Query psy12965
Match_columns 139
No_of_seqs 117 out of 897
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 15:39:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vkk_A GMF-gamma, GLIA maturat 100.0 2.5E-43 8.7E-48 252.7 16.4 138 2-139 15-152 (154)
2 1v6f_A MGMF-beta, GLIA maturat 100.0 1.2E-42 4.2E-47 248.4 16.8 136 3-138 10-145 (151)
3 1cfy_A Cofilin; actin-binding, 100.0 5.9E-41 2E-45 237.3 15.7 134 4-139 3-138 (143)
4 1cnu_A Actophorin, ADF, cofili 100.0 7.4E-41 2.5E-45 235.2 16.1 132 5-139 1-134 (137)
5 2i2q_A Cofilin; N-terminal ser 100.0 5.9E-41 2E-45 235.8 14.3 133 4-139 3-136 (137)
6 1f7s_A Actin depolymerizing fa 100.0 9.2E-41 3.1E-45 235.5 14.9 134 3-138 4-139 (139)
7 2kvk_A Actin severing and dyna 100.0 1.8E-40 6.3E-45 235.4 15.8 132 3-138 2-134 (144)
8 1tvj_A Cofilin; ADF, actin bin 100.0 5.8E-40 2E-44 237.8 16.0 134 5-139 3-155 (166)
9 2xfa_A Actin depolymerization 100.0 3.9E-40 1.3E-44 234.4 12.8 130 5-138 8-145 (148)
10 2w0i_A Twinfilin-2; cytoskelet 100.0 1.3E-39 4.4E-44 228.7 14.6 126 7-137 2-134 (135)
11 2lj8_A Cofilin/actin depolymer 100.0 3.3E-39 1.1E-43 229.0 15.0 130 4-138 11-141 (144)
12 2kd5_A ADF H, actin severing a 100.0 4.6E-39 1.6E-43 228.1 14.0 130 4-138 3-134 (144)
13 2d8b_A Twinfilin-1; cell-free 100.0 1E-38 3.5E-43 231.3 14.2 132 2-138 20-160 (166)
14 1ak6_A Destrin; actin depolyme 100.0 7.9E-40 2.7E-44 238.7 7.2 134 5-139 12-163 (174)
15 3daw_B Twinfilin-1, protein A6 100.0 8.8E-38 3E-42 226.0 16.2 129 5-138 20-155 (164)
16 1hqz_1 ABP1P, actin-binding pr 100.0 4E-37 1.4E-41 217.2 14.7 126 8-139 10-137 (141)
17 1m4j_A A6 gene product, twinfi 100.0 1.5E-37 5E-42 219.8 12.4 126 5-138 5-139 (142)
18 2vac_A Twinfilin-2; transferas 100.0 3.1E-37 1E-41 216.3 12.6 123 5-135 2-133 (134)
19 3q2b_A Pfadf1, cofilin/actin-d 100.0 5.8E-37 2E-41 212.5 6.7 113 5-130 5-122 (124)
20 1x67_A Drebrin-like protein; c 100.0 2E-35 6.9E-40 209.9 14.2 124 11-139 17-141 (146)
21 2l72_A Tgadf, actin depolymeri 100.0 1.2E-35 4.1E-40 209.6 11.4 113 5-131 24-138 (139)
22 1t3y_A Coactosin-like protein; 100.0 3.8E-33 1.3E-37 197.2 13.4 123 10-138 6-129 (141)
23 2raq_A Conserved protein MTH88 48.8 41 0.0014 21.4 5.0 57 12-70 23-79 (97)
24 1t44_G Chimera of gelsolin dom 45.1 58 0.002 22.1 5.7 83 16-115 7-89 (147)
25 2x3d_A SSO6206; unknown functi 37.4 45 0.0015 21.2 3.8 57 12-70 22-78 (96)
26 3bpd_A Uncharacterized protein 36.4 26 0.00088 22.5 2.5 58 12-71 23-80 (100)
27 3vbh_A EV71, genome polyprotei 36.3 49 0.0017 25.3 4.6 45 53-99 116-164 (297)
28 1ncq_A Coat protein VP1; HRV, 34.0 55 0.0019 24.8 4.6 35 65-99 119-161 (289)
29 1vs0_A Putative DNA ligase-lik 32.6 66 0.0023 24.2 4.9 37 39-76 80-116 (310)
30 2vik_A Villin 14T; actin-bindi 30.5 94 0.0032 20.4 4.8 75 27-115 15-89 (126)
31 1z7s_1 Human coxsackievirus A2 28.7 78 0.0027 24.1 4.6 35 65-99 120-163 (298)
32 1fmd_1 Foot-and-mouth disease 27.4 47 0.0016 24.1 3.0 30 64-99 68-97 (208)
33 1tme_1 Theiler'S murine enceph 26.9 68 0.0023 24.2 3.9 34 65-98 120-153 (274)
34 2mev_1 Mengo virus coat protei 25.0 67 0.0023 24.3 3.6 34 65-98 120-153 (277)
35 2ygw_A Malonyl-COA decarboxyla 24.6 47 0.0016 27.0 2.8 34 52-91 193-226 (460)
36 1aym_1 HRV16, human rhinovirus 23.7 1.1E+02 0.0039 23.1 4.7 15 85-99 139-153 (285)
37 1vmf_A Hypothetical protein; s 23.1 95 0.0033 21.1 3.8 59 3-65 23-85 (145)
38 1bev_1 Bovine enterovirus coat 23.0 1.1E+02 0.0037 23.1 4.4 35 65-99 112-154 (281)
39 3tu5_B Gelsolin, protein cordo 22.5 1.8E+02 0.0063 21.9 5.7 84 29-125 34-121 (297)
40 3gqq_A Protein UNC-119 homolog 21.9 1.7E+02 0.0058 20.9 4.9 48 27-74 40-90 (195)
41 3cip_G Gelsolin; actin, dictyo 20.8 1.8E+02 0.0063 18.9 7.4 83 16-115 10-92 (128)
42 1d4m_1 Protein (coxsackievirus 20.3 1.4E+02 0.0049 22.7 4.6 15 85-99 141-155 (299)
43 1vmj_A Hypothetical protein TM 20.3 1E+02 0.0034 21.1 3.4 59 3-65 27-88 (151)
No 1
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A
Probab=100.00 E-value=2.5e-43 Score=252.74 Aligned_cols=138 Identities=48% Similarity=0.860 Sum_probs=127.1
Q ss_pred CCeeeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeeeCCCcc
Q psy12965 2 QPVKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDGRV 81 (139)
Q Consensus 2 ~~~~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~ 81 (139)
+..++++++++|+++|++|+.++++.++||+|+|+.++++|+|++.+++.++++|.+.||+++|||++|||++++.+|+.
T Consensus 15 ~~~~~~~v~~e~~~a~~~lk~~k~~~~~~iifkId~~~~~I~v~~~~~~~~~~e~~~~Lp~~~pRY~vy~~~~~~~~g~~ 94 (154)
T 1vkk_A 15 DSLVVCEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISPEELKLELPERQPRFVVYSYKYVHDDGRV 94 (154)
T ss_dssp ---CCCEECHHHHHHHHHHHTCCCCSCEEEEEEEETTTTEEEEEEEEESCCHHHHHHHSCSSSCEEEEEECCEECTTSCE
T ss_pred ccccceeeCHHHHHHHHHHHhcccCCccEEEEEEcCCCCEEEEEEcCCCCCHHHHHHhCCCCCcEEEEEEeeeccCCCcc
Confidence 34578999999999999999876446999999999988999999866567999999999999999999999999999988
Q ss_pred ccCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcCceeEEEecCCCcCCHHHHHHhhcC
Q psy12965 82 SYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVYEVRELEELTEEWLKSCLAG 139 (139)
Q Consensus 82 ~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~i~~~~e~~d~~dl~~~~i~~kl~~ 139 (139)
++|++||+|||++|++|.||+|||+|++|++.||+++++|++|++||++++|.++|+.
T Consensus 95 ~~klvFI~w~P~~a~vk~KMlYAssk~~l~~~lgi~~~iea~d~~El~~e~i~~kl~k 152 (154)
T 1vkk_A 95 SYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTDDLTETWLKEKLAF 152 (154)
T ss_dssp ECCEEEEEECCTTSCHHHHHHHHHHHHHHHHHTTCCCEEEESSGGGCCHHHHHHHHHT
T ss_pred cccEEEEEECCCCCChhhhhhhHhhHHHHHHhhCceEEEEECChHhCCHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999863
No 2
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Probab=100.00 E-value=1.2e-42 Score=248.36 Aligned_cols=136 Identities=49% Similarity=0.906 Sum_probs=127.3
Q ss_pred CeeeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeeeCCCccc
Q psy12965 3 PVKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDGRVS 82 (139)
Q Consensus 3 ~~~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~ 82 (139)
+...++++++|+++|++|+.+++..++||+|+|+.++++|+|++.+++.++++|.+.||+++|||++||+++++.+|+.+
T Consensus 10 ~~~~~~v~~e~~~a~~~lr~~k~~~~~~iifki~~~~~~I~v~~~~~~~~~~el~~~Lp~~~prY~~~~~~~~~~~~~~~ 89 (151)
T 1v6f_A 10 SLVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELEGVSPDELKDELPERQPRFIVYSYKYQHDDGRVS 89 (151)
T ss_dssp CCCCCEECHHHHHHHHHHHTCCCSSCEEEEEEECSSSCEEEEEEEEESCCHHHHGGGSCSSSCEEEEEECCEECTTSCEE
T ss_pred CceEEEECHHHHHHHHHHHhccCCCccEEEEEEcCCCcEEEEEecCCCCCHHHHHhhCCCCCceEEEEecccccCCCccc
Confidence 45789999999999999998764358999999999888999998766668999999999999999999999999998889
Q ss_pred cCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcCceeEEEecCCCcCCHHHHHHhhc
Q psy12965 83 YPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVYEVRELEELTEEWLKSCLA 138 (139)
Q Consensus 83 ~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~i~~~~e~~d~~dl~~~~i~~kl~ 138 (139)
+|++||+|||++|++|.||+|||+|++|++.+|+++++|++|++||++++|.++|+
T Consensus 90 ~k~vfI~w~P~~a~vk~KMlYAssk~~l~~~lgi~~~iea~d~~El~~~~i~~kl~ 145 (151)
T 1v6f_A 90 YPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLG 145 (151)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHHHHHTTCSEEEEESSGGGCCHHHHHHHHH
T ss_pred ccEEEEEECCCCCChHHheehHHHHHHHHHHhCCeEEEEECChHHCCHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999986
No 3
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A
Probab=100.00 E-value=5.9e-41 Score=237.32 Aligned_cols=134 Identities=16% Similarity=0.291 Sum_probs=123.5
Q ss_pred eeeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeeeCCC-ccc
Q psy12965 4 VKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDG-RVS 82 (139)
Q Consensus 4 ~~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g-~~~ 82 (139)
.++|.++++|+++|++|+.++ .++||+|+|+.++++|+|++.+++.++++|.+.||+++|||++||+++++.+| +.+
T Consensus 3 ~sGi~v~~e~~~a~~~~~~~~--~~~~ii~~i~~~~~~i~v~~~g~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~~~ 80 (143)
T 1cfy_A 3 RSGVAVADESLTAFNDLKLGK--KYKFILFGLNDAKTEIVVKETSTDPSYDAFLEKLPENDCLYAIYDFEYEINGNEGKR 80 (143)
T ss_dssp ---CEECHHHHHHHHHHHHHC--CCSEEEEEECTTSSEEEEEEEECCCCHHHHHTTSCTTCCEEEEEEEEEECSSSCCEE
T ss_pred cCCcEeCHHHHHHHHHHHCCC--CeeEEEEEEcCCCCEEEEEecCCCCCHHHHHHhCCCCCcEEEEEEeeeecCCCcccc
Confidence 467899999999999999875 69999999998889999998876568999999999999999999999999888 889
Q ss_pred cCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcC-ceeEEEecCCCcCCHHHHHHhhcC
Q psy12965 83 YPMSFIYITPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEELTEEWLKSCLAG 139 (139)
Q Consensus 83 ~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~-i~~~~e~~d~~dl~~~~i~~kl~~ 139 (139)
+|++||+|||++|++|.||+|||++++|++.|+ ++.+++++|++||+++.|.++|++
T Consensus 81 ~k~vfI~w~Pd~a~v~~KmlyAssk~~l~~~l~g~~~~i~a~d~~el~~~~i~~kl~~ 138 (143)
T 1cfy_A 81 SKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERVSR 138 (143)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCTTCCEEEEESSGGGGSHHHHHHHHHC
T ss_pred cCEEEEEECCCCCChhheeehHhhHHHHHHhcCCceEEEEeCChHHCCHHHHHHHHhh
Confidence 999999999999999999999999999999996 999999999999999999999863
No 4
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A
Probab=100.00 E-value=7.4e-41 Score=235.16 Aligned_cols=132 Identities=14% Similarity=0.351 Sum_probs=122.8
Q ss_pred eeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccC-CCChhHHHhcCCCCCCeEEEEeeeeeeCCCcccc
Q psy12965 5 KVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLME-DVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSY 83 (139)
Q Consensus 5 ~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~-~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~ 83 (139)
++|+++++|.++|++|+.++ .++|++|+|+.++++|++++.++ +.++++|.+.||+++|||++||+++++.+| .++
T Consensus 1 SGi~v~~e~~~a~~~~~~~~--~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~-~~~ 77 (137)
T 1cnu_A 1 SGIAVSDDCVQKFNELKLGH--QHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQVDGG-QRN 77 (137)
T ss_dssp -CCEECHHHHHHHHHHHHHC--CCSEEEEEECTTSSEEEEEEECCTTCCHHHHHTTSCTTSCEEEEEEEEEEETTE-EEE
T ss_pred CCCccCHHHHHHHHHHHcCC--CccEEEEEEcCCCCEEEEEeccCCCCCHHHHHHhCCCCCceEEEEEeeeecCCC-Ccc
Confidence 36899999999999999875 69999999999889999998874 468999999999999999999999999887 789
Q ss_pred CeEEEEEeCCCCChhhHHHHHhhhHHHHhhcC-ceeEEEecCCCcCCHHHHHHhhcC
Q psy12965 84 PMSFIYITPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEELTEEWLKSCLAG 139 (139)
Q Consensus 84 k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~-i~~~~e~~d~~dl~~~~i~~kl~~ 139 (139)
+++||+|||++|++|.||+|||+|++|++.|+ ++++++++|++||+++.+.++|++
T Consensus 78 k~vfI~w~Pd~a~v~~Kmlyassk~~l~~~l~g~~~~i~a~~~~el~~~~i~~kl~~ 134 (137)
T 1cnu_A 78 KITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERAKK 134 (137)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHHHHHSTTCCEEEEECSTTTTSHHHHHHHHTC
T ss_pred CEEEEEECCCCCChHHheehHHhHHHHHHHhcCceEEEEECChHHCCHHHHHHHHhc
Confidence 99999999999999999999999999999996 999999999999999999999864
No 5
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.9e-41 Score=235.77 Aligned_cols=133 Identities=20% Similarity=0.356 Sum_probs=111.0
Q ss_pred eeeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeeeCCCcccc
Q psy12965 4 VKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSY 83 (139)
Q Consensus 4 ~~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~ 83 (139)
.++|+++++|.++|++|+.++ .++||+|+|+.++++|+|++...+.++++|.+.||+++|||++||+++++.+| .++
T Consensus 3 ~sGi~v~~e~~~a~~~~~~~~--~~~~ii~~i~~~~~~i~v~~~~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~-~~~ 79 (137)
T 2i2q_A 3 FSGVKVSPECLEAFQELKLGK--SLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEKDCRYAIYDFEFNLGEG-VRN 79 (137)
T ss_dssp CSCCEECHHHHHHHHHHHHTC--CCSEEEEEECTTSSEEEEEEEECCCCHHHHHHTSCSSSCEEEEEEEEECSSSS-CEE
T ss_pred CCCcccCHHHHHHHHHHHCCC--CceEEEEEECCCCcEEEEecCCCCCCHHHHHHhCCCcCceEEEEEeeeecCCC-Ccc
Confidence 367899999999999999865 69999999998889999987333568999999999999999999999998887 789
Q ss_pred CeEEEEEeCCCCChhhHHHHHhhhHHHHhhcC-ceeEEEecCCCcCCHHHHHHhhcC
Q psy12965 84 PMSFIYITPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEELTEEWLKSCLAG 139 (139)
Q Consensus 84 k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~-i~~~~e~~d~~dl~~~~i~~kl~~ 139 (139)
+++||+|||++|++|.||+|||||++|++.|+ ++++++++|++||+++.+.++|..
T Consensus 80 k~vfI~w~Pd~a~vk~KMlyassk~~l~~~l~g~~~~i~a~d~~el~~~~i~~kl~~ 136 (137)
T 2i2q_A 80 KIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEKVTR 136 (137)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHHHTTCCCCCEEEEECCCC-------------
T ss_pred CEEEEEECCCCCChhHhhhhHHHHHHHHHHhcCceEEEEECChHHcCHHHHHHHhcC
Confidence 99999999999999999999999999999996 999999999999999999999863
No 6
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2
Probab=100.00 E-value=9.2e-41 Score=235.47 Aligned_cols=134 Identities=16% Similarity=0.336 Sum_probs=114.7
Q ss_pred CeeeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCC-CChhHHHhcCCCCCCeEEEEeeeeeeCCCcc
Q psy12965 3 PVKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMED-VSLDELRDILPSHQPRYVVYSCRMEHGDGRV 81 (139)
Q Consensus 3 ~~~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~-~~~~el~~~L~~~~pry~~~~~~~~~~~g~~ 81 (139)
..++|.++++|+++|++|+.++ .+||++|+|+.++++|+|++.+++ .+|++|.+.||+++|||++||+++++.+|+.
T Consensus 4 ~~sGi~v~~e~~~af~~~~~~~--~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~ 81 (139)
T 1f7s_A 4 AASGMAVHDDCKLRFLELKAKR--THRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQ 81 (139)
T ss_dssp -CCCCEECHHHHHHHHHHHHHC--CCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCTTSCEEEEEEEEEECTTSCE
T ss_pred CccCcEeCHHHHHHHHHHHcCC--CcEEEEEEECCCCcEEEEEeecCCCCCHHHHHHhCCCCCceEEEEEeeeeccccCc
Confidence 3578999999999999999854 699999999998889999988764 3899999999999999999999999999999
Q ss_pred ccCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcC-ceeEEEecCCCcCCHHHHHHhhc
Q psy12965 82 SYPMSFIYITPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEELTEEWLKSCLA 138 (139)
Q Consensus 82 ~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~-i~~~~e~~d~~dl~~~~i~~kl~ 138 (139)
++|++||+|||++|++|.||+|||+|++|++.|+ ++.+++++|++||+++.|.+++.
T Consensus 82 ~~k~vfI~w~P~~a~v~~KmlyAssk~~l~~~l~g~~v~i~a~d~~el~~~~i~~~~~ 139 (139)
T 1f7s_A 82 KSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139 (139)
T ss_dssp EEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCCEEEEECCTTC-----------
T ss_pred ccCEEEEEECCCCCChhHheehHHhHHHHHHhcCCeEEEEEECChHHCCHHHHHHhhC
Confidence 9999999999999999999999999999999998 88899999999999999998863
No 7
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani}
Probab=100.00 E-value=1.8e-40 Score=235.41 Aligned_cols=132 Identities=14% Similarity=0.298 Sum_probs=121.3
Q ss_pred CeeeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccC-CCChhHHHhcCCCCCCeEEEEeeeeeeCCCcc
Q psy12965 3 PVKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLME-DVSLDELRDILPSHQPRYVVYSCRMEHGDGRV 81 (139)
Q Consensus 3 ~~~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~-~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~ 81 (139)
++++|.++++|+++|++|+.+ ++||++|+|+.++++|+|+..++ +.+|++|.+.||+++|||++||+++.+.+ +.
T Consensus 2 a~SGv~v~de~~~af~~lk~~---k~~~vi~~I~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~prY~~y~~~~~~~~-~~ 77 (144)
T 2kvk_A 2 AISGVTLEESVRGAIDDLRMK---KSRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDAG-SK 77 (144)
T ss_dssp CCCCCEECHHHHHHHHHHHTT---SSSEEEEEECTTSCEEEEEEEECTTCCHHHHHHTCCTTSCCEEEEEEEEEETT-EE
T ss_pred CcCCcccCHHHHHHHHHHhcC---CceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhCCccCceEEEEEeeeccCC-CC
Confidence 467899999999999999975 48999999999999999988775 45899999999999999999999997754 46
Q ss_pred ccCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcCceeEEEecCCCcCCHHHHHHhhc
Q psy12965 82 SYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVYEVRELEELTEEWLKSCLA 138 (139)
Q Consensus 82 ~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~i~~~~e~~d~~dl~~~~i~~kl~ 138 (139)
++|++||+|||++||+|.||+|||||++|++.|+.++++|++|++||+++.|.+||+
T Consensus 78 ~~k~vfI~w~Pd~a~vk~KMlyassk~~lk~~l~~~~~i~a~d~~el~~e~i~~kl~ 134 (144)
T 2kvk_A 78 REKLILIQWIPDTARPREKMMYSASRDALSSVSEGYLPIQANDESGLDAEEIIRKVR 134 (144)
T ss_dssp EEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCTTEEEEEESSGGGGCHHHHHHHHH
T ss_pred cccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHCCHHHHHHHHh
Confidence 789999999999999999999999999999999977899999999999999999985
No 8
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus}
Probab=100.00 E-value=5.8e-40 Score=237.84 Aligned_cols=134 Identities=19% Similarity=0.448 Sum_probs=122.1
Q ss_pred eeeecCHHHHHHHHHhhcccC-------CCccEEEEEEeCCCcEEEEee--------ccC--CCChhHHHhcCCCCCCeE
Q psy12965 5 KVCDIDDDVKEALKKFRFRKA-------QSNAALILKVDREKQRICIDD--------LME--DVSLDELRDILPSHQPRY 67 (139)
Q Consensus 5 ~~i~is~~~~~~~~~l~~~~~-------~~~~~vi~~I~~~~~~I~v~~--------~~~--~~~~~el~~~L~~~~pry 67 (139)
++|.++++|+++|++|+.+++ +.++|++|+|+.++..|++++ .+. +.+|++|++.||+++|||
T Consensus 3 SGi~vs~e~~~~f~~~k~~k~~~~~~~~~~~~~iifki~~~~~~iivee~~~~~~~~~~~~~~~~~~ef~~~L~~~~prY 82 (166)
T 1tvj_A 3 SGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIGDTVEDPYTAFVKLLPLNDCRY 82 (166)
T ss_dssp CCCEECHHHHHHHHHHHSCCCSCHHHHTTCEEEEEEEECTTSSEEEEEEEEEEETTTBTTTBSCHHHHHHHHCCTTSCEE
T ss_pred CCCeeCHHHHHHHHHHhcCCCccccccccceeEEEEEECCCCcEEEEeccccccccccCccccCCHHHHHHhCCCCCcEE
Confidence 578999999999999998753 258999999999888999986 332 357999999999999999
Q ss_pred EEEeeeeeeCCCccccCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcC-ceeEEEecCCCcC-CHHHHHHhhcC
Q psy12965 68 VVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEEL-TEEWLKSCLAG 139 (139)
Q Consensus 68 ~~~~~~~~~~~g~~~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~-i~~~~e~~d~~dl-~~~~i~~kl~~ 139 (139)
++||+++.+.+| .+++|+||+|||++|++|.||+|||||++|++.|+ ++++++++|++|| ++++|.++|++
T Consensus 83 ~vy~~~~~~~~~-~~~klvfI~W~Pd~a~vr~KMlYAssk~~lk~~l~gi~~~i~atd~~el~~~~~i~ekl~~ 155 (166)
T 1tvj_A 83 ALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGG 155 (166)
T ss_dssp EEEEEEEEESSC-EEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCCEEEESSGGGTCCHHHHHHHHTC
T ss_pred EEEeccccCCCC-CccCEEEEEECCCCCCHHHhhHHHHhHHHHHHHhcCCeEEEEECChHHcCCHHHHHHHhCC
Confidence 999999988886 78999999999999999999999999999999996 9999999999999 99999999974
No 9
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=3.9e-40 Score=234.44 Aligned_cols=130 Identities=16% Similarity=0.310 Sum_probs=119.3
Q ss_pred eeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEe------eccC-CCChhHHHhcCCCCCCeEEEEeeeeeeC
Q psy12965 5 KVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICID------DLME-DVSLDELRDILPSHQPRYVVYSCRMEHG 77 (139)
Q Consensus 5 ~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~------~~~~-~~~~~el~~~L~~~~pry~~~~~~~~~~ 77 (139)
++|.++++|+++|++|+.++ .+||++|+| .++++|+++ ..++ +.+|++|.+.||+++|||++||+++++.
T Consensus 8 sGi~v~~e~~~af~~~k~~k--~~~~ii~~i-~~~~~i~v~~~~~~~~~g~~~~~~~~~~~~L~~~~prY~~y~~~~~~~ 84 (148)
T 2xfa_A 8 SGVNVSDECIYEFNRLKVKH--LNKYIIYKI-ENLEKIVVDVLEHDMELTSLDNIIMRIKNNLKNTECRYIIADMPIPTP 84 (148)
T ss_dssp CCCEECHHHHHHHHHHHTSC--CCSEEEEEE-ETTTEEEEEEEECCTTCCCHHHHHHHHHHTCBTTBCEEEEEEEEECCS
T ss_pred CCCeeCHHHHHHHHHHHCCC--ceEEEEEEE-CCCCEEEEEecccccccCCCCCCHHHHHHhCCcCCcEEEEEecccccC
Confidence 67899999999999999875 699999999 557899998 5453 2479999999999999999999999999
Q ss_pred CCccccCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcC-ceeEEEecCCCcCCHHHHHHhhc
Q psy12965 78 DGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEELTEEWLKSCLA 138 (139)
Q Consensus 78 ~g~~~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~-i~~~~e~~d~~dl~~~~i~~kl~ 138 (139)
+|+++++|+||+|||++|++|.||+|||||++|++.|+ ++++++++| +||+++.|.+++.
T Consensus 85 ~g~~~~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~i~atd-~el~~~~i~~k~~ 145 (148)
T 2xfa_A 85 EGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKINGIFKSLEITC-DINEFEEELKAII 145 (148)
T ss_dssp SCCCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCSEEEEECS-CGGGHHHHHHHHH
T ss_pred CCCcccCEEEEEECCCCCChHHHhHhHHHHHHHHHHhcCCeEEEEEEc-ccCCHHHHHHHhh
Confidence 99999999999999999999999999999999999995 999999999 9999999999873
No 10
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=228.69 Aligned_cols=126 Identities=19% Similarity=0.350 Sum_probs=116.7
Q ss_pred eecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeeeCCCccccCeE
Q psy12965 7 CDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMS 86 (139)
Q Consensus 7 i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k~v 86 (139)
|+|+++|+++|++|+.+ +++|++|+|+.++++|+|++++ +.++++|.+.||+++|||++||+++++.+| .++|++
T Consensus 2 ~~v~~e~~~a~~~lk~~---~~~~ii~~id~~~~~I~v~~~~-~~~~~el~~~Lp~~~~rY~~y~~~~~~~~~-~~~k~v 76 (135)
T 2w0i_A 2 MPLQPEAQRALQQLKQK---MVNYIQMKLDLERETIELVHTE-PTDVAQLPSRVPRDAARYHFFLYKHTHEGD-PLESVV 76 (135)
T ss_dssp CCBCHHHHHHHHHHHTT---SCSEEEEEEETTTTEEEEEECC-CCCGGGGGGGSCSSSCEEEEEEEEEEETTE-EEEEEE
T ss_pred cccCHHHHHHHHHHHcC---CCcEEEEEEeCCCCEEEEEecC-CCCHHHHHhhCCCCCcEEEEEecccccCCC-CCccEE
Confidence 68999999999999975 3999999999988999999876 669999999999999999999999988665 889999
Q ss_pred EEEEeCC-CCChhhHHHHHhhhHHHHhhc----C--ceeEEEecCCCcCCHHHHHHhh
Q psy12965 87 FIYITPR-DAQMALQIMYAGTKLALQQEA----D--LTRVYEVRELEELTEEWLKSCL 137 (139)
Q Consensus 87 fI~w~Pd-~a~vk~KMlYassk~~l~~~l----~--i~~~~e~~d~~dl~~~~i~~kl 137 (139)
||+|||+ +|++|.||+|||+|++|++.+ | +.+.+|++|++||+++.|.++|
T Consensus 77 fI~w~P~~~~~vk~kMlYassk~~l~~~l~~~~Gi~v~~~iea~d~~el~~~~i~~kl 134 (135)
T 2w0i_A 77 FIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIEIGDGAELTAEFLDDEV 134 (135)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCGGGCCHHHHHHHH
T ss_pred EEEECCCCCCCHHHHhHhHHhHHHHHHHHhhccCCceeEEEEcCChhhcCHHHHHHhh
Confidence 9999999 999999999999999999987 4 4499999999999999999987
No 11
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei}
Probab=100.00 E-value=3.3e-39 Score=228.96 Aligned_cols=130 Identities=15% Similarity=0.274 Sum_probs=115.3
Q ss_pred eeeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccC-CCChhHHHhcCCCCCCeEEEEeeeeeeCCCccc
Q psy12965 4 VKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLME-DVSLDELRDILPSHQPRYVVYSCRMEHGDGRVS 82 (139)
Q Consensus 4 ~~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~-~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~ 82 (139)
+++|.+++||+++|++|+.+ +++|++|+|+++. +++++..+. +.++++|.+.||+++|||++|++++.+.+| .+
T Consensus 11 ~SGi~vsde~~~af~~lk~~---k~~~ii~~i~d~~-~~vv~~~~~~~~~~de~~~~L~~~~prY~~y~~~~~~~~~-~~ 85 (144)
T 2lj8_A 11 MSGVSVADECVTALNDLRHK---KSRYVIMHIVDQK-SIAVKTIGERGANFDQFIEAIDKNVPCYAAFDFEYTTNDG-PR 85 (144)
T ss_dssp CSSCEECHHHHHHHHHHTTT---SSSEEEEEEETTT-EEEEEEECSSCCCHHHHHHHCCSSSCEEEEEEEEECSSSS-SE
T ss_pred cCCceeCHHHHHHHHHHhcC---CceEEEEEEECCc-EEEEEecCCCCCCHHHHHHhCcccCCcceeeeeeeccCCC-Cc
Confidence 46899999999999999965 4899999998764 555555543 558999999999999999999999988765 46
Q ss_pred cCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcCceeEEEecCCCcCCHHHHHHhhc
Q psy12965 83 YPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVYEVRELEELTEEWLKSCLA 138 (139)
Q Consensus 83 ~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~i~~~~e~~d~~dl~~~~i~~kl~ 138 (139)
++|+||+|||++||+|.||+|||||++|++.|+..+.+|++|++||+++.|.++|+
T Consensus 86 ~k~vfI~w~Pd~a~vk~KMlYASsk~~l~~~l~~~~~i~a~d~~el~~e~i~~kl~ 141 (144)
T 2lj8_A 86 DKLILISWNPDSGAPRTKMLYSSSRDALVPLTQGFQGIQANDASGLDFEEISRKVK 141 (144)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHTTTSEEEECCGGGTSCHHHHHHHHH
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCeeEEEeCChHHCCHHHHHHHHh
Confidence 79999999999999999999999999999999944689999999999999999986
No 12
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin, solution structure, hormone; NMR {Leishmania donovani} PDB: 2kvk_A
Probab=100.00 E-value=4.6e-39 Score=228.09 Aligned_cols=130 Identities=15% Similarity=0.326 Sum_probs=120.3
Q ss_pred eeeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccC-CCChhHHHhcCCCCCCeEEEEeeeeeeCCCccc
Q psy12965 4 VKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLME-DVSLDELRDILPSHQPRYVVYSCRMEHGDGRVS 82 (139)
Q Consensus 4 ~~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~-~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~ 82 (139)
+++|.++++|+++|++|+.++ ++|++|+|+.++++|+|+++|. +.++++|.+.||+++|||++||+++++.+ +++
T Consensus 3 ~SGi~vs~e~~~a~~~~~~~~---~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~-~~~ 78 (144)
T 2kd5_A 3 ISGVTLEESVRGAIDDLRMKK---SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDAG-SKR 78 (144)
T ss_dssp CCSCBCCHHHHHHHHHHTTTS---SSEEEEEECSSSCBEEEEEECCSCCCHHHHTTTTSCSSCEEEEEEEEEESSS-CEE
T ss_pred ccCCCcCHHHHHHHHHHHcCC---eeEEEEEECCCCCEEEEEeccCCCCCHHHHHHhCCccCcEEEEEEEEecCCC-CCc
Confidence 368999999999999999753 9999999998889999998664 46899999999999999999999998877 457
Q ss_pred cCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcC-ceeEEEecCCCcCCHHHHHHhhc
Q psy12965 83 YPMSFIYITPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEELTEEWLKSCLA 138 (139)
Q Consensus 83 ~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~-i~~~~e~~d~~dl~~~~i~~kl~ 138 (139)
+|++||+|||++|++|.||+|||+|++|++.|+ + ++++++|++||+++.|.++|.
T Consensus 79 ~k~vfI~w~Pd~a~vk~KMlyAssk~~l~~~l~g~-~~i~a~d~~el~~~~i~~kl~ 134 (144)
T 2kd5_A 79 EKLILIQWIPDTARPREKMMYSASRDALSSVSEGY-LPIQANDESGLDAEEIIRKVR 134 (144)
T ss_dssp EEEEEEEECCCCSCSHHHHHHHHHGGGGTTTTCCS-EEEEESSSSSSSHHHHHHHHH
T ss_pred cCEEEEEECCCCCCHHHHhhhHHHHHHHHHHhCCe-EEEEECChHHCCHHHHHHHHh
Confidence 999999999999999999999999999999997 9 999999999999999999875
No 13
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus}
Probab=100.00 E-value=1e-38 Score=231.32 Aligned_cols=132 Identities=21% Similarity=0.356 Sum_probs=120.5
Q ss_pred CCeeeee--cCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeeeCCC
Q psy12965 2 QPVKVCD--IDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDG 79 (139)
Q Consensus 2 ~~~~~i~--is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g 79 (139)
|.+.++. |+++|+++|++|+.+ .++||+|+|+.++++|+|++.+ +.++++|.+.||+++|||++|||++++.+|
T Consensus 20 ~~~sgv~~~v~~e~~~a~~~lk~~---~~~~vifkId~~~~~I~v~~~~-~~~~~el~~~Lp~~~pRY~~y~~~~~~~~~ 95 (166)
T 2d8b_A 20 QTLQGVAFPISRDAFQALEKLSKK---QLNYVQLEIDIKNETIILANTE-NTELRDLPKRIPKDSARYHFFLYKHSHEGD 95 (166)
T ss_dssp SCSCCCCCCBCHHHHHHHHHHHTT---CCSCCEEEEETTTTEEEEEECC-CCCSTTHHHHSCSSCCEEEEEEEEEEETTE
T ss_pred cccCCcccCcCHHHHHHHHHHHcC---CCcEEEEEEeCCCCEEEEEecC-CCCHHHHHHhCCCCCceEEEEeccccCCCC
Confidence 4455555 999999999999975 5999999999988999999876 568999999999999999999999998776
Q ss_pred ccccCeEEEEEeCC-CCChhhHHHHHhhhHHHHhhc----Cc--eeEEEecCCCcCCHHHHHHhhc
Q psy12965 80 RVSYPMSFIYITPR-DAQMALQIMYAGTKLALQQEA----DL--TRVYEVRELEELTEEWLKSCLA 138 (139)
Q Consensus 80 ~~~~k~vfI~w~Pd-~a~vk~KMlYassk~~l~~~l----~i--~~~~e~~d~~dl~~~~i~~kl~ 138 (139)
+++|++||+|||+ +|++|.||+|||+|+.|++.+ |+ ++++|++|++||+++.|.++|.
T Consensus 96 -~~~k~vFI~w~P~~~~~ik~KMlYAssk~~l~~~l~~~~Gi~v~~~iea~d~~El~~~~i~~kl~ 160 (166)
T 2d8b_A 96 -YLESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYDEVH 160 (166)
T ss_dssp -EEEEEEEEEECCCSSSCHHHHHHHHHTTHHHHHHHTTSSCCCCSEEEEESSSTTCCHHHHHHHHH
T ss_pred -ccccEEEEEECCCCCCCHHHeeehhhhHHHHHHHHhhccCCceeEEEEeCChHHCCHHHHHHHhC
Confidence 5899999999999 999999999999999999987 54 8999999999999999999875
No 14
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M
Probab=100.00 E-value=7.9e-40 Score=238.75 Aligned_cols=134 Identities=19% Similarity=0.346 Sum_probs=121.4
Q ss_pred eeeecCHHHHHHHHHhhcccC-------CCccEEEEEEeCCCcEEEEeec--------cC--CCChhHHHhcCCCCCCeE
Q psy12965 5 KVCDIDDDVKEALKKFRFRKA-------QSNAALILKVDREKQRICIDDL--------ME--DVSLDELRDILPSHQPRY 67 (139)
Q Consensus 5 ~~i~is~~~~~~~~~l~~~~~-------~~~~~vi~~I~~~~~~I~v~~~--------~~--~~~~~el~~~L~~~~pry 67 (139)
++|.++++|+++|++|+.+++ +.+||++|+|+.+++.|++++. +. +.+|++|++.||+++|||
T Consensus 12 SGi~vs~e~~~~f~~~k~~ks~~~~~~~~~~~~iifki~~~~~~Iivee~~~~~~~~~g~~~~~~~~ef~~~L~~~~prY 91 (174)
T 1ak6_A 12 SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRY 91 (174)
T ss_dssp TCCCCCSHHHHHHHHTSSSCCSSHHHHGGGCCCEECCCSTTSCSCCCCSSCCCCSSSTTTTCCSSSHHHHHTSCSSCCCC
T ss_pred CCCccCHHHHHHHHHHHcCCcccccccccceeEEEEEECCCCcEEEEeccccccccccCcccCCCHHHHHHhCCCCCcEE
Confidence 578999999999999998752 2689999999988788888863 22 358999999999999999
Q ss_pred EEEeeeeeeCCCccccCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcC-ceeEEEecCCCcCCHHHHHHhhcC
Q psy12965 68 VVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEELTEEWLKSCLAG 139 (139)
Q Consensus 68 ~~~~~~~~~~~g~~~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~-i~~~~e~~d~~dl~~~~i~~kl~~ 139 (139)
++||+++.+.+| ++++|+||+|||++|++|.||+|||+|++|++.|+ +++++|++|.+||+++++.++|++
T Consensus 92 ~ly~~~~~~~~~-~~~klvfI~W~Pd~a~vk~KMlYAssk~~lk~~l~gi~~~i~atd~~El~~e~i~~kl~~ 163 (174)
T 1ak6_A 92 ALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEKLGG 163 (174)
T ss_dssp EECCCCCCCSSC-SCCCCCEEEECCSSSCHHHHHSHHHHHHHHHHHCTTCSCCEEESSTTTTCHHHHHHHTTT
T ss_pred EEEeCcccCCCC-ccccEEEEEECCCCCCHHHhhHHHHHHHHHHHHhcCCeEEEEECChhhcCHHHHHHHhcc
Confidence 999999988776 78999999999999999999999999999999996 999999999999999999999874
No 15
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A
Probab=100.00 E-value=8.8e-38 Score=225.97 Aligned_cols=129 Identities=22% Similarity=0.380 Sum_probs=118.6
Q ss_pred eeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeeeCCCccccC
Q psy12965 5 KVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYP 84 (139)
Q Consensus 5 ~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k 84 (139)
..++|+++|+++|++|+.+ .++||+|+|+.++++|+|++. .+.++++|.+.||+++|||+||+|++++. |+...+
T Consensus 20 v~~~v~~e~~~a~~~lk~~---~~~~iifkId~~~e~I~v~~~-~~~~~~df~~~Lp~~~pRY~vyd~~~~~~-g~~~~~ 94 (164)
T 3daw_B 20 VAFPISRDAFQALEKLSKK---QLNYVQLEIDIKNETIILANT-ENTELRDLPKRIPKDSARYHFFLYKHSHE-GDYLES 94 (164)
T ss_dssp CCCCBCHHHHHHHHHHHTT---SCSEEEEEEETTTTEEEEEEC-CCCCGGGSGGGSCSSSCEEEEEEEEEEET-TEEEEE
T ss_pred ceEEECHHHHHHHHHHHcC---CceEEEEEEeCCCCEEEEEeC-CCCCHHHHHHhCCccCceEEEEecccccC-CCcccc
Confidence 4568999999999999975 489999999999899999987 56799999999999999999999999876 666678
Q ss_pred eEEEEEeCC-CCChhhHHHHHhhhHHHHhhc----Cc--eeEEEecCCCcCCHHHHHHhhc
Q psy12965 85 MSFIYITPR-DAQMALQIMYAGTKLALQQEA----DL--TRVYEVRELEELTEEWLKSCLA 138 (139)
Q Consensus 85 ~vfI~w~Pd-~a~vk~KMlYassk~~l~~~l----~i--~~~~e~~d~~dl~~~~i~~kl~ 138 (139)
++||+|||+ +|++|.||+|||||++|++.+ |+ .+.+|++|++||++++|.++|.
T Consensus 95 ~ifi~~~P~~~a~ik~kMlYASsK~~l~~~l~~~~Gi~i~k~iea~d~~Elt~e~l~ekl~ 155 (164)
T 3daw_B 95 VVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYDEVH 155 (164)
T ss_dssp EEEEEECCSTTSCHHHHHHHHHTHHHHHHHHHHHHCCCEEEEEEESSSSSCCHHHHHHHHS
T ss_pred EEEEEEcCCCCCCHHHHHHHHHhHHHHHHHHhhccCCceeEEEEeCChHHcCHHHHHhHhC
Confidence 999999999 999999999999999999987 75 8999999999999999999874
No 16
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2
Probab=100.00 E-value=4e-37 Score=217.21 Aligned_cols=126 Identities=13% Similarity=0.119 Sum_probs=113.9
Q ss_pred ecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeeeCCCccccCeEE
Q psy12965 8 DIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSF 87 (139)
Q Consensus 8 ~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k~vf 87 (139)
..+++|+++|++|+.++.+.++|++|+|+. +++|+|+++|. ++++|.+.||+++|||++||++. +|+.++|++|
T Consensus 10 ~~~~e~~~a~~~~~~~~~~~~~~ii~~i~~-~~~i~v~~~g~--~~~el~~~l~~~~~rY~~~~~~~---~~~~~~k~vf 83 (141)
T 1hqz_1 10 THSREIDAEYLKIVRGSDPDTTWLIISPNA-KKEYEPESTGS--SFHDFLQLFDETKVQYGLARVSP---PGSDVEKIII 83 (141)
T ss_dssp TTHHHHHHHHHHHHHTCCTTCCEEEEEECT-TSCEEEEEEES--CHHHHHTCCCTTSCEEEEEEECC---TTCSCCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCceEEEEEEcC-CCEEEEEeecC--CHHHHHhhCCCCceEEEEEEEec---CCCceeeEEE
Confidence 345999999999998743469999999998 56899998875 89999999999999999999973 5678899999
Q ss_pred EEEeCCCCChhhHHHHHhhhHHHHh-hcC-ceeEEEecCCCcCCHHHHHHhhcC
Q psy12965 88 IYITPRDAQMALQIMYAGTKLALQQ-EAD-LTRVYEVRELEELTEEWLKSCLAG 139 (139)
Q Consensus 88 I~w~Pd~a~vk~KMlYassk~~l~~-~l~-i~~~~e~~d~~dl~~~~i~~kl~~ 139 (139)
|+|||++|++|.||+|||+|++|++ .|+ ++.+++++|.+||+++.|.++|++
T Consensus 84 I~w~Pd~~~vk~Kmlyas~k~~l~~~~l~g~~~~i~a~~~~el~~e~i~~kl~~ 137 (141)
T 1hqz_1 84 IGWCPDSAPLKTRASFAANFAAVANNLFKGYHVQVTARDEDDLDENELLMKISN 137 (141)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHTSCSCSEEEEESSGGGGCHHHHHHHHHT
T ss_pred EEECCCCCChhheEEEeccHHHHHHHhCCceEEEEEECChHHCCHHHHHHHHHh
Confidence 9999999999999999999999997 996 999999999999999999999863
No 17
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2
Probab=100.00 E-value=1.5e-37 Score=219.85 Aligned_cols=126 Identities=21% Similarity=0.294 Sum_probs=111.6
Q ss_pred eeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCC-----ChhHHHhcC-CCCCCeEEEEeeeeeeCC
Q psy12965 5 KVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDV-----SLDELRDIL-PSHQPRYVVYSCRMEHGD 78 (139)
Q Consensus 5 ~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~-----~~~el~~~L-~~~~pry~~~~~~~~~~~ 78 (139)
++|.++++|+++|++|+.++ +||++|+|+.+ +|+|++.+++. +|++|++.| |+++|||++||+++++.+
T Consensus 5 SGi~v~~e~~~~f~~~k~~k---~~~ii~~i~~~--~ivv~~~~~~~~~~~~~~~e~~~~l~~~~~~rY~~~~~~~~~~~ 79 (142)
T 1m4j_A 5 TGIQASEDVKEIFARARNGK---YRLLKISIENE--QLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVLFRLDSQNAQ 79 (142)
T ss_dssp --CCBCHHHHHHHHHHHTTT---CSEEEEEECSS--SEEEEEEECCCSCHHHHHHHHHGGGCCTTCCEEEEEEEEEEETT
T ss_pred CCCeECHHHHHHHHHHhcCC---eEEEEEEEcCC--EEEEEeecCCCccccccHHHHHHhhCCCCCceEEEEEcCcCCCC
Confidence 67899999999999999753 99999999764 88888876532 478999887 799999999999998865
Q ss_pred CccccCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcC-cee--EEEecCCCcCCHHHHHHhhc
Q psy12965 79 GRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEAD-LTR--VYEVRELEELTEEWLKSCLA 138 (139)
Q Consensus 79 g~~~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~-i~~--~~e~~d~~dl~~~~i~~kl~ 138 (139)
| +||+||+|||++|++|.||+|||||++|++.|+ ++. +++++|++||+++++.++|+
T Consensus 80 ~---~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~~~i~atd~~el~~~~i~~~l~ 139 (142)
T 1m4j_A 80 G---YEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLL 139 (142)
T ss_dssp E---EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCGGGEEEEEEESSHHHHSHHHHHHHHC
T ss_pred C---ceEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCceeEEEEEeCChHHCCHHHHHHHHh
Confidence 3 899999999999999999999999999999998 665 99999999999999999986
No 18
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=216.28 Aligned_cols=123 Identities=18% Similarity=0.268 Sum_probs=109.8
Q ss_pred eeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCC-----ChhHHHhcC-CCCCCeEEEEeeeeeeCC
Q psy12965 5 KVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDV-----SLDELRDIL-PSHQPRYVVYSCRMEHGD 78 (139)
Q Consensus 5 ~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~-----~~~el~~~L-~~~~pry~~~~~~~~~~~ 78 (139)
++|.++++|+++|++|+.++ +||++|+|+.+ +|+|++.+++. +|++|++.| |+++|||++||+++++.+
T Consensus 2 SGi~v~~e~~~~f~~~k~~k---~r~ii~~i~~~--~ivv~~~~~~~~~~~~~~~~~~~~l~~~~~prY~v~~~~~~~~~ 76 (134)
T 2vac_A 2 MGIHATEELKEFFAKARAGS---VRLIKVVIEDE--QLVLGASQEPVGRWDQDYDRAVLPLLDAQQPCYLLYRLDSQNAQ 76 (134)
T ss_dssp CSCEECHHHHHHHHHHHHSS---CSEEEEEEETT--EEEEEEEECCCSCHHHHHHHHHGGGCCTTCCEEEEEEEEEEETT
T ss_pred CCcEeCHHHHHHHHHHhcCC---eEEEEEEecCC--EEEEEeecCcCcccccCHHHHHHhcCCCCCCEEEEEECCcCCCC
Confidence 57899999999999999763 99999999874 89998876532 478999888 699999999999998875
Q ss_pred CccccCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcC-cee--EEEecCCCcCCHHHHHH
Q psy12965 79 GRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEAD-LTR--VYEVRELEELTEEWLKS 135 (139)
Q Consensus 79 g~~~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~-i~~--~~e~~d~~dl~~~~i~~ 135 (139)
| +||+||+|||++|++|.||+|||||++|++.|+ ++. +++++|++||+++.+..
T Consensus 77 ~---~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~~~i~atd~~el~~~~~~~ 133 (134)
T 2vac_A 77 G---FEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGTVKDDLSFAGYQK 133 (134)
T ss_dssp E---EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCGGGEEEEEEESSHHHHSHHHHHH
T ss_pred C---ceEEEEEEcCCCCCHHHHhHHHHHHHHHHHHcCCCeeeEEEEeCChHHcCHHHHhc
Confidence 4 899999999999999999999999999999998 665 99999999999998864
No 19
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A
Probab=100.00 E-value=5.8e-37 Score=212.54 Aligned_cols=113 Identities=15% Similarity=0.292 Sum_probs=104.1
Q ss_pred eeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCC---CeEEEEeeeeeeCCCcc
Q psy12965 5 KVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQ---PRYVVYSCRMEHGDGRV 81 (139)
Q Consensus 5 ~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~---pry~~~~~~~~~~~g~~ 81 (139)
++|.++++|+++|++|+.++ ++|||+|+|+. ++|+|+..+++.+|++|.+.||+++ |||++||+
T Consensus 5 SGi~vs~e~~~~f~~lk~~k--~~~~ii~kI~~--~~ivv~~~~~~~~~~~f~~~Lp~~~~~~prY~vy~~--------- 71 (124)
T 3q2b_A 5 SGIRVNDNCVTEFNNMKIRK--TCGWIIFVIQN--CEIIIHSKGASTTLTELVQSIDKNNEIQCAYVVFDA--------- 71 (124)
T ss_dssp CSCEECHHHHHHHHHHHHHT--SSEEEEEEEET--TEEEEEEEEECSCHHHHHHHHHHCTTCSEEEEEEEC---------
T ss_pred CCCccCHHHHHHHHHHhcCC--CcEEEEEEEcC--CEEEEeccCCCCCHHHHHHHccccCCCCcEEEEEec---------
Confidence 68999999999999999875 69999999997 4899988876679999999999999 99999998
Q ss_pred ccCeEEEEEeCCCCChhhHHHHHhhhHHHHhhcC-ce-eEEEecCCCcCCH
Q psy12965 82 SYPMSFIYITPRDAQMALQIMYAGTKLALQQEAD-LT-RVYEVRELEELTE 130 (139)
Q Consensus 82 ~~k~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~-i~-~~~e~~d~~dl~~ 130 (139)
+++++||+|||++|++|.||+|||||++|++.|+ ++ ++++++|.+||++
T Consensus 72 ~~k~vfI~w~Pd~a~vk~KMlYASsk~~l~~~l~g~~~~~i~a~d~~dlt~ 122 (124)
T 3q2b_A 72 VSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNVLTSVIESAQDVAD 122 (124)
T ss_dssp SSCEEEEEEECTTSCHHHHHHHHHHHHHHHTTSTTSEECCSCBCSHHHHTT
T ss_pred CCCEEEEEECCCCCChhHhhhhHHHHHHHHHHhCCCceEEEEecCHHHccc
Confidence 3699999999999999999999999999999997 87 7999999999874
No 20
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=209.87 Aligned_cols=124 Identities=14% Similarity=0.082 Sum_probs=113.5
Q ss_pred HHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeeeCCCccccCeEEEEE
Q psy12965 11 DDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFIYI 90 (139)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w 90 (139)
++|+++|++++.++. .+||++|+|+.+.++|+|...|+ .+|+||.+.||+++|||++||++.+ +..++|++||.|
T Consensus 17 ~e~~~a~~~v~~~~~-~~~wi~~~i~~~~~~l~v~~~G~-~~~~e~~~~L~~~~~~Y~~~r~~~~---~~~~~K~vfI~W 91 (146)
T 1x67_A 17 PALQEAYVRVVTEKS-PTDWALFTYEGNSNDIRVAGTGE-GGLEEMVEELNSGKVMYAFCRVKDP---NSGLPKFVLINW 91 (146)
T ss_dssp HHHHHHHHHHHCSSS-SCSEEEEEESSSSSCEEEEEEES-SCHHHHHHHCCTTSEEEEEEEEECS---SSCSEEEEEEEE
T ss_pred HHHHHHHHHHHcCCC-CccEEEEEEeCCCcEEEEEeccC-CCHHHHHhhCCCCceEEEEEEEEcC---CCCeeeEEEEEE
Confidence 999999999998753 59999999988767899998875 4899999999999999999999753 456889999999
Q ss_pred eCCCCChhhHHHHHhhhHHHHhhcC-ceeEEEecCCCcCCHHHHHHhhcC
Q psy12965 91 TPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEELTEEWLKSCLAG 139 (139)
Q Consensus 91 ~Pd~a~vk~KMlYassk~~l~~~l~-i~~~~e~~d~~dl~~~~i~~kl~~ 139 (139)
|||++|+|.||+||+++++|++.|+ ++.++++++++||+++.|.+++++
T Consensus 92 ~pd~a~v~~Km~yas~k~~lk~~l~g~~~ei~at~~~el~~~~i~~k~~~ 141 (146)
T 1x67_A 92 TGEGVNDVRKGACASHVSTMASFLKGAHVTINARAEEDVEPECIMEKVAS 141 (146)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHTTTEEEEECCCSGGGGCHHHHHHHHHC
T ss_pred CCCCCChhheeeehhhHHHHHHhcCCcEEEEEeCChHHCCHHHHHHHHHh
Confidence 9999999999999999999999998 999999999999999999999863
No 21
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=100.00 E-value=1.2e-35 Score=209.57 Aligned_cols=113 Identities=25% Similarity=0.453 Sum_probs=101.9
Q ss_pred eeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeeeCCCccccC
Q psy12965 5 KVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYP 84 (139)
Q Consensus 5 ~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k 84 (139)
++|+++++|+++|++|+.++ +++||+|+|+. ++|++++.+++ ++++|.+.||+++|||++|| +| ++
T Consensus 24 sGi~vs~e~~~af~~lk~~k--~~~~ii~~I~~--~eivv~~~g~~-~~~el~~~Lp~~~prY~~y~------dg---~k 89 (139)
T 2l72_A 24 SGMGVDENCVARFNELKIRK--TVKWIVFKIEN--TKIVVEKDGKG-NADEFRGALPANDCRFGVYD------CG---NK 89 (139)
T ss_dssp TTCEECHHHHHHHHHHTTTT--CCCEEEEEEET--TEEEEEEEESS-HHHHHHHHCCCCSCCEEEEE------CS---SC
T ss_pred CCCCcCHHHHHHHHHHhCCC--CeeEEEEEEcC--CEEEEeecCCC-CHHHHHHhCCCCCcEEEEEc------CC---Cc
Confidence 56799999999999999865 69999999998 57888887765 89999999999999999999 34 79
Q ss_pred eEEEEEeCCCCChhhHHHHHhhhHHHHhhcC-ceeE-EEecCCCcCCHH
Q psy12965 85 MSFIYITPRDAQMALQIMYAGTKLALQQEAD-LTRV-YEVRELEELTEE 131 (139)
Q Consensus 85 ~vfI~w~Pd~a~vk~KMlYassk~~l~~~l~-i~~~-~e~~d~~dl~~~ 131 (139)
++||+|||++|++|.||+|||||++|++.|+ ++.. +++++.+||+++
T Consensus 90 ~vFI~w~Pd~a~vk~KMlYASsk~~lk~~l~g~~v~~iea~~~~DLte~ 138 (139)
T 2l72_A 90 IQFVLWCPDNAPVKPRMTYASSKDALLKKLDGATAVALEAHEMGDLAPL 138 (139)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHHHHHCSCCSCEEEESSTTTTSCC
T ss_pred EEEEEECCCCCChhHeeehHhhHHHHHHHhCCceEEEEEeCCHHHCccC
Confidence 9999999999999999999999999999997 5543 999999999864
No 22
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A
Probab=100.00 E-value=3.8e-33 Score=197.16 Aligned_cols=123 Identities=11% Similarity=0.099 Sum_probs=112.2
Q ss_pred CHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeeeCCCccccCeEEEE
Q psy12965 10 DDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFIY 89 (139)
Q Consensus 10 s~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~ 89 (139)
+++|.++|++++.+++ .++|++|+++.+ +|+|++.|+ +|+||++.||+++|||++||+. .+.+++.++|++||.
T Consensus 6 ~~~~~~a~~~v~~~~~-~~~wilf~~~~~--~i~v~~~G~--g~~e~~~~L~~~~~~Ya~~r~~-~~~~~~~~~K~vfI~ 79 (141)
T 1t3y_A 6 KEACRAAYNLVRDDGS-AVIWVTFKYDGS--TIVPGEQGA--EYQHFIQQCTDDVRLFAFVRFT-TGDAMSKRSKFALIT 79 (141)
T ss_dssp HHHHHHHHHHHHCTTS-SCCEEEEEEETT--EEEEEEEES--SHHHHHHHCCTTCEEEEEEEEE-ECSGGGCEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCC-CceEEEEEEcCC--EEEEEecCC--CHHHHHhhCCCCceEEEEEEEE-ecCCCCceeeEEEEE
Confidence 5899999999998753 599999999873 599998886 5999999999999999999995 445567899999999
Q ss_pred EeCCCCChhhHHHHHhhhHHHHhhcC-ceeEEEecCCCcCCHHHHHHhhc
Q psy12965 90 ITPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEELTEEWLKSCLA 138 (139)
Q Consensus 90 w~Pd~a~vk~KMlYassk~~l~~~l~-i~~~~e~~d~~dl~~~~i~~kl~ 138 (139)
|||++++++.||+||+++++|++.|. ++.+++++|++||+++.|.++++
T Consensus 80 W~pd~~~~~~K~~~as~k~~vk~~l~g~~~~i~a~d~~el~~~~I~~kv~ 129 (141)
T 1t3y_A 80 WIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELEEDFIKSELK 129 (141)
T ss_dssp EECTTSCHHHHHHHHHHHHHHTTTSCCCSEEEEECSGGGGSHHHHHHHHH
T ss_pred ECCCCCCHHHhhhHHHHHHHHHHHhcccEEEEEeCChHHCCHHHHHHHHH
Confidence 99999999999999999999999997 99999999999999999999875
No 23
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=48.85 E-value=41 Score=21.41 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=40.2
Q ss_pred HHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEE
Q psy12965 12 DVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVY 70 (139)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~ 70 (139)
++..++.++..-. ..+..+..+|.+.+.+.+.=.|.+.+|+++.+.+..-.+.-.=.
T Consensus 23 d~A~~l~~~~gV~--gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg~IHSI 79 (97)
T 2raq_A 23 EYAKYLSELRGVE--GVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSIHSV 79 (97)
T ss_dssp HHHHHHHHSTTCC--EEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhCCCcc--eEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEee
Confidence 4455666665332 58888888999988888877788889999887766555544333
No 24
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=45.08 E-value=58 Score=22.07 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=50.4
Q ss_pred HHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeeeCCCccccCeEEEEEeCCCC
Q psy12965 16 ALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDA 95 (139)
Q Consensus 16 ~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w~Pd~a 95 (139)
+|+..- + ....-|++|++. +.+.|.... +- .|-. .-||++.. .+....| +...++-+|....|
T Consensus 7 ~f~~~g--~--~~gl~VWrIe~~-~~~~vp~~~----~G----~Fy~-gd~YIvl~-ty~~~~g--~~~~~i~~W~G~~s 69 (147)
T 1t44_G 7 EFLKAG--K--EPGLQIWRVEKF-DLVPVPTNL----YG----DFFT-GDAYVILK-TVQLRNG--NLQYDLHYWLGNEC 69 (147)
T ss_dssp HHHHTT--S--SSEEEEEEEETT-EEEECCGGG----TT----EEET-TCEEEEEE-EEECTTS--CEEEEEEEEECTTC
T ss_pred hhhccC--C--CCCeEEEEEeCC-EEEECChHH----cC----eecC-CCeEEEEE-EEecCCC--ceEEEEEEEeCCCC
Confidence 555543 2 456778999853 444443321 21 2233 45666543 2333233 33578889999999
Q ss_pred ChhhHHHHHhhhHHHHhhcC
Q psy12965 96 QMALQIMYAGTKLALQQEAD 115 (139)
Q Consensus 96 ~vk~KMlYassk~~l~~~l~ 115 (139)
+..++...|.--..|.+.+|
T Consensus 70 s~de~g~Aa~~aveLd~~lg 89 (147)
T 1t44_G 70 SQDESGAAAIFTVQLDDYLN 89 (147)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHHHHHHHcC
Confidence 99999887776667777777
No 25
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=37.36 E-value=45 Score=21.18 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=39.0
Q ss_pred HHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEE
Q psy12965 12 DVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVY 70 (139)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~ 70 (139)
++..++.++..-. ..+..+..+|.+.+.+.+.=.|.+.+|+++.+.+..-.+.-.=.
T Consensus 22 d~A~~l~~~~gV~--gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg~IHSI 78 (96)
T 2x3d_A 22 DLAERISKLDGVE--GVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGCAIHSI 78 (96)
T ss_dssp HHHHHHHTSTTEE--EEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhCCCcc--eEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEee
Confidence 4455555565322 57778888998888888777788889999887766555544333
No 26
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=36.35 E-value=26 Score=22.47 Aligned_cols=58 Identities=9% Similarity=0.107 Sum_probs=39.9
Q ss_pred HHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEe
Q psy12965 12 DVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYS 71 (139)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~ 71 (139)
++..++.++..-. ..+..+..+|.+.+.+.+.=+|.+.+|+++.+.+.+-.+.-.=.|
T Consensus 23 dlA~~l~~~~gV~--gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~GgvIHSID 80 (100)
T 3bpd_A 23 VFALKLSELENVD--GVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVIHSVD 80 (100)
T ss_dssp HHHHHHHTSTTEE--EEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHhCCCcc--eEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeee
Confidence 4455555665322 577888889988888877767777899999877776555544443
No 27
>3vbh_A EV71, genome polyprotein, capsid protein VP1; hand-foot-and-mouth disease, enterovirus uncoating, P factor, adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71} PDB: 3vbf_A* 3vbo_A 3vbs_A* 4aed_A* 3vbr_A 3vbu_A
Probab=36.26 E-value=49 Score=25.31 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=25.9
Q ss_pred hhHHHhcCCCCCCeEEEEeeeeee----CCCccccCeEEEEEeCCCCChhh
Q psy12965 53 LDELRDILPSHQPRYVVYSCRMEH----GDGRVSYPMSFIYITPRDAQMAL 99 (139)
Q Consensus 53 ~~el~~~L~~~~pry~~~~~~~~~----~~g~~~~k~vfI~w~Pd~a~vk~ 99 (139)
..+|+.+|. ---|.-+|++++- ..|....-.+-|+|+|.+||+..
T Consensus 116 ~~QlRrKLe--~FTY~RfDlEvT~V~t~~~~~~~~~~~QvmyvPpGaP~p~ 164 (297)
T 3vbh_A 116 YAQMRRKVE--LFTYMRFDAEFTFVACTPTGEVVPQLLQYMFVPPGAPKPD 164 (297)
T ss_dssp SHHHHHHHT--TEEEEEEEEEEEEEEECTTSCCCCCEEEEEEECTTSCCCC
T ss_pred HHHHHhhhc--eeEEEeeeeEEEEEEecCCCCCCceEEEEEEcCCCCCCCC
Confidence 445555552 2556666666551 12222233467999999999643
No 28
>1ncq_A Coat protein VP1; HRV, pleconaril, icosahedral virus; HET: W11; 2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB: 1d3i_1* 1hrv_1* 1hri_1* 1na1_A* 1k5m_A* 1r08_1* 1r09_1* 1rvf_1 1vrh_1* 2hwb_1* 2hwc_1* 2r04_1* 2r06_1* 2r07_1* 2rm2_1* 2rr1_1* 2rs1_1* 2rs3_1* 2rs5_1* 4rhv_1 ...
Probab=34.01 E-value=55 Score=24.82 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=21.4
Q ss_pred CeEEEEeeeeee---C---CC--ccccCeEEEEEeCCCCChhh
Q psy12965 65 PRYVVYSCRMEH---G---DG--RVSYPMSFIYITPRDAQMAL 99 (139)
Q Consensus 65 pry~~~~~~~~~---~---~g--~~~~k~vfI~w~Pd~a~vk~ 99 (139)
--|.-+|++.+- . .| ....-.+-|+|+|.+||+..
T Consensus 119 FTY~RfDlEvT~V~t~~~~~~~~~~~~~~~qvmyvPpGaP~p~ 161 (289)
T 1ncq_A 119 FTYVRFDSEYTILATASQPDSANYSSNLVVQAMYVPPGAPNPK 161 (289)
T ss_dssp EEEEEEEEEEEEEEEEECCSCCSSCCCCEEEEEEECTTSCCCC
T ss_pred ceEEcccEEEEEEEcCCccCCcccCCceEEEEEEeCCCCCCCc
Confidence 367777777661 1 01 12223456999999999754
No 29
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=32.55 E-value=66 Score=24.25 Aligned_cols=37 Identities=5% Similarity=0.085 Sum_probs=25.5
Q ss_pred CcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeee
Q psy12965 39 KQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEH 76 (139)
Q Consensus 39 ~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~ 76 (139)
+|-|..+..+. .++..|...+....++|.+||+-+-+
T Consensus 80 GElv~~d~~g~-~~F~~l~~r~~~~~~~~~vFDll~~~ 116 (310)
T 1vs0_A 80 GEAVVLDSSGV-PSFSQMQNRGRDTRVEFWAFDLLYLD 116 (310)
T ss_dssp EEEECBCTTSC-BCHHHHHTCCTTSCCEEEEEEEEEET
T ss_pred eEEEEECCCCC-cCHHHHHhhccCCcEEEEEEEeEEEC
Confidence 33444443332 37889888887778999999998653
No 30
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A
Probab=30.47 E-value=94 Score=20.36 Aligned_cols=75 Identities=9% Similarity=0.066 Sum_probs=45.3
Q ss_pred CccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeeeCCCccccCeEEEEEeCCCCChhhHHHHHhh
Q psy12965 27 SNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGT 106 (139)
Q Consensus 27 ~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w~Pd~a~vk~KMlYass 106 (139)
....-|++|++. +.+.|.+.. .-.|-. .-||++.. .+. ..| +...++-+|....|+..++..-|.-
T Consensus 15 ~~~l~vWrIe~~-~~~~vp~~~--------~G~Fy~-gd~YIvl~-t~~-~~g--~~~~~i~~W~G~~ss~de~g~Aa~~ 80 (126)
T 2vik_A 15 TPGIQIWRIENM-EMVPVPTKS--------YGNFYE-GDCYVLLS-TRK-TGS--GFSYNIHYWLGKNSSQDEQGAAAIY 80 (126)
T ss_dssp CCEEEEEECGGG-SCCEECTTT--------TTCCCS-SSCEEEEE-EEE-CSS--SEEEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEeCC-EEEECChhh--------cCeeCC-CCeEEEEE-ecc-CCC--ceeEEEEEEeCCCCCchhHHHHHHH
Confidence 455667777642 333343221 123344 44555543 232 233 2357788999999999999887776
Q ss_pred hHHHHhhcC
Q psy12965 107 KLALQQEAD 115 (139)
Q Consensus 107 k~~l~~~l~ 115 (139)
-..|-+.+|
T Consensus 81 aveLd~~lg 89 (126)
T 2vik_A 81 TTQMDEYLG 89 (126)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 677777777
No 31
>1z7s_1 Human coxsackievirus A21; picornavirus, capsid protein, viral protein, icosahedral virus; HET: MYR G; 3.20A {Human coxsackievirus A21} PDB: 1z7z_1*
Probab=28.66 E-value=78 Score=24.11 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=21.1
Q ss_pred CeEEEEeeeeee---C---CC---ccccCeEEEEEeCCCCChhh
Q psy12965 65 PRYVVYSCRMEH---G---DG---RVSYPMSFIYITPRDAQMAL 99 (139)
Q Consensus 65 pry~~~~~~~~~---~---~g---~~~~k~vfI~w~Pd~a~vk~ 99 (139)
.-|.-+|++.+- . .| ....-.+-|+|+|.+||+..
T Consensus 120 FTY~RfDlEvT~V~t~~~~~~~~~~~~~~~~qvmyvPpGAP~p~ 163 (298)
T 1z7s_1 120 FTYSRFDLEMTFVFTENYPSTASGEVRNQVYQIMYIPPGAPRPS 163 (298)
T ss_dssp EEEEEEEEEEEEEEEEECCSSCCCCCCCCEEEEEEECTTSCCCS
T ss_pred ceEEeccEEEEEEEcccccCCcccCCCceEEEEEEcCCCCCCCC
Confidence 367777777661 0 11 01112346999999999754
No 32
>1fmd_1 Foot-and-mouth disease virus (subunit VP1); icosahedral virus; 3.50A {Foot-and-mouth disease virus} SCOP: b.121.4.1 PDB: 1qgc_1 1qgc_5
Probab=27.39 E-value=47 Score=24.08 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=21.5
Q ss_pred CCeEEEEeeeeeeCCCccccCeEEEEEeCCCCChhh
Q psy12965 64 QPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMAL 99 (139)
Q Consensus 64 ~pry~~~~~~~~~~~g~~~~k~vfI~w~Pd~a~vk~ 99 (139)
-.-|..+|++.+-.. -.-|+|+|.+||+..
T Consensus 68 ~FTY~rfDlEvtvv~------~~qvmyvPpGaP~p~ 97 (208)
T 1fmd_1 68 AATYYFSDLEIAVTH------TGKLTWVPNGAPVSA 97 (208)
T ss_dssp TEEEEEEEEEEEEEE------EEEEEEECTTCCGGG
T ss_pred ccEEEeccEEEEEEE------eeEEEEECCCCCchh
Confidence 456777777765321 158999999999875
No 33
>1tme_1 Theiler'S murine encephalomyelitis virus (subunit VP1); icosahedral virus; 2.80A {Theiler} SCOP: b.121.4.1 PDB: 1tmf_1
Probab=26.95 E-value=68 Score=24.23 Aligned_cols=34 Identities=12% Similarity=0.012 Sum_probs=21.4
Q ss_pred CeEEEEeeeeeeCCCccccCeEEEEEeCCCCChh
Q psy12965 65 PRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMA 98 (139)
Q Consensus 65 pry~~~~~~~~~~~g~~~~k~vfI~w~Pd~a~vk 98 (139)
.-|.-+|++.+-.-....+-.+-|+|+|.+|++.
T Consensus 120 FTY~rfDLEvTvv~~~~~~~~~qvmyvPpGaP~p 153 (274)
T 1tme_1 120 FTYYKCDLEVTVSALGTDTVASVLRWAPTGAPAD 153 (274)
T ss_dssp EEEEEEEEEEEEEECSCSCCEEEEEEECTTCCCC
T ss_pred ceEecccEEEEEEEcCCCCceEEEEEcCCCCCCC
Confidence 4677777776532111112346799999999976
No 34
>2mev_1 Mengo virus coat protein (subunit VP1); cardio picornavirus coat protein, icosahedral virus; 3.00A {Mengo virus} SCOP: b.121.4.1 PDB: 1mec_1
Probab=24.99 E-value=67 Score=24.28 Aligned_cols=34 Identities=6% Similarity=-0.054 Sum_probs=20.7
Q ss_pred CeEEEEeeeeeeCCCccccCeEEEEEeCCCCChh
Q psy12965 65 PRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMA 98 (139)
Q Consensus 65 pry~~~~~~~~~~~g~~~~k~vfI~w~Pd~a~vk 98 (139)
.-|.-+|++.+-.-.....--.-|+|+|.+|++.
T Consensus 120 FTY~rfDLEvtvv~~~~~~~~~~vmyvPpGaP~~ 153 (277)
T 2mev_1 120 FVYYKCDLEVTLSPHTSGAHGLLVRWCPTGTPTK 153 (277)
T ss_dssp CSEEEEEEEEEEEESCSSCCCEEEEEECTTSCCC
T ss_pred ceEecccEEEEEEEcCCCCcceEEEECCCCCCCC
Confidence 4677888877632110001123599999999975
No 35
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=24.61 E-value=47 Score=27.01 Aligned_cols=34 Identities=9% Similarity=0.250 Sum_probs=27.7
Q ss_pred ChhHHHhcCCCCCCeEEEEeeeeeeCCCccccCeEEEEEe
Q psy12965 52 SLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFIYIT 91 (139)
Q Consensus 52 ~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w~ 91 (139)
+|+||...|..+--||++|....++ .++||+...
T Consensus 193 ~W~DLkrRL~pdRRCfaFFHp~mP~------EPLIfVeVA 226 (460)
T 2ygw_A 193 NWMDMKRRVGPYRRCYFFSHCSTPG------EPLVVLHVA 226 (460)
T ss_dssp SHHHHHHHTSTTEEEEEEEETTBTT------CCSEEEEEE
T ss_pred CHHHHHHhcCCCCeEEEecCCCCCC------CCeEEEeec
Confidence 8999999998889999999876542 578888764
No 36
>1aym_1 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} SCOP: b.121.4.1 PDB: 1ayn_1* 1c8m_1* 1ncr_A* 1nd2_A* 1nd3_A* 1qju_1* 1qjx_1* 1qjy_1* 1d3e_1 1fpn_1* 1v9u_1* 3dpr_A* 3tn9_1 1r1a_1* 2hwd_1* 2hwe_1* 2hwf_1*
Probab=23.70 E-value=1.1e+02 Score=23.07 Aligned_cols=15 Identities=13% Similarity=0.147 Sum_probs=12.1
Q ss_pred eEEEEEeCCCCChhh
Q psy12965 85 MSFIYITPRDAQMAL 99 (139)
Q Consensus 85 ~vfI~w~Pd~a~vk~ 99 (139)
..-|+|+|.+||+..
T Consensus 139 ~~qvmyvPPGap~p~ 153 (285)
T 1aym_1 139 VMQYMYVPPGAPIPT 153 (285)
T ss_dssp EEEEEEECTTSCCCS
T ss_pred EEEEEEcCCCCCCCC
Confidence 356999999999754
No 37
>1vmf_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; HET: EPE; 1.46A {Bacillus halodurans} SCOP: d.273.1.1
Probab=23.13 E-value=95 Score=21.10 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=34.7
Q ss_pred CeeeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeecc-CCC--ChhHHHhcC-CCCCC
Q psy12965 3 PVKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLM-EDV--SLDELRDIL-PSHQP 65 (139)
Q Consensus 3 ~~~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~-~~~--~~~el~~~L-~~~~p 65 (139)
+.-++.|++++.+++.+-..+. =.+.+.+.-.+-.|.+.+.. +++ +++.+++.| |++.|
T Consensus 23 ~~~~~dIT~~V~~~v~~sgi~~----Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~~~~ 85 (145)
T 1vmf_A 23 RDEMVDITSQIETWIRETGVTN----GVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPWHHE 85 (145)
T ss_dssp SSEEEECHHHHHHHHHHHTCCS----EEEEEEESCSSEEEEEEESSCHHHHHHHHHHHHHHSCSCCT
T ss_pred CCeEEECHHHHHHHHHHcCCcc----eEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhcCCCCC
Confidence 3468899999999987533221 13333444455677776652 222 566666655 76653
No 38
>1bev_1 Bovine enterovirus coat proteins VP1 to VP4; bovine enterovirus VG-5-27, picornavirus, icosahedral virus; HET: MYR; 3.00A {Bovine enterovirus} SCOP: b.121.4.1
Probab=23.00 E-value=1.1e+02 Score=23.14 Aligned_cols=35 Identities=9% Similarity=0.101 Sum_probs=21.3
Q ss_pred CeEEEEeeeeee---CCC-----ccccCeEEEEEeCCCCChhh
Q psy12965 65 PRYVVYSCRMEH---GDG-----RVSYPMSFIYITPRDAQMAL 99 (139)
Q Consensus 65 pry~~~~~~~~~---~~g-----~~~~k~vfI~w~Pd~a~vk~ 99 (139)
.-|.-+|++.+- ..+ ....-.+-|+|+|.+||+..
T Consensus 112 FTY~RfDlEvT~V~t~~~~~~~~~~~~~~~qvmyvPpGaP~p~ 154 (281)
T 1bev_1 112 FTYMRFDVEFTIIATSSTGQNVTTEQHTTYQVMYVPPGAPVPS 154 (281)
T ss_dssp EEEEEEEEEEEEEEECBCTTSCBCCCCCEEEEEEECTTSCCCC
T ss_pred ceEEcCCEEEEEEEcCCcccCCCCCCceEEEEEEcCCCCCCCc
Confidence 467777777661 111 11112346999999999754
No 39
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=22.47 E-value=1.8e+02 Score=21.95 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=49.7
Q ss_pred cEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeeeCCCccccCeEEEEEeCCCCChhhHHHHHhhhH
Q psy12965 29 AALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKL 108 (139)
Q Consensus 29 ~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w~Pd~a~vk~KMlYassk~ 108 (139)
=.-|.+|++ .+.+.|.+. .+-.| =. .-||+|+.. +....|. .....-+|+...++.-++...|.---
T Consensus 34 Gl~iWrIe~-~~~~~v~~~----~~G~F----y~-gd~Yivl~t-~~~~~g~--~~~~i~~W~G~~ss~de~g~aa~~av 100 (297)
T 3tu5_B 34 GLQIWRVEK-FDLVPVPTN----LYGDF----FT-GDAYVILKT-VQLRNGN--LQYDLHYWLGNECSQDESGAAAIFTV 100 (297)
T ss_dssp EEEEEEEET-TEEEECCGG----GTTEE----ET-TCEEEEEEE-EECTTSC--EEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ceEEEEEcC-CEEEECCHH----HcCee----cC-CCeEEEeEe-EECCCCc--eeEEEEEEeCCCCChhHHHHHHHHHH
Confidence 356788875 334444332 12222 22 557776642 3333343 34667799999999999977777666
Q ss_pred HHHhhcC---ce-eEEEecCC
Q psy12965 109 ALQQEAD---LT-RVYEVREL 125 (139)
Q Consensus 109 ~l~~~l~---i~-~~~e~~d~ 125 (139)
.|...|| ++ .++|.++.
T Consensus 101 ~Ld~~lgg~~vq~Re~Qg~Es 121 (297)
T 3tu5_B 101 QLDDYLNGRAVQHREVQGFES 121 (297)
T ss_dssp HHHHHTTTCCEEEEEETTCCC
T ss_pred HHHHHcCCCceEEEEeCCcCC
Confidence 7777887 33 44444443
No 40
>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4, U119A_human, HR3066A, NESG, structural genomics, PSI-2, protein structure initiative; 1.95A {Homo sapiens} PDB: 3rbq_A*
Probab=21.86 E-value=1.7e+02 Score=20.90 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=25.3
Q ss_pred CccEEEEEE-eCCCcEEEEeeccCCC--ChhHHHhcCCCCCCeEEEEeeee
Q psy12965 27 SNAALILKV-DREKQRICIDDLMEDV--SLDELRDILPSHQPRYVVYSCRM 74 (139)
Q Consensus 27 ~~~~vi~~I-~~~~~~I~v~~~~~~~--~~~el~~~L~~~~pry~~~~~~~ 74 (139)
++.+.-|+| |.++++|..+-..+.. ...+....++.+..|++-|.+..
T Consensus 40 ~I~F~~F~IRD~etg~vLFei~k~~~~~~~~~~~~~~~~~~~R~vrYqF~~ 90 (195)
T 3gqq_A 40 KIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTP 90 (195)
T ss_dssp CCEEEEEEEEETTTCCEEEEEECCC--------------CTTCEEEEECCG
T ss_pred eeEEEEEEEeccCCCCEEEEecCCCCccccccccccCCccccceEEEEeCH
Confidence 477888888 5666677655333211 22233556677899999999863
No 41
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=20.82 E-value=1.8e+02 Score=18.95 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=50.8
Q ss_pred HHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCCChhHHHhcCCCCCCeEEEEeeeeeeCCCccccCeEEEEEeCCCC
Q psy12965 16 ALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDA 95 (139)
Q Consensus 16 ~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~~~~el~~~L~~~~pry~~~~~~~~~~~g~~~~k~vfI~w~Pd~a 95 (139)
+|+..- + ....-|.+|++. +.+.|.+.. +- .|-. .-||++.. .+....|+ ....+-+|....|
T Consensus 10 ~~~~~g--~--~~gl~vWrIe~~-~~~~vp~~~----~G----~Fy~-gd~YIvl~-ty~~~~g~--~~~~i~~W~G~~s 72 (128)
T 3cip_G 10 EFLKAG--K--EPGLQIWRVEKF-DLVPVPTNL----YG----DFFT-GDAYVILK-TVQLRNGN--LQYDLHYWLGNEC 72 (128)
T ss_dssp HHHHTT--S--SSEEEEEEEETT-EEEECCGGG----TT----EEET-TCEEEEEE-EEECTTSC--EEEEEEEEECTTC
T ss_pred hHHhcC--C--CCCeEEEEEeCC-EEEECChHH----cC----eecC-CCeEEEEE-EEecCCCc--eEEEEEEEcCCCC
Confidence 555543 2 456778899853 344443221 11 2233 45666543 23333333 3567889999999
Q ss_pred ChhhHHHHHhhhHHHHhhcC
Q psy12965 96 QMALQIMYAGTKLALQQEAD 115 (139)
Q Consensus 96 ~vk~KMlYassk~~l~~~l~ 115 (139)
+..++...|.--..|-+.+|
T Consensus 73 s~de~g~Aa~~aveLd~~lg 92 (128)
T 3cip_G 73 SQDESGAAAIFTVQLDDYLN 92 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred CcchHHHHHHHHHHHHHHcC
Confidence 99999887777777777887
No 42
>1d4m_1 Protein (coxsackievirus A9); picornavirus structure, RGD, uncoating, virus-receptor interaction, WIN compound, virus/viral protein; HET: MYR W71; 2.90A {Human coxsackievirus A9} SCOP: b.121.4.1 PDB: 1h8t_A* 1upn_A 2c8i_A 1m11_1 2x5i_A* 3iyp_A*
Probab=20.33 E-value=1.4e+02 Score=22.66 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=12.1
Q ss_pred eEEEEEeCCCCChhh
Q psy12965 85 MSFIYITPRDAQMAL 99 (139)
Q Consensus 85 ~vfI~w~Pd~a~vk~ 99 (139)
..-|+|+|.+||+..
T Consensus 141 ~~qvmyvPpGAP~p~ 155 (299)
T 1d4m_1 141 THQIMYVPPGGPIPA 155 (299)
T ss_dssp EEEEEEECTTSCCCS
T ss_pred EEEEEECCCCCCCCC
Confidence 356999999999754
No 43
>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase, structural genomics, JO center for structural genomics, JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1
Probab=20.28 E-value=1e+02 Score=21.13 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=35.4
Q ss_pred CeeeeecCHHHHHHHHHhhcccCCCccEEEEEEeCCCcEEEEeeccCCC--ChhHHHhcC-CCCCC
Q psy12965 3 PVKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDV--SLDELRDIL-PSHQP 65 (139)
Q Consensus 3 ~~~~i~is~~~~~~~~~l~~~~~~~~~~vi~~I~~~~~~I~v~~~~~~~--~~~el~~~L-~~~~p 65 (139)
+.-++.|++++.+++.+-..+ .=.+.+.+.-.+-.|.+.+..+++ +++.+++.| |++.+
T Consensus 27 ~~~~~dIT~~V~~~v~~sgi~----~Gl~~vf~~HTTAsltInEndp~v~~Dl~~~l~rlvP~~~~ 88 (151)
T 1vmj_A 27 RREFINITPLLEECVRESGIK----EGLLLCNAMHITASVFINDDEPGLHHDFEVWLEKLAPEKPY 88 (151)
T ss_dssp SSEEEECHHHHHHHHHHHCCS----SEEEEEEESSTTEEEEEECCCHHHHHHHHHHHHHHSCCCCG
T ss_pred CCeEEEChHHHHHHHHHcCCc----ccEEEEEeCCCcEEEEEEcCCccHHHHHHHHHHHhCCCCCC
Confidence 346889999999999854322 113344444555677776553222 566666655 76653
Done!