+|||+.+... |++|.. ...+ .|.++|.-.. ..++..++++|.|+|+|+|++.+. .+.+++|||++|+|||+
T Consensus 533 ~ylD~~q~~~peepg~~~a~t~~l~r~~y~~~~~g~~~~~de~~k~~~G~q~~lWse~~~~~~~f~~~vfprl~a~aEra 612 (732)
T COG3525 533 VYLDMLQIAAPEEPGYSWATTTPLERNKYAYDFAGKQPINDELAKRILGVQAALWSEHIQTRGRFEYMVFPRLAAAAERA 612 (732)
T ss_pred hhhhhhcccccccCCCccccccccchhhhhhcccCcccCChHHhhhhhhhHHHHHHHHhhhhhHHHHHhcchHHHHHHhh
Confidence 8999988543 344421 2234 7777775432 336778999999999999999886 58999999999999999
Q ss_pred ccCC
Q psy12961 312 WSNI 315 (315)
Q Consensus 312 Ws~~ 315 (315)
|+++
T Consensus 613 w~p~ 616 (732)
T COG3525 613 WTPM 616 (732)
T ss_pred CCch
Confidence 9975
No 11
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=7.5e-34 Score=269.38 Aligned_cols=239 Identities=15% Similarity=0.167 Sum_probs=175.0
Q ss_pred CcccChhhHHHHHHhcccCccccceEEeccCCCCCccccccccccccccccccccccccccccchhhHHHHHHhhhhcCC
Q psy12961 9 KAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSWGYG 88 (315)
Q Consensus 9 ~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~e~~~s~~~~ 88 (315)
+++||++|+++|++||++ |||+||| || |+| ||+. ++++
T Consensus 54 ~~~yT~~ei~ei~~yA~~----~gI~vIP-ei-d~p-GH~~----------------------------------~~l~- 91 (301)
T cd06565 54 RGAYTKEEIREIDDYAAE----LGIEVIP-LI-QTL-GHLE----------------------------------FILK- 91 (301)
T ss_pred CCCcCHHHHHHHHHHHHH----cCCEEEe-cC-CCH-HHHH----------------------------------HHHh-
Confidence 689999999999999999 9999999 99 999 9994 1222
Q ss_pred CCCccccccccCCCCCCCCCcCcCcCCCChhHHHHHHHHHHHHHhhcCCCeEEecCCCcccccccCCHHHHHHHHhcCCC
Q psy12961 89 NPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGWD 168 (315)
Q Consensus 89 ~p~l~~~~~~~~p~~~~~~~~~~~l~~~~~~t~~fl~~ll~e~~~lF~~~~iHiGgDEv~~~~w~~~~~~~~~~~~~g~~ 168 (315)
+|++..-+. .+.+.++|||++|+|++|+++|++|++++||+++|||||||++..+ .++.+++. .+.+
T Consensus 92 ~~~~~~l~~--------~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~HIG~DE~~~~g--~~~~~~~~---~~~~ 158 (301)
T cd06565 92 HPEFRHLRE--------VDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYIHIGMDEAYDLG--RGRSLRKH---GNLG 158 (301)
T ss_pred Ccccccccc--------cCCCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEECCCcccccC--CCHHHHHh---cCCC
Confidence 333332121 1124578999999999999999999999999999999999998643 24444432 2237
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEEEecccccc---ccccCCCCCCCeEEEecCCCch-----hHHHHHHHcCCeEEEcCC
Q psy12961 169 GQQLQSYYTRRALAIAKQLGFTSIVWQEVYEN---WRSESRRMDPDTVVQVWYGNRN-----DLLNRITRDGYTAITSAG 240 (315)
Q Consensus 169 ~~~l~~~f~~~~~~~~~~~g~~~~~W~d~~~~---~~~~~~~l~~~~iv~~W~~~~~-----~~~~~~~~~G~~~I~s~~ 240 (315)
..+|+..|+++++++++++|+++++|+|++.. .+.....||+++++++|++... ..+....+.|.+.+++++
T Consensus 159 ~~~l~~~~~~~v~~~v~~~g~~~~~W~D~~~~~~~~~~~~~~l~~~v~~~~W~y~~~~~~~~~~~~~~~~~~~~~~~~~g 238 (301)
T cd06565 159 RGELYLEHLKKVLKIIKKRGPKPMMWDDMLRKLSIEPEALSGLPKLVTPVVWDYYADLDEHDRPIGLWKKYGSVFAVAWG 238 (301)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEEhHHhcCCCCChHHHhCCCCCeEEEEecCcCCcchhhHhHHHHHHhCCCceEeee
Confidence 89999999999999999999999999999887 3333457999999999998842 245567778888888874
Q ss_pred -cccccccccCCCCCCcchhhhhccCCCCCCCCccccCceeeeeeEeccCcCCccchHHhhhhhHHHHHHhccc
Q psy12961 241 -WYLDVLDIRDGYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWS 313 (315)
Q Consensus 241 -~YLd~~~~~~~~~~~~~w~~~Y~~~P~~~~~~~~~~~~ilG~e~~lW~E~~~~~~l~~~l~PR~~A~AEr~Ws 313 (315)
++..-.. +. .......+-.+ +.......+.|.-...|++.-... ....++|-+++.|+-.|+
T Consensus 239 ~~~w~~~~-~~---~~~~~~n~~~~------~~~~~~~~~~G~~~T~W~d~g~~~-~~~~~~p~~~~~~~~~~~ 301 (301)
T cd06565 239 ASAWKGAT-PP---NDKHLENIKSW------LKAAKKNGVQGILLTGWGDYGHEA-VLCELLPGLIPSLALALG 301 (301)
T ss_pred echhccCC-CC---HHHHHHHHHHH------HHHHHHCCCCEEEEEecCCCCCcc-cHHHHHHHHHHHHHHhcC
Confidence 3322110 00 00011111011 011135569999999999875443 448899999999998885
No 12
>KOG2499|consensus
Probab=98.72 E-value=4.7e-09 Score=103.58 Aligned_cols=56 Identities=57% Similarity=1.210 Sum_probs=48.0
Q ss_pred ccccceEEeccCCCCCccccc-cccccccccccccccccccccccchhhHHHHHHhhh
Q psy12961 28 EWQRYYRIDPQEFPGTPEQHS-LVLGGEACIWGERVDESNVESRIWPRGAAIAERLWS 84 (315)
Q Consensus 28 ~~~rgI~VIP~Ei~d~P~GH~-~~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~e~~~s 84 (315)
++.+.+++.|..+..+| .|. .++|||+|||+|+|+..+++.|+|||++|+||++||
T Consensus 442 dw~~~Y~~~p~~~~g~~-~~k~lVlGGE~cmWgE~vD~t~L~~RlWPRAsA~AERLWS 498 (542)
T KOG2499|consen 442 DWRKVYNTEPLSGMGTP-EQKKLVLGGEVCMWGEYVDNTNLESRLWPRASAAAERLWS 498 (542)
T ss_pred ChhheeeccccccCCCH-HHhhheecceeeeehhhccccccccccccchhHHHHHhhc
Confidence 45577888885444666 664 489999999999999999999999999999999998
No 13
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=98.38 E-value=7.4e-08 Score=92.20 Aligned_cols=36 Identities=64% Similarity=1.200 Sum_probs=34.4
Q ss_pred ccccccccccccccccccccccchhhHHHHHHhhhh
Q psy12961 50 VLGGEACIWGERVDESNVESRIWPRGAAIAERLWSW 85 (315)
Q Consensus 50 ~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~e~~~s~ 85 (315)
|+|||+|||+|+++..+++||+|||++|+||++|+.
T Consensus 263 ilG~~~~lW~E~v~~~~~~~~~~PR~~A~AE~~Ws~ 298 (311)
T cd06570 263 ILGGEATMWAELVSEETIDSRLWPRTAAIAERLWSA 298 (311)
T ss_pred EEEEEEEEeecCcCHHHHHHHHhHHHHHHHHHhhCC
Confidence 799999999999988999999999999999999974
No 14
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=98.30 E-value=2e-07 Score=93.35 Aligned_cols=40 Identities=30% Similarity=0.598 Sum_probs=36.4
Q ss_pred cccccccccccccccccc-ccccccccchhhHHHHHHhhhh
Q psy12961 46 QHSLVLGGEACIWGERVD-ESNVESRIWPRGAAIAERLWSW 85 (315)
Q Consensus 46 GH~~~~g~~a~~w~e~~~-~~~~~~~~~pr~~a~~e~~~s~ 85 (315)
...+|+|||||||+|.|. ..+++||+|||++|+||++|+.
T Consensus 377 ~~~~ilG~e~~lWsE~v~~~~~l~~~~~PR~~A~AE~~Ws~ 417 (445)
T cd06569 377 GPKNILGLQGQLWSETIRTDEQLEYMVFPRLLALAERAWHK 417 (445)
T ss_pred HhcceeEEEEeeeccccCCHHHhHHHhhhHHHHHHHHHhcC
Confidence 456799999999999995 5899999999999999999985
No 15
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=98.28 E-value=2.2e-07 Score=89.63 Aligned_cols=57 Identities=33% Similarity=0.485 Sum_probs=44.0
Q ss_pred CccccceEEeccCCCCCc-cccccccccccccccccccc-cccccccchhhHHHHHHhhhh
Q psy12961 27 QEWQRYYRIDPQEFPGTP-EQHSLVLGGEACIWGERVDE-SNVESRIWPRGAAIAERLWSW 85 (315)
Q Consensus 27 ~~~~rgI~VIP~Ei~d~P-~GH~~~~g~~a~~w~e~~~~-~~~~~~~~pr~~a~~e~~~s~ 85 (315)
.+|++-++..| .- ..+ ++-.+|+|||+|||+|.++. .+++||+|||++|+||++|+.
T Consensus 258 ~~~~~~y~~~P-~~-~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~~PR~~a~AE~~Ws~ 316 (329)
T cd06568 258 VEVREAYDWDP-AA-YGPGVPDEAILGVEAPLWTETIRNLDDLEYMAFPRLAGVAEIGWSP 316 (329)
T ss_pred CCHHHHeeeCC-CC-CCCcchhhCEEEEEEeecccccCCHHHHHHHHHhHHHHHHHHHhCC
Confidence 45556667777 43 222 13346899999999999975 789999999999999999974
No 16
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=98.23 E-value=2.5e-07 Score=90.09 Aligned_cols=59 Identities=32% Similarity=0.491 Sum_probs=45.4
Q ss_pred CccccceEEeccCCCCCcccccccccccccccccccc-ccccccccchhhHHHHHHhhhh
Q psy12961 27 QEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVD-ESNVESRIWPRGAAIAERLWSW 85 (315)
Q Consensus 27 ~~~~rgI~VIP~Ei~d~P~GH~~~~g~~a~~w~e~~~-~~~~~~~~~pr~~a~~e~~~s~ 85 (315)
.++++-++.-|......++++..|+|||+|||+|.+. ..+++||+|||++|+||++|+.
T Consensus 285 ~~~~~~y~~~P~~~~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~~PR~~a~AE~~W~~ 344 (357)
T cd06563 285 NTLEKVYSFEPVPGGLTPEQAKRILGVQANLWTEYIPTPERVEYMAFPRLLALAEVAWTP 344 (357)
T ss_pred CCHHHHhcCCCCCCCCChhHhcCEEEEEEEecccccCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455666666622212224778899999999999994 5899999999999999999974
No 17
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=98.23 E-value=3.7e-07 Score=88.68 Aligned_cols=39 Identities=67% Similarity=1.422 Sum_probs=37.0
Q ss_pred ccccccccccccccccccccccccccchhhHHHHHHhhh
Q psy12961 46 QHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWS 84 (315)
Q Consensus 46 GH~~~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~e~~~s 84 (315)
++.+|+|||+|||+|.++..++++|+|||++|+||++|+
T Consensus 285 ~~~~ilG~~~~lW~E~~~~~~~~~~~~PR~~a~AE~~W~ 323 (348)
T cd06562 285 QKKLVLGGEACMWGEQVDDTNLDQRLWPRASALAERLWS 323 (348)
T ss_pred hcccEEEEEEEeeeeeeCccceeehhhhhHHHHHHHhhC
Confidence 677899999999999998899999999999999999996
No 18
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=97.92 E-value=2.5e-06 Score=81.32 Aligned_cols=41 Identities=54% Similarity=1.111 Sum_probs=36.6
Q ss_pred ccccccccccccccccccccc-cccccccchhhHHHHHHhhh
Q psy12961 44 PEQHSLVLGGEACIWGERVDE-SNVESRIWPRGAAIAERLWS 84 (315)
Q Consensus 44 P~GH~~~~g~~a~~w~e~~~~-~~~~~~~~pr~~a~~e~~~s 84 (315)
|+++.+++||++|+|+|.+.. +.+++|+|||++|+||++||
T Consensus 262 ~~~~~~vlG~~~~lW~E~~~~~~~~~~~~~pr~~a~AE~~Ws 303 (303)
T cd02742 262 PQQKDLVLGVIACLWGETVKDTKTLQYRFWPRALAVAERSWS 303 (303)
T ss_pred cccccceEEEEEeeeccccCCHHHHHHHHHHHHHHHHHHhhC
Confidence 336677999999999999976 59999999999999999985
No 19
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=97.81 E-value=5.3e-06 Score=79.80 Aligned_cols=41 Identities=39% Similarity=0.788 Sum_probs=36.6
Q ss_pred cccccccccccccccccccc----ccccccccchhhHHHHHHhhh
Q psy12961 44 PEQHSLVLGGEACIWGERVD----ESNVESRIWPRGAAIAERLWS 84 (315)
Q Consensus 44 P~GH~~~~g~~a~~w~e~~~----~~~~~~~~~pr~~a~~e~~~s 84 (315)
|+++..++|+++|||+|.++ ..++++|+|||++|+||++|+
T Consensus 281 ~~~~~~ilG~~~~lW~E~~~~~~t~~~~~~~~~pr~~a~Ae~~W~ 325 (326)
T cd06564 281 PEGDPQILGGMFAIWNDDSDAGISEVDIYDRIFPALPAFAEKTWG 325 (326)
T ss_pred CCCCCCcchhheeeecCCCCcCcCHHHHHHHHHHHHHHHHHHhcC
Confidence 33667899999999999994 499999999999999999996
No 20
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=97.55 E-value=2e-05 Score=75.71 Aligned_cols=37 Identities=57% Similarity=1.177 Sum_probs=34.7
Q ss_pred ccccccccccccccc-cccccccccchhhHHHHHHhhh
Q psy12961 48 SLVLGGEACIWGERV-DESNVESRIWPRGAAIAERLWS 84 (315)
Q Consensus 48 ~~~~g~~a~~w~e~~-~~~~~~~~~~pr~~a~~e~~~s 84 (315)
..|+||++|+|+|.+ +..++++|+|||++|+||++|+
T Consensus 312 ~~i~G~~~~~W~E~~~~~~~l~~~~~Pr~~A~AE~~Ws 349 (351)
T PF00728_consen 312 ERILGGEAALWSENIRDEEDLDYRLWPRLAALAERLWS 349 (351)
T ss_dssp CCEEEEEEEEETTTTTSHHHHHHHHTTHHHHHHHHHHS
T ss_pred CCCceeEEEeecCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 479999999999999 6799999999999999999996
No 21
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=95.34 E-value=0.0037 Score=64.69 Aligned_cols=38 Identities=37% Similarity=0.685 Sum_probs=34.4
Q ss_pred ccccccccccccccccc-cccccccchhhHHHHHHhhhh
Q psy12961 48 SLVLGGEACIWGERVDE-SNVESRIWPRGAAIAERLWSW 85 (315)
Q Consensus 48 ~~~~g~~a~~w~e~~~~-~~~~~~~~pr~~a~~e~~~s~ 85 (315)
.++.|.|||+|+|++.. ..+++|++||++|++|+.|+.
T Consensus 577 k~~~G~q~~lWse~~~~~~~f~~~vfprl~a~aEraw~p 615 (732)
T COG3525 577 KRILGVQAALWSEHIQTRGRFEYMVFPRLAAAAERAWTP 615 (732)
T ss_pred hhhhhhHHHHHHHHhhhhhHHHHHhcchHHHHHHhhCCc
Confidence 34799999999999965 999999999999999999875
No 22
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=92.29 E-value=1.5 Score=42.07 Aligned_cols=75 Identities=13% Similarity=0.298 Sum_probs=48.4
Q ss_pred CcCCCChhHHHHHHHHHHHHHhhcCCCeEEecCCCccc--ccccCC-HHHHHHHHhcC---C-CH---------HHHHHH
Q psy12961 112 PIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDF--YCWLND-PNIRQFLADRG---W-DG---------QQLQSY 175 (315)
Q Consensus 112 ~l~~~~~~t~~fl~~ll~e~~~lF~~~~iHiGgDEv~~--~~w~~~-~~~~~~~~~~g---~-~~---------~~l~~~ 175 (315)
-|||.+|++.+|+.+++.|++.-.+-.=||+= -+.. ..+..+ +..+.|.+..| . +. .+--..
T Consensus 130 ~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlD--dy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~ 207 (311)
T PF02638_consen 130 WLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLD--DYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINN 207 (311)
T ss_pred EECCCCHHHHHHHHHHHHHHHhcCCCCeEEec--ccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHH
Confidence 69999999999999999999998887777753 2211 112222 23344444443 1 11 233356
Q ss_pred HHHHHHHHHHHcC
Q psy12961 176 YTRRALAIAKQLG 188 (315)
Q Consensus 176 f~~~~~~~~~~~g 188 (315)
|++++.+.+|+..
T Consensus 208 ~V~~i~~~ik~~k 220 (311)
T PF02638_consen 208 FVKRIYDAIKAIK 220 (311)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888765
No 23
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=82.31 E-value=8.2 Score=37.33 Aligned_cols=125 Identities=15% Similarity=0.105 Sum_probs=73.9
Q ss_pred hhhHHHHHHhcccCccccceEEeccCCCCCccccccccccccccccccccccccccccchhhHHHHHHhhhhcCCCCCcc
Q psy12961 14 IEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSWGYGNPNLL 93 (315)
Q Consensus 14 ~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~e~~~s~~~~~p~l~ 93 (315)
..|+++|++.+++ +||-+|- -| -+++.... ...+|++.
T Consensus 60 i~D~~~l~~~l~e----~gIY~IA-RI-v~FkD~~l------------------------------------a~~~pe~a 97 (316)
T PF13200_consen 60 IKDLKALVKKLKE----HGIYPIA-RI-VVFKDPVL------------------------------------AEAHPEWA 97 (316)
T ss_pred ccCHHHHHHHHHH----CCCEEEE-EE-EEecChHH------------------------------------hhhChhhE
Confidence 4799999999999 9999999 77 55533331 12366654
Q ss_pred ccccccCCCCCCCCCcCcCcCCCChhHHHHHHHHHHHHHhhcCCCeEEecCCCcccccccCCHH--HHHHHH-hcCC---
Q psy12961 94 CKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPN--IRQFLA-DRGW--- 167 (315)
Q Consensus 94 ~~~~~~~p~~~~~~~~~~~l~~~~~~t~~fl~~ll~e~~~lF~~~~iHiGgDEv~~~~w~~~~~--~~~~~~-~~g~--- 167 (315)
-......++.. .....-+||.++++.+.+-+|..|++++ |-||+.+. +-..|. ..+.+. ..+-
T Consensus 98 v~~~~G~~w~d--~~~~~WvnP~~~evw~Y~i~IA~Eaa~~--------GFdEIqfD-YIRFP~~~~~~~l~y~~~~~~~ 166 (316)
T PF13200_consen 98 VKTKDGSVWRD--NEGEAWVNPYSKEVWDYNIDIAKEAAKL--------GFDEIQFD-YIRFPDEGRLSGLDYSENDTEE 166 (316)
T ss_pred EECCCCCcccC--CCCCccCCCCCHHHHHHHHHHHHHHHHc--------CCCEEEee-eeecCCCCcccccccCCCCCcc
Confidence 32111111111 1123359999999999999999999875 55554321 000111 000000 0000
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCeE
Q psy12961 168 DGQQLQSYYTRRALAIAKQLGFTS 191 (315)
Q Consensus 168 ~~~~l~~~f~~~~~~~~~~~g~~~ 191 (315)
+..+....|++.+.+.++..|...
T Consensus 167 ~r~~aI~~Fl~~a~~~l~~~~v~v 190 (316)
T PF13200_consen 167 SRVDAITDFLAYAREELHPYGVPV 190 (316)
T ss_pred hHHHHHHHHHHHHHHHHhHcCCCE
Confidence 134556789999999999988654
No 24
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.71 E-value=15 Score=36.92 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=25.4
Q ss_pred cCcCCCChhHHHHHHHHHHHHHhhcCCCeE
Q psy12961 111 GPIDPTKSSSYDFVRDLFTEVRSVFHDEFL 140 (315)
Q Consensus 111 ~~l~~~~~~t~~fl~~ll~e~~~lF~~~~i 140 (315)
-.|||.+|++.+|+.+++-|+..-.+.+=|
T Consensus 174 ~~ldPg~Pevq~~i~~lv~evV~~YdvDGI 203 (418)
T COG1649 174 VWLDPGIPEVQDFITSLVVEVVRNYDVDGI 203 (418)
T ss_pred eEeCCCChHHHHHHHHHHHHHHhCCCCCce
Confidence 369999999999999999999987764433
No 25
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=74.09 E-value=8.4 Score=32.36 Aligned_cols=85 Identities=11% Similarity=0.054 Sum_probs=52.6
Q ss_pred cccChhhHHHHHHhcccCccccceEEeccCCCCCccccccccccccccccccccccccccccchhhHHHHHHhhhhcCCC
Q psy12961 10 AVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSWGYGN 89 (315)
Q Consensus 10 ~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~e~~~s~~~~~ 89 (315)
..+.++=++++|+-|++ +||+|+- -+ +.- -+.. + ...+
T Consensus 39 p~L~~Dllge~v~a~h~----~Girv~a-y~-~~~-~d~~------------~-----------------------~~~H 76 (132)
T PF14871_consen 39 PGLKRDLLGEQVEACHE----RGIRVPA-YF-DFS-WDED------------A-----------------------AERH 76 (132)
T ss_pred CCCCcCHHHHHHHHHHH----CCCEEEE-EE-eee-cChH------------H-----------------------HHhC
Confidence 45677778999999999 9999999 77 443 2321 1 1457
Q ss_pred CCccccccccCCCCCCCC--CcCcCcCCCChhHHHHHHHHHHHHHhhcCC
Q psy12961 90 PNLLCKINITIPDLNTTQ--EYWGPIDPTKSSSYDFVRDLFTEVRSVFHD 137 (315)
Q Consensus 90 p~l~~~~~~~~p~~~~~~--~~~~~l~~~~~~t~~fl~~ll~e~~~lF~~ 137 (315)
|+-.....+-.|-..... ..+..+|+.. .-.+|+...++|+++.++-
T Consensus 77 PeW~~~~~~G~~~~~~~~~~~~~~~~c~ns-~Y~e~~~~~i~Ei~~~y~~ 125 (132)
T PF14871_consen 77 PEWFVRDADGRPMRGERFGYPGWYTCCLNS-PYREFLLEQIREILDRYDV 125 (132)
T ss_pred CceeeECCCCCCcCCCCcCCCCceecCCCc-cHHHHHHHHHHHHHHcCCC
Confidence 776543221111000011 1234567755 4559999999999998873
No 26
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=70.93 E-value=16 Score=35.58 Aligned_cols=106 Identities=14% Similarity=0.254 Sum_probs=61.8
Q ss_pred cCCcccChhhHHHHHHhcccCccccceEEeccCCCCCccccccccccccccccccccccccccccchhhHHHHHHhhhhc
Q psy12961 7 RTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSWG 86 (315)
Q Consensus 7 ~~~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~e~~~s~~ 86 (315)
|..|.|.=+.+..+++.|++ .||.||- .+| .+.. |. |- .
T Consensus 39 P~eG~ydF~~lD~~l~~a~~----~Gi~viL----~~~-~~~~-----------------------P~--------Wl-~ 77 (374)
T PF02449_consen 39 PEEGQYDFSWLDRVLDLAAK----HGIKVIL----GTP-TAAP-----------------------PA--------WL-Y 77 (374)
T ss_dssp SBTTB---HHHHHHHHHHHC----TT-EEEE----EEC-TTTS------------------------H--------HH-H
T ss_pred CCCCeeecHHHHHHHHHHHh----ccCeEEE----Eec-cccc-----------------------cc--------ch-h
Confidence 55678888889999999999 9999998 555 4431 11 22 2
Q ss_pred CCCCCccccccccCCCCCC-CCCcCcCcCCCChhHHHHHHHHHHHHHhhcCC-C---eEEecCCCccc-ccccCCHHHHH
Q psy12961 87 YGNPNLLCKINITIPDLNT-TQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHD-E---FLHTGGDEVDF-YCWLNDPNIRQ 160 (315)
Q Consensus 87 ~~~p~l~~~~~~~~p~~~~-~~~~~~~l~~~~~~t~~fl~~ll~e~~~lF~~-~---~iHiGgDEv~~-~~w~~~~~~~~ 160 (315)
+.+|+...... ++.. ..+.....|+.+|...+.+.++++.+.+-+.+ + -+|| ..|... .|+ |+.|++
T Consensus 78 ~~~Pe~~~~~~----~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i-~NE~~~~~~~--~~~~~~ 150 (374)
T PF02449_consen 78 DKYPEILPVDA----DGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQI-DNEPGYHRCY--SPACQA 150 (374)
T ss_dssp CCSGCCC-B-T----TTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEE-CCSTTCTS----SHHHHH
T ss_pred hhcccccccCC----CCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEe-ccccCcCcCC--ChHHHH
Confidence 46888654221 1111 01122357899999999999999999887763 2 4566 345544 343 455543
No 27
>PLN02960 alpha-amylase
Probab=60.59 E-value=1e+02 Score=34.04 Aligned_cols=36 Identities=11% Similarity=0.065 Sum_probs=29.0
Q ss_pred CCcCCcccChhhHHHHHHhcccCccccceEEeccCCCCCccccc
Q psy12961 5 FHRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHS 48 (315)
Q Consensus 5 ~~~~~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~ 48 (315)
|++...+=|.+|++.+|+-|.+ +||.||- .+ +| .|+
T Consensus 456 fa~~~~yGtp~dfk~LVd~aH~----~GI~VIL-Dv--V~-NH~ 491 (897)
T PLN02960 456 FAVSSRFGTPDDFKRLVDEAHG----LGLLVFL-DI--VH-SYA 491 (897)
T ss_pred CCcccccCCHHHHHHHHHHHHH----CCCEEEE-Ee--cc-ccc
Confidence 4454455589999999999999 9999999 43 56 888
No 28
>PRK14706 glycogen branching enzyme; Provisional
Probab=60.27 E-value=90 Score=33.13 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=28.6
Q ss_pred CCcCCcccChhhHHHHHHhcccCccccceEEeccCCCCCccccc
Q psy12961 5 FHRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHS 48 (315)
Q Consensus 5 ~~~~~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~ 48 (315)
|++...+=|.+|+|.+|+-|.+ +||.||- .+ +| .|+
T Consensus 207 ~~~~~~~g~~~~~~~lv~~~H~----~gi~Vil-D~--v~-nH~ 242 (639)
T PRK14706 207 YAPTSRLGTPEDFKYLVNHLHG----LGIGVIL-DW--VP-GHF 242 (639)
T ss_pred cccccccCCHHHHHHHHHHHHH----CCCEEEE-Ee--cc-ccc
Confidence 4454444488999999999999 9999999 43 55 787
No 29
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=59.50 E-value=1.1e+02 Score=33.22 Aligned_cols=80 Identities=11% Similarity=-0.052 Sum_probs=46.5
Q ss_pred CcCCCChhHHHHHHHHHHHHHhhcC-----------CCeEEecCCCcccccccCCHHHHHHHHhcCC--CHHHHHHHHHH
Q psy12961 112 PIDPTKSSSYDFVRDLFTEVRSVFH-----------DEFLHTGGDEVDFYCWLNDPNIRQFLADRGW--DGQQLQSYYTR 178 (315)
Q Consensus 112 ~l~~~~~~t~~fl~~ll~e~~~lF~-----------~~~iHiGgDEv~~~~w~~~~~~~~~~~~~g~--~~~~l~~~f~~ 178 (315)
.+|-.++++.+||.+.++-.++-|. --|.|-|-..-+...+.+ ..|. +.+. ..|++
T Consensus 359 ~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~---------~~g~~~d~~a--~~fL~ 427 (758)
T PLN02447 359 LFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNE---------YFGMATDVDA--VVYLM 427 (758)
T ss_pred eecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCccc---------ccCCccChHH--HHHHH
Confidence 4788899999999999998887653 125554543322111111 0111 1121 25888
Q ss_pred HHHHHHHHcCCeEEEecccccccc
Q psy12961 179 RALAIAKQLGFTSIVWQEVYENWR 202 (315)
Q Consensus 179 ~~~~~~~~~g~~~~~W~d~~~~~~ 202 (315)
.+.+.+++.....+.=-|-...++
T Consensus 428 ~~N~~i~~~~p~~~~IAEd~s~~p 451 (758)
T PLN02447 428 LANDLLHGLYPEAVTIAEDVSGMP 451 (758)
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCC
Confidence 999999987655544444444443
No 30
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=55.65 E-value=68 Score=34.27 Aligned_cols=77 Identities=13% Similarity=0.005 Sum_probs=52.3
Q ss_pred cCcCCCChhHHHHHHHHHHHHHhhcCCCeEEecCCCcccccccCCHHHHHHHHhcCC--CHH-------HH---------
Q psy12961 111 GPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGW--DGQ-------QL--------- 172 (315)
Q Consensus 111 ~~l~~~~~~t~~fl~~ll~e~~~lF~~~~iHiGgDEv~~~~w~~~~~~~~~~~~~g~--~~~-------~l--------- 172 (315)
..|+|.+|++.++|++|+.|++.-.+-.=||+=-|=+-..-=..+|...+..++.|+ +.. .+
T Consensus 433 ~rl~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~ 512 (671)
T PRK14582 433 RRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSR 512 (671)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCCCceEEecccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHH
Confidence 459999999999999999999998777777776655532211234555555566676 222 12
Q ss_pred -HHHHHHHHHHHHHHc
Q psy12961 173 -QSYYTRRALAIAKQL 187 (315)
Q Consensus 173 -~~~f~~~~~~~~~~~ 187 (315)
...|..++.+.++..
T Consensus 513 ~l~~f~~~l~~~v~~~ 528 (671)
T PRK14582 513 ALTDFTLELSARVKAI 528 (671)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 235778888888764
No 31
>PRK12568 glycogen branching enzyme; Provisional
Probab=52.82 E-value=41 Score=36.26 Aligned_cols=37 Identities=5% Similarity=0.030 Sum_probs=30.2
Q ss_pred CCCcCCcccChhhHHHHHHhcccCccccceEEeccCCCCCccccc
Q psy12961 4 SFHRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHS 48 (315)
Q Consensus 4 a~~~~~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~ 48 (315)
-|++...+=|.+|+|++|+.|.+ +||.||- .+ +| .|+
T Consensus 308 ~~a~~~~~G~~~dfk~lV~~~H~----~Gi~VIl-D~--V~-nH~ 344 (730)
T PRK12568 308 LYAPTARHGSPDGFAQFVDACHR----AGIGVIL-DW--VS-AHF 344 (730)
T ss_pred CCccCcccCCHHHHHHHHHHHHH----CCCEEEE-Ee--cc-ccC
Confidence 45555555589999999999999 9999999 54 56 888
No 32
>PLN03244 alpha-amylase; Provisional
Probab=50.53 E-value=2.5e+02 Score=30.90 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=30.3
Q ss_pred CCCcCCcccChhhHHHHHHhcccCccccceEEeccCCCCCccccc
Q psy12961 4 SFHRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHS 48 (315)
Q Consensus 4 a~~~~~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~ 48 (315)
=|++...+=|.+|+|.+|.-|.+ +||.||- .+ ++ .|+
T Consensus 430 fFApssRYGTPeDLK~LVD~aH~----~GI~VIL-Dv--V~-NH~ 466 (872)
T PLN03244 430 FFAASSRYGTPDDFKRLVDEAHG----LGLLVFL-DI--VH-SYA 466 (872)
T ss_pred ccccCcccCCHHHHHHHHHHHHH----CCCEEEE-Ee--cC-ccC
Confidence 36666666699999999999999 9999999 33 45 777
No 33
>PRK14705 glycogen branching enzyme; Provisional
Probab=49.75 E-value=1.6e+02 Score=33.93 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=29.0
Q ss_pred CCcCCcccChhhHHHHHHhcccCccccceEEeccCCCCCccccc
Q psy12961 5 FHRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHS 48 (315)
Q Consensus 5 ~~~~~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~ 48 (315)
|+++..+=|.+|+|.+|+.|.+ +||.||- .+ +| .|.
T Consensus 805 ~ap~~ryGt~~dfk~lVd~~H~----~GI~VIL-D~--V~-nH~ 840 (1224)
T PRK14705 805 FAPTSRFGHPDEFRFLVDSLHQ----AGIGVLL-DW--VP-AHF 840 (1224)
T ss_pred CCcCcccCCHHHHHHHHHHHHH----CCCEEEE-Ee--cc-ccC
Confidence 4454445589999999999999 9999999 32 66 888
No 34
>smart00642 Aamy Alpha-amylase domain.
Probab=44.23 E-value=13 Score=32.33 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=24.9
Q ss_pred ChhhHHHHHHhcccCccccceEEeccCCCCCccccc
Q psy12961 13 TIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHS 48 (315)
Q Consensus 13 T~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~ 48 (315)
|.+|++++|+-|++ +||+||- .+ +| -|+
T Consensus 68 t~~d~~~lv~~~h~----~Gi~vil-D~--V~-NH~ 95 (166)
T smart00642 68 TMEDFKELVDAAHA----RGIKVIL-DV--VI-NHT 95 (166)
T ss_pred CHHHHHHHHHHHHH----CCCEEEE-EE--CC-CCC
Confidence 77999999999999 9999999 65 45 788
No 35
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=42.89 E-value=50 Score=32.92 Aligned_cols=89 Identities=11% Similarity=0.152 Sum_probs=55.9
Q ss_pred hHHHHHHhcccCccccceEEeccCCCCCccccccccccccccccccccccccccccchhhHHHHHHhhhhcCCCCCcccc
Q psy12961 16 DIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSWGYGNPNLLCK 95 (315)
Q Consensus 16 di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~~~g~~a~~w~e~~~~~~~~~~~~pr~~a~~e~~~s~~~~~p~l~~~ 95 (315)
-++.|+++.++.-++-||=+-| |. -.| +... | +.+|+....
T Consensus 105 Gl~~l~~~i~~~Gmk~GlW~eP-e~-v~~-~S~l-------------------~-----------------~~hPdw~l~ 145 (394)
T PF02065_consen 105 GLKPLADYIHSLGMKFGLWFEP-EM-VSP-DSDL-------------------Y-----------------REHPDWVLR 145 (394)
T ss_dssp HHHHHHHHHHHTT-EEEEEEET-TE-EES-SSCH-------------------C-----------------CSSBGGBTC
T ss_pred cHHHHHHHHHHCCCeEEEEecc-cc-ccc-hhHH-------------------H-----------------HhCccceee
Confidence 4899999999988888999999 87 444 2220 1 345554321
Q ss_pred ccccCCCCCCCCC-cCcCcCCCChhHHHHHHHHHHHHHhhcCCCeEEecCCCc
Q psy12961 96 INITIPDLNTTQE-YWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEV 147 (315)
Q Consensus 96 ~~~~~p~~~~~~~-~~~~l~~~~~~t~~fl~~ll~e~~~lF~~~~iHiGgDEv 147 (315)
.. +...... ..-.||+++|++.+++.+.+..+..-..-.||.+-.-..
T Consensus 146 ~~----~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~ 194 (394)
T PF02065_consen 146 DP----GRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRD 194 (394)
T ss_dssp CT----TSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-
T ss_pred cC----CCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccC
Confidence 11 1100011 223699999999999999999987777778888766553
No 36
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=41.93 E-value=17 Score=38.48 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=33.5
Q ss_pred CCCCcCCcccChhhHHHHHHhcccCccccceEEeccCCCCCcccccc
Q psy12961 3 GSFHRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSL 49 (315)
Q Consensus 3 ga~~~~~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~ 49 (315)
|=|+|++.+=|.+|+|.+|..|.+ +||.||- . -+| +|.-
T Consensus 202 g~yAp~sryGtPedfk~fVD~aH~----~GIgViL-D--~V~-~HF~ 240 (628)
T COG0296 202 GYYAPTSRYGTPEDFKALVDAAHQ----AGIGVIL-D--WVP-NHFP 240 (628)
T ss_pred eeccccccCCCHHHHHHHHHHHHH----cCCEEEE-E--ecC-CcCC
Confidence 457887777799999999999999 9999998 3 588 9983
No 37
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=41.33 E-value=1.9e+02 Score=27.00 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHcCCeEE-----EeccccccccccCCCCCCCeEEEecCCCchhHHHHHHHcCCeEEEcC
Q psy12961 171 QLQSYYTRRALAIAKQLGFTSI-----VWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNRITRDGYTAITSA 239 (315)
Q Consensus 171 ~l~~~f~~~~~~~~~~~g~~~~-----~W~d~~~~~~~~~~~l~~~~iv~~W~~~~~~~~~~~~~~G~~~I~s~ 239 (315)
+.|..++.+-.+++++.++-.+ .++|++.--. ....+...|+-...++ .+.+.++.+.||-+-+|.
T Consensus 108 ~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~--~~~~~~~gi~HcFsGs-~e~a~~~~d~G~yisisG 178 (256)
T COG0084 108 ERQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILK--EEGAPVGGVLHCFSGS-AEEARKLLDLGFYISISG 178 (256)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHH--hcCCCCCEEEEccCCC-HHHHHHHHHcCeEEEECc
Confidence 3456677777889999997655 4555543211 0112445555555554 567889999997666664
No 38
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=38.72 E-value=25 Score=34.88 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=31.7
Q ss_pred CcCCcccChhhHHHHHHhcccCccccceEEeccCCCCCc---ccccc
Q psy12961 6 HRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTP---EQHSL 49 (315)
Q Consensus 6 ~~~~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P---~GH~~ 49 (315)
.|.+.++|++|++.|.+.|.+ +||.||-=|| -.| .||.+
T Consensus 169 NP~Grvwt~eeL~~i~elc~k----h~v~VISDEI-HaDlv~~g~~h 210 (388)
T COG1168 169 NPTGRVWTKEELRKIAELCLR----HGVRVISDEI-HADLVLGGHKH 210 (388)
T ss_pred CCCCccccHHHHHHHHHHHHH----cCCEEEeecc-cccccccCCCc
Confidence 367889999999999999999 9999998677 322 45554
No 39
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=38.59 E-value=22 Score=35.19 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=25.4
Q ss_pred cCCcccChhhHHHHHHhcccCccccceEEec
Q psy12961 7 RTKAVYTIEDIKSIIEYGWQQEWQRYYRIDP 37 (315)
Q Consensus 7 ~~~~~YT~~di~eiv~yA~~~~~~rgI~VIP 37 (315)
|++.+||++++++|+++|++ ++|-||=
T Consensus 175 PTGav~~~~~l~~i~~~a~~----~~i~ii~ 201 (393)
T COG0436 175 PTGAVYSKEELKAIVELARE----HDIIIIS 201 (393)
T ss_pred CcCcCCCHHHHHHHHHHHHH----cCeEEEE
Confidence 67899999999999999999 9999987
No 40
>PRK12313 glycogen branching enzyme; Provisional
Probab=37.73 E-value=85 Score=33.08 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=25.9
Q ss_pred cccChhhHHHHHHhcccCccccceEEeccCCCCCccccc
Q psy12961 10 AVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHS 48 (315)
Q Consensus 10 ~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~ 48 (315)
.+=|.+|+|++|+-|.+ +||.||- .+ +| .|+
T Consensus 215 ~~Gt~~d~k~lv~~~H~----~Gi~Vil-D~--V~-nH~ 245 (633)
T PRK12313 215 RYGTPEDFMYLVDALHQ----NGIGVIL-DW--VP-GHF 245 (633)
T ss_pred CCCCHHHHHHHHHHHHH----CCCEEEE-EE--CC-CCC
Confidence 34478899999999999 9999999 44 45 788
No 41
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=35.71 E-value=2.6e+02 Score=25.20 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=55.5
Q ss_pred CcCcCCCChhHHHHHHHHHHHHHhhcC-CCeEEecCCCcccccccCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHcC
Q psy12961 110 WGPIDPTKSSSYDFVRDLFTEVRSVFH-DEFLHTGGDEVDFYCWLNDPNIRQFLADRGWDGQQLQSYYTRRALAIAKQLG 188 (315)
Q Consensus 110 ~~~l~~~~~~t~~fl~~ll~e~~~lF~-~~~iHiGgDEv~~~~w~~~~~~~~~~~~~g~~~~~l~~~f~~~~~~~~~~~g 188 (315)
++.+.+.+-.++ ++.+++..+..+.. .-++=.|.||... .+....++.|.++.++-..+.+...+.++..|
T Consensus 31 y~~~HiGH~r~~-v~~Dvl~R~lr~~G~~V~~~~g~dd~g~-------ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l~ 102 (213)
T cd00672 31 YDYAHIGHARTY-VVFDVLRRYLEDLGYKVRYVQNITDIDD-------KIIKRAREEGLSWKEVADYYTKEFFEDMKALN 102 (213)
T ss_pred CCCcccccchhH-HHHHHHHHHHHhcCCeeEEEeecCCCCC-------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 345666777776 67788888888776 4566788899842 35555677888999999999999999999888
Q ss_pred Ce
Q psy12961 189 FT 190 (315)
Q Consensus 189 ~~ 190 (315)
..
T Consensus 103 i~ 104 (213)
T cd00672 103 VL 104 (213)
T ss_pred CC
Confidence 65
No 42
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=32.40 E-value=32 Score=32.59 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=17.5
Q ss_pred cccChhhHHHHHHhcccCccccceEEec
Q psy12961 10 AVYTIEDIKSIIEYGWQQEWQRYYRIDP 37 (315)
Q Consensus 10 ~~YT~~di~eiv~yA~~~~~~rgI~VIP 37 (315)
..+...++++||+||++ +||.|+-
T Consensus 68 ~~~~~~dl~elv~Ya~~----KgVgi~l 91 (273)
T PF10566_consen 68 KPIPDFDLPELVDYAKE----KGVGIWL 91 (273)
T ss_dssp -B-TT--HHHHHHHHHH----TT-EEEE
T ss_pred ccCCccCHHHHHHHHHH----cCCCEEE
Confidence 46788999999999999 9988877
No 43
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=31.79 E-value=17 Score=33.05 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=24.4
Q ss_pred ChhhHHHHHHhcccCccccceEEeccCCCCCccccc
Q psy12961 13 TIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHS 48 (315)
Q Consensus 13 T~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~ 48 (315)
|.+|++++|+-|++ |||+||- |+.-.|+
T Consensus 50 t~~d~~~Lv~~~h~----~gi~Vil----D~V~NH~ 77 (316)
T PF00128_consen 50 TMEDFKELVDAAHK----RGIKVIL----DVVPNHT 77 (316)
T ss_dssp HHHHHHHHHHHHHH----TTCEEEE----EEETSEE
T ss_pred hhhhhhhhhhcccc----ccceEEE----eeecccc
Confidence 78999999999999 9999999 4442688
No 44
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=29.87 E-value=3.7e+02 Score=23.37 Aligned_cols=86 Identities=15% Similarity=0.240 Sum_probs=41.8
Q ss_pred HHHhhc-CCCeEEecCCCcccccccCCHHHHHHHHhcCCCHHHHHHHHHHHHHH----HHHHcCCeEEEecccccccccc
Q psy12961 130 EVRSVF-HDEFLHTGGDEVDFYCWLNDPNIRQFLADRGWDGQQLQSYYTRRALA----IAKQLGFTSIVWQEVYENWRSE 204 (315)
Q Consensus 130 e~~~lF-~~~~iHiGgDEv~~~~w~~~~~~~~~~~~~g~~~~~l~~~f~~~~~~----~~~~~g~~~~~W~d~~~~~~~~ 204 (315)
.+..-| ...+++|-+||.... -|...+.++........+...+..++.+ .+.+.|+. ++.+-.+....
T Consensus 34 ~~~~~~~~~~~v~i~~D~~r~~----~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~~~n-ii~E~tl~~~~-- 106 (199)
T PF06414_consen 34 QLLEEFGGGGIVVIDADEFRQF----HPDYDELLKADPDEASELTQKEASRLAEKLIEYAIENRYN-IIFEGTLSNPS-- 106 (199)
T ss_dssp HHHHHT-TT-SEEE-GGGGGGG----STTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHCT---EEEE--TTSSH--
T ss_pred HhhhhccCCCeEEEehHHHHHh----ccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCC-EEEecCCCChh--
Confidence 333334 789999999998643 3555555554333444444444444444 44444553 33333332200
Q ss_pred CCCCCCCeEEEecCCCchhHHHHHHHcCCeEEE
Q psy12961 205 SRRMDPDTVVQVWYGNRNDLLNRITRDGYTAIT 237 (315)
Q Consensus 205 ~~~l~~~~iv~~W~~~~~~~~~~~~~~G~~~I~ 237 (315)
.....+..+.++||++.+
T Consensus 107 ---------------~~~~~~~~~k~~GY~v~l 124 (199)
T PF06414_consen 107 ---------------KLRKLIREAKAAGYKVEL 124 (199)
T ss_dssp ---------------HHHHHHHHHHCTT-EEEE
T ss_pred ---------------HHHHHHHHHHcCCceEEE
Confidence 011245667788999777
No 45
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=27.19 E-value=45 Score=31.48 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=25.4
Q ss_pred CCCcCCcccChhhHHHHHHhcccCccccceEEec
Q psy12961 4 SFHRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDP 37 (315)
Q Consensus 4 a~~~~~~~YT~~di~eiv~yA~~~~~~rgI~VIP 37 (315)
.+.|++..++.+++++|++.|++ +++-||-
T Consensus 157 p~nPtG~~~~~~~l~~l~~~~~~----~~~~ii~ 186 (363)
T PF00155_consen 157 PNNPTGSVLSLEELRELAELARE----YNIIIIV 186 (363)
T ss_dssp SBTTTTBB--HHHHHHHHHHHHH----TTSEEEE
T ss_pred cccccccccccccccchhhhhcc----cccceee
Confidence 46788889999999999999999 9999987
No 46
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=23.72 E-value=2.4e+02 Score=30.30 Aligned_cols=28 Identities=7% Similarity=0.133 Sum_probs=24.1
Q ss_pred ChhhHHHHHHhcccCccccceEEeccCCCCCccccc
Q psy12961 13 TIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHS 48 (315)
Q Consensus 13 T~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~ 48 (315)
+.+|+|++|+-|.+ +||+||= .+ ++ -|+
T Consensus 243 ~~~efk~LV~~~H~----~GI~VIl-Dv--V~-NHt 270 (688)
T TIGR02100 243 QVAEFKTMVRALHD----AGIEVIL-DV--VY-NHT 270 (688)
T ss_pred CHHHHHHHHHHHHH----CCCEEEE-EE--Cc-CCc
Confidence 57899999999999 9999999 44 34 788
No 47
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.94 E-value=47 Score=25.55 Aligned_cols=48 Identities=25% Similarity=0.429 Sum_probs=33.6
Q ss_pred CCeEEecCCCcccccccCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHc
Q psy12961 137 DEFLHTGGDEVDFYCWLNDPNIRQFLADRGWDGQQLQSYYTRRALAIAKQL 187 (315)
Q Consensus 137 ~~~iHiGgDEv~~~~w~~~~~~~~~~~~~g~~~~~l~~~f~~~~~~~~~~~ 187 (315)
+.+|-.|||.+..-|-...+++.+.|+=-|++...| +++|+.+.+.+-
T Consensus 26 d~fi~~GgDDvqQL~~~~e~eF~eim~lvGM~sKPL---HVrRlqKAL~ew 73 (82)
T PF04904_consen 26 DTFIAQGGDDVQQLCEAGEEEFLEIMALVGMASKPL---HVRRLQKALQEW 73 (82)
T ss_pred HHHHHHcChhHHHHHhcChHHHHHHHHHhCccCccH---HHHHHHHHHHHH
Confidence 567778999998777666788888888778743333 566666655543
No 48
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=22.74 E-value=3.6e+02 Score=28.89 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=20.3
Q ss_pred CcCCCChhHHHHHHHHHHHHHhhcC
Q psy12961 112 PIDPTKSSSYDFVRDLFTEVRSVFH 136 (315)
Q Consensus 112 ~l~~~~~~t~~fl~~ll~e~~~lF~ 136 (315)
++||.+|+|.+++.+-|++.++-+|
T Consensus 176 pfDvr~p~t~~~~~~~L~~wl~~hP 200 (716)
T PF09508_consen 176 PFDVRQPKTREYVLEWLRKWLEEHP 200 (716)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHT-T
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 6899999999999999999999887
No 49
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=22.60 E-value=53 Score=28.84 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=18.9
Q ss_pred HHHHHHHhhcCCCeEEecCCCccc
Q psy12961 126 DLFTEVRSVFHDEFLHTGGDEVDF 149 (315)
Q Consensus 126 ~ll~e~~~lF~~~~iHiGgDEv~~ 149 (315)
.|-+++.+.|+.+|+|+|.|.+..
T Consensus 16 sia~~Lq~~~~~p~~~l~~D~f~~ 39 (174)
T PF07931_consen 16 SIARALQERLPEPWLHLSVDTFVD 39 (174)
T ss_dssp HHHHHHHHHSSS-EEEEEHHHHHH
T ss_pred HHHHHHHHhCcCCeEEEecChHHh
Confidence 466777888999999999998643
No 50
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=22.22 E-value=50 Score=26.89 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=24.5
Q ss_pred ChhhHHHHHHhcccCccccceEEeccCCCCCcccccc
Q psy12961 13 TIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSL 49 (315)
Q Consensus 13 T~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~ 49 (315)
|.+|+++++++|++ +++.|.| -.- ||+.
T Consensus 9 s~~ev~~~v~~a~~----~~~~v~~----~g~-G~~~ 36 (139)
T PF01565_consen 9 SVEEVQAIVKFANE----NGVPVRV----RGG-GHSW 36 (139)
T ss_dssp SHHHHHHHHHHHHH----TTSEEEE----ESS-STTS
T ss_pred CHHHHHHHHHHHHH----cCCcEEE----EcC-CCCc
Confidence 78999999999999 9999999 444 8884
No 51
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=21.81 E-value=1.1e+02 Score=27.46 Aligned_cols=38 Identities=13% Similarity=0.400 Sum_probs=30.5
Q ss_pred CCcCCcccChhhHHHHHHhcccCccccceEEeccCCCCCccccc
Q psy12961 5 FHRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHS 48 (315)
Q Consensus 5 ~~~~~~~YT~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~ 48 (315)
||..+....-+|+.+.++-|++ +|+.|.-.-+.|+| |.
T Consensus 185 YS~~D~l~~~~~ve~~~~~~~~----~G~~V~~~~f~~S~--HV 222 (240)
T PF05705_consen 185 YSKADPLIPWRDVEEHAEEARR----KGWDVRAEKFEDSP--HV 222 (240)
T ss_pred cCCCCcCcCHHHHHHHHHHHHH----cCCeEEEecCCCCc--hh
Confidence 6777777888899999999999 99998883335676 77
No 52
>PLN02368 alanine transaminase
Probab=20.49 E-value=66 Score=31.88 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=25.2
Q ss_pred CcCCcccChhhHHHHHHhcccCccccceEEec
Q psy12961 6 HRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDP 37 (315)
Q Consensus 6 ~~~~~~YT~~di~eiv~yA~~~~~~rgI~VIP 37 (315)
.|++.+||++++++|++.|++ +++-||-
T Consensus 221 NPTG~v~s~e~l~~l~~~a~~----~~~~II~ 248 (407)
T PLN02368 221 NPTGQCLSEANLREILKFCYQ----ERLVLLG 248 (407)
T ss_pred CCCCccCCHHHHHHHHHHHHH----cCCEEEE
Confidence 367889999999999999999 9988886
No 53
>KOG1232|consensus
Probab=20.12 E-value=80 Score=31.63 Aligned_cols=40 Identities=23% Similarity=0.431 Sum_probs=35.4
Q ss_pred ChhhHHHHHHhcccCccccceEEeccCCCCCccccccccccccccccccc
Q psy12961 13 TIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERV 62 (315)
Q Consensus 13 T~~di~eiv~yA~~~~~~rgI~VIP~Ei~d~P~GH~~~~g~~a~~w~e~~ 62 (315)
|-+++..|++||.+ |-+.|+| .= |-+..+||--.+-.|.|
T Consensus 98 st~eVS~ILkYCn~----~kLAVVP-QG-----GNTgLVGgSVPvfDEiV 137 (511)
T KOG1232|consen 98 STEEVSAILKYCND----RKLAVVP-QG-----GNTGLVGGSVPVFDEIV 137 (511)
T ss_pred CHHHHHHHHHhhcc----ccEEEec-CC-----CCcccccCcccchHHHh
Confidence 67899999999999 9999999 55 88888999888888877
Done!