Query psy12962
Match_columns 75
No_of_seqs 111 out of 1008
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 15:34:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12962.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12962hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1now_A Beta-hexosaminidase bet 99.9 2.3E-23 7.9E-28 154.7 3.6 71 1-75 242-312 (507)
2 2gjx_A Beta-hexosaminidase alp 99.9 3.8E-23 1.3E-27 153.5 1.9 71 1-75 237-307 (507)
3 3rcn_A Beta-N-acetylhexosamini 99.8 1E-20 3.4E-25 141.7 5.5 74 1-75 246-322 (543)
4 2yl5_A Beta-N-acetylhexosamini 99.8 5.1E-21 1.8E-25 140.0 2.4 71 1-75 117-189 (442)
5 2yl6_A Beta-N-acetylhexosamini 99.8 1.8E-20 6.3E-25 136.7 1.3 67 1-71 114-183 (434)
6 3gh5_A HEX1, beta-hexosaminida 99.8 2.6E-19 8.9E-24 133.7 6.7 73 1-74 278-350 (525)
7 1jak_A Beta-N-acetylhexosamini 99.8 6.7E-19 2.3E-23 130.9 7.1 71 1-72 253-323 (512)
8 3ozo_A N-acetylglucosaminidase 99.7 9.5E-19 3.2E-23 131.8 1.5 73 1-75 278-352 (572)
9 1yht_A DSPB; beta barrel, hydr 99.7 2.2E-18 7.5E-23 123.6 2.7 72 1-75 117-190 (367)
10 2epl_X N-acetyl-beta-D-glucosa 99.7 3.8E-18 1.3E-22 129.4 3.6 60 1-75 167-230 (627)
11 1c7s_A Beta-N-acetylhexosamini 99.6 4.7E-17 1.6E-21 126.9 3.3 71 1-71 422-515 (858)
12 2v5d_A O-GLCNACASE NAGJ; famil 95.6 0.011 3.9E-07 45.4 4.2 31 41-72 241-271 (737)
13 2v5c_A O-GLCNACASE NAGJ; glyco 95.5 0.014 4.9E-07 44.2 4.4 31 41-72 241-271 (594)
14 2aaz_A TS, tsase, thymidylate 66.9 0.98 3.3E-05 31.9 -0.4 31 38-68 225-255 (317)
15 1f28_A Thymidylate synthase; b 63.9 0.96 3.3E-05 31.7 -0.9 31 38-68 208-238 (297)
16 3mi6_A Alpha-galactosidase; NE 62.5 27 0.00093 27.2 6.9 34 34-67 447-480 (745)
17 1tis_A Thymidylate synthase; t 61.9 1.4 4.7E-05 30.7 -0.4 31 38-68 185-215 (286)
18 3ed7_A Tsase, TS, thymidylate 61.4 1.4 4.9E-05 30.8 -0.4 31 38-68 206-236 (295)
19 3kgb_A Thymidylate synthase 1/ 59.8 1.3 4.3E-05 31.1 -0.9 31 38-68 203-233 (294)
20 3v8h_A TS, tsase, thymidylate 59.7 1.6 5.4E-05 31.0 -0.4 31 38-68 227-257 (327)
21 1j3k_C Bifunctional dihydrofol 58.8 1.3 4.6E-05 31.4 -0.9 31 38-68 239-269 (328)
22 2g8o_A TS, tsase, thymidylate 58.3 1.4 4.7E-05 30.3 -0.9 31 38-68 175-205 (264)
23 3qj7_A TS, tsase, thymidylate 58.0 1.8 6.1E-05 29.9 -0.4 31 38-68 176-206 (264)
24 1bkp_A Thymidylate synthase A; 57.1 1.9 6.4E-05 29.9 -0.4 31 38-68 189-219 (278)
25 2yfo_A Alpha-galactosidase-suc 56.9 27 0.00091 26.8 5.9 32 35-66 447-478 (720)
26 3uwl_A TS, tsase, thymidylate 56.0 1.6 5.4E-05 30.7 -0.9 30 39-68 227-256 (315)
27 1hw4_A TS, thymidylate synthas 54.3 1.8 6.1E-05 31.1 -0.9 31 38-68 266-296 (355)
28 4dq1_A TS, tsase, thymidylate 52.0 2 6.9E-05 30.4 -0.9 31 38-68 233-263 (321)
29 3ix6_A TS, tsase, thymidylate 51.3 2.7 9.1E-05 30.2 -0.4 31 38-68 271-301 (360)
30 4i4d_A Peptide synthetase NRPS 49.8 9.3 0.00032 21.1 1.9 28 42-69 16-47 (93)
31 3hj3_A Chain A, crystal struct 48.4 3.2 0.00011 31.1 -0.4 31 38-68 432-462 (521)
32 3irm_A Bifunctional dihydrofol 44.7 3.1 0.00011 31.1 -0.9 31 38-68 432-462 (521)
33 3nrr_A Dihydrofolate reductase 43.3 3.4 0.00012 30.9 -0.9 31 38-68 426-456 (515)
34 1b5e_A Protein (deoxycytidylat 43.1 1.9 6.6E-05 29.2 -2.1 30 39-68 178-214 (246)
35 1jb0_J Photosystem 1 reaction 42.9 22 0.00074 17.8 2.4 21 44-64 19-39 (41)
36 3qg2_A Bifunctional dihydrofol 40.5 4 0.00014 31.2 -0.9 31 38-68 519-549 (608)
37 1dny_A Non-ribosomal peptide s 40.5 21 0.0007 19.7 2.4 30 40-69 12-45 (91)
38 3izc_k 60S ribosomal protein R 38.3 22 0.00076 21.1 2.3 18 42-59 35-52 (100)
39 2xn2_A Alpha-galactosidase; hy 37.8 1.3E+02 0.0045 23.0 7.1 34 34-67 450-483 (732)
40 3tvk_A DGC, diguanylate cyclas 37.3 27 0.00093 21.8 2.8 23 48-70 57-85 (179)
41 4fnq_A Alpha-galactosidase AGA 32.3 1E+02 0.0034 23.6 5.6 29 35-63 447-475 (729)
42 2di0_A Activating signal coint 29.4 36 0.0012 18.8 2.1 14 47-60 13-26 (71)
43 1p3q_Q VPS9P, vacuolar protein 27.9 39 0.0013 17.7 2.0 13 48-60 13-25 (54)
44 4a18_Q RPL36, 60S ribosomal pr 27.3 23 0.00078 21.2 1.1 18 42-59 36-53 (104)
45 3qyy_A Response regulator; C-D 26.5 34 0.0012 19.9 1.8 25 46-70 64-94 (167)
46 2vxg_A LD41624, GE-1, CG6181-P 25.7 67 0.0023 19.7 3.1 22 35-56 85-106 (139)
47 2w9y_A CE-FAR-7, fatty acid/re 25.6 64 0.0022 20.1 3.0 25 35-59 76-100 (140)
48 1zy9_A Alpha-galactosidase; TM 24.4 96 0.0033 23.0 4.2 31 34-65 308-338 (564)
49 4f9d_A Poly-beta-1,6-N-acetyl- 24.1 52 0.0018 25.0 2.7 25 33-57 395-419 (618)
50 3mtk_A Diguanylate cyclase/pho 23.9 47 0.0016 19.6 2.1 24 47-70 59-88 (178)
51 3icl_A EAL/ggdef domain protei 23.7 61 0.0021 18.7 2.6 25 46-70 52-82 (171)
52 3hvw_A Diguanylate-cyclase (DG 23.7 52 0.0018 19.5 2.3 24 47-70 53-81 (176)
53 2cq8_A 10-formyltetrahydrofola 23.2 17 0.00059 21.5 -0.0 35 36-70 19-58 (110)
54 3ign_A Diguanylate cyclase; gg 22.2 54 0.0018 19.2 2.1 25 46-70 61-91 (177)
55 1bh9_A TAFII18; histone fold, 22.2 85 0.0029 15.6 3.1 17 39-55 19-35 (45)
No 1
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Probab=99.87 E-value=2.3e-23 Score=154.72 Aligned_cols=71 Identities=41% Similarity=0.897 Sum_probs=62.1
Q ss_pred CchhHHHHHHhCCCCcccccccCCCCCCCcccccccCCCChhHHHHHHHHHHHHHhhcCCCcEEecCCCCCCCCC
Q psy12962 1 MSWHVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCW 75 (75)
Q Consensus 1 ~PGH~~a~~~a~P~l~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgDEv~~~cW 75 (75)
||||+.+|+++||+|.+.|. ....+++.+++|||.+++||+|+++|++||+++||++||||||||++..||
T Consensus 242 ~PGH~~a~~~~~p~L~~~~~----~~~~~~~~~~~l~p~~~~t~~fl~~v~~Ev~~lFp~~~iHiGgDE~~~~~w 312 (507)
T 1now_A 242 TPGHTLSWGKGQKDLLTPCY----SRQNKLDSFGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCW 312 (507)
T ss_dssp ESSSCTTHHHHSTTCEEECC----C----CCSEEEECTTCHHHHHHHHHHHHHHHHHCCSSEEEEECCSCCCHHH
T ss_pred CchhHHHHHHhCHHhcccCC----CCCCcCCCCcccCCCcHHHHHHHHHHHHHHHHhCCCCeEeecccccccchh
Confidence 69999999999999988776 322234556899999999999999999999999999999999999999887
No 2
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Probab=99.86 E-value=3.8e-23 Score=153.51 Aligned_cols=71 Identities=44% Similarity=0.868 Sum_probs=63.4
Q ss_pred CchhHHHHHHhCCCCcccccccCCCCCCCcccccccCCCChhHHHHHHHHHHHHHhhcCCCcEEecCCCCCCCCC
Q psy12962 1 MSWHVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCW 75 (75)
Q Consensus 1 ~PGH~~a~~~a~P~l~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgDEv~~~cW 75 (75)
||||+.+|+++||+|...|. ....+++.+++|||.+++||+|+++|++|++++||++||||||||++..||
T Consensus 237 ~PGH~~a~l~~~p~L~~~~~----~~~~~~~~~~~l~p~~~~t~~fl~~v~~Ev~~lFp~~~iHiGgDE~~~~~w 307 (507)
T 2gjx_A 237 TPGHTLSWGPGIPGLLTPCY----SGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFPDFYLHLGGDEVDFTCW 307 (507)
T ss_dssp CSSSCTTTTTTSTTCEEEEE----SSSSEEEEEEEECTTCHHHHHHHHHHHHHHHHHCCSSEEECCCCSCCSHHH
T ss_pred CcchHHHHHHhCHhhcccCC----CCCccCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCceEEecCcccccchh
Confidence 79999999999999987786 322334556899999999999999999999999999999999999999887
No 3
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Probab=99.81 E-value=1e-20 Score=141.69 Aligned_cols=74 Identities=23% Similarity=0.289 Sum_probs=57.8
Q ss_pred CchhHHHHHHhCCCCcccc-cccCCCC-CCCccc-ccccCCCChhHHHHHHHHHHHHHhhcCCCcEEecCCCCCCCCC
Q psy12962 1 MSWHVWSWGYGNPNLLCKI-NITIPDL-NTTQEY-WGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCW 75 (75)
Q Consensus 1 ~PGH~~a~~~a~P~l~~~~-~~~~~~~-~~~~~~-~~~l~~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgDEv~~~cW 75 (75)
||||+.||+++||+|.+.+ .+..+.. ...++. .+.||| +++||+|+++||+||+++||++||||||||++..||
T Consensus 246 ~PGH~~a~l~aypeL~~~~~~d~~~~~~~~~~g~~~~~L~p-~~~ty~fl~~v~~Ev~~lFp~~~iHiGgDE~~~~~W 322 (543)
T 3rcn_A 246 VPGHSQAAIAAYPELGAGPADGSSPVEVWTRWGINETVLEV-SETSLEFYRNVLDEVVEIFPSPWISLGGDEVPLTQW 322 (543)
T ss_dssp CSSSCHHHHHHCGGGSCCC----CCCCCCCSCSCCSCCCCC-SHHHHHHHHHHHHHHHHHCCCSEEEEECCCCCSHHH
T ss_pred cchhHHHHHHhChhhccCccccCcccccccccCcCCCccCC-CHHHHHHHHHHHHHHHHhCCCceEEEcccccccccc
Confidence 7999999999999997642 1011100 011111 257999 999999999999999999999999999999999988
No 4
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=99.81 E-value=5.1e-21 Score=140.01 Aligned_cols=71 Identities=15% Similarity=0.089 Sum_probs=58.3
Q ss_pred CchhHHHHHHhCCCCcccccccCCCCCCCcccccccCCCChhHHHHHHHHHHHHHhhcCC--CcEEecCCCCCCCCC
Q psy12962 1 MSWHVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHD--EFLHTGGDEVDFYCW 75 (75)
Q Consensus 1 ~PGH~~a~~~a~P~l~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~ev~~lf~~--~~~H~GgDEv~~~cW 75 (75)
||||+.||+++||+|.+.++ .........++|||.+++||+|+++|++||+++||+ +||||||||++..||
T Consensus 117 ~PGH~~a~l~~~p~l~~~~p----~~~~~~~~~~~l~~~~~~t~~fl~~v~~Ev~~lFp~~s~~iHiGgDE~~~~~~ 189 (442)
T 2yl5_A 117 SPGHMDAMLVAMEKLGIKNP----QAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFGTDEYANDAT 189 (442)
T ss_dssp ESSSCHHHHHHHHHTTCCCC----EEESSSEEEEEECTTCHHHHHHHHHHHHHHHHHHBTTBSEEEEECCCSCGGGT
T ss_pred cchhHHHHHHhChhhcCCCC----ccccCCCCCcccCCCChhHHHHHHHHHHHHHHhcCCCCCEEEecCccccccch
Confidence 79999999999999964322 110011123689999999999999999999999994 899999999999987
No 5
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET: ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A* 2yl8_A* 3rpm_A*
Probab=99.78 E-value=1.8e-20 Score=136.73 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=54.9
Q ss_pred CchhHHHHHHhCCCCcccccccCCCCC-CCcccccccCCCChhHHHHHHHHHHHHHhhcCC--CcEEecCCCCC
Q psy12962 1 MSWHVWSWGYGNPNLLCKINITIPDLN-TTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHD--EFLHTGGDEVD 71 (75)
Q Consensus 1 ~PGH~~a~~~a~P~l~~~~~~~~~~~~-~~~~~~~~l~~~~~~t~~f~~~v~~ev~~lf~~--~~~H~GgDEv~ 71 (75)
||||+.||+++||+|.+.+. ... ......++|||.+++||+|+++||+||+++||+ +||||||||+.
T Consensus 114 ~PGH~~a~l~a~pel~~~~~----~~~~~g~~~~~~L~p~~~~t~~fl~~v~~Ev~~lFp~~~~~iHIGGDE~~ 183 (434)
T 2yl6_A 114 SPGHMDAILNAMKELGIQNP----NFSYFGKKSARTVDLDNEQAVAFTKALIDKYAAYFAKKTEIFNIGLDEYA 183 (434)
T ss_dssp ESSSCHHHHHHHHHHTCCCC----EEEETTEEEEEEECTTCHHHHHHHHHHHHHHHHHHTTTCSEEEEECCSTT
T ss_pred ccchHHHHHHhCHHhcCCCC----CCCcCCCCCCcccCCCCchHHHHHHHHHHHHHHHcCCCCCEEEEcCcccc
Confidence 79999999999999975332 110 011134789999999999999999999999995 79999999997
No 6
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*
Probab=99.78 E-value=2.6e-19 Score=133.71 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=57.8
Q ss_pred CchhHHHHHHhCCCCcccccccCCCCCCCcccccccCCCChhHHHHHHHHHHHHHhhcCCCcEEecCCCCCCCC
Q psy12962 1 MSWHVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYC 74 (75)
Q Consensus 1 ~PGH~~a~~~a~P~l~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgDEv~~~c 74 (75)
||||+.+|+++||+|.+... ..+........+++|||.+++||+|+++|++||+++||++||||||||++..+
T Consensus 278 ~PGH~~a~l~~yp~L~~~~~-~~~~~~~~~~~~~~l~~~~~~ty~fl~~vl~Ev~~lFp~~~iHiGgDE~~~~~ 350 (525)
T 3gh5_A 278 MPGHTNAALASYGELNPDGK-RKAMRTDTAVGYSTLMPRAEITYQFVEDVISELAAISPSPYIHLGGDESNATS 350 (525)
T ss_dssp CSSSCHHHHHHCGGGSTTSC-CCCCCCSCCCSCCCCCTTCHHHHHHHHHHHHHHHHHCCSSEEECCCCCCTTSC
T ss_pred ccchHHHHHHhChhhccCCC-CCcccccCCCCCcccCCCChhHHHHHHHHHHHHHHhCCCCEEEEcCcCCCCCC
Confidence 79999999999999975322 11111111123478999999999999999999999999999999999998754
No 7
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=99.76 E-value=6.7e-19 Score=130.89 Aligned_cols=71 Identities=27% Similarity=0.353 Sum_probs=56.3
Q ss_pred CchhHHHHHHhCCCCcccccccCCCCCCCcccccccCCCChhHHHHHHHHHHHHHhhcCCCcEEecCCCCCC
Q psy12962 1 MSWHVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDF 72 (75)
Q Consensus 1 ~PGH~~a~~~a~P~l~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgDEv~~ 72 (75)
||||+.+|+++||+|.+.+..+ +........++.|||.+++||+|+++|++|++++||++||||||||+..
T Consensus 253 ~PGH~~a~l~aypeL~~~~~~~-~~~~~~~~~~~~l~~~~~~t~~fl~~v~~Ev~~lFp~~~iHiGgDE~~~ 323 (512)
T 1jak_A 253 MPGHTNAALASYAELNCDGVAP-PLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGDEAHS 323 (512)
T ss_dssp CSSSCHHHHHHCGGGSTTSCCC-CCCCSCCCSCCCCCTTCHHHHHHHHHHHHHHHHTCCSSEEECCCCCCTT
T ss_pred CCchHHHHHHhCHHhcCcCCCC-ccccccCcCCcccCCCCHHHHHHHHHHHHHHHHhCCCCeEEECCccccc
Confidence 7999999999999997532211 0111111224689999999999999999999999999999999999964
No 8
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase, hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A* 3vtr_A*
Probab=99.71 E-value=9.5e-19 Score=131.76 Aligned_cols=73 Identities=27% Similarity=0.516 Sum_probs=57.1
Q ss_pred CchhHHHHHHhCCCCcccccccCCCCC-CCcccccccCCCChhHHHHHHHHHHHHHhhcCC-CcEEecCCCCCCCCC
Q psy12962 1 MSWHVWSWGYGNPNLLCKINITIPDLN-TTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHD-EFLHTGGDEVDFYCW 75 (75)
Q Consensus 1 ~PGH~~a~~~a~P~l~~~~~~~~~~~~-~~~~~~~~l~~~~~~t~~f~~~v~~ev~~lf~~-~~~H~GgDEv~~~cW 75 (75)
||||+.+..+ +|+|.. |.+..|... +.....++|||.+++||+|+++|++||+++||+ +||||||||++..||
T Consensus 278 ~PGH~~a~~~-~~~l~~-~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~Ev~~lF~s~~~iHiGgDE~~~~~W 352 (572)
T 3ozo_A 278 APAHVGEGWQ-DTDLTV-CFKAEPWKSYCVEPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACW 352 (572)
T ss_dssp ESSSCCTTCT-TTTCEE-CTTCSSGGGTCSSSSCCEECTTCTHHHHHHHHHHHHHHHHCCSCSCEEEECCCCCHHHH
T ss_pred cchHHHHHhc-Cchhhh-ccCcCCccccccCCCCcccCCCChhHHHHHHHHHHHHHHhcCCCCEEEEcCcccccccc
Confidence 7999976444 898865 753322211 111224789999999999999999999999995 999999999999887
No 9
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=99.71 E-value=2.2e-18 Score=123.58 Aligned_cols=72 Identities=22% Similarity=0.238 Sum_probs=54.7
Q ss_pred CchhHHHHHHhCCCCcccccccCCCCCCCcccccccCCCChhHHHHHHHHHHHHHhhcC--CCcEEecCCCCCCCCC
Q psy12962 1 MSWHVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFH--DEFLHTGGDEVDFYCW 75 (75)
Q Consensus 1 ~PGH~~a~~~a~P~l~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~ev~~lf~--~~~~H~GgDEv~~~cW 75 (75)
||||+.++++++|+....++ .... ......++|||.+++||+|+++|++||+++|| ++||||||||++..||
T Consensus 117 ~PGH~~a~l~~~~~~~~~~~--~~~~-~~~~~~~~l~~~~~~t~~fl~~v~~Ev~~lFp~~s~~iHiGgDE~~~~~~ 190 (367)
T 1yht_A 117 SPNHMTAIFKLVQKDRGVKY--LQGL-KSRQVDDEIDITNADSITFMQSLMSEVIDIFGDTSQHFHIGGDEFGYSVE 190 (367)
T ss_dssp ESSSCHHHHHHHHHHHCHHH--HHHH-BCSSCTTSBCTTCHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSCCTTSC
T ss_pred chHHHHHHHHhcccccCccc--cccc-CCCCCCceeCCCCHHHHHHHHHHHHHHHHhcCCCccEEEeCCcccccccc
Confidence 79999999998765321111 0000 00011268999999999999999999999999 5899999999999997
No 10
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A
Probab=99.70 E-value=3.8e-18 Score=129.44 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=55.3
Q ss_pred CchhHHHHHH----hCCCCcccccccCCCCCCCcccccccCCCChhHHHHHHHHHHHHHhhcCCCcEEecCCCCCCCCC
Q psy12962 1 MSWHVWSWGY----GNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCW 75 (75)
Q Consensus 1 ~PGH~~a~~~----a~P~l~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgDEv~~~cW 75 (75)
||||+.+|++ +||+|.. |. ++|||.+++||+|+++|++|+++ ||++||||||||++..||
T Consensus 167 ~PGH~~a~l~~g~~~yp~L~~-~~-------------~~l~~~~~~t~~fl~~v~~Ev~~-F~~~~~HiGgDE~~~~~~ 230 (627)
T 2epl_X 167 TLAHLSAFVKWGIKEVQELRD-VE-------------DILLIGEEKVYDLIEGMFQTMAH-LHTRKINIGMDEAHLVGL 230 (627)
T ss_dssp SSSCCHHHHTCCSHHHHTTEE-ET-------------TEECTTCHHHHHHHHHHHHHHTT-SSCCEEECCCCCCTTTTS
T ss_pred cCCcHHHHHhhhhhhcccccC-CC-------------CccCCCChhHHHHHHHHHHHHHh-CCCCeEEecchhcccchh
Confidence 7999999996 7999864 32 68999999999999999999999 999999999999999888
No 11
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=99.64 E-value=4.7e-17 Score=126.88 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=53.6
Q ss_pred CchhHHHHHHh----CCCCcccccc-------c-CCCCC---CCcccc--cc-cCCCChhHHHHHHHHHHHHHhhc----
Q psy12962 1 MSWHVWSWGYG----NPNLLCKINI-------T-IPDLN---TTQEYW--GP-IDPTKSSSYDFVRDLFTEVRSVF---- 58 (75)
Q Consensus 1 ~PGH~~a~~~a----~P~l~~~~~~-------~-~~~~~---~~~~~~--~~-l~~~~~~t~~f~~~v~~ev~~lf---- 58 (75)
||||+.+|+++ ||+|.+.+.. . .|... ...+.+ +. |||.+++||+|+++||+||+++|
T Consensus 422 ~PGH~~a~l~a~~~~YpeL~~~g~~~~~~~~~~~dp~d~s~~~svq~y~~~~~L~p~~~~ty~Fl~~vl~Ev~~lF~~~~ 501 (858)
T 1c7s_A 422 MPAHARAAVVSMEARYKKLHAAGKEQEANEFRLVDQTDTSNTTSVQFFNRQSYLNPCLDSSQRFVDKVIGEIAQMHKEAG 501 (858)
T ss_dssp ESSSCHHHHHHHHHHHHHHHHTTCHHHHHHTCCCCTTCCCCCCCTTSCCGGGSCCTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHhccccChhhhhccCccccccccccCcccccccceecccCCcceecCCChHHHHHHHHHHHHHHHhhhccC
Confidence 79999999987 9999753210 0 01110 001111 35 99999999999999999999999
Q ss_pred -CCCcEEecCCCCC
Q psy12962 59 -HDEFLHTGGDEVD 71 (75)
Q Consensus 59 -~~~~~H~GgDEv~ 71 (75)
|++||||||||+.
T Consensus 502 ~Ps~~iHIGGDEv~ 515 (858)
T 1c7s_A 502 QPIKTWHFGGAEAK 515 (858)
T ss_dssp CCCSCEEEECCCCS
T ss_pred CCCCeEEecCcccc
Confidence 9999999999998
No 12
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}
Probab=95.63 E-value=0.011 Score=45.42 Aligned_cols=31 Identities=3% Similarity=-0.018 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHhhcCCCcEEecCCCCCC
Q psy12962 41 SSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDF 72 (75)
Q Consensus 41 ~~t~~f~~~v~~ev~~lf~~~~~H~GgDEv~~ 72 (75)
+++|+++.+.+.++.+ |..++||||+||+..
T Consensus 241 ~~~~~~l~~~~~~~~~-~g~~~f~ig~DEi~~ 271 (737)
T 2v5d_A 241 EEDFNHLITKAESLYD-MGVRSFAIYWDDIQD 271 (737)
T ss_dssp HHHHHHHHHHHHHHHH-HTCCEEEEECSSCCC
T ss_pred HHHHHHHHHHHHHHHh-cCCcEEEEcCccCCc
Confidence 7899999999999998 889999999999975
No 13
>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil, family 84 glycoside hydrolase, carbohydrate binding module; 2.10A {Clostridium perfringens} PDB: 2cbj_A* 2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A* 2ydr_A* 2ydq_A*
Probab=95.53 E-value=0.014 Score=44.16 Aligned_cols=31 Identities=3% Similarity=-0.018 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHhhcCCCcEEecCCCCCC
Q psy12962 41 SSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDF 72 (75)
Q Consensus 41 ~~t~~f~~~v~~ev~~lf~~~~~H~GgDEv~~ 72 (75)
+++|+.+.+.++++.+ |..++||||+||+..
T Consensus 241 ~~~~~~l~~k~~~l~~-~G~~~f~IG~DEi~~ 271 (594)
T 2v5c_A 241 EEDFNHLITKAESLYD-MGVRSFAIYWDDIQD 271 (594)
T ss_dssp HHHHHHHHHHHHHHHT-TTCCEEEEECSSCSC
T ss_pred HHHHHHHHHHHHHHHh-cCCcEEEecCccCCc
Confidence 6788888888888888 889999999999975
No 14
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide biosynthesis, transferase; HET: UMP CB3; 2.08A {Filobasidiella neoformans}
Probab=66.91 E-value=0.98 Score=31.94 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=28.1
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 38 ~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
|-|-.+|.++..++.++..+=+++|+|.+||
T Consensus 225 PfNiasyalL~~miA~~~gl~~G~f~h~~gd 255 (317)
T 2aaz_A 225 PFNIASYALLTHMIALITDTEPHEFILQMGD 255 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHhCCeeEEEEEEeee
Confidence 4566799999999999999999999999998
No 15
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex, transferase; HET: UMP F89; 1.90A {Pneumocystis carinii} SCOP: d.117.1.1 PDB: 1ci7_A*
Probab=63.90 E-value=0.96 Score=31.69 Aligned_cols=31 Identities=26% Similarity=0.481 Sum_probs=27.8
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 38 ~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
|-|-.+|.++..++.++..+=+++|+|.+||
T Consensus 208 pfNiasyalL~~miA~~~gl~~G~~~h~~gd 238 (297)
T 1f28_A 208 PFNIASYALLTCMIAHVCDLDPGDFIHVMGD 238 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhhHHHHHHHHHHHHHHhCCeeEEEEEEeee
Confidence 3456799999999999999999999999998
No 16
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}
Probab=62.53 E-value=27 Score=27.16 Aligned_cols=34 Identities=9% Similarity=0.151 Sum_probs=27.6
Q ss_pred cccCCCChhHHHHHHHHHHHHHhhcCCCcEEecC
Q psy12962 34 GPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGG 67 (75)
Q Consensus 34 ~~l~~~~~~t~~f~~~v~~ev~~lf~~~~~H~Gg 67 (75)
..||+++|++.+++.++++++..-..-.||++=.
T Consensus 447 ~vLD~tnPevr~~i~~~l~~ll~~~GIDy~K~D~ 480 (745)
T 3mi6_A 447 FVLDMARPEVVDYLFKLMSQMIESANLDYIKWDM 480 (745)
T ss_dssp EEBCTTCHHHHHHHHHHHHHHHHHHTCSEEEECC
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 4699999999999999999988766656666543
No 17
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} SCOP: d.117.1.1
Probab=61.86 E-value=1.4 Score=30.73 Aligned_cols=31 Identities=16% Similarity=0.477 Sum_probs=27.9
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 38 ~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
|-|-.+|.++..++.++..+=+++|+|.+||
T Consensus 185 pfNiasyalL~~miA~~~gl~~G~~~h~~gd 215 (286)
T 1tis_A 185 PFNIASYATLVHIVAKMCNLIPGDLIFSGGN 215 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHHHCCeeEEEEEEEee
Confidence 4566799999999999999999999999997
No 18
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=61.37 E-value=1.4 Score=30.84 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=27.8
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 38 ~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
|-|-.+|.++..++.++..+=+++|+|.+||
T Consensus 206 PfNiasyalL~~miA~~~gl~~G~~~h~~gd 236 (295)
T 3ed7_A 206 PFNIASYALLTYMIAHITGLKPGDFIHTLGD 236 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEEEEEE
T ss_pred hhhHHHHHHHHHHHHHHhCCeeeEEEEEEEE
Confidence 3456699999999999999999999999987
No 19
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=59.77 E-value=1.3 Score=31.10 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=27.7
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 38 ~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
|-|-.+|.++..++.++..+=+++|+|.+||
T Consensus 203 PfNiasyalL~~miA~~~gl~~G~f~h~~gd 233 (294)
T 3kgb_A 203 PFNIASYSLLTILVAHLTGLQPGEFVHFLGD 233 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hccHHHHHHHHHHHHHHhCCeeEEEEEEEEe
Confidence 3456699999999999999999999999997
No 20
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics, seattle S genomics center for infectious disease, transferase; HET: CIT; 1.65A {Burkholderia thailandensis}
Probab=59.73 E-value=1.6 Score=31.01 Aligned_cols=31 Identities=16% Similarity=0.027 Sum_probs=27.9
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 38 ~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
|-|-.+|.++..++.++..+=+++|+|.+||
T Consensus 227 PfNiasyalL~~miA~~~gl~~G~~~h~~gd 257 (327)
T 3v8h_A 227 PFNLAEGAALLTLVGRLTGYSPRWFTYFIGD 257 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEEEEEE
T ss_pred hccHHHHHHHHHHHHHHhCCeeeEEEEEEee
Confidence 3466699999999999999999999999997
No 21
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C*
Probab=58.85 E-value=1.3 Score=31.42 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=27.7
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 38 ~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
|-|-.+|.++..++.++..+=+++|+|.+||
T Consensus 239 PfNiasyalL~~miAq~~Gle~Gefih~igd 269 (328)
T 1j3k_C 239 PFNIASYSIFTHMIAQVCNLQPAQFIHVLGN 269 (328)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHHHCCeeeEEEEEEee
Confidence 4456689999999999999999999999997
No 22
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternar complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ...
Probab=58.28 E-value=1.4 Score=30.34 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=27.7
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 38 ~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
|-|-.+|.++..++.++..+=+++|+|.+||
T Consensus 175 pfNi~syalL~~miA~~~gl~~G~~~h~~gd 205 (264)
T 2g8o_A 175 PFNIASYALLVHMMAQQCDLEVGDFVWTGGD 205 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHHHCCeeeEEEEEEee
Confidence 4566789999999999999999999999997
No 23
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1
Probab=57.96 E-value=1.8 Score=29.88 Aligned_cols=31 Identities=29% Similarity=0.566 Sum_probs=27.7
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 38 ~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
|-|-.+|.++..++.++..+=+++|+|.+||
T Consensus 176 pfNiasyalL~~miA~~~gl~~G~~~h~~gd 206 (264)
T 3qj7_A 176 PFNIASYALLTHMMAAQAGLSVGEFIWTGGD 206 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEEEEEE
T ss_pred hccHHHHHHHHHHHHHhcCCeeeEEEEEEEE
Confidence 3456699999999999999999999999997
No 24
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A*
Probab=57.15 E-value=1.9 Score=29.92 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=27.7
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 38 ~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
|-|-.+|.++..++.++..+=+++|+|.+||
T Consensus 189 pfNi~syalL~~miA~~~gl~~G~~~h~~gd 219 (278)
T 1bkp_A 189 PFNVFQYNVLQRMIAQVTGYELGEYIFNIGD 219 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHhCCeeEEEEEEEEe
Confidence 3466799999999999999999999999997
No 25
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*
Probab=56.86 E-value=27 Score=26.82 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=26.7
Q ss_pred ccCCCChhHHHHHHHHHHHHHhhcCCCcEEec
Q psy12962 35 PIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTG 66 (75)
Q Consensus 35 ~l~~~~~~t~~f~~~v~~ev~~lf~~~~~H~G 66 (75)
.||+++|++.+++.+.+.++..-..-.||++=
T Consensus 447 ~LD~t~Pea~~~~~~~l~~l~~~~GIDy~K~D 478 (720)
T 2yfo_A 447 LLDFSRKEVRDCVFDQICVVLDQGKIDYVKWD 478 (720)
T ss_dssp EBCTTSHHHHHHHHHHHHHHHTTSCCCEEEEC
T ss_pred EECCCCHHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 59999999999999999998876665677654
No 26
>3uwl_A TS, tsase, thymidylate synthase; methyltransferase, transferase; HET: CME FOZ; 2.07A {Enterococcus faecalis} PDB: 3ik0_A* 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 2g86_A* ...
Probab=55.98 E-value=1.6 Score=30.74 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=27.4
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 39 TKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 39 ~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
-|-.+|.++..++.++..+=|++|+|..||
T Consensus 227 fNiasyalL~~miA~~~gl~~G~~~h~~gd 256 (315)
T 3uwl_A 227 FNIASYALLTHLIAHETGLEVGEFVHTLGD 256 (315)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCccceEEEEeee
Confidence 456799999999999999999999999998
No 27
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A*
Probab=54.26 E-value=1.8 Score=31.13 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=27.8
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 38 ~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
|-|-.+|.++..++.++..+=+++|+|.+||
T Consensus 266 PfNIasyalLt~miAq~~Gle~Gefvhtigd 296 (355)
T 1hw4_A 266 PFNIASYALLTYMIAHITGLKPGDFIHTLGD 296 (355)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHHHCCeeEEEEEEEEE
Confidence 4556799999999999999999999999998
No 28
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: UMP; 2.71A {Staphylococcus aureus}
Probab=51.97 E-value=2 Score=30.43 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=27.4
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 38 ~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
|-|-.+|.++..++.++..+=+++|+|.+||
T Consensus 233 PfNiasyalL~~miAq~~Gl~~G~fih~~gd 263 (321)
T 4dq1_A 233 PFNIASYALLTHLIAKECGLEVGEFVHTFGD 263 (321)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hccHHHHHHHHHHHHHHhCCcceEEEEEEEE
Confidence 3456689999999999999999999999987
No 29
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=51.33 E-value=2.7 Score=30.18 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=27.9
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 38 ~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
|-|-.+|.++..++.++..+=+++|+|.+||
T Consensus 271 pfNiasyalL~~miA~~~gl~~G~~~h~~gd 301 (360)
T 3ix6_A 271 PFNIASYALLTMMIAQVTGLKPGEFIHTLGD 301 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHhCCcceEEEEEEee
Confidence 4566799999999999999999999999987
No 30
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=49.81 E-value=9.3 Score=21.10 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHhhc---C-CCcEEecCCC
Q psy12962 42 SSYDFVRDLFTEVRSVF---H-DEFLHTGGDE 69 (75)
Q Consensus 42 ~t~~f~~~v~~ev~~lf---~-~~~~H~GgDE 69 (75)
++-+.+..++.++..+= + +.||.+|||-
T Consensus 16 ~~e~~l~~i~~~vL~~~~i~~~~~Ff~lGgdS 47 (93)
T 4i4d_A 16 ALERDIAAIWAETLGRDSVGPHEDFAALGGNS 47 (93)
T ss_dssp HHHHHHHHHHHHHHTCSCCCTTCCTTTTTCCH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCHHHcCCcH
Confidence 45566777888887652 2 4799999984
No 31
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=48.42 E-value=3.2 Score=31.12 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=27.8
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 38 ~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
|-|-.+|.++..++.++..+=+++|+|.+||
T Consensus 432 pfNiasyalL~~miA~~~gl~~G~~~h~~gd 462 (521)
T 3hj3_A 432 PFNIASYAILTMMLAQVCGYEPGELAIFIGD 462 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEEEEEE
T ss_pred cccHHHHHHHHHHHHHHhCCcceEEEEEeee
Confidence 3456699999999999999999999999997
No 32
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=44.70 E-value=3.1 Score=31.14 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=27.6
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 38 ~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
|-|-.+|.++..++.++..+=+++|+|.+||
T Consensus 432 pfNiasyalL~~miA~~~gl~~G~~~h~~gd 462 (521)
T 3irm_A 432 PFNIASYALLTILIAKATGLRPGELVHTLGD 462 (521)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cccHHHHHHHHHHHHHHhCCcceEEEEEEEE
Confidence 3456699999999999999999999999998
No 33
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=43.27 E-value=3.4 Score=30.91 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=27.5
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 38 ~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
|-|-.+|.++..++.++..+=+++|+|.+||
T Consensus 426 pfNiasyalL~~miA~~~gl~~G~~~h~~gd 456 (515)
T 3nrr_A 426 PFNIASYSILTAMVAQVCGLGLGEFVHNLAD 456 (515)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hccHHHHHHHHHHHHHHhCCeeeEEEEEEEe
Confidence 3456689999999999999999999999997
No 34
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Probab=43.11 E-value=1.9 Score=29.22 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=25.9
Q ss_pred CChh-----HHHHHHHHHHHH--HhhcCCCcEEecCC
Q psy12962 39 TKSS-----SYDFVRDLFTEV--RSVFHDEFLHTGGD 68 (75)
Q Consensus 39 ~~~~-----t~~f~~~v~~ev--~~lf~~~~~H~GgD 68 (75)
.|-. +|.++..++.++ ..+=+++|+|.+||
T Consensus 178 fNi~~~~~~syalL~~miA~~~~~gl~~G~~~h~~gd 214 (246)
T 1b5e_A 178 NDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIWNVGS 214 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEEEEE
T ss_pred chHHHhhhHHHHHHHHHHhhhhccCCceeEEEEEEEe
Confidence 4566 888899999999 88889999999987
No 35
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=42.86 E-value=22 Score=17.83 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhcCCCcEE
Q psy12962 44 YDFVRDLFTEVRSVFHDEFLH 64 (75)
Q Consensus 44 ~~f~~~v~~ev~~lf~~~~~H 64 (75)
+.+...++-|+.+.||+-.+|
T Consensus 19 ~~~tAg~lIEiNRffPD~L~~ 39 (41)
T 1jb0_J 19 MTITAGILIEFNRFYPDLLFH 39 (41)
T ss_dssp HHHHHHHHHHHHHHSCCCSSC
T ss_pred HHHHHHHHHHHHHhCcccccC
Confidence 356678899999999997655
No 36
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A*
Probab=40.53 E-value=4 Score=31.22 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=27.6
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcEEecCC
Q psy12962 38 PTKSSSYDFVRDLFTEVRSVFHDEFLHTGGD 68 (75)
Q Consensus 38 ~~~~~t~~f~~~v~~ev~~lf~~~~~H~GgD 68 (75)
|-|-.+|.++..++.++..+=+++|+|.+||
T Consensus 519 PfNiasyalL~~miA~~~gl~~G~fih~~gd 549 (608)
T 3qg2_A 519 PFNIASYSIFTHMIAQVCNLQPAQFIHVLGN 549 (608)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hccHHHHHHHHHHHHHHhCCeeeEEEEEeee
Confidence 3456699999999999999999999999997
No 37
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=40.48 E-value=21 Score=19.65 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=21.5
Q ss_pred ChhHHHHHHHHHHHHHhhc---C-CCcEEecCCC
Q psy12962 40 KSSSYDFVRDLFTEVRSVF---H-DEFLHTGGDE 69 (75)
Q Consensus 40 ~~~t~~f~~~v~~ev~~lf---~-~~~~H~GgDE 69 (75)
..++-+.+.+++.++..+= + +.||-+|||-
T Consensus 12 ~~~~e~~l~~i~~~vL~~~~i~~~~~Ff~lGgdS 45 (91)
T 1dny_A 12 TNAVESKLAEIWERVLGVSGIGILDNFFQIGGHS 45 (91)
T ss_dssp SSHHHHHHHHHHHHHHTCSSCCSSCCTTSSCCSS
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCCHHHcCCCH
Confidence 4456677778888888652 2 4789999985
No 38
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=38.34 E-value=22 Score=21.06 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHhhcC
Q psy12962 42 SSYDFVRDLFTEVRSVFH 59 (75)
Q Consensus 42 ~t~~f~~~v~~ev~~lf~ 59 (75)
.--.|+.+|+.||+.+-|
T Consensus 35 K~tkfVrdiIrEV~GfaP 52 (100)
T 3izc_k 35 NRTKFVRSLVREIAGLSP 52 (100)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHhcCch
Confidence 346899999999999888
No 39
>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A*
Probab=37.85 E-value=1.3e+02 Score=22.99 Aligned_cols=34 Identities=3% Similarity=0.004 Sum_probs=26.1
Q ss_pred cccCCCChhHHHHHHHHHHHHHhhcCCCcEEecC
Q psy12962 34 GPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGG 67 (75)
Q Consensus 34 ~~l~~~~~~t~~f~~~v~~ev~~lf~~~~~H~Gg 67 (75)
..||+++|++.+++.+.+.++..-..-.||.+-.
T Consensus 450 ~~LD~t~Pev~~~i~~~l~~~~~~~GVD~~K~D~ 483 (732)
T 2xn2_A 450 YVLELGRKEVRDNIFEQMVKILDSKKIDYIKWDM 483 (732)
T ss_dssp EEBCTTSHHHHHHHHHHHHHHHTTSCCCEEEECC
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 3599999999999888888877655556666544
No 40
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=37.32 E-value=27 Score=21.77 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=15.3
Q ss_pred HHHHHHHH----hhcC--CCcEEecCCCC
Q psy12962 48 RDLFTEVR----SVFH--DEFLHTGGDEV 70 (75)
Q Consensus 48 ~~v~~ev~----~lf~--~~~~H~GgDEv 70 (75)
+.||.+++ +.++ +....+||||+
T Consensus 57 D~vL~~va~~L~~~~~~~~~v~R~gGDEF 85 (179)
T 3tvk_A 57 DVVLRTLATYLASWTRDYETVYRYGGEEF 85 (179)
T ss_dssp HHHHHHHHHHHHHTSCTTSCEEECSSSEE
T ss_pred HHHHHHHHHHhHhcCCcccEEEEccCCEE
Confidence 45555555 4555 35799999996
No 41
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*
Probab=32.28 E-value=1e+02 Score=23.58 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=22.9
Q ss_pred ccCCCChhHHHHHHHHHHHHHhhcCCCcE
Q psy12962 35 PIDPTKSSSYDFVRDLFTEVRSVFHDEFL 63 (75)
Q Consensus 35 ~l~~~~~~t~~f~~~v~~ev~~lf~~~~~ 63 (75)
.||+.+|++.+++.+.+..+.+-..-.||
T Consensus 447 ~LD~~~P~v~~y~~~~i~~ll~~~GidYi 475 (729)
T 4fnq_A 447 VLDYSREDVCDYIIETISNVLASAPITYV 475 (729)
T ss_dssp EBCTTSHHHHHHHHHHHHHHHTTTTCCEE
T ss_pred cccCCChhHHHHHHHHHHHHHHHCCCCEE
Confidence 69999999999998888887765554444
No 42
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=29.37 E-value=36 Score=18.84 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhcCC
Q psy12962 47 VRDLFTEVRSVFHD 60 (75)
Q Consensus 47 ~~~v~~ev~~lf~~ 60 (75)
+.+.+.+|.++||+
T Consensus 13 l~s~I~qV~DLfPd 26 (71)
T 2di0_A 13 LDSLISQVKDLLPD 26 (71)
T ss_dssp HHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHccc
Confidence 45788999999995
No 43
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=27.88 E-value=39 Score=17.74 Aligned_cols=13 Identities=23% Similarity=0.639 Sum_probs=10.7
Q ss_pred HHHHHHHHhhcCC
Q psy12962 48 RDLFTEVRSVFHD 60 (75)
Q Consensus 48 ~~v~~ev~~lf~~ 60 (75)
++.++++.++||+
T Consensus 13 ~~~~~~L~~MFP~ 25 (54)
T 1p3q_Q 13 KDTLNTLQNMFPD 25 (54)
T ss_dssp HHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccc
Confidence 4678899999994
No 44
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=27.26 E-value=23 Score=21.16 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHhhcC
Q psy12962 42 SSYDFVRDLFTEVRSVFH 59 (75)
Q Consensus 42 ~t~~f~~~v~~ev~~lf~ 59 (75)
.--.|+.+|+.||+.+-|
T Consensus 36 K~tkfVrdiIrEV~GfaP 53 (104)
T 4a18_Q 36 KRVALVRQVIREVTGFAP 53 (104)
T ss_dssp HHHHHHHHHHHHHHCCCH
T ss_pred chHHHHHHHHHHHhcCch
Confidence 457899999999998765
No 45
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV}
Probab=26.49 E-value=34 Score=19.90 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=16.5
Q ss_pred HHHHHHHHHHh----hcCC--CcEEecCCCC
Q psy12962 46 FVRDLFTEVRS----VFHD--EFLHTGGDEV 70 (75)
Q Consensus 46 f~~~v~~ev~~----lf~~--~~~H~GgDEv 70 (75)
.-+.++.+++. .++. ...++||||+
T Consensus 64 ~gd~~L~~ia~~L~~~~~~~~~~~R~~~deF 94 (167)
T 3qyy_A 64 AGDRVLVRLVESAYGWLGAQDWIGRWGGDEF 94 (167)
T ss_dssp HHHHHHHHHHHHHTTTCCTTCEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEeecCceE
Confidence 44566666664 4442 4679999996
No 46
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=25.73 E-value=67 Score=19.69 Aligned_cols=22 Identities=14% Similarity=0.236 Sum_probs=19.1
Q ss_pred ccCCCChhHHHHHHHHHHHHHh
Q psy12962 35 PIDPTKSSSYDFVRDLFTEVRS 56 (75)
Q Consensus 35 ~l~~~~~~t~~f~~~v~~ev~~ 56 (75)
.+||.+|.+.+++..|+.++..
T Consensus 85 aid~~dp~i~~~~p~Il~~l~~ 106 (139)
T 2vxg_A 85 AINMADPITREHAPKVLTELYR 106 (139)
T ss_dssp HCCTTSHHHHHHHHHHHHHHHH
T ss_pred HcCCCCchHHHHHHHHHHHHHH
Confidence 5999999999999999888764
No 47
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=25.55 E-value=64 Score=20.09 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=21.7
Q ss_pred ccCCCChhHHHHHHHHHHHHHhhcC
Q psy12962 35 PIDPTKSSSYDFVRDLFTEVRSVFH 59 (75)
Q Consensus 35 ~l~~~~~~t~~f~~~v~~ev~~lf~ 59 (75)
-++-..|++..|+++|+..+..+|.
T Consensus 76 Ki~~L~Peak~Fv~kli~~~r~l~~ 100 (140)
T 2w9y_A 76 RLDGLSPAAVEYAKKLIHMVTTTLC 100 (140)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3788899999999999999888775
No 48
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13
Probab=24.45 E-value=96 Score=23.02 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=24.2
Q ss_pred cccCCCChhHHHHHHHHHHHHHhhcCCCcEEe
Q psy12962 34 GPIDPTKSSSYDFVRDLFTEVRSVFHDEFLHT 65 (75)
Q Consensus 34 ~~l~~~~~~t~~f~~~v~~ev~~lf~~~~~H~ 65 (75)
..||+++|++.+++.+.++++ .-..-.||.+
T Consensus 308 ~~lD~t~P~a~~~~~~~~~~~-~~~GVD~iK~ 338 (564)
T 1zy9_A 308 YALDLSKDEVLNWLFDLFSSL-RKMGYRYFKI 338 (564)
T ss_dssp EEBCTTCHHHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred eecCCCCHHHHHHHHHHHHHH-HhcCCCEEEE
Confidence 369999999999999999999 4444445554
No 49
>4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4 carbohydrate esterase, TIM barrel, hydrolase, deace carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia coli} PDB: 4f9j_A*
Probab=24.09 E-value=52 Score=24.99 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=22.8
Q ss_pred ccccCCCChhHHHHHHHHHHHHHhh
Q psy12962 33 WGPIDPTKSSSYDFVRDLFTEVRSV 57 (75)
Q Consensus 33 ~~~l~~~~~~t~~f~~~v~~ev~~l 57 (75)
+--|+|-++++.+.+++|+++|+.-
T Consensus 395 ~~~lsp~~~~~~~~~~~iy~dl~~~ 419 (618)
T 4f9d_A 395 YHRLSPFDDRVRAQVGMLYEDLAGH 419 (618)
T ss_dssp GGCBCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHHHhh
Confidence 3469999999999999999999986
No 50
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2, protein structure initiative; 2.24A {Caldicellulosiruptor saccharolyticus}
Probab=23.94 E-value=47 Score=19.65 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=14.9
Q ss_pred HHHHHHHHH----hhcC--CCcEEecCCCC
Q psy12962 47 VRDLFTEVR----SVFH--DEFLHTGGDEV 70 (75)
Q Consensus 47 ~~~v~~ev~----~lf~--~~~~H~GgDEv 70 (75)
-+.++.+++ ..++ +...++||||+
T Consensus 59 gd~lL~~ia~~L~~~~~~~~~~~R~~~d~F 88 (178)
T 3mtk_A 59 VDELIIHISKRIKDIAGEGNKAFKIGFDRF 88 (178)
T ss_dssp HHHHHHHHHHHHHHHHCSSSEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEecCCEE
Confidence 345555554 4444 24789999996
No 51
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=23.74 E-value=61 Score=18.73 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=15.7
Q ss_pred HHHHHHHHHH----hhcCC--CcEEecCCCC
Q psy12962 46 FVRDLFTEVR----SVFHD--EFLHTGGDEV 70 (75)
Q Consensus 46 f~~~v~~ev~----~lf~~--~~~H~GgDEv 70 (75)
.-+.++.+++ ..++. ...++||||+
T Consensus 52 ~gd~~L~~~a~~L~~~~~~~~~~~R~~~d~F 82 (171)
T 3icl_A 52 VGDRLLRATAERIRTAVRDGDTVARIGGDKF 82 (171)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCEEEEETTTEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEecCCEE
Confidence 3445555555 45553 4789999986
No 52
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=23.73 E-value=52 Score=19.50 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=15.2
Q ss_pred HHHHHHHHH----hhcC-CCcEEecCCCC
Q psy12962 47 VRDLFTEVR----SVFH-DEFLHTGGDEV 70 (75)
Q Consensus 47 ~~~v~~ev~----~lf~-~~~~H~GgDEv 70 (75)
-+.++.+++ ..++ +...++||||+
T Consensus 53 gD~~L~~ia~~L~~~~~~~~v~R~~~deF 81 (176)
T 3hvw_A 53 SNDLMLEARDRIRAELPDFTLYKISPTRF 81 (176)
T ss_dssp HHHHHHHHHHHHHHHCTTSCEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEecCCEE
Confidence 344455554 3444 56789999996
No 53
>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.17 E-value=17 Score=21.51 Aligned_cols=35 Identities=17% Similarity=0.443 Sum_probs=23.4
Q ss_pred cCCCChhHHHHHHHHHHHHHh-hc---C-CCcEEecCCCC
Q psy12962 36 IDPTKSSSYDFVRDLFTEVRS-VF---H-DEFLHTGGDEV 70 (75)
Q Consensus 36 l~~~~~~t~~f~~~v~~ev~~-lf---~-~~~~H~GgDEv 70 (75)
|.....++-..+..|..+|.. .- + +.||.+||+-.
T Consensus 19 lt~~~~~~E~~La~iW~~vL~~~~~i~~~ddFF~lGG~SL 58 (110)
T 2cq8_A 19 LTEAELVTAEAVRSVWQRILPKVLEVEDSTDFFKSGAASV 58 (110)
T ss_dssp CCTTHHHHHHHHHHHHHHHCSSCSCCCTTCBHHHHHCCTT
T ss_pred hcCcchHHHHHHHHHHHHHhCCCCCCCCCCCHHhcCChHH
Confidence 333334566777888888876 32 2 57999999853
No 54
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=22.17 E-value=54 Score=19.16 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=15.7
Q ss_pred HHHHHHHHHHh----hcCC--CcEEecCCCC
Q psy12962 46 FVRDLFTEVRS----VFHD--EFLHTGGDEV 70 (75)
Q Consensus 46 f~~~v~~ev~~----lf~~--~~~H~GgDEv 70 (75)
.-+.++.+++. .++. ...++||||+
T Consensus 61 ~gd~~L~~ia~~L~~~~~~~~~~~R~~~d~F 91 (177)
T 3ign_A 61 AGDEVIRHTADVTRNNIRQSDSAGRYGGEEF 91 (177)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSEEEECSSSEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEecCCeE
Confidence 33455555554 4553 4679999986
No 55
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=22.15 E-value=85 Score=15.56 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=13.7
Q ss_pred CChhHHHHHHHHHHHHH
Q psy12962 39 TKSSSYDFVRDLFTEVR 55 (75)
Q Consensus 39 ~~~~t~~f~~~v~~ev~ 55 (75)
..++|..++++|+.+..
T Consensus 19 P~~ETv~llEeiV~~~i 35 (45)
T 1bh9_A 19 PYTESVDILEDLVIEFI 35 (45)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 47899999999977654
Done!