BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12965
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From
Mus Musculus
Length = 151
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 88/134 (65%)
Query: 6 VCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQP 65
VC++D ++KE L+KFRFRK +NAA+I+KVD+++Q + ++D ++++S +EL+ LP QP
Sbjct: 13 VCEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISPEELKLELPERQP 72
Query: 66 RYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLXXXXXXXXX 125
R+VVYS + H DGRVSYP+ FI+ +P + Q+MYAG+K L Q A+L
Sbjct: 73 RFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTT 132
Query: 126 XXXXXXWLKSCLAG 139
WLK LA
Sbjct: 133 DDLTETWLKEKLAS 146
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg)
From Mus Musculus At 1.50 A Resolution
Length = 154
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 88/133 (66%)
Query: 6 VCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQP 65
VC++D ++KE L+KFRFRK +NAA+I+KVD+++Q + ++D ++++S +EL+ LP QP
Sbjct: 19 VCEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISPEELKLELPERQP 78
Query: 66 RYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLXXXXXXXXX 125
R+VVYS + H DGRVSYP+ FI+ +P + Q+MYAG+K L Q A+L
Sbjct: 79 RFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTT 138
Query: 126 XXXXXXWLKSCLA 138
WLK LA
Sbjct: 139 DDLTETWLKEKLA 151
>pdb|1V6F|A Chain A, Solution Structure Of Glia Maturation Factor-Beta From Mus
Musculus
Length = 151
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 86/133 (64%)
Query: 6 VCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQP 65
VCD+ +D+ E L+KFRFRK NAA+I+K+D++++ + +D+ +E VS DEL+D LP QP
Sbjct: 13 VCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELEGVSPDELKDELPERQP 72
Query: 66 RYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLXXXXXXXXX 125
R++VYS + +H DGRVSYP+ FI+ +P + Q+MYAG+K L Q A+L
Sbjct: 73 RFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNT 132
Query: 126 XXXXXXWLKSCLA 138
WL+ L
Sbjct: 133 EDLTEEWLREKLG 145
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
pdb|3L50|B Chain B, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
Length = 136
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 85/133 (63%)
Query: 6 VCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQP 65
VC++D ++ E L+KFRFRK NAA+I+KVD+++Q + +++ +++S +EL+ LP QP
Sbjct: 3 VCEVDPELTEKLRKFRFRKETDNAAIIMKVDKDRQMVVLEEEFQNISPEELKMELPERQP 62
Query: 66 RYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLXXXXXXXXX 125
R+VVYS + H DGRVSYP+ FI+ +P + Q+MYAG+K L Q A+L
Sbjct: 63 RFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTT 122
Query: 126 XXXXXXWLKSCLA 138
WL+ L+
Sbjct: 123 DDLTEAWLQEKLS 135
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin
Length = 137
Score = 33.1 bits (74), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 15 EALKKFR-FRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCR 73
E L+ F+ + +S ++ K++ K I ++ D D LP RY +Y
Sbjct: 11 ECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEKDCRYAIYDFE 70
Query: 74 MEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQ 112
G+G V + FI +P A + +++Y+ +K L++
Sbjct: 71 FNLGEG-VRNKIIFISWSPDVAPIKSKMVYSSSKDTLRR 108
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma
Gondii (Tgadf)
Length = 139
Score = 32.3 bits (72), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 52 SLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQ 111
+ DE R LP++ R+ VY C + F+ P +A + ++ YA +K AL
Sbjct: 66 NADEFRGALPANDCRFGVYDC---------GNKIQFVLWCPDNAPVKPRMTYASSKDALL 116
Query: 112 QEAD 115
++ D
Sbjct: 117 KKLD 120
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana
Length = 139
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/108 (18%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 9 IDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDV-SLDELRDILPSHQPRY 67
+ DD K L+ + +++ ++ K++ +++++ ++ + + + + +E LP+ + RY
Sbjct: 10 VHDDCK--LRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRY 67
Query: 68 VVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEAD 115
+Y + + FI P A++ +++YA +K ++E D
Sbjct: 68 AIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELD 115
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure
pdb|1AK7|A Chain A, Destrin, Nmr, 20 Structures
Length = 174
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 4 VKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVS--LDELRDILP 61
V+ C +++K+ K F + +I++ E + I + D+ ++ +LP
Sbjct: 29 VRKCSTPEEIKKRKKAVIFCLSADKKCIIVE---EGKEILVGDVGVTITDPFKHFVGMLP 85
Query: 62 SHQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQE 113
RY +Y E + R M F++ P A + +++YA +K A++++
Sbjct: 86 EKDCRYALYDASFETKESRKEELMFFLW-APELAPLKSKMIYASSKDAIKKK 136
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin
Length = 166
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 60/123 (48%), Gaps = 20/123 (16%)
Query: 9 IDDDVKEALKKFRFRKAQS-------NAALILKVDREKQRICIDD----LMEDVSLDELR 57
++D+V + + RK+ + A++ + +K++I +++ L+ D+ D +
Sbjct: 7 VNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIG-DTVE 65
Query: 58 D-------ILPSHQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLAL 110
D +LP + RY +Y E + + + FI+ P A + +++YA +K A+
Sbjct: 66 DPYTAFVKLLPLNDCRYALYDATYETKESK-KEDLVFIFWAPESAPLKSKMIYASSKDAI 124
Query: 111 QQE 113
+++
Sbjct: 125 KKK 127
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin
pdb|1Q8X|A Chain A, Nmr Structure Of Human Cofilin
pdb|3J0S|M Chain M, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|O Chain O, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|N Chain N, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|Q Chain Q, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|P Chain P, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|S Chain S, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|R Chain R, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|U Chain U, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|T Chain T, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|W Chain W, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|V Chain V, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|X Chain X, Remodeling Of Actin Filaments By Adf Cofilin Proteins
Length = 166
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 11 DDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVS--LDELRDILPSHQPRYV 68
++VK+ K F ++ +IL E + I + D+ + V +LP RY
Sbjct: 27 EEVKKRKKAVLFCLSEDKKNIIL---EEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYA 83
Query: 69 VYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQE 113
+Y E + + + FI+ P A + +++YA +K A++++
Sbjct: 84 LYDATYETKESK-KEDLVFIFWAPESAPLKSKMIYASSKDAIKKK 127
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
pdb|2XFA|B Chain B, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
Length = 148
Score = 28.9 bits (63), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 21 RFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDI-------LPSHQPRYVVYSCR 73
R + N +I K++ ++I +D L D+ L L +I L + + RY++
Sbjct: 22 RLKVKHLNKYIIYKIEN-LEKIVVDVLEHDMELTSLDNIIMRIKNNLKNTECRYIIADMP 80
Query: 74 MEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEAD 115
+ +G + + FI+ +P ++ +++YA +K +L ++ +
Sbjct: 81 IPTPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKIN 122
>pdb|1AHQ|A Chain A, Recombinant Actophorin
Length = 137
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 50 DVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLA 109
+ + ++ + LP RY ++ + DG ++FI P A + ++MY TK +
Sbjct: 45 NATYEDFKSQLPERDCRYAIFDYEFQ-VDGGQRNKITFILWAPDSAPIKSKMMYTSTKDS 103
Query: 110 LQQE 113
++++
Sbjct: 104 IKKK 107
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga
Length = 137
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 50 DVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLA 109
+ + ++ + LP RY ++ + DG ++FI P A + ++MY TK +
Sbjct: 45 NATYEDFKSQLPERDCRYAIFDYEFQV-DGGQRNKITFILWAPDSAPIKSKMMYTSTKDS 103
Query: 110 LQQE 113
++++
Sbjct: 104 IKKK 107
>pdb|3CPX|A Chain A, Crystal Structure Of Putative M42 Glutamyl Aminopeptidase
(yp_676701.1) From Cytophaga Hutchinsonii Atcc 33406 At
2.39 A Resolution
pdb|3CPX|B Chain B, Crystal Structure Of Putative M42 Glutamyl Aminopeptidase
(yp_676701.1) From Cytophaga Hutchinsonii Atcc 33406 At
2.39 A Resolution
pdb|3CPX|C Chain C, Crystal Structure Of Putative M42 Glutamyl Aminopeptidase
(yp_676701.1) From Cytophaga Hutchinsonii Atcc 33406 At
2.39 A Resolution
Length = 321
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 68 VVYSCRMEHGDGRVSYPMSFIYIT 91
+ ++C EHG G V+Y +IY T
Sbjct: 185 IAFTCWEEHGGGSVAYLARWIYET 208
>pdb|2FVZ|A Chain A, Human Inositol Monophosphosphatase 2
pdb|2FVZ|B Chain B, Human Inositol Monophosphosphatase 2
pdb|2FVZ|C Chain C, Human Inositol Monophosphosphatase 2
pdb|2FVZ|D Chain D, Human Inositol Monophosphosphatase 2
Length = 273
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 45 DDLMEDVSLDELRDILPSHQ 64
D L+ED+ + ELR+ PSH+
Sbjct: 43 DHLVEDLIISELRERFPSHR 62
>pdb|2CZH|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase
2 (Impa2) With Phosphate Ion (Orthorhombic Form)
pdb|2CZH|B Chain B, Crystal Structure Of Human Myo-Inositol Monophosphatase
2 (Impa2) With Phosphate Ion (Orthorhombic Form)
pdb|2CZI|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase
2 (Impa2) With Calcium And Phosphate Ions
pdb|2CZK|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase
2 (Impa2) (Trigonal Form)
pdb|2DDK|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase
2 (Impa2) (Orthorhombic Form)
pdb|2DDK|B Chain B, Crystal Structure Of Human Myo-Inositol Monophosphatase
2 (Impa2) (Orthorhombic Form)
Length = 299
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 45 DDLMEDVSLDELRDILPSHQ 64
D L+ED+ + ELR+ PSH+
Sbjct: 69 DHLVEDLIISELRERFPSHR 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,350,395
Number of Sequences: 62578
Number of extensions: 113922
Number of successful extensions: 277
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 18
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)