Query psy12964
Match_columns 156
No_of_seqs 163 out of 1202
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 15:38:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lkx_A Myosin IE heavy chain; 100.0 8.7E-36 3E-40 273.1 5.8 129 11-146 501-632 (697)
2 4db1_A Myosin-7; S1DC, cardiac 100.0 2E-35 7E-40 273.3 6.2 143 11-154 575-731 (783)
3 2v26_A Myosin VI; calmodulin-b 100.0 3.9E-35 1.4E-39 271.6 7.7 133 11-144 571-707 (784)
4 1w7j_A Myosin VA; motor protei 100.0 5.7E-35 2E-39 270.8 7.0 142 11-153 546-719 (795)
5 1w9i_A Myosin II heavy chain; 100.0 3.4E-35 1.2E-39 271.4 5.3 139 11-154 566-713 (770)
6 1kk8_A Myosin heavy chain, str 100.0 4.7E-35 1.6E-39 272.6 6.0 144 10-154 575-729 (837)
7 4anj_A Unconventional myosin-V 100.0 9.1E-35 3.1E-39 275.4 7.4 133 11-144 575-711 (1052)
8 2ycu_A Non muscle myosin 2C, a 100.0 1.8E-34 6E-39 272.6 7.8 143 11-154 547-709 (995)
9 2dfs_A Myosin-5A; myosin-V, in 100.0 4.9E-34 1.7E-38 271.4 7.7 140 11-151 546-717 (1080)
10 1g8x_A Myosin II heavy chain f 100.0 2.8E-34 9.7E-39 271.5 5.4 137 11-151 566-711 (1010)
11 1i84_S Smooth muscle myosin he 100.0 6E-34 2E-38 272.2 6.6 144 10-154 577-742 (1184)
12 1oeg_A Apolipoprotein E; siali 25.3 22 0.00075 18.9 0.7 18 78-95 3-20 (26)
No 1
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=8.7e-36 Score=273.10 Aligned_cols=129 Identities=18% Similarity=0.237 Sum_probs=110.6
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCccccccccCCccchHHHHHHHHHHH
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTVGLASQSRSQQTAATYFRYSLMEL 88 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~~~~~~~~~~~TV~skFr~~L~~L 88 (156)
..+.-.|++|.|.|++.+|||||||+|++++ +.++.+| +||++||++... ..++++.+||+++||.||++|
T Consensus 501 ~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~-~~ll~~S~~~~l~~lf~~~~~------~~~~~r~~Tv~~~fk~sL~~L 573 (697)
T 1lkx_A 501 TCFRLKHYAGDVTYDVRGFLDKNKDTLFGDL-ISSMQSSSDPLVQGLFPPTRP------EDSKKRPETAGSQFRNAMNAL 573 (697)
T ss_dssp TEEEEEETTEEEEEECTTHHHHHHCCCCHHH-HHHHHTCCSHHHHHHCC-----------------CCHHHHHHHHHHHH
T ss_pred CceeeeeeeeEEEEccCChhhhhcccccHHH-HHHHhccchHHHHHhcccccc------ccccCCCCcHHHHHHHHHHHH
Confidence 5677889999999999999999999999999 7888777 899999986442 123456789999999999999
Q ss_pred HHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHHHHH
Q psy12964 89 LQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCAILS 146 (156)
Q Consensus 89 m~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~~~~ 146 (156)
|++|.+|+||||||||||+.|.|+.||..+|++||||+||+|++||++ |||+|+.|..
T Consensus 574 m~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~e 632 (697)
T 1lkx_A 574 ITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEYTR 632 (697)
T ss_dssp HHHHTTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHHTSHHHHHHHHHSCSBCCBSHH
T ss_pred HHHHHccCCcceEeecCCCcCCCCCcChhhccccCcccccHHHHHHHhcCCCccccHHH
Confidence 999999999999999999999999999999999999999999999999 9998665433
No 2
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=2e-35 Score=273.32 Aligned_cols=143 Identities=26% Similarity=0.324 Sum_probs=109.0
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCc---c--ccccccCCccchHHHHHH
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSST---V--GLASQSRSQQTAATYFRY 83 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~---~--~~~~~~~~~~TV~skFr~ 83 (156)
..+.-.|++|-|.|++.+|||||||+|++++ +.++.+| +||++||++...... . +.+.++.+++||+++||.
T Consensus 575 ~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~-~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~Tv~~~fk~ 653 (783)
T 4db1_A 575 AHFSLIHYAGIVDYNIIGWLQKNKDPLNETV-VGLYQKSSLKLLSTLFANYAGADAPIEKGKGKAKKGSSFQTVSALHRE 653 (783)
T ss_dssp CCEEEEETTEEEEECCTTHHHHHHCCCCHHH-HHHHHTCSSHHHHHHHHSCC------------------CCCHHHHHHH
T ss_pred CCeEEeCcCCceEEeCcChhhhccccccHHH-HHHHHHCccHHHHHHhhccccccccccCccCCCCcCCCCccHHHHHHH
Confidence 4577788999999999999999999999999 8888777 899999986432111 0 111122346899999999
Q ss_pred HHHHHHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcc------hHHHHHHHhhhhcC
Q psy12964 84 SLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLS------LCAILSLKLLRLLP 154 (156)
Q Consensus 84 ~L~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~------~~~~~~~~~~~~~~ 154 (156)
||+.||++|.+|+||||||||||+.|.|+.||..+|++||||+||+|+|||++ |||+ |..||.++.-..+|
T Consensus 654 sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~ 731 (783)
T 4db1_A 654 NLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRILYGDFRQRYRILNPAAIP 731 (783)
T ss_dssp HHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHHTSCCEEEEC----------------
T ss_pred HHHHHHHHHHccCCEEEEeeCCCcccCCCcccchhhheeccccChHhheeehhcCCCccCcHHHHHHHHHHhCccccC
Confidence 99999999999999999999999999999999999999999999999999999 9997 45577777665554
No 3
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=3.9e-35 Score=271.57 Aligned_cols=133 Identities=18% Similarity=0.238 Sum_probs=110.2
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCcccc-ccccCCccchHHHHHHHHHH
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTVGL-ASQSRSQQTAATYFRYSLME 87 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~~~-~~~~~~~~TV~skFr~~L~~ 87 (156)
..+.-.|++|-|.|++.+|||||+|+|++++ +.++.+| +||++||+........++ .+++.+..||+++|+.||++
T Consensus 571 ~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~-~~ll~~S~~~~l~~Lf~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~ 649 (784)
T 2v26_A 571 EGFIIRHFAGAVCYETTQFVEKNNDALHMSL-ESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNL 649 (784)
T ss_dssp SEEEEEETTEEEEEECTTHHHHTBCCCCHHH-HHHHHTCSCHHHHHHC----------------CCCCBHHHHHHHHHHH
T ss_pred CceEeeecCccEeeeccCHHHhccchhhHHH-HHHHHhchhhHHHHHcccccccccCcccCCCCCccccHHHHHHHHHHH
Confidence 4677889999999999999999999999999 7888777 899999987532211111 12334568999999999999
Q ss_pred HHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHHH
Q psy12964 88 LLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCAI 144 (156)
Q Consensus 88 Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~~ 144 (156)
||++|.+|+||||||||||+.|.|+.||..+|++||||+||+|++||++ |||+|+.|
T Consensus 650 Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f 707 (784)
T 2v26_A 650 LLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASF 707 (784)
T ss_dssp HHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHTTHHHHHHHHTSCCSEEEEH
T ss_pred HHHHHHccCCeeEEEecCCcccccCccccccccccccccccHHHHHHHHhcCCccccH
Confidence 9999999999999999999999999999999999999999999999999 99976554
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=5.7e-35 Score=270.78 Aligned_cols=142 Identities=22% Similarity=0.278 Sum_probs=112.7
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc---cccccccCCCCCCCcc--------------------c-
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT---IVLSPLLQDKSDSSTV--------------------G- 66 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S---~ll~~Lf~~~~~~~~~--------------------~- 66 (156)
..+.-.|++|.|.|++.+|||||||+|++++ +.++.+| +||++||++....... +
T Consensus 546 ~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~-~~ll~~S~~~~~v~~lf~~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~ 624 (795)
T 1w7j_A 546 KAFIIKHFADKVEYQCEGFLEKNKDTVYEEQ-IKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKAR 624 (795)
T ss_dssp SEEEEECSSCEEEEECTTHHHHHHCCCCHHH-HHHHHTCSSCSHHHHTTC------------------------------
T ss_pred CceEEEecceEEEEechhHHhhccccccHHH-HHHHHhccccHHHHHHhccccccccccccccccccccccccccccccc
Confidence 4677789999999999999999999999999 7777544 7999999864311000 0
Q ss_pred -cccccCCccchHHHHHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchH--
Q psy12964 67 -LASQSRSQQTAATYFRYSLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLC-- 142 (156)
Q Consensus 67 -~~~~~~~~~TV~skFr~~L~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~-- 142 (156)
...++.+++||+++|+.||++||++|.+|+||||||||||+.|.|+.||..+|++||||+||+|++||++ |||+|+
T Consensus 625 ~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f 704 (795)
T 1w7j_A 625 PGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTY 704 (795)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHTTHHHHHHHHHHSCCEEEEH
T ss_pred cccccCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCcCChhhcCcccccchhhhCChHHHHHHHHcCCCccccH
Confidence 0123456799999999999999999999999999999999999999999999999999999999999999 999754
Q ss_pred ----HHHHHHhhhhc
Q psy12964 143 ----AILSLKLLRLL 153 (156)
Q Consensus 143 ----~~~~~~~~~~~ 153 (156)
.||.++.-..+
T Consensus 705 ~eF~~RY~~L~~~~~ 719 (795)
T 1w7j_A 705 QEFFSRYRVLMKQKD 719 (795)
T ss_dssp HHHHHHHGGGSCGGG
T ss_pred HHHHHHHHHhCCccc
Confidence 45666554433
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=3.4e-35 Score=271.37 Aligned_cols=139 Identities=22% Similarity=0.256 Sum_probs=112.9
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCccccccccCCccchHHHHHHHHHHH
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTVGLASQSRSQQTAATYFRYSLMEL 88 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~~~~~~~~~~~TV~skFr~~L~~L 88 (156)
..+.-.|++|-|.|++.+|||||||+|++++ +.++.+| +||++||++... .+...++.+++||+++|+.||+.|
T Consensus 566 ~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~-~~ll~~S~~~~v~~Lf~~~~~---~~~~~k~~~~~Tv~~~fk~sL~~L 641 (770)
T 1w9i_A 566 TEFGVTHYAGQVMYEIQDWLEKNKDPLQQDL-ELCFKDSSDNVVTKLFNDPNI---ASRAKKGANFITVAAQYKEQLASL 641 (770)
T ss_dssp SEEEEEETTEEEEEECTTHHHHHHCCCCHHH-HHHHHTCSSTTHHHHHHCHHH---HCCCEETTEECCHHHHHHHHHHHH
T ss_pred CceEeeccCccccccccChhhhccCcccHHH-HHHHHhchHHHHHHHhhccCC---CCCCCCCCCCcchhHHHHHHHHHH
Confidence 5677889999999999999999999999999 7888777 899999986431 122223345799999999999999
Q ss_pred HHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcch------HHHHHHHhhhhcC
Q psy12964 89 LQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSL------CAILSLKLLRLLP 154 (156)
Q Consensus 89 m~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~------~~~~~~~~~~~~~ 154 (156)
|++|.+|+||||||||||+.|.|+.||..+|++||||+||+|++||++ |||+| ..||.++.- .+|
T Consensus 642 m~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~-~~~ 713 (770)
T 1w9i_A 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAP-NVP 713 (770)
T ss_dssp HHHHHTSEEEEEEEECSCSSCCSSCCCHHHHHHHHHHSSHHHHHHHTTSSCCEEEESCC--------------
T ss_pred HHHHHhcCceeeeeecCCcccccCccCchhhHhHhcccchHHHHHHHHhcCcccccHHHHHHHHHHhcc-ccc
Confidence 999999999999999999999999999999999999999999999999 99974 456776654 443
No 6
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=4.7e-35 Score=272.56 Aligned_cols=144 Identities=25% Similarity=0.287 Sum_probs=112.5
Q ss_pred cccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCcccccccc--CCccchHHHHHHHH
Q psy12964 10 MNLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTVGLASQS--RSQQTAATYFRYSL 85 (156)
Q Consensus 10 ~~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~~~~~~~--~~~~TV~skFr~~L 85 (156)
-..+.-.|++|-|.|++.+|||||+|+|++++ +.++.+| +||++||++.......+...++ .+++||+++|+.||
T Consensus 575 ~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~-~~ll~~S~~~~v~~Lf~~~~~~~g~~~~~k~~~~~~~Tv~~~fk~sL 653 (837)
T 1kk8_A 575 PAHFELHHYAGNVPYSITGWLEKNKDPINENV-VALLGASKEPLVAELFKAPEEPAGGGKKKKGKSSAFQTISAVHRESL 653 (837)
T ss_dssp CCSEEEEETTEEEEECCSSHHHHHSCCCCHHH-HHHHHTCSSHHHHHHTCC------------------CCHHHHHHHHH
T ss_pred CCceEEeeccCcccccHHHHHHhccccccHHH-HHHHHhchHHHHHHHhcccccccCCCCCCCCCCCCCCchHHHHHHHH
Confidence 45778889999999999999999999999999 8888777 8999999874321101111122 35789999999999
Q ss_pred HHHHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcc------hHHHHHHHhhhhcC
Q psy12964 86 MELLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLS------LCAILSLKLLRLLP 154 (156)
Q Consensus 86 ~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~------~~~~~~~~~~~~~~ 154 (156)
++||++|.+|+||||||||||+.|.|+.||..+|++||||+||+|++||++ |||+ |..||.++.-..+|
T Consensus 654 ~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~f~eF~~RY~~L~~~~~~ 729 (837)
T 1kk8_A 654 NKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIP 729 (837)
T ss_dssp HHHHHHHTTEEEEEEEEECCCSSCCTTCCCHHHHHHHHTTSSSCC-----CCCSCEEEEHHHHHHHHGGGSGGGCC
T ss_pred HHHHHHHHccCCeeeeeeCCCccCCcccccchheeeeccccCccHHHHHHHHhccccccHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999999999999 9997 45567777665555
No 7
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=9.1e-35 Score=275.45 Aligned_cols=133 Identities=18% Similarity=0.239 Sum_probs=110.1
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCcc-ccccccCCccchHHHHHHHHHH
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTV-GLASQSRSQQTAATYFRYSLME 87 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~-~~~~~~~~~~TV~skFr~~L~~ 87 (156)
..+.-.|++|-|.|++.+|||||+|+|++++ +.++.+| +||++||++....... +...++.++.||+++|+.||+.
T Consensus 575 ~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~-~~ll~~S~~~~i~~Lf~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~ 653 (1052)
T 4anj_A 575 EGFIIRHFAGAVCYETTQFVEKNNDALHMSL-ESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNL 653 (1052)
T ss_dssp SEEEEEETTEEEEEECTTHHHHHBCCCCHHH-HHHHHTCSCHHHHHTTCC----------------CCBHHHHHHHHHHH
T ss_pred CCeEEEcCCccEEEecCChhhhccccccHHH-HHHHHhCCcHHHHHhhhccccccccccCCCCCCCCccHHHHHHHHHHH
Confidence 3467788999999999999999999999999 8888777 8999999875432221 1223345678999999999999
Q ss_pred HHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHHH
Q psy12964 88 LLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCAI 144 (156)
Q Consensus 88 Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~~ 144 (156)
||++|.+|+||||||||||+.|.|+.||..+|++||||+||+|+|||++ |||+|+.|
T Consensus 654 Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvLE~irI~r~Gyp~R~~f 711 (1052)
T 4anj_A 654 LLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASF 711 (1052)
T ss_dssp HHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHHTHHHHHHHTTTCCCEEEEH
T ss_pred HHHHHcCcCCEEEEEECCCccCCCCcCCHHHHHHHHHHhhHHHHHHHHhcCCCCcCcH
Confidence 9999999999999999999999999999999999999999999999999 99975543
No 8
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=1.8e-34 Score=272.64 Aligned_cols=143 Identities=19% Similarity=0.205 Sum_probs=120.7
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCc--------c---ccccccCCccch
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSST--------V---GLASQSRSQQTA 77 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~--------~---~~~~~~~~~~TV 77 (156)
..+.-.|++|-|.|++.+|||||+|+|++++ +.++.+| +||++||+....... . |...++++++||
T Consensus 547 ~~F~i~HyAG~V~Y~~~gfleKN~D~l~~~~-~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~tv 625 (995)
T 2ycu_A 547 ADFSVLHYAGKVDYKANEWLMKNMDPLNDNV-AALLHQSTDRLTAEIWKDVEGIVGLEQVSSLGDGPPGGRPRRGMFRTV 625 (995)
T ss_dssp SSEEEEETTEEEEECCTTHHHHHHCCCCHHH-HHHHHTCSSHHHHHHTSSCCSSCSCCC-------------CCCSSCCH
T ss_pred CeeEEECCCCCccccccchhhhccccccHHH-HHHHHhCcHHHHHHHhhcccccccccccccccccccccCcCCCCCCch
Confidence 5677889999999999999999999999999 8888777 899999987442110 0 112234567899
Q ss_pred HHHHHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcc------hHHHHHHHhh
Q psy12964 78 ATYFRYSLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLS------LCAILSLKLL 150 (156)
Q Consensus 78 ~skFr~~L~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~------~~~~~~~~~~ 150 (156)
+++|+.||+.||++|.+|+||||||||||+.|.|+.||..+|++||||+||+|++||++ |||+ |..||.++.-
T Consensus 626 ~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~r~~~~~F~~RY~~L~~ 705 (995)
T 2ycu_A 626 GQLYKESLSRLMATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGIRICRQGFPNRILFQEFRQRYEILTP 705 (995)
T ss_dssp HHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCTTTHHHHHHHHTHHHHHHHHHHSCCEEEEHHHHHHHHGGGST
T ss_pred HHHHHHHHHHHHHHHHhcCcceeeeecCCccccccccCHHHHHHHhcccchHHHHHHHHhcCCccccHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999 9997 4556777766
Q ss_pred hhcC
Q psy12964 151 RLLP 154 (156)
Q Consensus 151 ~~~~ 154 (156)
..+|
T Consensus 706 ~~~~ 709 (995)
T 2ycu_A 706 NAIP 709 (995)
T ss_dssp TTSC
T ss_pred cccc
Confidence 6555
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=4.9e-34 Score=271.39 Aligned_cols=140 Identities=22% Similarity=0.295 Sum_probs=113.0
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc---cccccccCCCCCCCcc--------------------c-
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT---IVLSPLLQDKSDSSTV--------------------G- 66 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S---~ll~~Lf~~~~~~~~~--------------------~- 66 (156)
..+.-.|++|.|.|++.+|||||+|+|++++ +.++.+| +||+.||+........ +
T Consensus 546 ~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~-~~ll~~S~~~~~v~~lf~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 624 (1080)
T 2dfs_A 546 KAFIIKHFADKVEYQCEGFLEKNKDTVYEEQ-IKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKAR 624 (1080)
T ss_dssp SEEEEECSSCEEEEECTTHHHHHBCCCCHHH-HHHHHTCSSCSHHHHSCC------------------------------
T ss_pred CceEEEecceEEEEehhhHHHhccccccHHH-HHHHHcccccHHHHHHhccccccccccccccccccccccccccccccc
Confidence 4677789999999999999999999999999 7777544 8999999864311100 0
Q ss_pred -cccccCCccchHHHHHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHH-
Q psy12964 67 -LASQSRSQQTAATYFRYSLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCA- 143 (156)
Q Consensus 67 -~~~~~~~~~TV~skFr~~L~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~- 143 (156)
...++.+++||+++|+.||+.||++|.+|+||||||||||+.|.|+.||..+|++||||+||+|++||++ |||+|+.
T Consensus 625 ~~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~ 704 (1080)
T 2dfs_A 625 PGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTY 704 (1080)
T ss_dssp -------CCCBHHHHHHHHHHHHHHHHHSSEEEEEEEECCCSSCCTTCCCHHHHHHHHHTTTHHHHHHHHTTSCCEEEEH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeEEEecCCCCCCchhcCHHhhHHHHhhcccHHHHhHHhcCCCchhhH
Confidence 0123456799999999999999999999999999999999999999999999999999999999999999 9997554
Q ss_pred -----HHHHHhhh
Q psy12964 144 -----ILSLKLLR 151 (156)
Q Consensus 144 -----~~~~~~~~ 151 (156)
||.++.-.
T Consensus 705 ~eF~~RY~~L~~~ 717 (1080)
T 2dfs_A 705 QEFFSRYRVLMKQ 717 (1080)
T ss_dssp HHHHHHHTTTSCG
T ss_pred HHHHHHHHHHCCc
Confidence 55555433
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=2.8e-34 Score=271.51 Aligned_cols=137 Identities=21% Similarity=0.250 Sum_probs=118.3
Q ss_pred ccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCccccccccCCccchHHHHHHHHHHH
Q psy12964 11 NLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSSTVGLASQSRSQQTAATYFRYSLMEL 88 (156)
Q Consensus 11 ~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~~~~~~~~~~~~TV~skFr~~L~~L 88 (156)
..+.-.|++|-|.|++.+|||||+|+|++++ +.++.+| +||++||++.. ..++..++++++||+++|+.||+.|
T Consensus 566 ~~F~i~HyAG~V~Y~~~gfleKN~D~l~~~~-~~ll~~S~~~~~~~lf~~~~---~~~~~~k~~~~~tv~~~fk~sL~~L 641 (1010)
T 1g8x_A 566 TEFGVTHYAGQVMYEIQDWLEKNKDPLQQDL-ELCFKDSSDNVVTKLFNDPN---IASRAKKGANFITVAAQYKEQLASL 641 (1010)
T ss_dssp SEEEEEETTEEEEEECTTHHHHHHCCCCHHH-HHHHTTCSCHHHHHHHHCHH---HHSCCCCSSSCCCHHHHHHHHHHHH
T ss_pred CCEEEeeeceEEEEeecCccccccccccHHH-HHHHHhCcHHHHHHHhcccc---cccCCCCCCCCCchHHHHHHHHHHH
Confidence 4677889999999999999999999999999 8888777 89999998643 1111233456799999999999999
Q ss_pred HHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchH------HHHHHHhhh
Q psy12964 89 LQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLC------AILSLKLLR 151 (156)
Q Consensus 89 m~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~------~~~~~~~~~ 151 (156)
|++|.+|+||||||||||+.|.|+.||..+|++||||+||+|++||++ |||+|+ .||.++.-.
T Consensus 642 m~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~r~~~~~F~~RY~~L~~~ 711 (1010)
T 1g8x_A 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPN 711 (1010)
T ss_dssp HHHHTTSEEEEEEEECSCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHTTSCCEEEEHHHHHHHHGGGSTT
T ss_pred HHHHHhcCCeeeeeecCCcccccCCcChhhcchhcccCccHHHHHHHHhCCcccccHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999 999754 456655443
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=6e-34 Score=272.19 Aligned_cols=144 Identities=20% Similarity=0.263 Sum_probs=117.3
Q ss_pred cccccccccCceEEecccccccCCcchHHHHHHHHhhhhc--cccccccCCCCCCCc---------c--cc--ccccCCc
Q psy12964 10 MNLCCRGSVDGWTVQSTSIDVNRCRDVDRRAVDYGYFIHT--IVLSPLLQDKSDSST---------V--GL--ASQSRSQ 74 (156)
Q Consensus 10 ~~~~~~~~~~g~~~~~t~~fleKNkD~L~~~l~~~~~~~S--~ll~~Lf~~~~~~~~---------~--~~--~~~~~~~ 74 (156)
-..+.-.||+|-|.|++.+|||||+|+|++++ +.++.+| +||+.||+....... . |. ..+++++
T Consensus 577 ~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~-~~ll~~s~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (1184)
T 1i84_S 577 KTEFCILHYAGKVTYNASAWLTKNMDPLNDNV-TSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMF 655 (1184)
T ss_dssp TCEEEEECSSCEEEEECTTHHHHHHCCCCHHH-HHHHHTCSCHHHHHHHSCCTTCCCC---------------------C
T ss_pred CCcEEEECCCceEEeccCCchhhccCcccHHH-HHHHHhCchHHHHHHhccccccccccccccccccccCccccccCCCC
Confidence 35677889999999999999999999999999 7888777 899999987432110 0 10 1233456
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCChHHHHHHHHhhchHHHHhhhc-CCcchHHH------HHH
Q psy12964 75 QTAATYFRYSLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTGVLACNASCL-GHLSLCAI------LSL 147 (156)
Q Consensus 75 ~TV~skFr~~L~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~~-gyp~~~~~------~~~ 147 (156)
+||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|++||||+||+|+|||++ |||+|+.| |.+
T Consensus 656 ~tv~~~f~~~l~~L~~~l~~t~phfvRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~ry~~ 735 (1184)
T 1i84_S 656 RTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEI 735 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSEEEECCEECCCSSCCSSCCCHHHHHHHHHHTTHHHHHHHHHHSCCEEEEHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCCceeeeCCCCcCCCCcccHHHHHHHHhhcCchHHHHhHhhcCcccccHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999998 99986654 555
Q ss_pred HhhhhcC
Q psy12964 148 KLLRLLP 154 (156)
Q Consensus 148 ~~~~~~~ 154 (156)
+.-..+|
T Consensus 736 L~~~~~~ 742 (1184)
T 1i84_S 736 LAANAIP 742 (1184)
T ss_dssp TCTTTSC
T ss_pred hccccCC
Confidence 4444444
No 12
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=25.31 E-value=22 Score=18.89 Aligned_cols=18 Identities=6% Similarity=0.185 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy12964 78 ATYFRYSLMELLQRIVSG 95 (156)
Q Consensus 78 ~skFr~~L~~Lm~~L~~t 95 (156)
+.+.|.|+..||+.++.+
T Consensus 3 ~e~mr~Q~~~lveKvq~a 20 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQAA 20 (26)
T ss_dssp HHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457788999999988764
Done!