RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12964
         (156 letters)



>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 82.0 bits (202), Expect = 2e-19
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 51  VLSPLLQDKSDSSTVGLASQSRSQQTAATYFRYSLMELLQRIVSGTPQFVRCIKPNELGI 110
           V++ L  D + +S    A +  +  T A  ++  L  L+  + +  P FVRCI PN   +
Sbjct: 560 VVTKLFNDPNIASR---AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQL 616

Query: 111 PNSFDRCKVIKQLRYTGVL 129
           P   +   V+ QLR  GVL
Sbjct: 617 PAKLEDKVVLDQLRCNGVL 635


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 81.7 bits (201), Expect = 2e-19
 Identities = 20/71 (28%), Positives = 31/71 (43%)

Query: 59  KSDSSTVGLASQSRSQQTAATYFRYSLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRCK 118
              S      ++    +T    ++  L +L+  + +  P FVRCI PN        D   
Sbjct: 562 TESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHL 621

Query: 119 VIKQLRYTGVL 129
           V++QLR  GVL
Sbjct: 622 VLEQLRCNGVL 632


>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 79.7 bits (196), Expect = 8e-19
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 68  ASQSRSQQTAATYFRYSLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRCKVIKQLRYTG 127
               +  +TA + FR ++  L+  +++ +P +VRCIK N+       D  +V  Q+RY G
Sbjct: 545 EDSKKRPETAGSQFRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLG 604

Query: 128 VL 129
           +L
Sbjct: 605 LL 606


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 74.4 bits (182), Expect = 6e-17
 Identities = 24/71 (33%), Positives = 38/71 (53%)

Query: 59  KSDSSTVGLASQSRSQQTAATYFRYSLMELLQRIVSGTPQFVRCIKPNELGIPNSFDRCK 118
              +      +    ++T    FR SL  L++ + + TP +VRCIKPN+   P +FD  +
Sbjct: 556 VKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKR 615

Query: 119 VIKQLRYTGVL 129
            ++QLR  GVL
Sbjct: 616 AVQQLRACGVL 626


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 70.5 bits (172), Expect = 2e-15
 Identities = 26/84 (30%), Positives = 40/84 (47%)

Query: 46  FIHTIVLSPLLQDKSDSSTVGLASQSRSQQTAATYFRYSLMELLQRIVSGTPQFVRCIKP 105
            +  +  +   + +      G   +  S QT +  FR +L +L+  + S  P FVRCI P
Sbjct: 569 TLALLFATYGGEAEGGGGKKGGKKKGSSFQTVSALFRENLNKLMANLRSTHPHFVRCIIP 628

Query: 106 NELGIPNSFDRCKVIKQLRYTGVL 129
           NE   P + +   V+ QLR  GVL
Sbjct: 629 NETKTPGAMEHELVLHQLRCNGVL 652


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 67.0 bits (163), Expect = 2e-14
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 51  VLSPLLQDKSDSSTVGL--ASQSRSQQTAATYFRYSLMELLQRIVSGTPQFVRCIKPNEL 108
           +++ L +   + +  G     +S + QT +   R SL +L++ + S  P FVRCI PNEL
Sbjct: 569 LVAELFKAPEEPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNEL 628

Query: 109 GIPNSFDRCKVIKQLRYTGVL 129
             P   D   V+ QL+  GVL
Sbjct: 629 KQPGLVDAELVLHQLQCNGVL 649


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 551,700
Number of extensions: 21851
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 6
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.1 bits)