RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12961
(315 letters)
>d1nowa1 c.1.8.6 (A:200-552) beta-hexosaminidase B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 353
Score = 148 bits (375), Expect = 8e-43
Identities = 93/235 (39%), Positives = 149/235 (63%), Gaps = 17/235 (7%)
Query: 83 WSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHT 142
SWG G +LL L++ +GPI+PT +++Y F+ F E+ VF D+F+H
Sbjct: 97 LSWGKGQKDLLTPCYSRQNKLDS----FGPINPTLNTTYSFLTTFFKEISEVFPDQFIHL 152
Query: 143 GGDEVDFYCWLNDPNIRQFLADRGW--DGQQLQSYYTRRALAIAKQLGFTSIVWQEVYEN 200
GGDEV+F CW ++P I+ F+ +G+ D ++L+S+Y ++ L I + SIVWQEV+++
Sbjct: 153 GGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIVWQEVFDD 212
Query: 201 WRSESRRMDPDTVVQVW-YGNRNDLLNRITRDGYTAITSAGWYLDVLDIRDGYGWQQEWQ 259
++ P T+V+VW + L+R+T G+ I SA WYLD++ + Q+W+
Sbjct: 213 ----KAKLAPGTIVEVWKDSAYPEELSRVTASGFPVILSAPWYLDLIS------YGQDWR 262
Query: 260 RYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSN 314
+YY+++P +F GT +Q L +GGEAC+WGE VD +N+ R+WPR +A+ ERLWS+
Sbjct: 263 KYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERLWSS 317
Score = 76.0 bits (186), Expect = 3e-16
Identities = 31/61 (50%), Positives = 47/61 (77%)
Query: 24 GWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLW 83
+ Q+W++YY+++P +F GT +Q L +GGEAC+WGE VD +N+ R+WPR +A+ ERLW
Sbjct: 256 SYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERLW 315
Query: 84 S 84
S
Sbjct: 316 S 316
>d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 362
Score = 141 bits (357), Expect = 3e-40
Identities = 95/234 (40%), Positives = 136/234 (58%), Gaps = 12/234 (5%)
Query: 83 WSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHT 142
SWG G P LL + +GP++P+ +++Y+F+ F EV SVF D +LH
Sbjct: 98 LSWGPGIPGLLTPCY----SGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFPDFYLHL 153
Query: 143 GGDEVDFYCWLNDPNIRQFLADRGW--DGQQLQSYYTRRALAIAKQLGFTSIVWQEVYEN 200
GGDEVDF CW ++P I+ F+ +G+ D +QL+S+Y + L I G +VWQEV++N
Sbjct: 154 GGDEVDFTCWKSNPEIQDFMRKKGFGEDFKQLESFYIQTLLDIVSSYGKGYVVWQEVFDN 213
Query: 201 WRSESRRMDPDTVVQVWYGNRNDLLNRITRDGYTAITSAGWYLDVLDIRDGYGWQQEWQR 260
+ N L +T+ G+ A+ SA WYL+ R YG W+
Sbjct: 214 KVKIQPDTIIQVWREDIPVNYMKELELVTKAGFRALLSAPWYLN----RISYGPD--WKD 267
Query: 261 YYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSN 314
+Y ++P F GTPEQ +LV+GGEAC+WGE VD +N+ R+WPR A+AERLWSN
Sbjct: 268 FYVVEPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERLWSN 321
Score = 75.6 bits (185), Expect = 4e-16
Identities = 33/62 (53%), Positives = 46/62 (74%)
Query: 23 YGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERL 82
+ +W+ +Y ++P F GTPEQ +LV+GGEAC+WGE VD +N+ R+WPR A+AERL
Sbjct: 259 ISYGPDWKDFYVVEPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERL 318
Query: 83 WS 84
WS
Sbjct: 319 WS 320
>d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus
actinomycetemcomitans [TaxId: 714]}
Length = 344
Score = 102 bits (256), Expect = 8e-26
Identities = 36/239 (15%), Positives = 73/239 (30%), Gaps = 46/239 (19%)
Query: 101 PDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHD--EFLHTGGDEVDFYCWLNDPNI 158
+++ ID T + S F++ L +EV +F D + H GGDE + N I
Sbjct: 122 LQGLKSRQVDDEIDITNADSITFMQSLMSEVIDIFGDTSQHFHIGGDEFGYSVESNHEFI 181
Query: 159 RQFLADRGWDGQQLQSYYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVW- 217
+ ++ G + +W + E +++P+ + W
Sbjct: 182 TYA----------------NKLSYFLEKKGLKTRMWNDGLIKNTFE--QINPNIEITYWS 223
Query: 218 -------------YGNRNDLLNRITRDGYTAITSAGWYLDVLDIRDGYGWQQ-------- 256
+ L + G+T + +YL + + + Q
Sbjct: 224 YDGDTQDKNEAAERRDMRVSLPELLAKGFTVLNYNSYYLY-IVPKASPTFSQDAAFAAKD 282
Query: 257 --EWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWS 313
+ D + + + G IWGE + I ++ E +
Sbjct: 283 VIKNWDLGVWDGRNTKNRVQNTHEIAGAALSIWGEDAKALK-DETIQKNTKSLLEAVIH 340
Score = 63.3 bits (153), Expect = 5e-12
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 1/61 (1%)
Query: 28 EWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAERLWSWGY 87
+ D + + + G IWGE + I ++ E +
Sbjct: 285 KNWDLGVWDGRNTKNRVQNTHEIAGAALSIWGEDAKALK-DETIQKNTKSLLEAVIHKTN 343
Query: 88 G 88
G
Sbjct: 344 G 344
>d1qbaa3 c.1.8.6 (A:338-780) Bacterial chitobiase
(beta-N-acetylhexosaminidase) {Serratia marcescens
[TaxId: 615]}
Length = 443
Score = 98.9 bits (245), Expect = 6e-24
Identities = 45/270 (16%), Positives = 78/270 (28%), Gaps = 62/270 (22%)
Query: 107 QEYWGPIDPTKSSSYDFVRDLFTEVRSVF-----HDEFLHTGGDEV-------------- 147
++P SS FV + E+ + + H GGDE
Sbjct: 159 FNRQSYLNPCLDSSQRFVDKVIGEIAQMHKEAGQPIKTWHFGGDEAKNIRLGAGYTDKAK 218
Query: 148 ------------DFYCWLNDPNIRQFLADRG-WDGQQLQSYYTRRALAIAKQLGFTSIVW 194
+ W + + + D + L SY+ + + K G +
Sbjct: 219 PEPGKGIIDQGNEDKPWAKSQVCQTMIKEGKVADMEHLPSYFGQEVSKLVKAHGIDRMQA 278
Query: 195 QEVYENWRSESRRMDPDTVV----QVWYGNRNDLLNRITRDGYTAITSAG--WYLDVLDI 248
+ S+ V Y D +N GY + S Y+D
Sbjct: 279 WQDGLKDAESSKAFATSRVGVNFWDTLYWGGFDSVNDWANKGYEVVVSNPDYVYMDFPYE 338
Query: 249 RD----GYGWQ---QEWQRYYRIDPQEFPG----------------TPEQHSLVLGGEAC 285
+ GY W + ++ + P P + + G A
Sbjct: 339 VNPDERGYYWGTRFSDERKVFSFAPDNMPQNAETSVDRDGNHFNAKSDKPWPGAYGLSAQ 398
Query: 286 IWGERV-DESNVESRIWPRGAAIAERLWSN 314
+W E + +E I+PR ++AER W
Sbjct: 399 LWSETQRTDPQMEYMIFPRALSVAERSWHR 428
Score = 59.6 bits (143), Expect = 1e-10
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 17/74 (22%)
Query: 28 EWQRYYRIDPQEFPG----------------TPEQHSLVLGGEACIWGERV-DESNVESR 70
+ ++ + P P + + G A +W E + +E
Sbjct: 354 DERKVFSFAPDNMPQNAETSVDRDGNHFNAKSDKPWPGAYGLSAQLWSETQRTDPQMEYM 413
Query: 71 IWPRGAAIAERLWS 84
I+PR ++AER W
Sbjct: 414 IFPRALSVAERSWH 427
>d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase
{Streptomyces plicatus [TaxId: 1922]}
Length = 356
Score = 98.0 bits (243), Expect = 6e-24
Identities = 46/241 (19%), Positives = 79/241 (32%), Gaps = 29/241 (12%)
Query: 82 LWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLH 141
+ L C + P T+ + + K +YDFV D+ E+ ++ +LH
Sbjct: 101 TNAALASYAELNCD-GVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLH 159
Query: 142 TGGDEVDFYCWLNDPNIRQFLADRGWDGQQLQSYYTRRALAIAKQLGFTSIVWQEVYENW 201
GGDE + +R I + G T + W ++
Sbjct: 160 IGGDEAHSTPK------------------ADFVAFMKRVQPIVAKYGKTVVGWHQLAGAE 201
Query: 202 RSESRRMDPDTVVQVWYGNRNDLLNRITRDGYTAITSAGWYLDVLDIRDG-------YGW 254
E + + + + ++ R+G I S + +
Sbjct: 202 PVEGALVQYWGLDRTGDAEKAEV-AEAARNGTGLILSPADRTYLDMKYTKDTPLGLSWAG 260
Query: 255 QQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERV-DESNVESRIWPRGAAIAERLWS 313
E QR Y DP + V G EA +W E + D ++ +PR +AE WS
Sbjct: 261 YVEVQRSYDWDPAGYL-PGAPADAVRGVEAPLWTETLSDPDQLDYMAFPRLPGVAELGWS 319
Query: 314 N 314
Sbjct: 320 P 320
Score = 65.2 bits (158), Expect = 1e-12
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 16 DIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERV-DESNVESRIWPR 74
D + + E QR Y DP + V G EA +W E + D ++ +PR
Sbjct: 251 DTPLGLSWAGYVEVQRSYDWDPAGYL-PGAPADAVRGVEAPLWTETLSDPDQLDYMAFPR 309
Query: 75 GAAIAERLWS 84
+AE WS
Sbjct: 310 LPGVAELGWS 319
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 116
Score = 27.2 bits (60), Expect = 1.4
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 7/56 (12%)
Query: 13 TIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVE 68
+ DI + W +W+ +E +P L+ G + +
Sbjct: 38 SASDIAKHVYDNWPMDWE-------EEQVSSPNILRLIYQGRFLHGNVTLGALKLP 86
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 101
Score = 26.4 bits (58), Expect = 1.9
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 13 TIEDIKSIIEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVES 69
T+ +K + W +E + P T ++ L+ G+ + V +
Sbjct: 30 TVSALKETVISEWPREK--------ENGPKTVKEVKLISAGKVLENSKTVKDYRSPV 78
>d1sbpa_ c.94.1.1 (A:) Sulphate-binding protein {Salmonella
typhimurium [TaxId: 90371]}
Length = 309
Score = 27.6 bits (60), Expect = 2.3
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 120 SYDFVRDLFTEVRSVFHDEFLHTGGDEVDF 149
SYD R+L+ + F + GD V
Sbjct: 9 SYDPTRELYEQYNKAFSAHWKQETGDNVVI 38
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 27.1 bits (59), Expect = 3.9
Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 9/72 (12%)
Query: 175 YYTRRALAIAKQLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNRITRDGYT 234
+RA+ + + Q++ S D R +++ ++
Sbjct: 376 SVRQRAVDLLYAMC-DRSNAQQIVAEMLSYLETADYSI--------REEIVLKVAILAEK 426
Query: 235 AITSAGWYLDVL 246
WY+D +
Sbjct: 427 YAVDYTWYVDTI 438
>d1yvua1 b.34.14.1 (A:4-314) Argonaute homologue Aq_1447 {Aquifex
aeolicus [TaxId: 63363]}
Length = 311
Score = 26.6 bits (58), Expect = 3.9
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 198 YENWRSESRRMDPDTVVQVWYGNRNDLLNRITRDGYTAITSAGWYL 243
YEN E R D +V++ G R +L+ I R A+ GWY+
Sbjct: 258 YENLEDEERNEVAD-IVRMEPGKRLNLIRYILRRYVKALRDYGWYI 302
>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein
{Escherichia coli [TaxId: 562]}
Length = 221
Score = 26.2 bits (57), Expect = 5.2
Identities = 6/51 (11%), Positives = 16/51 (31%), Gaps = 7/51 (13%)
Query: 132 RSVFHDEFLHTG-------GDEVDFYCWLNDPNIRQFLADRGWDGQQLQSY 175
+ V H E GD + + + +++ + G + +
Sbjct: 29 KDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTV 79
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase
{Pseudonocardia thermophila [TaxId: 1848]}
Length = 203
Score = 25.9 bits (57), Expect = 5.7
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 6/75 (8%)
Query: 113 IDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFL------ADRG 166
+ P + + E R + +EF + W + +R + G
Sbjct: 120 LPPNWFKEPQYRSRVVREPRQLLKEEFGFEVPPSKEIKVWDSSSEMRFVVLPQRPAGTDG 179
Query: 167 WDGQQLQSYYTRRAL 181
W ++L + TR ++
Sbjct: 180 WSEEELATLVTRESM 194
>d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia
coli [TaxId: 562]}
Length = 314
Score = 25.9 bits (56), Expect = 5.9
Identities = 12/110 (10%), Positives = 24/110 (21%), Gaps = 21/110 (19%)
Query: 126 DLFTEVRSVFHDEFLHTGGDEVDFYCWLNDPNIRQFLADRGWDGQQLQSYYTRRALAIAK 185
L + + + RQ+L RG + + +
Sbjct: 4 QLMDGLNTFYQQSLQQPVATSA-----------RQYLEKRGLSHEVIARF---------- 42
Query: 186 QLGFTSIVWQEVYENWRSESRRMDPDTVVQVWYGNRNDLLNRITRDGYTA 235
+GF W V + + + N R+
Sbjct: 43 AIGFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMF 92
>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722
{Novosphingobium aromaticivorans [TaxId: 48935]}
Length = 153
Score = 25.5 bits (55), Expect = 5.9
Identities = 8/73 (10%), Positives = 18/73 (24%), Gaps = 11/73 (15%)
Query: 207 RMDPDTVVQVWYGNRNDLLNRITRDGYTAITSAGWYLDVLDIRDGYGWQQEWQRYYRIDP 266
++ DT + + G GW+ + +D
Sbjct: 90 TVEGDTATARCH-----SVVFRCVSGTFGSHRVSANRWTFRRTPA-GWRAVRRENALLD- 142
Query: 267 QEFPGTPEQHSLV 279
G+ +L+
Sbjct: 143 ----GSAAARALL 151
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 25.8 bits (55), Expect = 7.4
Identities = 29/244 (11%), Positives = 65/244 (26%), Gaps = 15/244 (6%)
Query: 21 IEYGWQQEWQRYYRIDPQEFPGTPEQHSLVLGGEACIWGERVDESNVESRIWPRGAAIAE 80
I ++ + + + + + G E + + P E
Sbjct: 93 IRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVE 152
Query: 81 RLWSWGYGNPNLLCKINIT--IPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDE 138
R Y + + I + G + + + + DL
Sbjct: 153 RRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPW 212
Query: 139 FLHTGGDEVDFYCWLNDPNIRQFLADRGWDGQQLQSYYTRRALAIAKQLGFTSIVWQEVY 198
+ DE D + A +G+ ++++ I K + +
Sbjct: 213 GIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKD------ILKPHA 266
Query: 199 ENWRSESRRMDPDTVVQVWYGNRNDLLNRITRDGYTAITSAGWYLDVLDIRDGYGWQQEW 258
W + + + G + DG + G +D + + YG ++
Sbjct: 267 VFWPTMLKAAGIPMYRHLNVGG-----FLLGPDGRKMSKTLGNVVDPFALLEKYG--RDA 319
Query: 259 QRYY 262
RYY
Sbjct: 320 LRYY 323
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.462
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,387,765
Number of extensions: 68929
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 34
Length of query: 315
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,240,546
Effective search space: 285325580
Effective search space used: 285325580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.8 bits)