RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12961
(315 letters)
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer,
family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A*
2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Length = 507
Score = 239 bits (611), Expect = 1e-75
Identities = 111/319 (34%), Positives = 174/319 (54%), Gaps = 63/319 (19%)
Query: 1 NKGSFHRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEF--PGTPEQHSLVLGGEACIW 58
NKGS+ + VYT D++ +IEY R R+ P EF PG H+
Sbjct: 207 NKGSYSLSH-VYTPNDVRMVIEYARL----RGIRVLP-EFDTPG----HT---------- 246
Query: 59 GERVDESNVESRIWPRGAAIAERLWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKS 118
SWG G +LL + +GPI+PT +
Sbjct: 247 ------------------------LSWGKGQKDLLT----PCYSRQNKLDSFGPINPTLN 278
Query: 119 SSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGW--DGQQLQSYY 176
++Y F+ F E+ VF D+F+H GGDEV+F CW ++P I+ F+ +G+ D ++L+S+Y
Sbjct: 279 TTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFY 338
Query: 177 TRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRN-DLLNRITRDGYTA 235
++ L I + SIVWQEV+++ ++ P T+V+VW + + L+R+T G+
Sbjct: 339 IQKVLDIIATINKGSIVWQEVFDD----KAKLAPGTIVEVWKDSAYPEELSRVTASGFPV 394
Query: 236 ITSAGWYLDVLDIRDGYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESN 295
I SA WYLD++ + Q+W++YY+++P +F GT +Q L +GGEAC+WGE VD +N
Sbjct: 395 ILSAPWYLDLIS------YGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATN 448
Query: 296 VESRIWPRGAAIAERLWSN 314
+ R+WPR +A+ ERLWS+
Sbjct: 449 LTPRLWPRASAVGERLWSS 467
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A,
glycosidase, TAY-sachs disease, GM2 ganglisode, TIM
barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Length = 507
Score = 234 bits (599), Expect = 8e-74
Identities = 116/325 (35%), Positives = 169/325 (52%), Gaps = 71/325 (21%)
Query: 1 NKGSFHRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEF--PGTPEQHSLVLGGEACIW 58
KGS++ +YT +D+K +IEY R R+ EF PG H+
Sbjct: 201 RKGSYNPVTHIYTAQDVKEVIEYARL----RGIRVLA-EFDTPG----HT---------- 241
Query: 59 GERVDESNVESRIWPRGAAIAERLWSWGYGNPNLLCKINITIPDLNTTQEYWG---PIDP 115
SWG G P LL + E G P++P
Sbjct: 242 ------------------------LSWGPGIPGLLT-------PCYSGSEPSGTFGPVNP 270
Query: 116 TKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGW--DGQQLQ 173
+ +++Y+F+ F EV SVF D +LH GGDEVDF CW ++P I+ F+ +G+ D +QL+
Sbjct: 271 SLNNTYEFMSTFFLEVSSVFPDFYLHLGGDEVDFTCWKSNPEIQDFMRKKGFGEDFKQLE 330
Query: 174 SYYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYG----NRNDLLNRIT 229
S+Y + L I G +VWQEV++N ++ PDT++QVW N L +T
Sbjct: 331 SFYIQTLLDIVSSYGKGYVVWQEVFDN----KVKIQPDTIIQVWREDIPVNYMKELELVT 386
Query: 230 RDGYTAITSAGWYLDVLDIRDGYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGE 289
+ G+ A+ SA WYL+ + +W+ +Y ++P F GTPEQ +LV+GGEAC+WGE
Sbjct: 387 KAGFRALLSAPWYLNR------ISYGPDWKDFYVVEPLAFEGTPEQKALVIGGEACMWGE 440
Query: 290 RVDESNVESRIWPRGAAIAERLWSN 314
VD +N+ R+WPR A+AERLWSN
Sbjct: 441 YVDNTNLVPRLWPRAGAVAERLWSN 465
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase,
hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia
furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A*
Length = 572
Score = 215 bits (549), Expect = 8e-66
Identities = 78/334 (23%), Positives = 127/334 (38%), Gaps = 67/334 (20%)
Query: 1 NKGSFHRTKAVYTIEDIKSIIEYGWQQEWQRYYRIDPQEF--PGTPEQHSLVLGGEACIW 58
G+ + VYT I+ ++ +G + R R+ P EF P H
Sbjct: 243 KFGAL-SPQKVYTKAAIREVVRFGLE----RGVRVLP-EFDAPA----HVG--------- 283
Query: 59 GERVDESNVESRIWPRGAAIAERLWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKS 118
+C + G ++PTK
Sbjct: 284 -------------------------EGWQDTDLTVC-FKAEPWKSYCVEPPCGQLNPTKD 317
Query: 119 SSYDFVRDLFTEVRSVF-HDEFLHTGGDEVDFYCWLNDPNIRQFLADRGW-----DGQQL 172
Y ++ D+++++ VF + H GGDEV CW + +I+ F+ W +L
Sbjct: 318 ELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMMQNRWDLDKESFLKL 377
Query: 173 QSYYTRRALAIAKQL---GFTSIVWQEVYENWRSESRRMDP-DTVVQVWYGNRNDLLNRI 228
+Y+ ++A A + I+W N++ ++ D ++QVW + + +
Sbjct: 378 WNYFQQKAQDKAYKAFGKKLPLILWTSTLTNYKHIDDYLNKDDYIIQVWTTGVDPQIKGL 437
Query: 229 TRDGYTAITSAG--WYLDVL---DIRDGYGWQ---QEWQRYYRIDPQEFPGTPEQHSLVL 280
GY I S Y D + G W WQ+ Y P E VL
Sbjct: 438 LEKGYRLIMSNYDALYFDCGYGAWVGAGNNWCSPYIGWQKVYDNSP--AVIALEHRDQVL 495
Query: 281 GGEACIWGERVDESNVESRIWPRGAAIAERLWSN 314
GGEA +W E+ D S ++ R+WPR AA+AERLW+
Sbjct: 496 GGEAALWSEQSDTSTLDGRLWPRAAALAERLWAE 529
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Length = 543
Score = 196 bits (501), Expect = 6e-59
Identities = 70/317 (22%), Positives = 110/317 (34%), Gaps = 64/317 (20%)
Query: 11 VYTIEDIKSIIEYGWQQEWQRYYRIDPQ-EFPGTPEQHSLVLGGEACIWGERVDESNVES 69
YT +D++ I+ + R+ + P+ + PG HS
Sbjct: 220 FYTQDDLREIVAFAAD----RHITVIPEIDVPG----HSQ-------------------- 251
Query: 70 RIWPRGAAIAERLWSWGYGNPNLLCKINITIPDLNTTQEYWG---PIDPTKSSSYDFVRD 126
AAIA Y P L + WG + +S +F R+
Sbjct: 252 ------AAIA------AY--PELGAGPADGSSPVEV-WTRWGINETVLEVSETSLEFYRN 296
Query: 127 LFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGW-DGQQLQSYYTRRALAIAK 185
+ EV +F ++ GGDEV W + A+ G D L S++ + K
Sbjct: 297 VLDEVVEIFPSPWISLGGDEVPLTQWQASAQAQAKAAELGLDDVSGLHSWFVGQLALHLK 356
Query: 186 QLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNRITRDGYTAITSAG--WYL 243
G + VW E+ + + +V W G + R GY + YL
Sbjct: 357 HHGRATSVWDEIGDG------GLPDGALVASWRG--YEGGIDALRKGYDVVMCPEHKLYL 408
Query: 244 DVL-----DIRDGYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERV-DESNVE 297
D D G+ Q Y +P + +LG +A IW E + V+
Sbjct: 409 DHRQADGDDEPVPVGFVTTLQAVYEFEPLPGVEGTDFPGRLLGAQANIWSEHLDSPRRVQ 468
Query: 298 SRIWPRGAAIAERLWSN 314
+PR +AI+E WSN
Sbjct: 469 FAAFPRLSAISEVFWSN 485
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase,
glycosphingolipids, paenibacill GH20, hydrolase,
structural genomics, NPPSFA; HET: NAG; 1.60A
{Paenibacillus SP} PDB: 3gh4_A* 3gh7_A*
Length = 525
Score = 166 bits (422), Expect = 1e-47
Identities = 63/326 (19%), Positives = 106/326 (32%), Gaps = 85/326 (26%)
Query: 1 NKGSFHRTKA----VYTIEDIKSIIEYGWQQEWQRYYRIDPQ-EFPGTPEQHSLVLGGEA 55
GS + YT E K I+ Y + RY + P+ + PG H+
Sbjct: 238 EIGSKGQVGGGPGGYYTQEQFKDIVSYAAE----RYIEVIPEIDMPG----HT------- 282
Query: 56 CIWGERVDESNVESRIWPRGAAIAERLWSWGYGNPNLLCKINITIPDLNTTQEY-WGPID 114
AA+A Y L + + T + +
Sbjct: 283 -------------------NAALA------SY--GELNP--DGKRKAMRTDTAVGYSTLM 313
Query: 115 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGWDGQQLQS 174
P +Y FV D+ +E+ ++ ++H GGDE +
Sbjct: 314 PRAEITYQFVEDVISELAAISPSPYIHLGGDESNATSA------------------ADYD 355
Query: 175 YYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNRITRDGYT 234
Y+ R AIA G + W + D+V+Q W + G
Sbjct: 356 YFFGRVTAIANSYGKKVVGWDPSDTSS-----GATSDSVLQNWTCS-ASTGTAAKAKGMK 409
Query: 235 AI-TSAGWYLD---VLDIRDGYGWQ--QEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWG 288
I + A YLD D G W+ R Y D P + + + G E+ +W
Sbjct: 410 VIVSPANAYLDMKYYSDSPIGLQWRGFVNTNRAYNWD----PTDCIKGANIYGVESTLWT 465
Query: 289 ERV-DESNVESRIWPRGAAIAERLWS 313
E + +++ ++P+ + AE W+
Sbjct: 466 ETFVTQDHLDYMLYPKLLSNAEVGWT 491
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20,
substrate-assisted catalysis, alpha/beta barrel,
isofagomin inhibitor complex; HET: IFG; 1.75A
{Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB:
1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Length = 512
Score = 154 bits (391), Expect = 2e-43
Identities = 71/332 (21%), Positives = 106/332 (31%), Gaps = 88/332 (26%)
Query: 2 KGSFHRTKA----VYTIEDIKSIIEYGWQQEWQRYYRIDPQ-EFPGTPEQHSLVLGGEAC 56
G YT + K I+ Y R+ + P+ + PG H+
Sbjct: 214 YGGSTEVGGGPGGYYTKAEYKEIVRYAAS----RHLEVVPEIDMPG----HT-------- 257
Query: 57 IWGERVDESNVESRIWPRGAAIAERLWSWGYGNPNLLCKINITIPDLNTTQEY-WGPIDP 115
AA+A Y L C + P L T + + +
Sbjct: 258 ------------------NAALA------SY--AELNC--DGVAPPLYTGTKVGFSSLCV 289
Query: 116 TKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGWDGQQLQSY 175
K +YDFV D+ E+ ++ +LH GGDE
Sbjct: 290 DKDVTYDFVDDVIGELAALTPGRYLHIGGDEAHSTPK------------------ADFVA 331
Query: 176 YTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNR-----NDLLNRITR 230
+ +R I + G T + W ++ +VQ W +R + R
Sbjct: 332 FMKRVQPIVAKYGKTVVGWHQLAGA------EPVEGALVQYWGLDRTGDAEKAEVAEAAR 385
Query: 231 DGYTAITSAG--WYLD---VLDIRDGYGWQ--QEWQRYYRIDPQEFPGTPEQHSLVLGGE 283
+G I S YLD D G W E QR Y DP + V G E
Sbjct: 386 NGTGLILSPADRTYLDMKYTKDTPLGLSWAGYVEVQRSYDWDPAGYL-PGAPADAVRGVE 444
Query: 284 ACIWGERV-DESNVESRIWPRGAAIAERLWSN 314
A +W E + D ++ +PR +AE WS
Sbjct: 445 APLWTETLSDPDQLDYMAFPRLPGVAELGWSP 476
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter
actinomycetemcomitans} SCOP: c.1.8.6
Length = 367
Score = 149 bits (378), Expect = 1e-42
Identities = 42/335 (12%), Positives = 89/335 (26%), Gaps = 96/335 (28%)
Query: 11 VYTIEDIKSIIEYGWQQEWQRYYRIDPQEF--PGTPEQHSLVLGGEACIWGERVDESNVE 68
+ + I Y + + P E P H
Sbjct: 91 FLSYRQLDDIKAYAKA----KGIELIP-ELDSPN----HMT------------------- 122
Query: 69 SRIWPRGAAIAERLWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLF 128
+ +++ ID T + S F++ L
Sbjct: 123 ---------------AIFKLVQKDRGV---KYLQGLKSRQVDDEIDITNADSITFMQSLM 164
Query: 129 TEVRSVFHD--EFLHTGGDEVDFYCWLNDPNIRQFLADRGWDGQQLQSYYTRRALAIAKQ 186
+EV +F D + H GGDE + N I Y + ++
Sbjct: 165 SEVIDIFGDTSQHFHIGGDEFGYSVESNHEFI----------------TYANKLSYFLEK 208
Query: 187 LGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRN--------------DLLNRITRDG 232
G + +W + ++ +++P+ + W + + L + G
Sbjct: 209 KGLKTRMWNDGLI--KNTFEQINPNIEITYWSYDGDTQDKNEAAERRDMRVSLPELLAKG 266
Query: 233 YTAITSAGWYLDVLDIRDGYGWQQE-----WQRYYRIDPQEFPG-----TPEQHSLVLGG 282
+T + +YL + + + Q+ D + G + + G
Sbjct: 267 FTVLNYNSYYLY-IVPKASPTFSQDAAFAAKDVIKNWDLGVWDGRNTKNRVQNTHEIAGA 325
Query: 283 EACIWGERVD---ESNVESRIWPRGAAIAERLWSN 314
IWGE + ++ A+ + +
Sbjct: 326 ALSIWGEDAKALKDETIQKNTKSLLEAVIHKTNGD 360
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus
pneumoniae} PDB: 2yla_A* 2yl9_A*
Length = 442
Score = 142 bits (360), Expect = 2e-39
Identities = 36/236 (15%), Positives = 72/236 (30%), Gaps = 19/236 (8%)
Query: 90 PNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVF--HDEFLHTGGDEV 147
L P + + +D + +FV+ L + F + + G DE
Sbjct: 129 EKLGI----KNPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFGTDEY 184
Query: 148 DFYCWLNDPNIRQFLADRGWDGQQLQSYYTRRALAIAKQLGFTSIVWQEVYENWRSESRR 207
+ + + Y A+AK+ G + + + + + +
Sbjct: 185 ANDATSAQGWYY----LKWYQLYGKFAEYANTLAAMAKERGLQPMAFNDGFYYEDKDDVQ 240
Query: 208 MDPDTVVQVW----YGNRNDLLNRITRDGYTAITSAGW--YLDVLDIRD-GYGWQQEWQR 260
D D ++ W +G + GY + + G Y+ D G ++ +
Sbjct: 241 FDKDVLISYWSKGWWGYNLASPQYLASKGYKFLNTNGDWYYILGQKPEDGGGFLKKAIEN 300
Query: 261 YYRIDPQEFPGT--PEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSN 314
+ + T PE +G IW +R E I+ A A+
Sbjct: 301 TGKTPFNQLASTKYPEVDLPTVGSMLSIWADRPSAEYKEEEIFELMTAFADHNKDY 356
Score = 66.1 bits (161), Expect = 2e-12
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 23 YGWQQEWQRYYRIDPQEFPGT--PEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAE 80
++ + + + T PE +G IW +R E I+ A A+
Sbjct: 292 GFLKKAIENTGKTPFNQLASTKYPEVDLPTVGSMLSIWADRPSAEYKEEEIFELMTAFAD 351
Query: 81 RLWSWGYGN 89
+ N
Sbjct: 352 HNKDYFRAN 360
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET:
ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A*
2yl8_A* 3rpm_A*
Length = 434
Score = 140 bits (353), Expect = 2e-38
Identities = 46/323 (14%), Positives = 82/323 (25%), Gaps = 67/323 (20%)
Query: 12 YTIEDIKSIIEYGWQQEWQRYYRIDPQ-EFPGTPEQHSLVLGGEACIWGERVDESNVESR 70
T + +I Y + + P PG H
Sbjct: 89 LTESQMTDLINYAKD----KGIGLIPTVNSPG----HMD--------------------- 119
Query: 71 IWPRGAAIAERLWSWGYGNPNLLCKINITIPDLNTTQEYW-GPIDPTKSSSYDFVRDLFT 129
A + L P+ + + +D + F + L
Sbjct: 120 -----AILN--------AMKELGI----QNPNFSYFGKKSARTVDLDNEQAVAFTKALID 162
Query: 130 EVRSVFHD--EFLHTGGDEV-----DFYCWLNDPNIRQFLADRGW-DGQQLQSYYTRRAL 181
+ + F E + G DE D W + + + G + Y
Sbjct: 163 KYAAYFAKKTEIFNIGLDEYANDATDAKGWSVLQADKYYPNEGYPVKGYEKFIAYANDLA 222
Query: 182 AIAKQLGFTSIVWQEVYENWRSESR-RMDPDTVVQVWYGN----RNDLLNRITRDGYTAI 236
I K G + + + S D D +V +W G + G+ +
Sbjct: 223 RIVKSHGLKPMAFNDGIYYNSDTSFGSFDKDIIVSMWTGGWGGYDVASSKLLAEKGHQIL 282
Query: 237 TSAG--WYLDVL--DIRDGYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVD 292
+ +Y+ D + Y Q P T ++GG W +
Sbjct: 283 NTNDAWYYVLGRNADGQGWYNLDQGLNGIKNTPITSVPKTEGADIPIIGGMVAAWADTPS 342
Query: 293 ESNVESRIWP--RGAAIAERLWS 313
SR++ R A A +
Sbjct: 343 ARYSPSRLFKLMRHFANANAEYF 365
Score = 58.0 bits (140), Expect = 1e-09
Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Query: 23 YGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWP--RGAAIAE 80
Y Q P T ++GG W + SR++ R A A
Sbjct: 302 YNLDQGLNGIKNTPITSVPKTEGADIPIIGGMVAAWADTPSARYSPSRLFKLMRHFANAN 361
Query: 81 RLWSW 85
+
Sbjct: 362 AEYFA 366
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis,
A/B(TIM)-barrel, site directed mutagenesis; HET: CBS;
1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3
c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Length = 858
Score = 117 bits (293), Expect = 2e-29
Identities = 56/366 (15%), Positives = 99/366 (27%), Gaps = 87/366 (23%)
Query: 12 YTIEDIKSIIEYGWQQEWQRYYRIDPQ-EFPGTPEQHSLVLGGEACIWGERVDESNVESR 70
++ +D II+Y R + P+ + P + + E
Sbjct: 397 FSRQDYIDIIKYA----QARQIEVIPEIDMPAHARAAVVSMEARYKKLHAAGKEQEANEF 452
Query: 71 IWPRGAAIAERLWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTE 130
+ + + L P SS FV + E
Sbjct: 453 RLVDQTDTSNTTSVQFFNRQSYLN--------------------PCLDSSQRFVDKVIGE 492
Query: 131 VRSVFHD-----EFLHTGGDEV--------------------------DFYCWLNDPNIR 159
+ + + + H GG E + W +
Sbjct: 493 IAQMHKEAGQPIKTWHFGGAEAKNIRLGAGYTDKAKPEPGKGIIDQSNEDKPWAKSQVCQ 552
Query: 160 QFLADRG-WDGQQLQSYYTRRALAIAKQLGFTSIV-WQEVYENWRSESRRMDPDTVVQVW 217
+ + D + L SY+ + + K G + WQ+ ++ S V W
Sbjct: 553 TMIKEGKVADMEHLPSYFGQEVSKLVKAHGIDRMQAWQDGLKDAESSKAFATSRVGVNFW 612
Query: 218 ---YGNRNDLLNRITRDGYTAITSAGW--YLD-----------------VLDIRDGYGWQ 255
Y D +N GY + S Y+D D R + +
Sbjct: 613 DTLYWGGFDSVNDWANKGYEVVVSNPDYVYMDFPYEVNPDERGYYWGTRFSDERKVFSFA 672
Query: 256 -----QEWQRYYRIDPQEFPG-TPEQHSLVLGGEACIWGERV-DESNVESRIWPRGAAIA 308
Q + D F + + G A +W E + +E I+PR ++A
Sbjct: 673 PDNMPQNAETSVDRDGNHFNAKSDKPWPGAYGLSAQLWSETQRTDPQMEYMIFPRALSVA 732
Query: 309 ERLWSN 314
ER W
Sbjct: 733 ERSWHR 738
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20,
GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X
2epm_X 2epn_A* 2epo_A
Length = 627
Score = 91.2 bits (226), Expect = 1e-20
Identities = 33/218 (15%), Positives = 64/218 (29%), Gaps = 25/218 (11%)
Query: 113 IDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGW-DGQQ 171
+ + YD + +F + + H ++ G DE ++L G+ +
Sbjct: 192 LLIGEEKVYDLIEGMFQTM-AHLHTRKINIGMDEAHLVGL------GRYLIKHGFQNRSL 244
Query: 172 LQSYYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNRIT-- 229
L + R L IA + GF +W +++ S + D D + D L
Sbjct: 245 LMCQHLERVLDIADKYGFNCQMWSDMFFKLMSADGQYDRDVEIPEETRVYLDRLKERVTL 304
Query: 230 -RDGYTAITSAGWYLDVLDIRDGYGWQ-------QEWQRYY-----RIDPQEFPGTPEQH 276
Y + Y +W + +
Sbjct: 305 VYWDYYQDSEEK-YNRNFQNHHKISQDIAFAGGAWKWIGFTPHNHFSRLVAIEANKACRK 363
Query: 277 SLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSN 314
+ V WG+ E++ + + P AE + N
Sbjct: 364 NQVKEVIVTGWGDNGGETS-QFSVLPALQIWAELAYRN 400
Score = 38.4 bits (89), Expect = 0.003
Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 6/66 (9%)
Query: 24 GWQQEWQRYY-----RIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAI 78
G +W + + + V WG+ E++ + + P
Sbjct: 335 GGAWKWIGFTPHNHFSRLVAIEANKACRKNQVKEVIVTGWGDNGGETS-QFSVLPALQIW 393
Query: 79 AERLWS 84
AE +
Sbjct: 394 AELAYR 399
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 1e-04
Identities = 35/184 (19%), Positives = 58/184 (31%), Gaps = 63/184 (34%)
Query: 37 PQEFPGTPEQHSLVLGG--EACIWGERVDESNVESRIW---PRGAAIAERLWSW--GYGN 89
QE T + ++ A I +R + S ++ G A +L + G GN
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA---QLVAIFGGQGN 165
Query: 90 PNLLCKINITIPDLNTTQEYWGPIDPTKSSSY-DFVRDLFTE--------VRSVFHDEFL 140
+ +L ++ + +Y V DL +R+ E +
Sbjct: 166 ------TDDYFEEL---RDLY--------QTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 141 HTGGDEVDFYCWLNDPNIR---QFLADRGWDGQ-----------QLQSYYTRRALAIAKQ 186
T G ++ WL +P+ +L QL Y AK
Sbjct: 209 FTQG--LNILEWLENPSNTPDKDYLL------SIPISCPLIGVIQLAHYV-----VTAKL 255
Query: 187 LGFT 190
LGFT
Sbjct: 256 LGFT 259
Score = 36.6 bits (84), Expect = 0.012
Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 50/161 (31%)
Query: 125 RDLFTEVRSVFHDEFL------HTGGDEVDFYCWLND--PNIRQFLADRG--WDGQQLQS 174
R F+E + F + FL H+ L I + L ++ + +Q
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSH--------LLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 175 --YYTR-----RALA--IAKQLGFTSIVWQEVYENWRSESRR-------MDPDTVVQVWY 218
Y T R L+ I++++ I+ V W + ++ P +
Sbjct: 458 PVYDTFDGSDLRVLSGSISERI-VDCIIRLPV--KWETTTQFKATHILDFGPGGASGL-- 512
Query: 219 GNRNDLLNRITRDGY-TAITSAGWYLDVLDIR--DGYGWQQ 256
L +R +DG + AG LDI D YG++Q
Sbjct: 513 ---GVLTHRN-KDGTGVRVIVAG----TLDINPDDDYGFKQ 545
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces
sioyaensis}
Length = 280
Score = 32.1 bits (73), Expect = 0.20
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 134 VFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGWDGQQLQSYYTRRALAIAKQLGFTSIV 193
VF D+F G V+ W D W +++S + + G I
Sbjct: 12 VFLDDFDGAAGSSVNTANWQFDTGTSYPGGAGNWGTGEVESMTSSTSNVSLDGNGDLLIT 71
Query: 194 -WQEVYENWRS 203
++ NW S
Sbjct: 72 PRRDASGNWTS 82
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 0.48
Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 42/162 (25%)
Query: 59 GERVDESNVESRIWPRGAAIAERLWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKS 118
E VD+ +V+++ +I E I + P+L + +P K
Sbjct: 882 KEPVDDKDVKAKY---ETSILEH------------SGIRLIEPEL------FNGYNPEKK 920
Query: 119 SSYDFV---RDL-FTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGWDGQQLQ- 173
V DL E ++F H GD+VD + P ++ + G L
Sbjct: 921 EMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIF---EIPETGEYSV-KLLKGATLYI 976
Query: 174 ---SYYTRRALAIAKQL--GFTSIVWQEVYENWRSESRRMDP 210
+ R +A Q+ G+ + + Y ++DP
Sbjct: 977 PKALRFDRL---VAGQIPTGWNA----KTYGISDDIISQVDP 1011
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 30.0 bits (68), Expect = 0.67
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 38/122 (31%)
Query: 123 FVRDLFTEVRSVFHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ----- 171
FV D F F+ T G +DF +N ++ Q WD GQ+
Sbjct: 40 FVEDKFNP-------SFITTIG--IDFKIKTVDINGKKVKLQL-----WDTAGQERFRTI 85
Query: 172 LQSYYTRRALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLL 225
+YY R A+ + + FT+I + W D + GN++D+
Sbjct: 86 TTAYY-RGAMGIILVYDVTDERTFTNI------KQWFKTVNEHANDEAQLLLVGNKSDME 138
Query: 226 NR 227
R
Sbjct: 139 TR 140
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 30.0 bits (68), Expect = 0.85
Identities = 26/122 (21%), Positives = 40/122 (32%), Gaps = 38/122 (31%)
Query: 123 FVRDLFTEVRSVFHDEFLHTGGDEVDFY---CWLNDPNIR-QFLADRGWD--GQQ----- 171
F+ D F + T G +DF +L D +R Q WD G +
Sbjct: 36 FMYDSFDN-------TYQATIG--IDFLSKTMYLEDRTVRLQL-----WDTAGLERFRSL 81
Query: 172 LQSYYTRRALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLL 225
+ SY R + I F W + R V+ + GN+ DL
Sbjct: 82 IPSYI-RDSTVAVVVYDITNVNSFQQT------TKWIDDVRTERGSDVIIMLVGNKTDLA 134
Query: 226 NR 227
++
Sbjct: 135 DK 136
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase,
bacterial cell WALL, carbohydrate esterase; 1.7A
{Bacillus anthracis} SCOP: c.6.2.3
Length = 247
Score = 30.0 bits (68), Expect = 0.95
Identities = 8/40 (20%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 176 YTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQ 215
++ R LA+ K++G+ ++ W + +W+ + +R
Sbjct: 158 FSERTLALTKEMGYYNVFWSLAFLDWKVDEQR-GWQYAHN 196
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 29.1 bits (66), Expect = 1.5
Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 38/122 (31%)
Query: 123 FVRDLFTEVRSVFHDEFLHTGGDEVDFY---CWLNDPNIR-QFLADRGWD--GQQ----- 171
F+ D F + T G +DF +L D +R Q WD GQ+
Sbjct: 34 FMYDSFDN-------TYQATIG--IDFLSKTMYLEDRTVRLQL-----WDTAGQERFRSL 79
Query: 172 LQSYYTRRALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLL 225
+ SY R + I F W + R V+ + GN+ DL
Sbjct: 80 IPSYI-RDSTVAVVVYDITNTNSFHQT------SKWIDDVRTERGSDVIIMLVGNKTDLS 132
Query: 226 NR 227
++
Sbjct: 133 DK 134
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 28.7 bits (65), Expect = 1.6
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 31/110 (28%)
Query: 135 FHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ-----LQSYYTRRALA- 182
F+ F+ T G +DF +N ++ Q WD GQ+ +YY R A+
Sbjct: 28 FNPSFITTIG--IDFKIKTVDINGKKVKLQI-----WDTAGQERFRTITTAYY-RGAMGI 79
Query: 183 -----IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNR 227
I + FT+I + W D + GN++D+ R
Sbjct: 80 ILVYDITDERTFTNI------KQWFKTVNEHANDEAQLLLVGNKSDMETR 123
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium; 1.80A {Bacillus subtilis} SCOP:
c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Length = 240
Score = 28.8 bits (65), Expect = 2.1
Identities = 6/40 (15%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 176 YTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQ 215
++ L K+LG+ ++ W + +W+ +++
Sbjct: 146 FSEYVLKETKRLGYQTVFWSVAFVDWKINNQK-GKKYAYD 184
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 28.4 bits (64), Expect = 2.3
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 30/110 (27%)
Query: 135 FHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ-----LQSYYTRRALA- 182
F + T G + + I+ WD GQ+ YY A
Sbjct: 36 FEKNYNATVGAV-NHPVTFLDDQGNVIKFNV-----WDTAGQEKKAVLKDVYY-IGASGA 88
Query: 183 -----IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNR 227
+ ++ ++ W E + + + V N+ D+ NR
Sbjct: 89 ILFFDVTSRITCQNL------ARWVKEFQAVVGNEAPIVVCANKIDIKNR 132
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 28.3 bits (64), Expect = 2.4
Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 38/122 (31%)
Query: 123 FVRDLFTEVRSVFHDEFLHTGGDEVDFY---CWLNDPNIR-QFLADRGWD--GQQ----- 171
FV+D F T G F + + WD GQ+
Sbjct: 43 FVQDHFDH-------NISPTIG--ASFMTKTVPCGNELHKFLI-----WDTAGQERFHSL 88
Query: 172 LQSYYTRRALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLL 225
YY R + A I KQ F ++ + W E + P+ +V GN+ DL
Sbjct: 89 APMYY-RGSAAAVIVYDITKQDSFYTL------KKWVKELKEHGPENIVMAIAGNKCDLS 141
Query: 226 NR 227
+
Sbjct: 142 DI 143
>1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase,
alpha-amylase FAMI acarbose, transferase; HET: ACR;
1.90A {Thermus aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A*
1fp8_A 1fp9_A 2owc_A* 2oww_A* 2owx_A* 2x1i_A*
Length = 500
Score = 28.8 bits (65), Expect = 2.5
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 8/31 (25%)
Query: 145 DEVDFYCWLNDPNIRQFLADRGWDGQQLQSY 175
+EV F+ + Q+L R W L++
Sbjct: 180 EEVAFHAFT------QWLFFRQW--GALKAE 202
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 28.2 bits (64), Expect = 2.7
Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 31/114 (27%)
Query: 131 VRSVFHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ-----LQSYYTRR 179
+ F+D+ + T G F + + WD GQ+ YY R
Sbjct: 27 CENKFNDKHITTLG--ASFLTKKLNIGGKRVNLAI-----WDTAGQERFHALGPIYY-RD 78
Query: 180 ALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNR 227
+ I + F + +NW E R+M + + GN+ DL
Sbjct: 79 SNGAILVYDITDEDSFQKV------KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 27.8 bits (63), Expect = 2.9
Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 38/122 (31%)
Query: 123 FVRDLFTEVRSVFHDEFLHTGGDEVDFY---CWLNDPNIR-QFLADRGWD--GQQ----- 171
FV D F T G F + + WD G +
Sbjct: 26 FVEDSFDP-------NINPTIG--ASFMTKTVQYQNELHKFLI-----WDTAGLERFRAL 71
Query: 172 LQSYYTRRALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLL 225
YY R + A I K+ F+++ +NW E R+ P ++V GN+ DL
Sbjct: 72 APMYY-RGSAAAIIVYDITKEETFSTL------KNWVRELRQHGPPSIVVAIAGNKCDLT 124
Query: 226 NR 227
+
Sbjct: 125 DV 126
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 2.9
Identities = 16/120 (13%), Positives = 39/120 (32%), Gaps = 41/120 (34%)
Query: 122 DFVRDL-FTEV----RSVFH----DEFLHTGGDEVD----FYCWLNDPN--IRQFLADRG 166
FV + +V +S+ D + + F+ L+ +++F+ +
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-- 85
Query: 167 WDGQQLQSYYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLN 226
L+ Y + + ++E R P + +++ R+ L N
Sbjct: 86 ----VLRINYK----------------F--LMSPIKTEQR--QPSMMTRMYIEQRDRLYN 121
Score = 28.3 bits (62), Expect = 3.9
Identities = 33/176 (18%), Positives = 52/176 (29%), Gaps = 39/176 (22%)
Query: 88 GNPNLLCKINITIPDLNTTQEYWGPIDPTK-----SSSYDF-----VRDLFTEVRSVFHD 137
NP L I +I D T + W ++ K SS + R +F + SVF
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPP 383
Query: 138 EFLHTGGDEVDFYCWLNDPNIRQFLADRGWDGQQLQSYYTRRALAIAKQLGFTSIVWQEV 197
+I L W + + +L S+V
Sbjct: 384 -----------------SAHIPTILLSLIW--FDVIKSDVMV---VVNKLHKYSLV---- 417
Query: 198 YENWRSESRRMDPDTVVQVWYGNRNDL-LNRITRDGYTAITSAGWYLDVLDIRDGY 252
E ES P +++ N+ L+R D Y + + D Y
Sbjct: 418 -EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 28.0 bits (63), Expect = 3.0
Identities = 31/119 (26%), Positives = 42/119 (35%), Gaps = 38/119 (31%)
Query: 123 FVRDLFTEVRSVFHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ----- 171
F + LF T G VDF +N ++ Q WD GQ+
Sbjct: 46 FTQGLFPP-------GQGATIG--VDFMIKTVEINGEKVKLQI-----WDTAGQERFRSI 91
Query: 172 LQSYYTRRALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDL 224
QSYY R A A I + F + W E + + V+ V GN+ DL
Sbjct: 92 TQSYY-RSANALILTYDITCEESFRCL------PEWLREIEQYASNKVITVLVGNKIDL 143
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 28.0 bits (63), Expect = 3.2
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 31/107 (28%)
Query: 135 FHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ-----LQSYYTRRALA- 182
+ ++++ T G VDF L+ ++ Q WD GQ+ SYY R +
Sbjct: 33 YTNDYISTIG--VDFKIKTVELDGKTVKLQI-----WDTAGQERFRTITSSYY-RGSHGI 84
Query: 183 -----IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDL 224
+ Q F + + W E R TV+++ GN+ DL
Sbjct: 85 IIVYDVTDQESFNGV------KMWLQEIDRYATSTVLKLLVGNKCDL 125
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 28.0 bits (63), Expect = 3.2
Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 38/119 (31%)
Query: 123 FVRDLFTEVRSVFHDEFLHTGGDEVDFYC---WLNDPNIR-QFLADRGWD--GQQ----- 171
F F+E T G VDF + ++ Q WD GQ+
Sbjct: 49 FKTGAFSE-------RQGSTIG--VDFTMKTLEIQGKRVKLQI-----WDTAGQERFRTI 94
Query: 172 LQSYYTRRALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDL 224
QSYY R A I K+ F S+ +W + R+ +VQ+ GN++DL
Sbjct: 95 TQSYY-RSANGAILAYDITKRSSFLSV------PHWIEDVRKYAGSNIVQLLIGNKSDL 146
>1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex
aeolicus} SCOP: c.1.8.1
Length = 505
Score = 28.4 bits (64), Expect = 3.4
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 8/31 (25%)
Query: 145 DEVDFYCWLNDPNIRQFLADRGWDGQQLQSY 175
F+ ++ QF+ + W ++L+ Y
Sbjct: 193 GRFYFHVFV------QFVFFKQW--EKLRRY 215
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 28.0 bits (63), Expect = 3.4
Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 31/120 (25%)
Query: 135 FHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ-----LQSYYTRRALA- 182
F + T G VDF ++ Q WD GQ+ +SY+ R+A
Sbjct: 53 FRENISATLG--VDFQMKTLIVDGERTVLQL-----WDTAGQERFRSIAKSYF-RKADGV 104
Query: 183 -----IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNRITRDGYTAIT 237
+ + F +I W +TV + GN+ D+ + +G +
Sbjct: 105 LLLYDVTCEKSFLNI------REWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVP 158
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 27.9 bits (63), Expect = 3.5
Identities = 30/122 (24%), Positives = 42/122 (34%), Gaps = 38/122 (31%)
Query: 123 FVRDLFTEVRSVFHDEFLHTGGDEVDFY---CWLNDPNIR-QFLADRGWD--GQQ----- 171
FV+ F E T G F L+D ++ + WD GQ+
Sbjct: 26 FVKGQFHE-------FQESTIG--AAFLTQTVCLDDTTVKFEI-----WDTAGQERYHSL 71
Query: 172 LQSYYTRRALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLL 225
YY R A A I + F +NW E +R +V GN+ DL
Sbjct: 72 APMYY-RGAQAAIVVYDITNEESFARA------KNWVKELQRQASPNIVIALSGNKADLA 124
Query: 226 NR 227
N+
Sbjct: 125 NK 126
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 28.0 bits (63), Expect = 3.5
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 38/122 (31%)
Query: 123 FVRDLFTEVRSVFHDEFLHTGGDEVDFYC---WLNDPNIR-QFLADRGWD--GQQ----- 171
F R+ F E T G V+F ++ I+ Q WD GQ+
Sbjct: 25 FTRNEFNL-------ESKSTIG--VEFATRSIQVDGKTIKAQI-----WDTAGQERYRRI 70
Query: 172 LQSYYTRRALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLL 225
+YY R A+ IAK L + ++ E W E R +V + GN++DL
Sbjct: 71 TSAYY-RGAVGALLVYDIAKHLTYENV------ERWLKELRDHADSNIVIMLVGNKSDLR 123
Query: 226 NR 227
+
Sbjct: 124 HL 125
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 28.0 bits (63), Expect = 3.6
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 38/122 (31%)
Query: 123 FVRDLFTEVRSVFHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ----- 171
+ D FT F+ T G +DF + +D I+ Q WD GQ+
Sbjct: 42 YADDSFTP-------AFVSTVG--IDFKVKTVYRHDKRIKLQI-----WDTAGQERYRTI 87
Query: 172 LQSYYTRRALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLL 225
+YY R A+ IA Q F ++ ++W ++ + D + GN+ DL
Sbjct: 88 TTAYY-RGAMGFLLMYDIANQESFAAV------QDWATQIKTYSWDNAQVILVGNKCDLE 140
Query: 226 NR 227
+
Sbjct: 141 DE 142
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 27.5 bits (61), Expect = 4.0
Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 17/103 (16%)
Query: 131 VRSVFHDEFLHTGGDEVDFY---CWLNDPNIR-QFLADRGWD--GQQ----LQSYYTRRA 180
V + F + T G F +N+ ++ + WD GQ+ L Y R A
Sbjct: 24 VSNDFAENKEPTIG--AAFLTQRVTINEHTVKFEI-----WDTAGQERFASLAPXYYRNA 76
Query: 181 LAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRND 223
A T +W E ++ GN+ D
Sbjct: 77 QAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID 119
>3eby_A Beta subunit of A putative aromatic-ring-hydroxyl dioxygenase;
YP_001165631.1; 1.75A {Novosphingobium aromaticivorans
dsm 12ORGANISM_TAXID} SCOP: d.17.4.4
Length = 163
Score = 27.3 bits (60), Expect = 4.5
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 224 LLNRITRDGYTAITSAGWYLDVLDIRDGYGWQ 255
++ + DG T I +AG Y+D D+ G +
Sbjct: 112 VVFQTRNDGETRIYNAGKYVDRFDLSGG-TVR 142
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 27.5 bits (62), Expect = 4.8
Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 38/122 (31%)
Query: 123 FVRDLFTEVRSVFHDEFLHTGGDEVDFY---CWLNDPNIR-QFLADRGWD--GQQ----- 171
FV+D F E T G F+ +ND ++ + WD GQ+
Sbjct: 32 FVKDQFVE-------FQESTIG--AAFFSQTLAVNDATVKFEI-----WDTAGQERYHSL 77
Query: 172 LQSYYTRRALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLL 225
YY R A A + Q F + W E + +V GN++DLL
Sbjct: 78 APMYY-RGAAAAIIVFDVTNQASFERA------KKWVQELQAQGNPNMVMALAGNKSDLL 130
Query: 226 NR 227
+
Sbjct: 131 DA 132
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP:
c.94.1.1
Length = 310
Score = 27.7 bits (61), Expect = 4.9
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 119 SSYDFVRDLFTEVRSVFHDEFLHTGGDEVDF 149
SYD R+L+ + F + GD V
Sbjct: 8 VSYDPTRELYEQYNKAFSAHWKQETGDNVVI 38
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 27.2 bits (61), Expect = 5.1
Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 42/126 (33%)
Query: 123 FVRDLFTEVRSVFHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ----- 171
+V F+ ++ T G DF ++D + Q WD GQ+
Sbjct: 28 YVNKKFSN-------QYKATIG--ADFLTKEVMVDDRLVTMQI-----WDTAGQERFQSL 73
Query: 172 LQSYYTRRALA------IAKQLGFTSIVWQEVYENWRSESRR----MDPDTVVQVWYGNR 221
++Y R A + F ++ ++WR E DP+ V GN+
Sbjct: 74 GVAFY-RGADCCVLVFDVTAPNTFKTL------DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 222 NDLLNR 227
DL NR
Sbjct: 127 IDLENR 132
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus,
VIZI enzymes involved in replication, ATP-binding, cell
membrane endosome; 1.65A {Chikungunya virus} PDB:
3gpo_A* 3gpq_A
Length = 168
Score = 27.2 bits (61), Expect = 5.1
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 170 QQLQSYYTRRALAIAKQLGFTSI 192
++L + Y R +LG S+
Sbjct: 91 RELAAAY-REVAKEVTRLGVNSV 112
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 27.2 bits (61), Expect = 5.2
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 31/110 (28%)
Query: 135 FHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ-----LQSYYTRRALA- 182
+ + ++ T G VDF L+ I+ Q WD GQ+ SYY R A
Sbjct: 58 YTESYISTIG--VDFKIRTIELDGKTIKLQI-----WDTAGQERFRTITSSYY-RGAHGI 109
Query: 183 -----IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNR 227
+ Q F ++ + W E R + V ++ GN+ DL +
Sbjct: 110 IVVYDVTDQESFNNV------KQWLQEIDRYASENVNKLLVGNKCDLTTK 153
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 27.2 bits (61), Expect = 5.4
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 33/117 (28%)
Query: 128 FTEVRSVFHDEFLHTGGDEVDFYC---WLNDPNIR-QFLADRGWD--GQQ-----LQSYY 176
FTE + F + HT G V+F ++ I+ Q WD GQ+ +SYY
Sbjct: 35 FTEKK--FMADCPHTIG--VEFGTRIIEVSGQKIKLQI-----WDTAGQERFRAVTRSYY 85
Query: 177 TRRALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNR 227
R A I ++ + + +W +++R + V + GN+ DL +
Sbjct: 86 -RGAAGALMVYDITRRSTYNHL------SSWLTDARNLTNPNTVIILIGNKADLEAQ 135
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex,
hydrolase/DNA complex complex; 3.00A {Sulfolobus
solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Length = 500
Score = 27.9 bits (63), Expect = 5.6
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 200 NWRSESRRMDPDTVVQVWYGNRNDL 224
NW E + P V++ +R+ +
Sbjct: 100 NWEEELSKFAPHLRFAVFHEDRSKI 124
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 27.2 bits (61), Expect = 5.8
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 31/107 (28%)
Query: 135 FHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ-----LQSYYTRRALA- 182
+ + ++ T G VDF L+ I+ Q WD GQ+ SYY R A
Sbjct: 41 YTESYISTIG--VDFKIRTIELDGKTIKLQI-----WDTAGQERFRTITSSYY-RGAHGI 92
Query: 183 -----IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDL 224
+ Q F ++ + W E R + V ++ GN+ DL
Sbjct: 93 IVVYDVTDQESFNNV------KQWLQEIDRYASENVNKLLVGNKCDL 133
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 27.1 bits (61), Expect = 6.3
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 33/114 (28%)
Query: 128 FTEVRSVFHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ-----LQSYY 176
F E + F D+ HT G V+F + ++ Q WD GQ+ +SYY
Sbjct: 30 FIEKK--FKDDSNHTIG--VEFGSKIINVGGKYVKLQI-----WDTAGQERFRSVTRSYY 80
Query: 177 TRRALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDL 224
R A I + + ++ NW +++R + +V + GN+ DL
Sbjct: 81 -RGAAGALLVYDITSRETYNAL------TNWLTDARMLASQNIVIILCGNKKDL 127
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 27.2 bits (61), Expect = 6.4
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 31/114 (27%)
Query: 131 VRSVFHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ-----LQSYYTRR 179
R+ F+ E T G V+F ++ I+ Q WD G + +YY R
Sbjct: 50 TRNEFNLESKSTIG--VEFATRSIQVDGKTIKAQI-----WDTAGLERYRAITSAYY-RG 101
Query: 180 ALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNR 227
A+ IAK L + ++ E W E R +V + GN++DL +
Sbjct: 102 AVGALLVYDIAKHLTYENV------ERWLKELRDHADSNIVIMLVGNKSDLRHL 149
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 26.8 bits (60), Expect = 6.8
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 33/117 (28%)
Query: 128 FTEVRSVFHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ-----LQSYY 176
FT+ R F T G V+F ++ I+ Q WD GQ+ +SYY
Sbjct: 41 FTDKR--FQPVHDLTIG--VEFGARMVNIDGKQIKLQI-----WDTAGQESFRSITRSYY 91
Query: 177 TRRALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNR 227
R A I ++ F + +W ++R+ +V + GN++DL +R
Sbjct: 92 -RGAAGALLVYDITRRETFNHL------TSWLEDARQHSSSNMVIMLIGNKSDLESR 141
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 26.8 bits (60), Expect = 7.0
Identities = 28/119 (23%), Positives = 36/119 (30%), Gaps = 38/119 (31%)
Query: 123 FVRDLFTEVRSVFHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ----- 171
F D F E T G VDF L IR Q WD GQ+
Sbjct: 46 FTDDTFCE-------ACKSTVG--VDFKIKTVELRGKKIRLQI-----WDTAGQERFNSI 91
Query: 172 LQSYYTRRALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDL 224
+YY R A I K+ F + W + + + GN+ D
Sbjct: 92 TSAYY-RSAKGIILVYDITKKETFDDL------PKWMKMIDKYASEDAELLLVGNKLDC 143
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa
MCM3-associated protein; mRNA export, transport
protein-DNA binding protein complex; 2.10A {Homo
sapiens}
Length = 101
Score = 26.1 bits (57), Expect = 7.3
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Query: 158 IRQFLADRGWDGQQLQSYYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVW 217
+R L + GW QL+++ + K+ G + ++ + R + PD+V
Sbjct: 33 LRAKLIECGWK-DQLKAH----CKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSV---- 83
Query: 218 YGNRNDLLNRI 228
+ +LL RI
Sbjct: 84 ---KKELLQRI 91
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 27.5 bits (62), Expect = 8.0
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 163 ADRGWDGQQLQSYYTRRALAIAKQLGF 189
A W Y+TR + + LGF
Sbjct: 332 AVAPWSNGHTAEYFTRMMAGLGEALGF 358
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 26.8 bits (60), Expect = 8.0
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 31/107 (28%)
Query: 135 FHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ-----LQSYYTRRALA- 182
F+ F+ T G +DF L+ I+ Q WD GQ+ +YY R A+
Sbjct: 33 FNSTFISTIG--IDFKIRTIELDGKRIKLQI-----WDTAGQERFRTITTAYY-RGAMGI 84
Query: 183 -----IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDL 224
I + F +I NW V ++ GN+ D+
Sbjct: 85 MLVYDITNEKSFDNI------RNWIRNIEEHASADVEKMILGNKCDV 125
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 27.0 bits (60), Expect = 8.0
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 38/122 (31%)
Query: 123 FVRDLFTEVRSVFHDEFLHTGGDEVDFYC---WLNDPNIR-QFLADRGWD--GQQ----- 171
F ++ F + T G V+F + I+ Q WD GQ+
Sbjct: 33 FTKNEFNM-------DSKSTIG--VEFATRTLEIEGKRIKAQI-----WDTAGQERYRAI 78
Query: 172 LQSYYTRRALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLL 225
+YY R A+ I+K + + +W SE R D V GN++DL
Sbjct: 79 TSAYY-RGAVGALIVYDISKSSSYENC------NHWLSELRENADDNVAVGLIGNKSDLA 131
Query: 226 NR 227
+
Sbjct: 132 HL 133
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 26.8 bits (60), Expect = 8.8
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 31/107 (28%)
Query: 135 FHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ-----LQSYYTRRALA- 182
F + HT G V+F + ++ Q WD GQ+ +SYY R A
Sbjct: 50 FKQDSNHTIG--VEFGSRVVNVGGKTVKLQI-----WDTAGQERFRSVTRSYY-RGAAGA 101
Query: 183 -----IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDL 224
I + + S+ W +++R + +V + GN+ DL
Sbjct: 102 LLVYDITSRETYNSL------AAWLTDARTLASPNIVVILCGNKKDL 142
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 26.4 bits (59), Expect = 9.4
Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 37/119 (31%)
Query: 123 FVRDLFTEVRSVFHDEFLHTGGDEVDF---YCWLNDPNIR-QFLADRGWD--GQQ----- 171
F F F+ T G +DF ++ ++ Q WD GQ+
Sbjct: 30 FKDGAFLA------GTFISTVG--IDFRNKVLDVDGVKVKLQM-----WDTAGQERFRSV 76
Query: 172 LQSYYTRRALA------IAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDL 224
+YY R A A + + F +I + W +E V + GN+ D
Sbjct: 77 THAYY-RDAHALLLLYDVTNKASFDNI------QAWLTEIHEYAQHDVALMLLGNKVDS 128
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.462
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,468,392
Number of extensions: 337327
Number of successful extensions: 1223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1163
Number of HSP's successfully gapped: 95
Length of query: 315
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 222
Effective length of database: 4,105,140
Effective search space: 911341080
Effective search space used: 911341080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)