Query psy12964
Match_columns 156
No_of_seqs 163 out of 1202
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 15:37:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01378 MYSc_type_I Myosin mot 100.0 9.9E-35 2.1E-39 266.6 9.3 134 11-151 483-625 (674)
2 cd01384 MYSc_type_XI Myosin mo 100.0 1.6E-34 3.5E-39 265.2 9.3 135 11-151 482-625 (674)
3 PTZ00014 myosin-A; Provisional 100.0 1.8E-34 3.9E-39 269.1 9.6 130 11-146 578-710 (821)
4 cd01382 MYSc_type_VI Myosin mo 100.0 2.5E-34 5.4E-39 265.5 10.1 135 12-147 523-660 (717)
5 cd01380 MYSc_type_V Myosin mot 100.0 2.6E-34 5.7E-39 264.4 9.0 140 11-151 484-644 (691)
6 COG5022 Myosin heavy chain [Cy 100.0 2.3E-34 5E-39 274.5 8.5 127 11-144 546-675 (1463)
7 cd01377 MYSc_type_II Myosin mo 100.0 5.8E-34 1.3E-38 262.2 9.8 142 11-153 492-647 (693)
8 cd01381 MYSc_type_VII Myosin m 100.0 1.1E-33 2.3E-38 259.7 9.6 139 11-154 478-625 (671)
9 cd01387 MYSc_type_XV Myosin mo 100.0 1.6E-33 3.6E-38 258.7 9.8 138 12-150 477-629 (677)
10 cd01385 MYSc_type_IX Myosin mo 100.0 3.2E-33 7E-38 257.2 9.8 134 12-146 493-633 (692)
11 smart00242 MYSc Myosin. Large 100.0 6.8E-33 1.5E-37 254.6 9.8 128 11-144 485-615 (677)
12 cd00124 MYSc Myosin motor doma 100.0 7.5E-33 1.6E-37 254.3 10.0 140 11-151 478-632 (679)
13 cd01383 MYSc_type_VIII Myosin 100.0 9.5E-33 2.1E-37 253.6 8.8 140 12-153 479-633 (677)
14 cd01386 MYSc_type_XVIII Myosin 100.0 3.6E-32 7.8E-37 252.5 9.1 142 12-154 516-717 (767)
15 cd01379 MYSc_type_III Myosin m 100.0 2.7E-31 5.9E-36 243.2 9.6 115 12-152 488-609 (653)
16 KOG0164|consensus 100.0 4.2E-30 9.2E-35 233.2 10.2 147 4-155 489-646 (1001)
17 PF00063 Myosin_head: Myosin h 100.0 7.4E-31 1.6E-35 240.7 5.1 142 10-152 484-650 (689)
18 KOG0162|consensus 100.0 2.3E-30 5E-35 235.4 7.0 138 11-155 500-646 (1106)
19 KOG0161|consensus 100.0 6.6E-30 1.4E-34 251.4 7.9 134 9-143 564-706 (1930)
20 KOG0163|consensus 99.9 5E-26 1.1E-30 207.8 8.6 135 12-148 577-714 (1259)
21 KOG0160|consensus 99.9 3E-25 6.5E-30 206.6 3.5 127 14-146 485-614 (862)
22 KOG4229|consensus 97.7 7.4E-06 1.6E-10 79.3 0.1 127 15-142 547-711 (1062)
23 KOG4229|consensus 75.6 0.47 1E-05 46.9 -1.9 69 75-143 789-858 (1062)
24 PF03338 Pox_J1: Poxvirus J1 p 38.1 55 0.0012 25.3 3.9 57 50-109 79-135 (145)
25 PHA01080 hypothetical protein 28.5 35 0.00076 23.7 1.3 19 10-28 1-19 (80)
26 KOG4423|consensus 23.5 53 0.0011 27.0 1.7 43 10-55 159-204 (229)
27 COG4899 Uncharacterized protei 22.4 38 0.00083 26.4 0.7 14 96-109 48-61 (166)
No 1
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=9.9e-35 Score=266.64 Aligned_cols=134 Identities=24% Similarity=0.320 Sum_probs=117.0
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCccccccccCCccchHHHHHHHHHHH
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTVGLASQSRSQQTAATYFRYSLMEL 88 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~~~~~~~~~~~TV~skFr~~L~~L 88 (156)
..+.-.|++|.|.|++.+|||||||.+++++ +.++.+| ++|++||++.... .++++.+||+++|+.||++|
T Consensus 483 ~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~-~~ll~~S~n~~i~~lf~~~~~~------~~~~~~~tv~~~fk~qL~~L 555 (674)
T cd01378 483 DEFRIKHYAGDVTYSVEGFCDKNKDTLFKDL-IELMQSSSNPFLRSLFPEKSDA------DSKKRPTTAGFKIKTSANAL 555 (674)
T ss_pred CcEEEEEeceeeeecCcCHHHhhcchhhHHH-HHHHHhCchHHHHHHhcccccc------cccCCCCcHHHHHHHHHHHH
Confidence 4677889999999999999999999999999 7888777 8999999854321 12345689999999999999
Q ss_pred HHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHH------HHHHHhhh
Q psy12964 89 LQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCA------ILSLKLLR 151 (156)
Q Consensus 89 m~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~------~~~~~~~~ 151 (156)
|++|++|+||||||||||+.++|+.||..+|++||||+||+|+++|++ |||.|++ +|+++.-.
T Consensus 556 m~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~ 625 (674)
T cd01378 556 VETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPK 625 (674)
T ss_pred HHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999999999999999999 9997554 56655443
No 2
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.6e-34 Score=265.16 Aligned_cols=135 Identities=19% Similarity=0.276 Sum_probs=117.1
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCccccccccCCccchHHHHHHHHHHH
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTVGLASQSRSQQTAATYFRYSLMEL 88 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~~~~~~~~~~~TV~skFr~~L~~L 88 (156)
..+.-.|++|.|.|++.+|||||||.|++++ +.++.+| ++|++||+...... +++.+..||+++|+.||+.|
T Consensus 482 ~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~-~~ll~~S~n~~i~~lf~~~~~~~-----~~~~k~~tv~~~fk~~L~~L 555 (674)
T cd01384 482 TAFTIDHYAGDVTYQTDQFLDKNKDYVVAEH-QALLNASNCSFVAGLFPPLPEET-----SKSSKFSSIGSRFKQQLQSL 555 (674)
T ss_pred CeeEEEEecceeeecCCCHHHhcCCcccHHH-HHHHHhCchHHHHHHhccccccc-----ccccccccHHHHHHHHHHHH
Confidence 3567778999999999999999999999999 7888777 89999998644221 23456789999999999999
Q ss_pred HHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHH------HHHHHhhh
Q psy12964 89 LQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCA------ILSLKLLR 151 (156)
Q Consensus 89 m~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~------~~~~~~~~ 151 (156)
|++|++|+||||||||||+.|+|+.||...|++||||+||+|++||++ |||+|++ +|.++.-.
T Consensus 556 ~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~ 625 (674)
T cd01384 556 METLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPE 625 (674)
T ss_pred HHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999999999999999999 9997655 55555433
No 3
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=1.8e-34 Score=269.14 Aligned_cols=130 Identities=22% Similarity=0.193 Sum_probs=113.9
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCccccccccCCccchHHHHHHHHHHH
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTVGLASQSRSQQTAATYFRYSLMEL 88 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~~~~~~~~~~~TV~skFr~~L~~L 88 (156)
..+--.|++|-|.|++.+|||||||.|++++ +.++.+| ++|++||++.... .++.++.+||+++|+.||++|
T Consensus 578 ~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~-~~ll~~S~n~~i~~lf~~~~~~-----~~~~~k~~tv~s~Fk~qL~~L 651 (821)
T PTZ00014 578 KNFVIKHTIGDIQYCASGFLFKNKDVLRPEL-VEVVKASPNPLVRDLFEGVEVE-----KGKLAKGQLIGSQFLNQLDSL 651 (821)
T ss_pred CceEEEEeceeeeeccCcHHHhccccchHHH-HHHHHhCccHHHHHHhcccccc-----cccccCCCcHHHHHHHHHHHH
Confidence 4567788999999999999999999999999 7888777 8999999864321 112345689999999999999
Q ss_pred HHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHHHHH
Q psy12964 89 LQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCAILS 146 (156)
Q Consensus 89 m~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~~~~ 146 (156)
|++|++|+||||||||||+.|.|+.||..+|++||||+||+|++||++ |||+|++|..
T Consensus 652 m~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~ 710 (821)
T PTZ00014 652 MSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAE 710 (821)
T ss_pred HHHHhccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHH
Confidence 999999999999999999999999999999999999999999999999 9998655433
No 4
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=2.5e-34 Score=265.46 Aligned_cols=135 Identities=19% Similarity=0.264 Sum_probs=115.4
Q ss_pred cccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCccccccccCCccchHHHHHHHHHHHH
Q psy12964 12 LCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTVGLASQSRSQQTAATYFRYSLMELL 89 (156)
Q Consensus 12 ~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~~~~~~~~~~~TV~skFr~~L~~Lm 89 (156)
.+.-.|++|-|.|++.+|||||||.|++++ ..++.+| ++|++||+............++.+..||+++|+.||++||
T Consensus 523 ~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~-~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm 601 (717)
T cd01382 523 GFIIRHFAGAVCYETTQFVEKNNDALHMSL-ESLICESKDKFLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLL 601 (717)
T ss_pred CEEEEecceeEeecCCChHHhcCccccHHH-HHHHHhCchHHHHHHhccccccccccccccCccCccHHHHHHHHHHHHH
Confidence 466678899899999999999999999999 7888776 8999999865432221112233467899999999999999
Q ss_pred HHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHHHHHH
Q psy12964 90 QRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCAILSL 147 (156)
Q Consensus 90 ~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~~~~~ 147 (156)
++|++|+||||||||||+.+.|+.||..+|++||||+||+|+|+|++ |||+|++|..+
T Consensus 602 ~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~vri~r~Gyp~R~~f~~F 660 (717)
T cd01382 602 EKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHEL 660 (717)
T ss_pred HHHhccCCeeeeeeCCCcccCCCCCChHHHHHHHHhcchHHHHHHHHccCchhhhHHHH
Confidence 99999999999999999999999999999999999999999999999 99987664443
No 5
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=2.6e-34 Score=264.43 Aligned_cols=140 Identities=21% Similarity=0.254 Sum_probs=117.1
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCc------------cccccccCCccc
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSST------------VGLASQSRSQQT 76 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~------------~~~~~~~~~~~T 76 (156)
..+.-.|++|.|.|++.+|||||||.|++++ ++++.+| ++++.||+....... ++.+.++.+..|
T Consensus 484 ~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~-~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 562 (691)
T cd01380 484 TSFTVKHFADDVEYDVDGFLEKNRDTVSDEH-LDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKRAKQHKPT 562 (691)
T ss_pred CeeEEEEccCCcccccccHHHhccccccHHH-HHHHHhCccHHHHHHhhhhcccccccccccccccccccccccccCCCc
Confidence 3566778889889999999999999999999 7888777 899999976432110 111223456799
Q ss_pred hHHHHHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHH------HHHHHh
Q psy12964 77 AATYFRYSLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCA------ILSLKL 149 (156)
Q Consensus 77 V~skFr~~L~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~------~~~~~~ 149 (156)
|+++|+.||+.||++|++|+||||||||||+.|+|+.||..+|++||||+||+|++||++ |||+|++ +|+++.
T Consensus 563 v~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~ry~~L~ 642 (691)
T cd01380 563 VGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFAQRYRVLV 642 (691)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999 9997655 555554
Q ss_pred hh
Q psy12964 150 LR 151 (156)
Q Consensus 150 ~~ 151 (156)
-.
T Consensus 643 ~~ 644 (691)
T cd01380 643 PS 644 (691)
T ss_pred cc
Confidence 33
No 6
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.3e-34 Score=274.47 Aligned_cols=127 Identities=25% Similarity=0.312 Sum_probs=115.7
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCccccccccCCccchHHHHHHHHHHH
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTVGLASQSRSQQTAATYFRYSLMEL 88 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~~~~~~~~~~~TV~skFr~~L~~L 88 (156)
+.++..||||=|.|.+.||+|||||+|+.++ +.++..| +++..||++... ..++++++|+|++|++||.+|
T Consensus 546 ~~FvvkHYAgDVeY~veg~ldKNkD~l~~~l-l~Ll~~StNe~vs~Lf~~~~~------~~~K~~~pT~gs~~K~sl~~L 618 (1463)
T COG5022 546 NKFVVKHYAGDVEYDVEGFLDKNKDPLNDDL-LELLKASTNEFVSTLFDDEEN------IESKGRFPTLGSRFKESLNSL 618 (1463)
T ss_pred CceEEEeecccceeeccchhhhCcchhhHHH-HHHHhhccchHHHHhhhhhhh------ccccCCCCcHHHHHHHHHHHH
Confidence 4788899999999999999999999999999 8888777 999999995432 223478899999999999999
Q ss_pred HHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHHH
Q psy12964 89 LQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCAI 144 (156)
Q Consensus 89 m~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~~ 144 (156)
|.+|++|+||||||||||.+|.|+.||..+|++||||+||+|+|||++ |||+|+.|
T Consensus 619 m~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f 675 (1463)
T COG5022 619 MSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTF 675 (1463)
T ss_pred HHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhH
Confidence 999999999999999999999999999999999999999999999999 99986653
No 7
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=5.8e-34 Score=262.23 Aligned_cols=142 Identities=23% Similarity=0.298 Sum_probs=117.6
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCC-----ccccccccCCccchHHHHHH
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSS-----TVGLASQSRSQQTAATYFRY 83 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~-----~~~~~~~~~~~~TV~skFr~ 83 (156)
..+.-.|++|-|.|++.+|+|||+|.|+.++ +.++.+| +++++||+...... ..+.+.++++.+||+++|+.
T Consensus 492 ~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~-~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~tv~~~F~~ 570 (693)
T cd01377 492 AHFSLVHYAGTVDYNIDGWLEKNKDPLNDNV-VGLLKKSSDKLVAELFKDYAEASGDGGGGGGKKKKGGSFRTVSQLYKE 570 (693)
T ss_pred CcEEEEeeceeEeeccccHHHhccccccHHH-HHHHHhCchHHHHHHhhhhcccccccccccCCCCcCCccccHHHHHHH
Confidence 3466678888888888999999999999999 7888777 89999998643221 11112233456899999999
Q ss_pred HHHHHHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHH------HHHHHhhhhc
Q psy12964 84 SLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCA------ILSLKLLRLL 153 (156)
Q Consensus 84 ~L~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~------~~~~~~~~~~ 153 (156)
||++||++|++|+||||||||||+.|+|+.||..+|++||||+||+|+++|++ |||.|++ +|.++.-..+
T Consensus 571 qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~rY~~L~~~~~ 647 (693)
T cd01377 571 QLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQRYEILAPNAI 647 (693)
T ss_pred HHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999 9997554 5666554443
No 8
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.1e-33 Score=259.73 Aligned_cols=139 Identities=24% Similarity=0.304 Sum_probs=118.5
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCccccccccCCccchHHHHHHHHHHH
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTVGLASQSRSQQTAATYFRYSLMEL 88 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~~~~~~~~~~~TV~skFr~~L~~L 88 (156)
..+.-.|++|-|.|++.+|+|||||.+++++ ..++.+| ++|+++|+....... ..+++..||+++|+.||+.|
T Consensus 478 ~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~-~~ll~~S~n~~i~~lf~~~~~~~~----~~~~k~~tv~~~fk~qL~~L 552 (671)
T cd01381 478 TQFGINHFAGVVFYDTRGFLEKNRDTFSGDL-SQLVQSSKNKFLKQIFQADVEMGA----ETRKKKPTLSSQFRRSLDLL 552 (671)
T ss_pred CceEEEEecceEeeccCCHHHhccchhhHHH-HHHHHhChHHHHHHHhcccccccc----cccccCCcHHHHHHHHHHHH
Confidence 3566778888888999999999999999999 7888777 899999986542211 12345689999999999999
Q ss_pred HHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHH------HHHHHhhhhcC
Q psy12964 89 LQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCA------ILSLKLLRLLP 154 (156)
Q Consensus 89 m~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~------~~~~~~~~~~~ 154 (156)
|++|++|+||||||||||+.|+|+.||..+|++||||+||+|+++|++ |||+|++ +|+++....+|
T Consensus 553 ~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~ 625 (671)
T cd01381 553 MRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKP 625 (671)
T ss_pred HHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCccccc
Confidence 999999999999999999999999999999999999999999999999 9997554 66666555443
No 9
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1.6e-33 Score=258.68 Aligned_cols=138 Identities=23% Similarity=0.319 Sum_probs=114.9
Q ss_pred cccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCc-----cc-cccccCCccchHHHHHH
Q psy12964 12 LCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSST-----VG-LASQSRSQQTAATYFRY 83 (156)
Q Consensus 12 ~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~-----~~-~~~~~~~~~TV~skFr~ 83 (156)
.+--.|++|-|.|++.+|||||||.|++++ +.++.+| +++++||+....... .+ .++++.+.+||+++|+.
T Consensus 477 ~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~-~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~~f~~ 555 (677)
T cd01387 477 EFTIKHYAGKVTYQVHKFLDKNHDQVRQDV-LDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAAKFQQ 555 (677)
T ss_pred eeEEEEeCceeeecCCChHHhccchhhHHH-HHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHHHHHH
Confidence 456678888888999999999999999999 7888776 899999975322110 11 11223456899999999
Q ss_pred HHHHHHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHH------HHHHHhh
Q psy12964 84 SLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCA------ILSLKLL 150 (156)
Q Consensus 84 ~L~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~------~~~~~~~ 150 (156)
||++||+.|++|+||||||||||+.|.|+.||..+|++||||+||+|+++|++ |||+|+. +|+++..
T Consensus 556 sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~ 629 (677)
T cd01387 556 SLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVA 629 (677)
T ss_pred HHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999 9997554 5665543
No 10
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=3.2e-33 Score=257.24 Aligned_cols=134 Identities=22% Similarity=0.230 Sum_probs=111.8
Q ss_pred cccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCcc----ccccccCCccchHHHHHHHH
Q psy12964 12 LCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTV----GLASQSRSQQTAATYFRYSL 85 (156)
Q Consensus 12 ~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~----~~~~~~~~~~TV~skFr~~L 85 (156)
.+--.|++|-|.|++.+|||||+|.|++++ +.++.+| +++++||+........ ....++.+..||+++|+.||
T Consensus 493 ~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~-~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~tV~~~f~~~L 571 (692)
T cd01385 493 AFIIQHYAGKVKYQIKDFREKNMDLMRQDI-VALLKGSDSSYVRELIGMDPVAVFRWAVLRAAFRAMAAPSVSAQFQTSL 571 (692)
T ss_pred eEEEEEecceeeecCCCHHHhccccccHHH-HHHHHhCccHHHHHHhccCcccccccccccccccCccCCcHHHHHHHHH
Confidence 455677888888888888999999999999 7888766 8999999753321110 00112234589999999999
Q ss_pred HHHHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHHHHH
Q psy12964 86 MELLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCAILS 146 (156)
Q Consensus 86 ~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~~~~ 146 (156)
++||+.|++|+||||||||||+.+.|+.||..+|++||||+||+|+++|++ |||.|+++-.
T Consensus 572 ~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~ 633 (692)
T cd01385 572 NKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQD 633 (692)
T ss_pred HHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHH
Confidence 999999999999999999999999999999999999999999999999999 9998665433
No 11
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.98 E-value=6.8e-33 Score=254.61 Aligned_cols=128 Identities=24% Similarity=0.337 Sum_probs=113.5
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCccccccccCCccchHHHHHHHHHHH
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTVGLASQSRSQQTAATYFRYSLMEL 88 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~~~~~~~~~~~TV~skFr~~L~~L 88 (156)
..+.-.|++|-|.|++.+|++||+|.+++++ +.++.+| +++++||+..... ..++++.+||+++|+.||+.|
T Consensus 485 ~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~-~~ll~~S~n~~i~~lf~~~~~~-----~~~~~~~~tv~~~fk~~L~~L 558 (677)
T smart00242 485 TEFIIKHYAGDVTYDVTGFLEKNKDTLFKDL-IELLQSSKNPLIASLFPSGESN-----AGSKKRFRTVGSQFKESLNKL 558 (677)
T ss_pred CeEEEEecceeEeecCccHHHHccchhhHHH-HHHHHhCCcHHHHHHhcccccc-----ccccCCCCcHHHHHHHHHHHH
Confidence 4567778999999999999999999999999 7888777 8999999864421 123456799999999999999
Q ss_pred HHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHHH
Q psy12964 89 LQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCAI 144 (156)
Q Consensus 89 m~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~~ 144 (156)
|+.|++|+||||||||||+.++|+.||...|.+||||+||+|+++|++ |||.|+++
T Consensus 559 ~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~ 615 (677)
T smart00242 559 MDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPF 615 (677)
T ss_pred HHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecH
Confidence 999999999999999999999999999999999999999999999999 99976553
No 12
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.98 E-value=7.5e-33 Score=254.35 Aligned_cols=140 Identities=24% Similarity=0.318 Sum_probs=116.6
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCC------ccccccccCCccchHHHHH
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSS------TVGLASQSRSQQTAATYFR 82 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~------~~~~~~~~~~~~TV~skFr 82 (156)
..+.-.|++|-|.|++.+|+|||+|.|++++ ..++.+| +++++||+...... ......++.+..||+++|+
T Consensus 478 ~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~-~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~ 556 (679)
T cd00124 478 TEFTIKHYAGDVTYDARGFLEKNKDVLSPEL-VSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGSQFR 556 (679)
T ss_pred CceEEEeeceeEEecCCCHHHhcCCcccHHH-HHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHHHHH
Confidence 3566677888888888888999999999999 7888766 89999997632211 1112234457899999999
Q ss_pred HHHHHHHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHH------HHHHHhhh
Q psy12964 83 YSLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCA------ILSLKLLR 151 (156)
Q Consensus 83 ~~L~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~------~~~~~~~~ 151 (156)
.||+.||++|++|+||||||||||+.++|+.||...|.+||||+||+|+++|++ |||.|++ +|.++.-.
T Consensus 557 ~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~ 632 (679)
T cd00124 557 TSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPD 632 (679)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999999999999999999999999 9997554 55555433
No 13
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.98 E-value=9.5e-33 Score=253.63 Aligned_cols=140 Identities=21% Similarity=0.289 Sum_probs=111.7
Q ss_pred cccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCC-----Cccc-cccccCCccchHHHHHH
Q psy12964 12 LCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDS-----STVG-LASQSRSQQTAATYFRY 83 (156)
Q Consensus 12 ~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~-----~~~~-~~~~~~~~~TV~skFr~ 83 (156)
.+.-.|++|-|.|++.+|+|||||.|++++ ++++.+| +++. +|...... +..+ ...+..+..||+++|+.
T Consensus 479 ~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~-~~ll~~S~~~~~~-~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~~~fk~ 556 (677)
T cd01383 479 AFTVRHYAGEVTYDTTGFLEKNRDLLHSDS-IQLLSSCKCQLPQ-LFASSMLIQSPVVGPLYVASAADSQKLSVGTKFKG 556 (677)
T ss_pred ceEEEEeccceeecCCChHHhccccccHHH-HHHHHhCchHHHH-HHHhhhhccccccccccccccccccCcchHHHHHH
Confidence 466677888888888888999999999999 7888766 5544 66432110 1111 11223567999999999
Q ss_pred HHHHHHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHH------HHHHHhhhhc
Q psy12964 84 SLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCA------ILSLKLLRLL 153 (156)
Q Consensus 84 ~L~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~------~~~~~~~~~~ 153 (156)
||++||+.|++|+||||||||||+.|+|+.||..+|++||||+||+|+|+|+| |||+|+. +|+++.-..+
T Consensus 557 qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~ 633 (677)
T cd01383 557 QLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLENI 633 (677)
T ss_pred HHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999 9997555 5655544433
No 14
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.97 E-value=3.6e-32 Score=252.49 Aligned_cols=142 Identities=14% Similarity=0.119 Sum_probs=112.6
Q ss_pred cccccccCc--eEEecccccccCCcchH-HHHHHHHhhhhc--cccccccCCCCCCCc---------cc-------cc--
Q psy12964 12 LCCRGSVDG--WTVQSTSIDVNRCRDVD-RRAVDYGYFIHT--IVLSPLLQDKSDSST---------VG-------LA-- 68 (156)
Q Consensus 12 ~~~~~~~~g--~~~~~t~~fleKNkD~L-~~~l~~~~~~~S--~ll~~Lf~~~~~~~~---------~~-------~~-- 68 (156)
.+.-.|+|| .|.|++.+|||||||.+ ..++ ..++.+| ++|++||+.....+. .+ +.
T Consensus 516 ~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~-~~ll~~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (767)
T cd01386 516 QFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNA-PQLLQDSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSS 594 (767)
T ss_pred cEEEEEcCCCCceEecCCCHHHhcCCCCChHHH-HHHHHhCCcHHHHHHHhccccccccccccccccccccccccccccc
Confidence 467779999 69999999999999976 5788 6777766 899999965321000 00 00
Q ss_pred --------cccCCccchHHHHHHHHHHHHHHHhcCCCceeeeecCCCCCC----------------------CCCCChHH
Q psy12964 69 --------SQSRSQQTAATYFRYSLMELLQRIVSGTPQFVRCIKPNELGI----------------------PNSFDRCK 118 (156)
Q Consensus 69 --------~~~~~~~TV~skFr~~L~~Lm~~L~~t~phfIRCIKPN~~k~----------------------p~~fd~~~ 118 (156)
....+.+||+++|+.||++||++|++|+||||||||||+.|. |+.||..+
T Consensus 595 ~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phfIRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~ 674 (767)
T cd01386 595 IRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHFVHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPL 674 (767)
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHhccCCeeEEEeCccccccccccccccccccccccccccccccccCHHH
Confidence 011234699999999999999999999999999999999874 78999999
Q ss_pred HHHHHHhhchHHHHhhhc-CCcchH------HHHHHHhhhhcC
Q psy12964 119 VIKQLRYTGVLACNASCL-GHLSLC------AILSLKLLRLLP 154 (156)
Q Consensus 119 V~~QLr~~GvlE~iri~~-gyp~~~------~~~~~~~~~~~~ 154 (156)
|++||||+||+|+|||+| |||+|. .+|.++....+|
T Consensus 675 V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~~~~~ 717 (767)
T cd01386 675 LRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAEGLTK 717 (767)
T ss_pred HHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhChhhcc
Confidence 999999999999999999 999754 467766655444
No 15
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.97 E-value=2.7e-31 Score=243.23 Aligned_cols=115 Identities=37% Similarity=0.490 Sum_probs=102.2
Q ss_pred cccccccCceEEecccccccCCcchHHHHHHHHhhhhccccccccCCCCCCCccccccccCCccchHHHHHHHHHHHHHH
Q psy12964 12 LCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHTIVLSPLLQDKSDSSTVGLASQSRSQQTAATYFRYSLMELLQR 91 (156)
Q Consensus 12 ~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S~ll~~Lf~~~~~~~~~~~~~~~~~~~TV~skFr~~L~~Lm~~ 91 (156)
.+--.|++|-|.|++.+|||||||.|++++ ++++.+| +||+++||.||++||++
T Consensus 488 ~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~-~~ll~~S-------------------------~tv~~~fr~~l~~L~~~ 541 (653)
T cd01379 488 SFGIHHYAGKVLYNASGFLEKNRDFLPADI-VLLLRSS-------------------------QTVASYFRYSLMDLLSK 541 (653)
T ss_pred ceEEEEeceeEeecCCCHHHhccccccHHH-HHHHHhC-------------------------cHHHHHHHHHHHHHHHH
Confidence 355567888888888888999999999999 7877666 58999999999999999
Q ss_pred HhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHH------HHHHHhhhh
Q psy12964 92 IVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCA------ILSLKLLRL 152 (156)
Q Consensus 92 L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~------~~~~~~~~~ 152 (156)
|.+|+||||||||||+.|.|+.||...|++||||+||+|+++|++ |||+|++ +|.++..++
T Consensus 542 l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~ 609 (653)
T cd01379 542 MVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRF 609 (653)
T ss_pred HhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999 9997554 666665443
No 16
>KOG0164|consensus
Probab=99.96 E-value=4.2e-30 Score=233.24 Aligned_cols=147 Identities=22% Similarity=0.315 Sum_probs=129.7
Q ss_pred CCccccccccccc--ccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCccccccccCCccchHH
Q psy12964 4 RPSIHEMNLCCRG--SVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTVGLASQSRSQQTAAT 79 (156)
Q Consensus 4 ~~~~~~~~~~~~~--~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~~~~~~~~~~~TV~s 79 (156)
.|++++|.+.|+. ||+|-|.|+..||+|||+|.|+.|+ ..++-+| ++++++|++..... ....+++.|+++
T Consensus 489 ~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dl-k~~m~~s~~~~l~~~fpeG~~~~----~~~tkRP~Tagt 563 (1001)
T KOG0164|consen 489 KQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDL-KRLMYNSKNPLLKSLFPEGNPDI----AEVTKRPPTAGT 563 (1001)
T ss_pred cccccccCccceeEEEeccceEEEEEeeeccCccHHHHHH-HHHHHhcCCchHHHhCCCCChhH----HhhhcCCCcHHH
Confidence 3789999999986 5999999999999999999999999 4544334 99999999755221 223467899999
Q ss_pred HHHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcc------hHHHHHHHhhhh
Q psy12964 80 YFRYSLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLS------LCAILSLKLLRL 152 (156)
Q Consensus 80 kFr~~L~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~------~~~~~~~~~~~~ 152 (156)
+|+.++-.||.+|.+.+|+||||||||+.|.|+.||.+++.+|++|+|++|.+|+|+ ||.+ |..||.|++--+
T Consensus 564 ~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi~~~T 643 (1001)
T KOG0164|consen 564 LFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKMICEST 643 (1001)
T ss_pred HHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHhhCccc
Confidence 999999999999999999999999999999999999999999999999999999998 8764 777999999999
Q ss_pred cCC
Q psy12964 153 LPV 155 (156)
Q Consensus 153 ~~~ 155 (156)
||-
T Consensus 644 WPn 646 (1001)
T KOG0164|consen 644 WPN 646 (1001)
T ss_pred CCC
Confidence 994
No 17
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.96 E-value=7.4e-31 Score=240.72 Aligned_cols=142 Identities=25% Similarity=0.323 Sum_probs=108.1
Q ss_pred cccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCC------------CC----cccccccc
Q psy12964 10 MNLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSD------------SS----TVGLASQS 71 (156)
Q Consensus 10 ~~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~------------~~----~~~~~~~~ 71 (156)
-..+--.|++|.|.|++.+|++||+|.+++++ +.++..| ++|++||+.... .. .......+
T Consensus 484 ~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~-~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (689)
T PF00063_consen 484 KSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDF-VSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQSRSSGSK 562 (689)
T ss_dssp TSCEEEEETTEEEEEE-TTHHHHHHE-S-HHH-HHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTSSCCCGG
T ss_pred CCceEeecccCcceeccccccccccchHHHHH-HHHHHhCcCcccccccccccccccccccccccccccccccccccccc
Confidence 34455678999999999999999999999999 7888777 899999976531 00 00111223
Q ss_pred CCccchHHHHHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcc------hHHH
Q psy12964 72 RSQQTAATYFRYSLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLS------LCAI 144 (156)
Q Consensus 72 ~~~~TV~skFr~~L~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~------~~~~ 144 (156)
.+..||+++|+.+|+.||+.|.+|+||||||||||+.+.|+.||..+|.+||+++||+|+++|++ |||+ |+.+
T Consensus 563 ~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~~eF~~R 642 (689)
T PF00063_consen 563 KKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTFDEFLRR 642 (689)
T ss_dssp TCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEHHHHHHH
T ss_pred cccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecchhhhhhh
Confidence 45699999999999999999999999999999999999999999999999999999999999998 9996 4555
Q ss_pred HHHHhhhh
Q psy12964 145 LSLKLLRL 152 (156)
Q Consensus 145 ~~~~~~~~ 152 (156)
|+.+.-..
T Consensus 643 Y~~L~~~~ 650 (689)
T PF00063_consen 643 YKCLLPSS 650 (689)
T ss_dssp HGGGSTTC
T ss_pred hceechhh
Confidence 65554443
No 18
>KOG0162|consensus
Probab=99.96 E-value=2.3e-30 Score=235.39 Aligned_cols=138 Identities=21% Similarity=0.301 Sum_probs=123.3
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCccccccccCCccchHHHHHHHHHHH
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTVGLASQSRSQQTAATYFRYSLMEL 88 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~~~~~~~~~~~TV~skFr~~L~~L 88 (156)
+.++-.||+|=|.|+..||-|||||.|..|+ ++++..| +|+++||++.... .++++++|.+++.++|.++|
T Consensus 500 ~~FvIkHYAGdVtYdi~G~~drNrD~L~~Dl-ieLm~ts~~~Fl~slFPe~v~~------dskrRP~Tag~kIkkqANdL 572 (1106)
T KOG0162|consen 500 NGFVIKHYAGDVTYDIDGFCDRNRDVLFKDL-IELMQTSENPFLKSLFPENVDA------DSKRRPPTAGDKIKKQANDL 572 (1106)
T ss_pred CceEEEEeccceeeecccccccchhHHHHHH-HHHHhccchHHHHHhCchhhcc------cccCCCCCchhhHHhhHHHH
Confidence 4567777888888888888999999999999 8888766 9999999986632 34578899999999999999
Q ss_pred HHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcc------hHHHHHHHhhhhcCC
Q psy12964 89 LQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLS------LCAILSLKLLRLLPV 155 (156)
Q Consensus 89 m~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~------~~~~~~~~~~~~~~~ 155 (156)
+++|.+|.||||||||||++|.|+.||...|++|++|+|+-|.||||| ||.+ |.+||++++--+||-
T Consensus 573 VeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t~~t 646 (1106)
T KOG0162|consen 573 VETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQTWPT 646 (1106)
T ss_pred HHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCcccccc
Confidence 999999999999999999999999999999999999999999999999 9986 677888888888873
No 19
>KOG0161|consensus
Probab=99.96 E-value=6.6e-30 Score=251.43 Aligned_cols=134 Identities=25% Similarity=0.320 Sum_probs=118.7
Q ss_pred ccccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCcc---c---cccccCCccchHHH
Q psy12964 9 EMNLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTV---G---LASQSRSQQTAATY 80 (156)
Q Consensus 9 ~~~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~---~---~~~~~~~~~TV~sk 80 (156)
.-++|+..||+|||-|++.+||+||+|+|+..+ +.++.+| ++|+.||++....... + ...+++.+.||++.
T Consensus 564 ~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v-~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F~Tvs~~ 642 (1930)
T KOG0161|consen 564 AEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNV-VSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKKGSFRTVSQL 642 (1930)
T ss_pred chhhhheeeecceeccCccchhhcCCCCchHHH-HHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCCcchhhHHHH
Confidence 457899999999999999999999999999999 7888766 8999999983322210 1 24567889999999
Q ss_pred HHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHH
Q psy12964 81 FRYSLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCA 143 (156)
Q Consensus 81 Fr~~L~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~ 143 (156)
++.||+.||.+|.+|+|||||||.||+.|.|+.+|..+|+.||+|.||+|+|||+| |||+++.
T Consensus 643 ~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~ 706 (1930)
T KOG0161|consen 643 YKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMP 706 (1930)
T ss_pred HHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccc
Confidence 99999999999999999999999999999999999999999999999999999998 9997655
No 20
>KOG0163|consensus
Probab=99.93 E-value=5e-26 Score=207.85 Aligned_cols=135 Identities=22% Similarity=0.276 Sum_probs=116.4
Q ss_pred cccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCccccccccCCccchHHHHHHHHHHHH
Q psy12964 12 LCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTVGLASQSRSQQTAATYFRYSLMELL 89 (156)
Q Consensus 12 ~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~~~~~~~~~~~TV~skFr~~L~~Lm 89 (156)
+.--.|++|-|-|+|..|+|||.|.|+..+ -.++.+| +|+.+||+.....+..+ ...+-++-+||++|+.||..||
T Consensus 577 G~liRHfAGaVCYeT~~FvEKNnD~LH~SL-e~Li~es~~~ll~sLF~S~s~t~a~~-~~gkL~~iSVGaKFKtQL~~Ll 654 (1259)
T KOG0163|consen 577 GFLIRHFAGAVCYETEQFVEKNNDALHNSL-EGLIEESDNPLLVSLFPSGSSTSAKQ-TRGKLKFISVGAKFKTQLSELL 654 (1259)
T ss_pred ceeeeecccceeechHHHHHhccHHHHHHH-HHHHHhccchHHHHHccCCCCCcccc-ccceeeEEehhHHHHHHHHHHH
Confidence 445678999999999999999999999999 3455566 99999999765443222 2234678999999999999999
Q ss_pred HHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHHHHHHH
Q psy12964 90 QRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCAILSLK 148 (156)
Q Consensus 90 ~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~~~~~~ 148 (156)
+.|++|..|||||||||..+.+..||...++.||+|+|+...+++.+ |||.|..|..|+
T Consensus 655 dKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLY 714 (1259)
T KOG0163|consen 655 DKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLY 714 (1259)
T ss_pred HHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHH
Confidence 99999999999999999999999999999999999999999999888 999988765554
No 21
>KOG0160|consensus
Probab=99.91 E-value=3e-25 Score=206.60 Aligned_cols=127 Identities=23% Similarity=0.339 Sum_probs=110.3
Q ss_pred cccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCccccccccCCccchHHHHHHHHHHHHHH
Q psy12964 14 CRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTVGLASQSRSQQTAATYFRYSLMELLQR 91 (156)
Q Consensus 14 ~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~~~~~~~~~~~TV~skFr~~L~~Lm~~ 91 (156)
--.|++|-|.|.+.+||+||||.+.+++ ++++..| .++..+|++..... .+..++.||+++|+.+|..||.+
T Consensus 485 ~v~hyAg~v~y~~~~fL~knrd~v~~el-~~ll~~s~~~~~~~~~~~~~~~~-----~~~~~~~tv~s~fk~~l~~Lm~~ 558 (862)
T KOG0160|consen 485 RVAHYAGDVTYDTEGFLEKNRDYVSDEL-IDLLLASDCHFVAGLAPPLRADS-----SAKSKRSTVGSQFKLQLISLMET 558 (862)
T ss_pred ccccccCccccchhhhccCCccccCHHH-HhhhhhcccchHHHhccchhcch-----hhhhhcccHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999 7777655 88888888433211 13456799999999999999999
Q ss_pred HhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHHHHH
Q psy12964 92 IVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCAILS 146 (156)
Q Consensus 92 L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~~~~ 146 (156)
|++|.||||||||||..+.|..||..+|.+||+++|++|++||.. |||.++.+..
T Consensus 559 l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~E 614 (862)
T KOG0160|consen 559 LNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIE 614 (862)
T ss_pred hcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHH
Confidence 999999999999999999999999999999999999999999988 9998654333
No 22
>KOG4229|consensus
Probab=97.72 E-value=7.4e-06 Score=79.34 Aligned_cols=127 Identities=17% Similarity=0.113 Sum_probs=91.1
Q ss_pred ccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCcc---------------------ccc---
Q psy12964 15 RGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTV---------------------GLA--- 68 (156)
Q Consensus 15 ~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~---------------------~~~--- 68 (156)
-.|++|.+.|++.+|+|||+|+++.|+ +.++..| .++..++......... +..
T Consensus 547 I~Hyagkv~y~~~~flekNrD~~~~d~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~~~~~~~~~~~~~ 625 (1062)
T KOG4229|consen 547 ITHYAGKVQYNIRGFLEKNRDTVRNDL-VNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVPLEVTLRRPVRKTL 625 (1062)
T ss_pred eeeecceehhhhhhHHHhhhhhhhhhH-HhhcccccchhhcccCCCCCccCCcchhhhhhcccccccchhhhcccccccc
Confidence 356899999999999999999999999 5555444 5666666432211100 000
Q ss_pred ----cc------cCCccchHHHHHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCChH-HHHHHHHhhchHHHHhhhc-
Q psy12964 69 ----SQ------SRSQQTAATYFRYSLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRC-KVIKQLRYTGVLACNASCL- 136 (156)
Q Consensus 69 ----~~------~~~~~TV~skFr~~L~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~-~V~~QLr~~GvlE~iri~~- 136 (156)
+. .....+++.+++-++.+....|.+..+||.|||++|+.-.+.+++.. ....++...|..++....+
T Consensus 626 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1062)
T KOG4229|consen 626 TADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRP 705 (1062)
T ss_pred ccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCc
Confidence 00 01245667777778889999999999999999999999988888877 7888888888887776655
Q ss_pred CCcchH
Q psy12964 137 GHLSLC 142 (156)
Q Consensus 137 gyp~~~ 142 (156)
|+..+.
T Consensus 706 ~~~~~~ 711 (1062)
T KOG4229|consen 706 GRKTNL 711 (1062)
T ss_pred cccccc
Confidence 654433
No 23
>KOG4229|consensus
Probab=75.62 E-value=0.47 Score=46.89 Aligned_cols=69 Identities=19% Similarity=0.118 Sum_probs=58.9
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHH
Q psy12964 75 QTAATYFRYSLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCA 143 (156)
Q Consensus 75 ~TV~skFr~~L~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~ 143 (156)
..-..++.....+++..+....|.|++|++-|..+....|+...|..|+.+.|+.+..+++. +++..+.
T Consensus 789 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~ 858 (1062)
T KOG4229|consen 789 PQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEIS 858 (1062)
T ss_pred CccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheecccccccc
Confidence 33344677788889999999999999999999888888999999999999999999999987 7655443
No 24
>PF03338 Pox_J1: Poxvirus J1 protein; InterPro: IPR005006 This is a family of proteins expressed by members of the Poxviridae.
Probab=38.14 E-value=55 Score=25.27 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=38.9
Q ss_pred cccccccCCCCCCCccccccccCCccchHHHHHHHHHHHHHHHhcCCCceeeeecCCCCC
Q psy12964 50 IVLSPLLQDKSDSSTVGLASQSRSQQTAATYFRYSLMELLQRIVSGTPQFVRCIKPNELG 109 (156)
Q Consensus 50 ~ll~~Lf~~~~~~~~~~~~~~~~~~~TV~skFr~~L~~Lm~~L~~t~phfIRCIKPN~~k 109 (156)
+=++.||.........++ -.-..--.+-|..++-.|+..+.-..|--+|||-||+.+
T Consensus 79 ~~lr~lfnr~p~~~~~~~---V~v~~Gyl~DFV~s~~rL~ke~~~~~p~~~~YIdPr~~~ 135 (145)
T PF03338_consen 79 KELRKLFNRIPINVSDGR---VQVNKGYLSDFVISLIRLKKELGFDLPEPTTYIDPRDDI 135 (145)
T ss_pred HHHHHHhccCCCCCCCCc---eEeccccHHHHHHHHHHHHHhcCCCCCCCceeeCCccch
Confidence 445667765444222221 111233567899999999999998899999999999854
No 25
>PHA01080 hypothetical protein
Probab=28.54 E-value=35 Score=23.68 Aligned_cols=19 Identities=16% Similarity=0.365 Sum_probs=16.5
Q ss_pred cccccccccCceEEecccc
Q psy12964 10 MNLCCRGSVDGWTVQSTSI 28 (156)
Q Consensus 10 ~~~~~~~~~~g~~~~~t~~ 28 (156)
|+.|..-|-||++++++.-
T Consensus 1 Mp~C~~~n~dGfLv~t~~~ 19 (80)
T PHA01080 1 MPVCALPNSQGFLAVTDKP 19 (80)
T ss_pred CCeeeccCCCceEEecCcc
Confidence 7899999999998887765
No 26
>KOG4423|consensus
Probab=23.52 E-value=53 Score=26.97 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=28.6
Q ss_pred cccccccc-cCceEEecccccccCCcchHHHHHHHHhh-hhc-cccccc
Q psy12964 10 MNLCCRGS-VDGWTVQSTSIDVNRCRDVDRRAVDYGYF-IHT-IVLSPL 55 (156)
Q Consensus 10 ~~~~~~~~-~~g~~~~~t~~fleKNkD~L~~~l~~~~~-~~S-~ll~~L 55 (156)
+...|..| ++||+.-+... +||-|....+| +++. .++ +.+.+.
T Consensus 159 ~d~f~kengf~gwtets~Ke--nkni~Ea~r~l-Ve~~lvnd~q~~~s~ 204 (229)
T KOG4423|consen 159 FDNFKKENGFEGWTETSAKE--NKNIPEAQREL-VEKILVNDEQPIKSS 204 (229)
T ss_pred HHHHHhccCccceeeecccc--ccChhHHHHHH-HHHHHhhccCCcccc
Confidence 34556666 99998544444 89999999999 6655 455 444433
No 27
>COG4899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.37 E-value=38 Score=26.38 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=10.9
Q ss_pred CCceeeeecCCCCC
Q psy12964 96 TPQFVRCIKPNELG 109 (156)
Q Consensus 96 ~phfIRCIKPN~~k 109 (156)
.-|||||+.|=.-+
T Consensus 48 ~r~FIr~~lpIPi~ 61 (166)
T COG4899 48 KRHFIRSNLPIPID 61 (166)
T ss_pred cceeeeecccceec
Confidence 44999999997643
Done!