BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12962
(75 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LMY|A Chain A, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
pdb|3LMY|B Chain B, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
Length = 556
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 4 HVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFL 63
H SWG G +LL L++ +GPI+PT +++Y F+ F E+ VF D+F+
Sbjct: 294 HTLSWGKGQKDLLTPCYSRQNKLDS----FGPINPTLNTTYSFLTTFFKEISEVFPDQFI 349
Query: 64 HTGGDEVDFYCW 75
H GGDEV+F CW
Sbjct: 350 HLGGDEVEFKCW 361
>pdb|1NOU|A Chain A, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOU|B Chain B, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOW|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NOW|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NP0|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|1NP0|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|2GJX|B Chain B, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|C Chain C, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|F Chain F, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|G Chain G, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 4 HVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFL 63
H SWG G +LL L++ +GPI+PT +++Y F+ F E+ VF D+F+
Sbjct: 245 HTLSWGKGQKDLLTPCYSRQNKLDS----FGPINPTLNTTYSFLTTFFKEISEVFPDQFI 300
Query: 64 HTGGDEVDFYCW 75
H GGDEV+F CW
Sbjct: 301 HLGGDEVEFKCW 312
>pdb|1O7A|A Chain A, Human Beta-Hexosaminidase B
pdb|1O7A|B Chain B, Human Beta-Hexosaminidase B
pdb|1O7A|C Chain C, Human Beta-Hexosaminidase B
pdb|1O7A|D Chain D, Human Beta-Hexosaminidase B
pdb|1O7A|E Chain E, Human Beta-Hexosaminidase B
pdb|1O7A|F Chain F, Human Beta-Hexosaminidase B
Length = 515
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 4 HVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFL 63
H SWG G +LL L++ +GPI+PT +++Y F+ F E+ VF D+F+
Sbjct: 253 HTLSWGKGQKDLLTPCYSRQNKLDS----FGPINPTLNTTYSFLTTFFKEISEVFPDQFI 308
Query: 64 HTGGDEVDFYCW 75
H GGDEV+F CW
Sbjct: 309 HLGGDEVEFKCW 320
>pdb|2GK1|B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|D Chain D, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|F Chain F, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|H Chain H, X-Ray Crystal Structure Of Ngt-Bound Hexa
Length = 503
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 4 HVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFL 63
H SWG G +LL L++ +GPI+PT +++Y F+ F E+ VF D+F+
Sbjct: 245 HTLSWGKGQKDLLTPCYSRQNKLDS----FGPINPTLNTTYSFLTTFFKEISEVFPDQFI 300
Query: 64 HTGGDEVDFYCW 75
H GGDEV+F CW
Sbjct: 301 HLGGDEVEFKCW 312
>pdb|2GK1|A Chain A, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|C Chain C, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|E Chain E, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|G Chain G, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GJX|A Chain A, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|D Chain D, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|E Chain E, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|H Chain H, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 4 HVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFL 63
H SWG G P LL T +GP++P+ +++Y+F+ F EV SVF D +L
Sbjct: 240 HTLSWGPGIPGLLTPCYSGSEPSGT----FGPVNPSLNNTYEFMSTFFLEVSSVFPDFYL 295
Query: 64 HTGGDEVDFYCW 75
H GGDEVDF CW
Sbjct: 296 HLGGDEVDFTCW 307
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 34 GPIDPTKSSSYDFVRDLFTEVRSVFH-DEFLHTGGDEVDFYCW 75
G ++PTK Y ++ D+++++ VF + H GGDEV CW
Sbjct: 310 GQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACW 352
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 34 GPIDPTKSSSYDFVRDLFTEVRSVFH-DEFLHTGGDEVDFYCW 75
G ++PTK Y ++ D+++++ VF + H GGDEV CW
Sbjct: 310 GQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACW 352
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 34 GPIDPTKSSSYDFVRDLFTEVRSVFH-DEFLHTGGDEVDFYCW 75
G ++PTK Y ++ D+++++ VF + H GGDEV CW
Sbjct: 313 GQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACW 355
>pdb|1HP4|A Chain A, Crystal Structure Of Streptomyces Plicatus
Beta-N-Acetylhexosaminidase
pdb|1HP5|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase
Complexed With Intermediate Analouge Nag-Thiazoline
pdb|1JAK|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase In
Complex With (2r,
3r,4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride (Ifg)
pdb|1M01|A Chain A, Wildtype Streptomyces Plicatus Beta-Hexosaminidase In
Complex With Product (Glcnac)
Length = 512
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 40 KSSSYDFVRDLFTEVRSVFHDEFLHTGGDE 69
K +YDFV D+ E+ ++ +LH GGDE
Sbjct: 291 KDVTYDFVDDVIGELAALTPGRYLHIGGDE 320
>pdb|3GH4|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12
pdb|3GH5|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Glcnac
pdb|3GH7|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Galnac
pdb|3SUR|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nag-Thiazoline.
pdb|3SUS|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With
Gal-Nag-Thiazoline
pdb|3SUT|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Pugnac
pdb|3SUU|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Gal-Pugnac
pdb|3SUV|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Dnj
pdb|3SUW|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Cas
Length = 525
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDE 69
P +Y FV D+ +E+ ++ ++H GGDE
Sbjct: 314 PRAEITYQFVEDVISELAAISPSPYIHLGGDE 345
>pdb|1M04|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313n)
In Complex With Product (Glcnac)
Length = 512
Score = 28.5 bits (62), Expect = 0.89, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 40 KSSSYDFVRDLFTEVRSVFHDEFLHTGGDE 69
K +YDFV D+ E+ ++ +LH GG+E
Sbjct: 291 KDVTYDFVDDVIGELAALTPGRYLHIGGNE 320
>pdb|1M03|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313a)
In Complex With Product (Glcnac)
Length = 512
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 40 KSSSYDFVRDLFTEVRSVFHDEFLHTGGDE 69
K +YDFV D+ E+ ++ +LH GG E
Sbjct: 291 KDVTYDFVDDVIGELAALTPGRYLHIGGAE 320
>pdb|3HJP|A Chain A, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
pdb|3HJP|B Chain B, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
pdb|3HJP|C Chain C, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
pdb|3HJP|D Chain D, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
Length = 164
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 15 LLCKINITIPDLNTTQEY-WGPIDPTKSSSYDFVRDLFTEV 54
+L K ++ + D N Y W DPTK +YD ++D+ T++
Sbjct: 115 VLAKRSVFVIDKNGIVRYKWVSEDPTKEPNYDEIKDVVTKL 155
>pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
FERROUS IONS At Neutral Ph
pdb|1PJ0|B Chain B, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
FERROUS IONS At Neutral Ph
pdb|1PJ1|A Chain A, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
Ions At Ph 5
pdb|1PJ1|B Chain B, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
Ions At Ph 5
Length = 375
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 NPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYD-FVRDLFTEVRSVFHD 60
+PN+ I+IP+L T E W + S SY +R++ + VF D
Sbjct: 90 SPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDD 139
>pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
pdb|1RNR|B Chain B, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
Length = 375
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 NPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYD-FVRDLFTEVRSVFHD 60
+PN+ I+IP+L T E W + S SY +R++ + VF D
Sbjct: 90 SPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDD 139
>pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1MRR|B Chain B, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1RIB|A Chain A, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
pdb|1RIB|B Chain B, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
Length = 375
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 NPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYD-FVRDLFTEVRSVFHD 60
+PN+ I+IP+L T E W + S SY +R++ + VF D
Sbjct: 90 SPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDD 139
>pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
Subunit, D84e Mutant
pdb|1PIM|B Chain B, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
Subunit, D84e Mutant
pdb|1PIU|A Chain A, Oxidized Ribonucleotide Reductase R2-d84e Mutant
Containing Oxo-bridged Diferric Cluster
pdb|1PIU|B Chain B, Oxidized Ribonucleotide Reductase R2-d84e Mutant
Containing Oxo-bridged Diferric Cluster
pdb|1PIZ|A Chain A, Ribonucleotide Reductase R2 D84e Mutant Soaked With
Ferrous Ions At Neutral Ph
pdb|1PIZ|B Chain B, Ribonucleotide Reductase R2 D84e Mutant Soaked With
Ferrous Ions At Neutral Ph
Length = 375
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 NPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYD-FVRDLFTEVRSVFHD 60
+PN+ I+IP+L T E W + S SY +R++ + VF D
Sbjct: 90 SPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDD 139
>pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1PIY|B Chain B, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1R65|A Chain A, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
pdb|1R65|B Chain B, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
Length = 375
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 NPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYD-FVRDLFTEVRSVFHD 60
+PN+ I+IP+L T E W + S SY +R++ + VF D
Sbjct: 90 SPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDD 139
>pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1PFR|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
Length = 340
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 NPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYD-FVRDLFTEVRSVFHD 60
+PN+ I+IP+L T E W + S SY +R++ + VF D
Sbjct: 90 SPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDD 139
>pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1XIK|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1JPR|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JPR|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JQC|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1MXR|A Chain A, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|1MXR|B Chain B, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|3UUS|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|4ERM|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERP|E Chain E, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|F Chain F, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|G Chain G, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|H Chain H, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
Length = 375
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 NPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYD-FVRDLFTEVRSVFHD 60
+PN+ I+IP+L T E W + S SY +R++ + VF D
Sbjct: 90 SPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDD 139
>pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space
Group P6(1)22
Length = 340
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 NPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYD-FVRDLFTEVRSVFHD 60
+PN+ I+IP+L T E W + S SY +R++ + VF D
Sbjct: 91 SPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDD 140
>pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli
pdb|1AV8|B Chain B, Ribonucleotide Reductase R2 Subunit From E. Coli
Length = 340
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 NPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYD-FVRDLFTEVRSVFHD 60
+PN+ I+IP+L T E W + S SY +R++ + VF D
Sbjct: 90 SPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDD 139
>pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-d84e (d84e
Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
Reductase)
pdb|1PM2|B Chain B, Crystal Structure Of Manganese Substituted R2-d84e (d84e
Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
Reductase)
Length = 339
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 NPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYD-FVRDLFTEVRSVFHD 60
+PN+ I+IP+L T E W + S SY +R++ + VF D
Sbjct: 90 SPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDD 139
>pdb|3RCN|A Chain A, Crystal Structure Of Beta-N-Acetylhexosaminidase From
Arthrobacter Aurescens
Length = 543
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 42 SSYDFVRDLFTEVRSVFHDEFLHTGGDEV 70
+S +F R++ EV +F ++ GGDEV
Sbjct: 289 TSLEFYRNVLDEVVEIFPSPWISLGGDEV 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.509
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,779,959
Number of Sequences: 62578
Number of extensions: 95997
Number of successful extensions: 219
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 28
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)