RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12962
         (75 letters)



>d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 362

 Score = 45.9 bits (108), Expect = 4e-08
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 4   HVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFL 63
           H  SWG G P LL          +     +GP++P+ +++Y+F+   F EV SVF D +L
Sbjct: 96  HTLSWGPGIPGLLTPCY----SGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFPDFYL 151

Query: 64  HTGGDEVDFYCW 75
           H GGDEVDF CW
Sbjct: 152 HLGGDEVDFTCW 163


>d1nowa1 c.1.8.6 (A:200-552) beta-hexosaminidase B {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 353

 Score = 44.8 bits (105), Expect = 1e-07
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 4   HVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHDEFL 63
           H  SWG G  +LL         L++    +GPI+PT +++Y F+   F E+  VF D+F+
Sbjct: 95  HTLSWGKGQKDLLTPCYSRQNKLDS----FGPINPTLNTTYSFLTTFFKEISEVFPDQFI 150

Query: 64  HTGGDEVDFYCW 75
           H GGDEV+F CW
Sbjct: 151 HLGGDEVEFKCW 162


>d1qbaa3 c.1.8.6 (A:338-780) Bacterial chitobiase
           (beta-N-acetylhexosaminidase) {Serratia marcescens
           [TaxId: 615]}
          Length = 443

 Score = 34.5 bits (78), Expect = 4e-04
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 5/51 (9%)

Query: 30  QEYWGPIDPTKSSSYDFVRDLFTEVRSVF-----HDEFLHTGGDEVDFYCW 75
                 ++P   SS  FV  +  E+  +        +  H GGDE      
Sbjct: 159 FNRQSYLNPCLDSSQRFVDKVIGEIAQMHKEAGQPIKTWHFGGDEAKNIRL 209


>d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus
           actinomycetemcomitans [TaxId: 714]}
          Length = 344

 Score = 34.0 bits (77), Expect = 6e-04
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 1   MSWHVWSWGYGNPNLLCKINITIPDLNTTQEYWGPIDPTKSSSYDFVRDLFTEVRSVFHD 60
              H+ +                     +++    ID T + S  F++ L +EV  +F D
Sbjct: 102 SPNHMTAIFKLVQKDRGV---KYLQGLKSRQVDDEIDITNADSITFMQSLMSEVIDIFGD 158

Query: 61  --EFLHTGGDEVDFYCW 75
             +  H GGDE  +   
Sbjct: 159 TSQHFHIGGDEFGYSVE 175


>d1sbpa_ c.94.1.1 (A:) Sulphate-binding protein {Salmonella
          typhimurium [TaxId: 90371]}
          Length = 309

 Score = 27.9 bits (61), Expect = 0.093
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 43 SYDFVRDLFTEVRSVFHDEFLHTGGDEVDF 72
          SYD  R+L+ +    F   +    GD V  
Sbjct: 9  SYDPTRELYEQYNKAFSAHWKQETGDNVVI 38


>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio
           cholerae [TaxId: 666]}
          Length = 191

 Score = 22.1 bits (46), Expect = 8.7
 Identities = 4/29 (13%), Positives = 8/29 (27%)

Query: 2   SWHVWSWGYGNPNLLCKINITIPDLNTTQ 30
           +  +     G    L  + I +P      
Sbjct: 141 TIALTGKDGGKMAGLADVEIRVPHFGYAD 169


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.141    0.509 

Gapped
Lambda     K      H
   0.267   0.0663    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 343,175
Number of extensions: 13214
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 10
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)