RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12962
(75 letters)
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer,
family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A*
2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Length = 507
Score = 79.0 bits (195), Expect = 2e-19
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 4 HVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFL 63
H SWG G +LL + +GPI+PT +++Y F+ F E+ VF D+F+
Sbjct: 245 HTLSWGKGQKDLLT----PCYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEVFPDQFI 300
Query: 64 HTGGDEVDFYCW 75
H GGDEV+F CW
Sbjct: 301 HLGGDEVEFKCW 312
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A,
glycosidase, TAY-sachs disease, GM2 ganglisode, TIM
barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Length = 507
Score = 75.2 bits (185), Expect = 4e-18
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 4 HVWSWGYGNPNLLCKINITIPDLNTTQEYWG---PIDPTKSSSYDFVRDLFTEVRSVFHD 60
H SWG G P LL + E G P++P+ +++Y+F+ F EV SVF D
Sbjct: 240 HTLSWGPGIPGLLT-------PCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFPD 292
Query: 61 EFLHTGGDEVDFYCW 75
+LH GGDEVDF CW
Sbjct: 293 FYLHLGGDEVDFTCW 307
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Length = 543
Score = 70.1 bits (172), Expect = 3e-16
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 4 HVWSWGYGNPNLLCKINITIPDLNTTQEYWG---PIDPTKSSSYDFVRDLFTEVRSVFHD 60
H + P L + WG + +S +F R++ EV +F
Sbjct: 249 HSQAAIAAYPELGAGPADGSSPVEV-WTRWGINETVLEVSETSLEFYRNVLDEVVEIFPS 307
Query: 61 EFLHTGGDEVDFYCW 75
++ GGDEV W
Sbjct: 308 PWISLGGDEVPLTQW 322
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase,
hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia
furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A*
Length = 572
Score = 69.5 bits (170), Expect = 6e-16
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 4 HVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVF-HDEF 62
HV +C + G ++PTK Y ++ D+++++ VF +
Sbjct: 281 HVGEGWQDTDLTVC-FKAEPWKSYCVEPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDI 339
Query: 63 LHTGGDEVDFYCW 75
H GGDEV CW
Sbjct: 340 FHMGGDEVSEACW 352
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase,
glycosphingolipids, paenibacill GH20, hydrolase,
structural genomics, NPPSFA; HET: NAG; 1.60A
{Paenibacillus SP} PDB: 3gh4_A* 3gh7_A*
Length = 525
Score = 68.2 bits (167), Expect = 1e-15
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 4 HVWSWGYGNPNLLCKINITIPDLNTTQEY-WGPIDPTKSSSYDFVRDLFTEVRSVFHDEF 62
H + L + + T + + P +Y FV D+ +E+ ++ +
Sbjct: 281 HTNAALASYGELNP--DGKRKAMRTDTAVGYSTLMPRAEITYQFVEDVISELAAISPSPY 338
Query: 63 LHTGGDEVDFYCW 75
+H GGDE +
Sbjct: 339 IHLGGDESNATSA 351
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20,
substrate-assisted catalysis, alpha/beta barrel,
isofagomin inhibitor complex; HET: IFG; 1.75A
{Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB:
1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Length = 512
Score = 62.0 bits (151), Expect = 2e-13
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 4 HVWSWGYGNPNLLCKINITIPDLNTTQEY-WGPIDPTKSSSYDFVRDLFTEVRSVFHDEF 62
H + L C + P L T + + + K +YDFV D+ E+ ++ +
Sbjct: 256 HTNAALASYAELNC--DGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRY 313
Query: 63 LHTGGDEVDFYCW 75
LH GGDE
Sbjct: 314 LHIGGDEAHSTPK 326
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter
actinomycetemcomitans} SCOP: c.1.8.6
Length = 367
Score = 59.4 bits (144), Expect = 2e-12
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 4 HVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHD--E 61
H+ + +++ ID T + S F++ L +EV +F D +
Sbjct: 120 HMTAIFKLVQKDRGV---KYLQGLKSRQVDDEIDITNADSITFMQSLMSEVIDIFGDTSQ 176
Query: 62 FLHTGGDEVDFYCW 75
H GGDE +
Sbjct: 177 HFHIGGDEFGYSVE 190
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET:
ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A*
2yl8_A* 3rpm_A*
Length = 434
Score = 51.0 bits (122), Expect = 2e-09
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 7/75 (9%)
Query: 4 HVWSWGYGNPNLLCKINITIPDLNTTQEYW-GPIDPTKSSSYDFVRDLFTEVRSVFHD-- 60
H+ + L P+ + + +D + F + L + + F
Sbjct: 117 HMDAILNAMKELGI----QNPNFSYFGKKSARTVDLDNEQAVAFTKALIDKYAAYFAKKT 172
Query: 61 EFLHTGGDEVDFYCW 75
E + G DE
Sbjct: 173 EIFNIGLDEYANDAT 187
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus
pneumoniae} PDB: 2yla_A* 2yl9_A*
Length = 442
Score = 49.5 bits (118), Expect = 5e-09
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 6/74 (8%)
Query: 4 HVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVF--HDE 61
H+ + L P + + +D + +FV+ L + F +
Sbjct: 120 HMDAMLVAMEKLGI----KNPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTK 175
Query: 62 FLHTGGDEVDFYCW 75
+ G DE
Sbjct: 176 IFNFGTDEYANDAT 189
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20,
GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X
2epm_X 2epn_A* 2epo_A
Length = 627
Score = 44.6 bits (105), Expect = 3e-07
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 36 IDPTKSSSYDFVRDLFTEVRSVFHDEFLHTGGDEVDFYCW 75
+ + YD + +F + + H ++ G DE
Sbjct: 192 LLIGEEKVYDLIEGMFQTM-AHLHTRKINIGMDEAHLVGL 230
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis,
A/B(TIM)-barrel, site directed mutagenesis; HET: CBS;
1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3
c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Length = 858
Score = 40.9 bits (95), Expect = 8e-06
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 35 PIDPTKSSSYDFVRDLFTEVRSVFHD-----EFLHTGGDEVDFYCW 75
++P SS FV + E+ + + + H GG E
Sbjct: 474 YLNPCLDSSQRFVDKVIGEIAQMHKEAGQPIKTWHFGGAEAKNIRL 519
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP:
c.94.1.1
Length = 310
Score = 28.4 bits (63), Expect = 0.18
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 42 SSYDFVRDLFTEVRSVFHDEFLHTGGDEVDF 72
SYD R+L+ + F + GD V
Sbjct: 8 VSYDPTRELYEQYNKAFSAHWKQETGDNVVI 38
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 0.87
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 11 GNPNLLCKINITIPDLNTTQEYWGPIDPTK-----SSSYDF-----VRDLFTEVRSVFHD 60
NP L I +I D T + W ++ K SS + R +F + SVF
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPP 383
Query: 61 E 61
Sbjct: 384 S 384
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase,
primase, NHEJ, transferase; 1.65A {Mycobacterium
tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Length = 303
Score = 24.0 bits (52), Expect = 6.6
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 3 WHVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHD 60
HV W + ++N +DP + + ++ VR + D
Sbjct: 113 VHVPQWRFVAEPGSGELNPGPAT-----RLVFDLDPGEGVMMAQLAEVARAVRDLLAD 165
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.509
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,275,979
Number of extensions: 58048
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 16
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)