Query psy12965
Match_columns 139
No_of_seqs 117 out of 897
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 15:39:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03216 actin depolymerizing 100.0 1E-42 2.2E-47 247.3 15.5 133 4-138 7-141 (141)
2 cd00013 ADF Actin depolymerisa 100.0 3.1E-38 6.8E-43 221.0 14.3 129 6-137 2-132 (132)
3 PF00241 Cofilin_ADF: Cofilin/ 100.0 2.2E-37 4.8E-42 215.5 14.9 125 11-138 1-127 (127)
4 KOG1735|consensus 100.0 3.6E-37 7.7E-42 216.8 10.7 133 5-139 3-142 (146)
5 smart00102 ADF Actin depolymer 100.0 4.5E-36 9.8E-41 209.4 14.8 125 11-138 1-127 (127)
6 PTZ00152 cofilin/actin-depolym 100.0 1.7E-33 3.7E-38 195.2 7.6 112 5-129 3-119 (122)
7 KOG1736|consensus 100.0 4.1E-31 8.9E-36 180.0 14.1 139 1-139 2-142 (143)
8 KOG1747|consensus 99.9 1.6E-25 3.4E-30 173.0 12.4 130 4-137 174-310 (342)
9 KOG1747|consensus 99.9 6.5E-22 1.4E-26 153.0 9.0 122 5-137 5-135 (342)
10 KOG3655|consensus 99.6 2.2E-15 4.8E-20 122.6 12.0 123 11-138 11-134 (484)
11 PRK11470 hypothetical protein; 46.6 67 0.0015 24.1 5.4 45 27-74 36-83 (200)
12 COG1888 Uncharacterized protei 38.6 80 0.0017 20.8 4.1 54 12-67 23-76 (97)
13 COG1761 RPB11 DNA-directed RNA 37.3 1.2E+02 0.0027 20.1 6.5 56 39-99 14-71 (99)
14 COG1753 Predicted antotoxin, c 37.1 39 0.00084 21.2 2.4 22 3-24 2-23 (74)
15 PF02680 DUF211: Uncharacteriz 37.0 58 0.0012 21.6 3.3 53 12-66 21-73 (95)
16 cd06535 CIDE_N_CAD CIDE_N doma 34.5 43 0.00092 21.3 2.3 36 33-70 34-69 (77)
17 KOG4037|consensus 30.7 1.5E+02 0.0033 22.1 5.0 46 28-73 86-136 (240)
18 PF02697 DUF217: Uncharacteriz 27.8 58 0.0013 20.3 2.1 19 4-22 1-19 (71)
19 PF01900 RNase_P_Rpp14: Rpp14/ 26.7 1E+02 0.0022 20.0 3.3 36 66-115 1-36 (107)
20 COG0432 Uncharacterized conser 25.9 2.4E+02 0.0053 19.9 5.5 58 5-66 17-76 (137)
21 PRK11347 antitoxin ChpS; Provi 23.4 2.1E+02 0.0045 18.2 5.3 52 5-64 12-63 (83)
22 KOG0444|consensus 23.2 1.7E+02 0.0037 26.7 4.8 49 64-115 527-575 (1255)
23 COG4892 Predicted heme/steroid 23.0 98 0.0021 19.5 2.4 21 52-72 5-25 (81)
24 PRK13623 iron-sulfur cluster i 22.5 2.3E+02 0.0049 18.8 4.5 21 2-22 5-25 (115)
25 TIGR01911 HesB_rel_seleno HesB 22.2 2.1E+02 0.0045 18.4 4.1 20 4-23 1-20 (92)
26 cd06539 CIDE_N_A CIDE_N domain 21.9 95 0.0021 19.8 2.3 34 33-66 34-67 (78)
27 PF11663 Toxin_YhaV: Toxin wit 20.3 1.4E+02 0.0031 21.1 3.1 26 66-98 80-106 (140)
28 PF06110 DUF953: Eukaryotic pr 20.3 38 0.00083 23.2 0.2 20 53-72 5-28 (119)
No 1
>PLN03216 actin depolymerizing factor; Provisional
Probab=100.00 E-value=1e-42 Score=247.35 Aligned_cols=133 Identities=18% Similarity=0.343 Sum_probs=124.3
Q ss_pred eeeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccC-CCChhHHHhcCCCCCCeEEEEeeeeeeCCCccc
Q psy12965 4 VKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLME-DVSLDELRDILPSHQPRYVVYSCRMEHGDGRVS 82 (139)
Q Consensus 4 ~~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~-~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~ 82 (139)
.++|+++++|+++|++|++++ .+|||+|+|+.++++|+|++.+. +.+|+||.+.||+++|||++|||++.+.+|+.+
T Consensus 7 ~SGi~v~~~c~~~f~~lk~~k--~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~ 84 (141)
T PLN03216 7 TTGMWVTDECKNSFMEMKWKK--VHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRK 84 (141)
T ss_pred CCCCeeCHHHHHHHHHHHhCC--CceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcc
Confidence 468999999999999999865 68999999999988999988753 458999999999999999999999999999999
Q ss_pred cCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcC-ceeEEEecCCCcCCHHHHHHhhc
Q psy12965 83 YPMSFIYITPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEELTEEWLKSCLA 138 (139)
Q Consensus 83 ~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~-i~~~~e~~d~~dl~~~~i~~kl~ 138 (139)
++++||+|||++|++|.||+|||||++|++.|+ +++++|++|.+||+++.+.++++
T Consensus 85 ~klvFI~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~~~~~~~~ 141 (141)
T PLN03216 85 SKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRAK 141 (141)
T ss_pred cCEEEEEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHHHHHHHhC
Confidence 999999999999999999999999999999997 99999999999999999999874
No 2
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=100.00 E-value=3.1e-38 Score=221.03 Aligned_cols=129 Identities=29% Similarity=0.466 Sum_probs=120.3
Q ss_pred eeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCC-CChhHHHhcCCCCCCeEEEEeeeeeeCCCccccC
Q psy12965 6 VCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMED-VSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYP 84 (139)
Q Consensus 6 ~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~-~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k 84 (139)
+++++++|.++|++|+.++ +++|++|+|+.++++|++++++.+ .++++|.+.||+++|||++||+++.+. |+.+++
T Consensus 2 gi~i~~e~~~a~~~~~~~~--~~~~vi~~i~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~-~~~~~k 78 (132)
T cd00013 2 GIKVSDECKEAFEELKSGK--KTRWIIFKIDDDKKEIVVEKTGEGGESFDEFVEELPEDECRYALYDYDFTTE-GSKKSK 78 (132)
T ss_pred CceECHHHHHHHHHHHhCC--ceeEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEecccCC-CccccC
Confidence 5899999999999999764 699999999998889999988865 589999999999999999999998776 788999
Q ss_pred eEEEEEeCCCCChhhHHHHHhhhHHHHhhcC-ceeEEEecCCCcCCHHHHHHhh
Q psy12965 85 MSFIYITPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEELTEEWLKSCL 137 (139)
Q Consensus 85 ~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~-i~~~~e~~d~~dl~~~~i~~kl 137 (139)
++||+|||++|++|.||+|||++.+|++.++ +++.+++++.+||+++.+.++|
T Consensus 79 ~vfI~w~P~~a~~k~km~yas~k~~l~~~l~~~~~~i~a~~~~dl~~~~i~~kl 132 (132)
T cd00013 79 IVFIYWSPETAPVKSKMLYASSKAALKRELVGIQVEVQATDPDELDEEALLEKL 132 (132)
T ss_pred EEEEEECCCCCChhhhhhhHHHHHHHHHhcCCceEEEEECChhhcCHHHHHhhC
Confidence 9999999999999999999999999999987 9999999999999999999876
No 3
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=100.00 E-value=2.2e-37 Score=215.54 Aligned_cols=125 Identities=30% Similarity=0.522 Sum_probs=115.5
Q ss_pred HHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeecc-CCCChhHHHhcCCCCCCeEEEEeeeeeeCCCccccCeEEEE
Q psy12965 11 DDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLM-EDVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFIY 89 (139)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~-~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~ 89 (139)
|+|.++|++|+.++ +++|++|+|+.++++|+|+++| .+.++++|.+.||+++|||++||+.+++. |+.+++++||+
T Consensus 1 ~e~~~~~~~~~~~~--~~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~-~~~~~k~vfI~ 77 (127)
T PF00241_consen 1 DECKAAFQELKSKK--STRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHK-GSRRSKLVFIY 77 (127)
T ss_dssp HHHHHHHHHHHTTT--SCSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEET-TSEEEEEEEEE
T ss_pred CHHHHHHHHHHcCC--CceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeeccc-CCCCceEEEEE
Confidence 68999999999875 5999999999998999999886 35689999999999999999999999886 67789999999
Q ss_pred EeCCCCChhhHHHHHhhhHHHHhhcC-ceeEEEecCCCcCCHHHHHHhhc
Q psy12965 90 ITPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEELTEEWLKSCLA 138 (139)
Q Consensus 90 w~Pd~a~vk~KMlYassk~~l~~~l~-i~~~~e~~d~~dl~~~~i~~kl~ 138 (139)
|||++||+|.||+|||++++|++.++ ++..++++|++||+++.|.+||+
T Consensus 78 w~P~~~~vk~km~yas~k~~l~~~l~~~~~~~~~~d~~dl~~~~i~~kl~ 127 (127)
T PF00241_consen 78 WCPDNAPVKEKMLYASSKASLKKKLGGIHIEIQASDPDDLSEEEILEKLK 127 (127)
T ss_dssp EESTTS-HHHHHHHHHHHHHHHHHCTTEEEEEEESSGGGGSHHHHHHHH-
T ss_pred EecCCccHHHhhhhHHhHHHHHHHhCCceEEEEECChHHCCHHHHHHhhC
Confidence 99999999999999999999999998 89999999999999999999985
No 4
>KOG1735|consensus
Probab=100.00 E-value=3.6e-37 Score=216.82 Aligned_cols=133 Identities=21% Similarity=0.389 Sum_probs=122.6
Q ss_pred eeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccC-CCChhHHHhcCC---CCCCeEEEEeeeeee-CC-
Q psy12965 5 KVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLME-DVSLDELRDILP---SHQPRYVVYSCRMEH-GD- 78 (139)
Q Consensus 5 ~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~-~~~~~el~~~L~---~~~pry~~~~~~~~~-~~- 78 (139)
+++.++|+|+..|++|+.++ .+|+++|+|+.+...|++++.|. +.++++|...|| .++|||++||+++.+ ..
T Consensus 3 SGv~Vsde~~~~F~elk~kk--~~r~ivF~i~~~~~~i~ve~~g~~~~s~~~f~~~l~~~~~~dCrYA~yDf~f~t~~~g 80 (146)
T KOG1735|consen 3 SGVAVSDECKKVFNELKVKK--RKRYVVFKISEDKKQIIVEKGGSPGASYDDFVASLPKMPEKDCRYALYDFEFETKESG 80 (146)
T ss_pred cceEecHHHHHHHHHHHhhc--ceeEEEEEeccccccccccccCCCCCchhhhHHHhccCCccccceEEecceEEeeccc
Confidence 67899999999999999876 79999999999888999998664 559999999999 999999999999998 44
Q ss_pred CccccCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcC-ceeEEEecCCCcCCHHHHHHhhcC
Q psy12965 79 GRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEELTEEWLKSCLAG 139 (139)
Q Consensus 79 g~~~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~-i~~~~e~~d~~dl~~~~i~~kl~~ 139 (139)
..+.+|++||.|||++||+|+||+|||++++|++.|. +++++|++|++|++++.|+++|++
T Consensus 81 ~~~~~Ki~f~~wsPd~a~vKsKMiYaSSkDalkr~L~Gi~~elQatd~~E~~~~~~~ekl~~ 142 (146)
T KOG1735|consen 81 NCKKSKIFFIAWSPDTAPVKSKMIYASSKDALKRELTGIQHELQATDPSEMSLDSLAEKLGG 142 (146)
T ss_pred cceeeeEEEEEECCCccchhhheeehhhHHHHhhhccCceeeeecCChHHhhHHHHHHHhcc
Confidence 3467899999999999999999999999999999997 999999999999999999999975
No 5
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=100.00 E-value=4.5e-36 Score=209.45 Aligned_cols=125 Identities=26% Similarity=0.500 Sum_probs=114.8
Q ss_pred HHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccC-CCChhHHHhcCCCCCCeEEEEeeeeeeCCCccccCeEEEE
Q psy12965 11 DDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLME-DVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFIY 89 (139)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~-~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~ 89 (139)
++|.++|++|++++ +++|++|+|+.++++|+|+..+. +.++++|.+.||+++|||++||+++++. ++++++++||+
T Consensus 1 ~~~~~~~~~~~~~~--~~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~-~~~~~k~vfI~ 77 (127)
T smart00102 1 EDCKEAFNELKKKR--KHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTE-ESKKSKIVFIF 77 (127)
T ss_pred ChHHHHHHHHHcCC--CceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccC-CCccccEEEEE
Confidence 47999999999865 59999999999999999988853 4589999999999999999999998775 45788999999
Q ss_pred EeCCCCChhhHHHHHhhhHHHHhhcC-ceeEEEecCCCcCCHHHHHHhhc
Q psy12965 90 ITPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEELTEEWLKSCLA 138 (139)
Q Consensus 90 w~Pd~a~vk~KMlYassk~~l~~~l~-i~~~~e~~d~~dl~~~~i~~kl~ 138 (139)
|||++|++|.||+|||++.+|++.++ ++..+++++.+||+++.|.++|.
T Consensus 78 w~P~~a~~~~km~yas~k~~l~~~l~~~~~~i~~~~~~el~~~~i~~kl~ 127 (127)
T smart00102 78 WSPDGAPVKSKMLYASSKDTLKKELGGIQVEVQATDEDDLDEEALKEKLK 127 (127)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEECChhhcCHHHHHHHhC
Confidence 99999999999999999999999998 99999999999999999999874
No 6
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=195.17 Aligned_cols=112 Identities=16% Similarity=0.288 Sum_probs=98.3
Q ss_pred eeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCC---CeEEEEeeeeeeCCCcc
Q psy12965 5 KVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQ---PRYVVYSCRMEHGDGRV 81 (139)
Q Consensus 5 ~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~---pry~~~~~~~~~~~g~~ 81 (139)
++|+++++|+++|++|+.++ .+|||+|+|++ ++|+|++.+++.+|++|.+.||+++ |||++|+++
T Consensus 3 SGi~v~de~~~~f~~lk~~k--~~r~iifkI~~--~~Ivv~~~~~~~~~~e~~~~L~~~~~~~crY~vyd~~-------- 70 (122)
T PTZ00152 3 SGIRVNDNCVTEFNNMKIRK--TCRWIIFVIEN--CEIIIHSKGATTTLTELVGSIDKNDKIQCAYVVFDAV-------- 70 (122)
T ss_pred CCcCcCHHHHHHHHHHhcCC--cceEEEEEEcC--cEEEEEecCCCCCHHHHHHhccccCCCCceEEEEccC--------
Confidence 56999999999999999865 69999999964 6899998887779999999999998 999999973
Q ss_pred ccCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcC-ce-eEEEecCCCcCC
Q psy12965 82 SYPMSFIYITPRDAQMALQIMYAGTKLALQQEAD-LT-RVYEVRELEELT 129 (139)
Q Consensus 82 ~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~-i~-~~~e~~d~~dl~ 129 (139)
++++||+|||++|++|.||+|||||++|+++++ ++ ...|+++..|+.
T Consensus 71 -~klvFI~w~Pd~a~ik~KMlYASsK~~l~~~l~Gi~~~~~~~~~~~~~~ 119 (122)
T PTZ00152 71 -NKIHFFMYARESSNSRDRMTYASSKQALLKKIEGVNVLTSVIESAQDVA 119 (122)
T ss_pred -CCEEEEEECCCCCChHHhhhhHhHHHHHHHHhcchhHHHHHHHHhhhhh
Confidence 479999999999999999999999999999986 53 556777776654
No 7
>KOG1736|consensus
Probab=99.97 E-value=4.1e-31 Score=179.98 Aligned_cols=139 Identities=45% Similarity=0.804 Sum_probs=128.1
Q ss_pred CCCeeeeecCHHHHHHHHHhhcc-cCCCccEEEEEEeCCCcEEEEee-ccCCCChhHHHhcCCCCCCeEEEEeeeeeeCC
Q psy12965 1 SQPVKVCDIDDDVKEALKKFRFR-KAQSNAALILKVDREKQRICIDD-LMEDVSLDELRDILPSHQPRYVVYSCRMEHGD 78 (139)
Q Consensus 1 ~~~~~~i~is~~~~~~~~~l~~~-~~~~~~~vi~~I~~~~~~I~v~~-~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~ 78 (139)
|.+.+++.|+++..+.+.++|.+ +......+++||+.+...|++++ ....++.+||.+.||+++|||++|.|++++.|
T Consensus 2 S~~~~~~~i~~et~~ki~kFR~r~k~t~~~A~imKidK~~~eiV~d~Eeld~is~eEladeLpe~~PRFvl~sYpt~t~D 81 (143)
T KOG1736|consen 2 SNSLVVCKIGTETREKIRKFRFRTKETSNAAIIMKIDKDSYEIVLDEEELDEISPEELADELPERQPRFVLYSYPTTTDD 81 (143)
T ss_pred CcceeEEEeCHHHHHHHHHhhhhhccccceeEEEEecCCceEeecCHHHhccCChHHHHhhccccCCcEEEEECcccccC
Confidence 45668999999999999999876 44468899999999999999984 44567889999999999999999999999999
Q ss_pred CccccCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcCceeEEEecCCCcCCHHHHHHhhcC
Q psy12965 79 GRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVYEVRELEELTEEWLKSCLAG 139 (139)
Q Consensus 79 g~~~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~i~~~~e~~d~~dl~~~~i~~kl~~ 139 (139)
|+.+++++||||.|-+|+.-.+|+||++|.-|.+..++++.+|+++-+|++++++.++|..
T Consensus 82 Gr~stPL~~Iyw~P~~~~~e~~MmYAgak~~~~~~~~~~KvfEir~tdD~t~e~l~E~L~~ 142 (143)
T KOG1736|consen 82 GRVSTPLCFIYWSPVGCKPEQQMMYAGAKNMLVQTAELTKVFEIRSTDDLTEEWLREKLEF 142 (143)
T ss_pred CcccccEEEEEecCccCCHHHHHHHHHHHHHHHHHhhheEEEEecccccccHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999863
No 8
>KOG1747|consensus
Probab=99.93 E-value=1.6e-25 Score=172.96 Aligned_cols=130 Identities=22% Similarity=0.363 Sum_probs=116.1
Q ss_pred eeeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeeeCCCcccc
Q psy12965 4 VKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSY 83 (139)
Q Consensus 4 ~~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~ 83 (139)
...+++++++..|+++|+.+ .++||+|.||..+|+|.|..+.+..+.+||...+|.+.|||.+|.|.+++ +|....
T Consensus 174 Gva~pi~~~a~kAl~~L~~~---~~n~vql~ID~~nE~I~l~~t~~~~e~sdL~s~vP~d~prY~ff~~~ht~-eGD~~e 249 (342)
T KOG1747|consen 174 GVAFPIDRNAEKALQDLKSS---KLNYVQLSIDLENETIQLSQTDTCTEPSDLPSRVPRDGPRYHFFLFKHTH-EGDPLE 249 (342)
T ss_pred ceeecccHHHHHHHHHHHhh---ccceEEEEeccccceeeeeccCCCCChHHhhhhcCCCCCceEEEeccccc-CCCCce
Confidence 46789999999999999964 49999999999999999998776578999999999999999999999887 455677
Q ss_pred CeEEEEEeCC-CCChhhHHHHHhhhHHHHh----hcC--ceeEEEecCCCcCCHHHHHHhh
Q psy12965 84 PMSFIYITPR-DAQMALQIMYAGTKLALQQ----EAD--LTRVYEVRELEELTEEWLKSCL 137 (139)
Q Consensus 84 k~vfI~w~Pd-~a~vk~KMlYassk~~l~~----~l~--i~~~~e~~d~~dl~~~~i~~kl 137 (139)
.++|||.||. +|+||+||+|||||..|.. .+| |.+++|++|.+||+++.+.+.+
T Consensus 250 s~~FIYS~P~~~~sVKeRMlYSScK~~fLd~~k~~~gi~i~kKiEi~d~~eLte~~L~e~~ 310 (342)
T KOG1747|consen 250 SIVFIYSMPGYGCSVKERMLYSSCKSGFLDSLKNDLGIVISKKIEIDDGAELTEKFLYEEL 310 (342)
T ss_pred eEEEEEECCCCCcchhhhhHhhhcchhHHHHHHHhcCeeEEEEEeeCcHHHhhHHHHHHhh
Confidence 9999999999 9999999999999987754 577 6799999999999999887664
No 9
>KOG1747|consensus
Probab=99.87 E-value=6.5e-22 Score=152.99 Aligned_cols=122 Identities=19% Similarity=0.263 Sum_probs=98.8
Q ss_pred eeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCC-----CChhHHHh-cCCCCCCeEEEEeeeeeeCC
Q psy12965 5 KVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMED-----VSLDELRD-ILPSHQPRYVVYSCRMEHGD 78 (139)
Q Consensus 5 ~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~-----~~~~el~~-~L~~~~pry~~~~~~~~~~~ 78 (139)
.+|..++++...|++-+.+ +.|.+..-|++ +++.+..+.++ .+|+.++. .|.+.+|||++|+++..
T Consensus 5 tGI~A~e~l~~~l~~~~~~---k~R~ikIvI~n--Eql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrlds~--- 76 (342)
T KOG1747|consen 5 TGIRATEALKKFLNEAKNG---KLRLIKIVIEN--EQLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLDSK--- 76 (342)
T ss_pred cccchHHHHHHHHHhcccC---ceEEEEEEEec--ccccCCccccccccHHHHHHHHHHHhhccCCceEEEEeecCC---
Confidence 5678889999999988864 46766655554 57887765542 26777764 55678999999999753
Q ss_pred CccccCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcC---ceeEEEecCCCcCCHHHHHHhh
Q psy12965 79 GRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEAD---LTRVYEVRELEELTEEWLKSCL 137 (139)
Q Consensus 79 g~~~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~---i~~~~e~~d~~dl~~~~i~~kl 137 (139)
.++|+||.|+||+||||+||+||||+++|++.+| +..+..+++++||+...+..-|
T Consensus 77 ---~~~w~lIs~vPD~apVR~KMLYAsTrATlkrefG~~~i~ee~~~T~~~dl~~~~~~k~l 135 (342)
T KOG1747|consen 77 ---NAEWLLISWVPDNAPVRQKMLYASTRATLKREFGGAYITEELFATDLEDLTLLGYFKSL 135 (342)
T ss_pred ---CccEEEEEECCCCChHHHHHHHHHHHHHHHHHhccceeccccccCCHHHhhhHHHHHhh
Confidence 2489999999999999999999999999999998 6789999999999998876554
No 10
>KOG3655|consensus
Probab=99.64 E-value=2.2e-15 Score=122.61 Aligned_cols=123 Identities=11% Similarity=0.074 Sum_probs=108.7
Q ss_pred HHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeeeCCCccccCeEEEEE
Q psy12965 11 DDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFIYI 90 (139)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w 90 (139)
.++.++|+++..+++ .+.|+||+++.....+.+..++ +..+++|.+.+....-.|++++..- .++.++|||||+|
T Consensus 11 aei~aaY~~v~~d~~-dt~WaiF~Yeg~s~~~~~~~s~-~~~~~e~~~df~~~kv~yg~~rv~D---~~s~l~KfvLI~W 85 (484)
T KOG3655|consen 11 AEIRAAYERVVDDSS-DTDWALFTYEGNSNDLKVAGSG-EGGLEEFLGDFDSGKVMYGFCRVKD---PMSGLPKFVLINW 85 (484)
T ss_pred HHHHHHHHHhhccCC-CceeEEEeecCCccceeeeccc-cccHHHHhhhcccCceeEEEEEecC---cccCCcceEEEEe
Confidence 568999999998765 7999999999876666665554 3489999999999999999999854 3566899999999
Q ss_pred eCCCCChhhHHHHHhhhHHHHhhcC-ceeEEEecCCCcCCHHHHHHhhc
Q psy12965 91 TPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEELTEEWLKSCLA 138 (139)
Q Consensus 91 ~Pd~a~vk~KMlYassk~~l~~~l~-i~~~~e~~d~~dl~~~~i~~kl~ 138 (139)
|++++++-.|-..|+.+..+++.|. ++.+|++++.+||+.+.|.++|+
T Consensus 86 ~GE~vp~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~ls 134 (484)
T KOG3655|consen 86 IGEGVPVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKLS 134 (484)
T ss_pred cCCccHHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHHH
Confidence 9999999999999999999999998 99999999999999999999986
No 11
>PRK11470 hypothetical protein; Provisional
Probab=46.64 E-value=67 Score=24.13 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=33.8
Q ss_pred CccEEEEEEeCCCcEEEEeeccCC---CChhHHHhcCCCCCCeEEEEeeee
Q psy12965 27 SNAALILKVDREKQRICIDDLMED---VSLDELRDILPSHQPRYVVYSCRM 74 (139)
Q Consensus 27 ~~~~vi~~I~~~~~~I~v~~~~~~---~~~~el~~~L~~~~pry~~~~~~~ 74 (139)
+|-.||+..+.+ +-++++...+. .++++|++. ....+|+++|+..
T Consensus 36 sHvGII~~~~~~-~~~VlEA~~~~vr~TpLs~fi~r--~~~g~i~v~Rl~~ 83 (200)
T PRK11470 36 NHVGIIIGHNGE-DFLVAESRVPLSTVTTLSRFIKR--SANQRYAIKRLDA 83 (200)
T ss_pred ceEEEEEEEcCC-ceEEEEecCCceEEeEHHHHHhc--CcCceEEEEEecC
Confidence 577888888764 57888876643 378999876 3378999999953
No 12
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.59 E-value=80 Score=20.84 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=37.8
Q ss_pred HHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeE
Q psy12965 12 DVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRY 67 (139)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry 67 (139)
++...+.+|..- +..|..+..||.+.+.+.+.=.|.+.+|+++.+.+.+-.|.-
T Consensus 23 e~A~~lskl~gV--egVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~I 76 (97)
T COG1888 23 ELALELSKLEGV--EGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAI 76 (97)
T ss_pred HHHHHHhhcCCc--ceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCee
Confidence 455566666532 258888888998877777766777889999887766554443
No 13
>COG1761 RPB11 DNA-directed RNA polymerase, subunit L [Transcription]
Probab=37.32 E-value=1.2e+02 Score=20.10 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=37.1
Q ss_pred CcEEEEeeccCCCChhHHH-hc-CCCCCCeEEEEeeeeeeCCCccccCeEEEEEeCCCCChhh
Q psy12965 39 KQRICIDDLMEDVSLDELR-DI-LPSHQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMAL 99 (139)
Q Consensus 39 ~~~I~v~~~~~~~~~~el~-~~-L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w~Pd~a~vk~ 99 (139)
.+.+++.=.|++=++-.++ .. +.+..+-|+-|+.+++..+ +..+.|-.+.+ +.++.
T Consensus 14 ~n~~~i~i~gEdHTL~NlL~~~L~~d~~V~~a~Y~i~HP~~~----~~~i~Ikt~~~-~dp~~ 71 (99)
T COG1761 14 DNSLELEIEGEDHTLGNLLREELLKDEDVEFAAYSIPHPLID----NPKIRIKTKGG-VDPKE 71 (99)
T ss_pred CCEEEEEEecCCchHHHHHHHHHhCCCCeeEEEEeCCCCCCC----CceEEEEECCC-CCHHH
Confidence 3456665555554665543 33 4577899999999887643 57788888888 55543
No 14
>COG1753 Predicted antotoxin, copG family [Signal transduction mechanisms]
Probab=37.08 E-value=39 Score=21.24 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=18.7
Q ss_pred CeeeeecCHHHHHHHHHhhccc
Q psy12965 3 PVKVCDIDDDVKEALKKFRFRK 24 (139)
Q Consensus 3 ~~~~i~is~~~~~~~~~l~~~~ 24 (139)
+++.|.|++|+-..+.+|+.++
T Consensus 2 ~~kTItI~ddvYe~L~kmK~g~ 23 (74)
T COG1753 2 PTKTITISDDVYEKLVKMKRGK 23 (74)
T ss_pred CcceeeecHHHHHHHHHHHccc
Confidence 4689999999999999999543
No 15
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=37.05 E-value=58 Score=21.59 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCe
Q psy12965 12 DVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPR 66 (139)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pr 66 (139)
++..++.++.--. ..+..+..+|.+.+.+.+.=.|.+.+|+++.+.+.+-.+.
T Consensus 21 e~A~~l~~~~gV~--gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~ 73 (95)
T PF02680_consen 21 ELAKALSELEGVD--GVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGV 73 (95)
T ss_dssp HHHHHHHTSTTEE--EEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-E
T ss_pred HHHHHHHhCCCcc--eEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCe
Confidence 3445555555322 5777888899988888877778788999987766554443
No 16
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=34.52 E-value=43 Score=21.33 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=24.2
Q ss_pred EEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEE
Q psy12965 33 LKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVY 70 (139)
Q Consensus 33 ~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~ 70 (139)
|.+....-.|++++-|..++ +|+...||++. .|++.
T Consensus 34 l~l~~~~~~l~L~eDGTeVt-EeyF~tLp~nT-~lmvL 69 (77)
T cd06535 34 LQLPCAGSRLCLYEDGTEVT-EEYFPTLPDNT-ELVLL 69 (77)
T ss_pred hCCCCCCcEEEEecCCcEeh-HHHHhcCCCCc-EEEEE
Confidence 34443345788888777777 89999999854 44443
No 17
>KOG4037|consensus
Probab=30.71 E-value=1.5e+02 Score=22.10 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=27.6
Q ss_pred ccEEEEEE-eCCCcEEEEeeccCCCC-hhHH---HhcCCCCCCeEEEEeee
Q psy12965 28 NAALILKV-DREKQRICIDDLMEDVS-LDEL---RDILPSHQPRYVVYSCR 73 (139)
Q Consensus 28 ~~~vi~~I-~~~~~~I~v~~~~~~~~-~~el---~~~L~~~~pry~~~~~~ 73 (139)
+.+.-|+| +.++++|-.+=..++.+ -+.| .+.|..+..||+=|.|.
T Consensus 86 IdFtrFkIRDldsg~VLFEIaKPp~eteE~l~a~ae~lspnagRyVRYqFt 136 (240)
T KOG4037|consen 86 IDFTRFKIRDLDSGTVLFEIAKPPVETEERLPANAEDLSPNAGRYVRYQFT 136 (240)
T ss_pred eeeEEEEEeeccCCcEEEEecCCCCcchhhcchhhhccCCcccceEEEeec
Confidence 55667777 34555665443223222 2223 46678889999999885
No 18
>PF02697 DUF217: Uncharacterized ACR, COG1753; InterPro: IPR003847 This entry is represented by Natrialba phage PhiCh1, Orf96. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.80 E-value=58 Score=20.26 Aligned_cols=19 Identities=42% Similarity=0.539 Sum_probs=16.6
Q ss_pred eeeeecCHHHHHHHHHhhc
Q psy12965 4 VKVCDIDDDVKEALKKFRF 22 (139)
Q Consensus 4 ~~~i~is~~~~~~~~~l~~ 22 (139)
++.|.|++++-+.|..++.
T Consensus 1 tKtIsIsdevY~rL~~~K~ 19 (71)
T PF02697_consen 1 TKTISISDEVYERLKKLKR 19 (71)
T ss_pred CceEEecHHHHHHHHHHhc
Confidence 4689999999999999983
No 19
>PF01900 RNase_P_Rpp14: Rpp14/Pop5 family; InterPro: IPR002759 This family contains proteins found in some eukaryotes and archaebacteria that are related to yeast ribonuclease P. This enzyme is essential for tRNA processing generating 5'-termini of mature tRNA molecules []. tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule associated with at least eight protein subunits, hPop1, Rpp14, Rpp20, Rpp25, Rpp29, Rpp30, Rpp38, and Rpp40 [].; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 2CZV_D 2AV5_B.
Probab=26.68 E-value=1e+02 Score=19.98 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=23.0
Q ss_pred eEEEEeeeeeeCCCccccCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcC
Q psy12965 66 RYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEAD 115 (139)
Q Consensus 66 ry~~~~~~~~~~~g~~~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~ 115 (139)
||+++.+....+ . +..++..+.++.+=++++.+.+|
T Consensus 1 RYi~~~i~~~~~--~------------~~~~~~~~~l~~~I~~a~~~l~G 36 (107)
T PF01900_consen 1 RYIVFEIISEDP--S------------DPAELSPSDLKKAIREAVKELFG 36 (107)
T ss_dssp EEEEEEEEES-------------------S---HHHHHHHHHHHHHHHCH
T ss_pred CEEEEEEEEccc--c------------ccCcCCHHHHHHHHHHHHHHHcC
Confidence 788877765321 1 34667888999999999999887
No 20
>COG0432 Uncharacterized conserved protein [Function unknown]
Probab=25.92 E-value=2.4e+02 Score=19.91 Aligned_cols=58 Identities=12% Similarity=0.280 Sum_probs=34.4
Q ss_pred eeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCC--ChhHHHhcCCCCCCe
Q psy12965 5 KVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDV--SLDELRDILPSHQPR 66 (139)
Q Consensus 5 ~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~--~~~el~~~L~~~~pr 66 (139)
-++.|++++.+...+...+. .=.++|. .-.+-.|.+-+..++. ++..+.+.|-.....
T Consensus 17 ~~vdIT~ev~~~v~esgv~~---Gl~~vf~-~HtTaal~inE~ep~l~~Di~~~l~~lvP~~~~ 76 (137)
T COG0432 17 EFVDITDEVEKFVRESGVKN---GLLLVFV-PHTTAALTINEAEPGLKEDIERFLEKLVPEGAG 76 (137)
T ss_pred ceEEchHHHHHHHHHcCCcc---ceEEEEe-cCcceEEEEecCCCcHHHHHHHHHHHhCCCCCC
Confidence 57889999999999887432 2333333 3334567776543333 566666655433444
No 21
>PRK11347 antitoxin ChpS; Provisional
Probab=23.36 E-value=2.1e+02 Score=18.21 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=32.9
Q ss_pred eeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCC
Q psy12965 5 KVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQ 64 (139)
Q Consensus 5 ~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~ 64 (139)
.++.|+.++.+.++ +.. ..-+-+.+.. +.|++.......+++||++....+.
T Consensus 12 ~~vriPk~il~~l~-l~~-----G~~v~i~v~~--~~iii~p~~~~~tL~eLla~~~~~~ 63 (83)
T PRK11347 12 AGMVIPNIVMKELN-LQP-----GQSVEAQVSN--NQLILTPISRRYSLDELLAQCDMNA 63 (83)
T ss_pred eeEEeCHHHHHHcC-CCC-----CCEEEEEEEC--CEEEEEECCCCCCHHHHHhcCCccc
Confidence 67788877776654 332 2235555554 4687766544458999998877654
No 22
>KOG0444|consensus
Probab=23.25 E-value=1.7e+02 Score=26.71 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=38.3
Q ss_pred CCeEEEEeeeeeeCCCccccCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcC
Q psy12965 64 QPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEAD 115 (139)
Q Consensus 64 ~pry~~~~~~~~~~~g~~~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~ 115 (139)
.-||+|...... +.| .-.|-..||+.+.|..-.+|--|-..-.|++.||
T Consensus 527 aDcYiVLKT~~d-dsG--~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~Lg 575 (1255)
T KOG0444|consen 527 ADCYIVLKTTRD-DSG--QLRWEIFYWIGEEATLDKGACSAIHAVNLRNHLG 575 (1255)
T ss_pred ccEEEEEEeecc-ccc--ccceeEEEEecccccccchhhhHHHhhhhhhhhC
Confidence 578999876432 223 3468888999999999999988888888888877
No 23
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=23.03 E-value=98 Score=19.50 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=17.2
Q ss_pred ChhHHHhcCCCCCCeEEEEee
Q psy12965 52 SLDELRDILPSHQPRYVVYSC 72 (139)
Q Consensus 52 ~~~el~~~L~~~~pry~~~~~ 72 (139)
+++||.+---.+.|.|+.|+=
T Consensus 5 TLEELs~ynG~nGpaYiA~~G 25 (81)
T COG4892 5 TLEELSKYNGENGPAYIAVNG 25 (81)
T ss_pred cHHHHHhhcCCCCCeEEEECC
Confidence 688888777788999998764
No 24
>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional
Probab=22.53 E-value=2.3e+02 Score=18.81 Aligned_cols=21 Identities=10% Similarity=-0.067 Sum_probs=17.7
Q ss_pred CCeeeeecCHHHHHHHHHhhc
Q psy12965 2 QPVKVCDIDDDVKEALKKFRF 22 (139)
Q Consensus 2 ~~~~~i~is~~~~~~~~~l~~ 22 (139)
|++-.|.|++.+.+.++++..
T Consensus 5 ~~~~~i~iT~~A~~~i~~~~~ 25 (115)
T PRK13623 5 DVPLPLVFTDAAAAKVKELIE 25 (115)
T ss_pred ccCcceEECHHHHHHHHHHHh
Confidence 556779999999999998864
No 25
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=22.23 E-value=2.1e+02 Score=18.38 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=16.7
Q ss_pred eeeeecCHHHHHHHHHhhcc
Q psy12965 4 VKVCDIDDDVKEALKKFRFR 23 (139)
Q Consensus 4 ~~~i~is~~~~~~~~~l~~~ 23 (139)
+.+|.+++.+.+.++++...
T Consensus 1 ~~~i~lT~~A~~~i~~ll~~ 20 (92)
T TIGR01911 1 MKIVAMSDDAYEEFKDFLKE 20 (92)
T ss_pred CCceEECHHHHHHHHHHHHh
Confidence 35789999999999998643
No 26
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=21.93 E-value=95 Score=19.79 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=23.4
Q ss_pred EEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCe
Q psy12965 33 LKVDREKQRICIDDLMEDVSLDELRDILPSHQPR 66 (139)
Q Consensus 33 ~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pr 66 (139)
|.+....-+|++++-|..++=+|+-..||++..-
T Consensus 34 l~~~~~~~~lvL~eDGT~Vd~EeyF~~LpdnT~l 67 (78)
T cd06539 34 LVITSGLVTLVLEEDGTVVDTEEFFQTLGDNTHF 67 (78)
T ss_pred hCCCCCCcEEEEeCCCCEEccHHHHhhCCCCCEE
Confidence 3443334578888777666778898999986543
No 27
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=20.33 E-value=1.4e+02 Score=21.14 Aligned_cols=26 Identities=8% Similarity=0.138 Sum_probs=18.6
Q ss_pred eEE-EEeeeeeeCCCccccCeEEEEEeCCCCChh
Q psy12965 66 RYV-VYSCRMEHGDGRVSYPMSFIYITPRDAQMA 98 (139)
Q Consensus 66 ry~-~~~~~~~~~~g~~~~k~vfI~w~Pd~a~vk 98 (139)
||= +|||.. .+|+|++.|+-|....|
T Consensus 80 ryRLFFRy~s-------~skiIv~aWvNDe~tlR 106 (140)
T PF11663_consen 80 RYRLFFRYDS-------ESKIIVYAWVNDEQTLR 106 (140)
T ss_pred eeeEEEEecC-------ccCEEEEEEeCCCcchh
Confidence 664 456542 36999999999986655
No 28
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=20.28 E-value=38 Score=23.22 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=10.3
Q ss_pred hhHH---HhcCC-CCCCeEEEEee
Q psy12965 53 LDEL---RDILP-SHQPRYVVYSC 72 (139)
Q Consensus 53 ~~el---~~~L~-~~~pry~~~~~ 72 (139)
|++| ++.+. .+++-|++|--
T Consensus 5 y~~~~~~~~~~~~~~~~~fl~F~g 28 (119)
T PF06110_consen 5 YDEFEKLVEEYENSGKPLFLLFTG 28 (119)
T ss_dssp HHHHHHHHHC--TTTSEEEEEEE-
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEc
Confidence 5554 44433 34788888753
Done!