RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12965
(139 letters)
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein,
cytoskeleton, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Length = 151
Score = 125 bits (316), Expect = 3e-38
Identities = 67/135 (49%), Positives = 101/135 (74%)
Query: 1 SQPVKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDIL 60
S+ + VCD+ +D+ E L+KFRFRK NAA+I+K+D++++ + +D+ +E VS DEL+D L
Sbjct: 8 SESLVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELEGVSPDELKDEL 67
Query: 61 PSHQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVY 120
P QPR++VYS + +H DGRVSYP+ FI+ +P + Q+MYAG+K L Q A+LT+V+
Sbjct: 68 PERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVF 127
Query: 121 EVRELEELTEEWLKS 135
E+R E+LTEEWL+
Sbjct: 128 EIRNTEDLTEEWLRE 142
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN
JCSG, protein structure initiative, PSI, joint center
for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2
PDB: 1wfs_A 3l50_A
Length = 154
Score = 125 bits (314), Expect = 6e-38
Identities = 65/134 (48%), Positives = 100/134 (74%)
Query: 1 SQPVKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDIL 60
S + VC++D ++KE L+KFRFRK +NAA+I+KVD+++Q + ++D ++++S +EL+ L
Sbjct: 14 SDSLVVCEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISPEELKLEL 73
Query: 61 PSHQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVY 120
P QPR+VVYS + H DGRVSYP+ FI+ +P + Q+MYAG+K L Q A+LT+V+
Sbjct: 74 PERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVF 133
Query: 121 EVRELEELTEEWLK 134
E+R ++LTE WLK
Sbjct: 134 EIRTTDDLTETWLK 147
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding,
cofilin-like, phosphoprotein, phosphorylation,
transferase, protein tyros kinase-9; 1.8A {Homo sapiens}
Length = 135
Score = 91.5 bits (227), Expect = 5e-25
Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 12/134 (8%)
Query: 9 IDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYV 68
+ + + AL++ K + + +K+D E++ I + E + +L +P RY
Sbjct: 4 LQPEAQRALQQL---KQKMVNYIQMKLDLERETIELVHT-EPTDVAQLPSRVPRDAARYH 59
Query: 69 VYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIM-YAGTKLALQQEAD------LTRVYE 121
+ + H + + FIY P + M Y+ K L + + + E
Sbjct: 60 FFLYKHTHEGDPLE-SVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIE 118
Query: 122 VRELEELTEEWLKS 135
+ + ELT E+L
Sbjct: 119 IGDGAELTAEFLDD 132
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding
proteins, cytoskeleton, structural protein/contractIle
protein complex; HET: ATP; 2.55A {Mus musculus} PDB:
2hd7_A
Length = 164
Score = 91.2 bits (226), Expect = 2e-24
Identities = 28/136 (20%), Positives = 57/136 (41%), Gaps = 12/136 (8%)
Query: 7 CDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPR 66
I D +AL+K + + L++D + + I + + E+ L +L +P R
Sbjct: 22 FPISRDAFQALEKL---SKKQLNYVQLEIDIKNETIILANT-ENTELRDLPKRIPKDSAR 77
Query: 67 YVVYSCRMEHGDGRVSYPMSFIYITPRD-AQMALQIMYAGTKLALQQEAD------LTRV 119
Y + + H + + FIY P + +++Y+ K L + + + R
Sbjct: 78 YHFFLYKHSHEGDYLE-SVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRK 136
Query: 120 YEVRELEELTEEWLKS 135
E+ +ELT ++L
Sbjct: 137 IEIDNGDELTADFLYD 152
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein,
developmental regulation, cellular remodeling,
cytoskeleton, morphology; NMR {Mus musculus}
Length = 166
Score = 90.9 bits (225), Expect = 2e-24
Identities = 28/136 (20%), Positives = 57/136 (41%), Gaps = 12/136 (8%)
Query: 7 CDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPR 66
I D +AL+K + + L++D + + I + + E+ L +L +P R
Sbjct: 27 FPISRDAFQALEKL---SKKQLNYVQLEIDIKNETIILANT-ENTELRDLPKRIPKDSAR 82
Query: 67 YVVYSCRMEHGDGRVSYPMSFIYITPRD-AQMALQIMYAGTKLALQQEAD------LTRV 119
Y + + H + + FIY P + +++Y+ K L + + + R
Sbjct: 83 YHFFLYKHSHEGDYLE-SVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRK 141
Query: 120 YEVRELEELTEEWLKS 135
E+ +ELT ++L
Sbjct: 142 IEIDNGDELTADFLYD 157
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin,
solution structure, hormone; NMR {Leishmania donovani}
PDB: 2kvk_A
Length = 144
Score = 81.6 bits (201), Expect = 7e-21
Identities = 20/128 (15%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 9 IDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLME-DVSLDELRDILPSHQPRY 67
+++ V+ A+ R +K++ +++ + + ++I + ++ E V+ +L++ + +P Y
Sbjct: 8 LEESVRGAIDDLRMKKSR---YVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCY 64
Query: 68 VVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVYEVRELEE 127
V + + + I P A+ ++MY+ ++ AL ++ + +
Sbjct: 65 VAFDFEYNDAGSKRE-KLILIQWIPDTARPREKMMYSASRDALSSVSEGYLPIQANDESG 123
Query: 128 LTEEWLKS 135
L E +
Sbjct: 124 LDAEEIIR 131
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A
{Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A
Length = 137
Score = 80.0 bits (197), Expect = 2e-20
Identities = 19/129 (14%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Query: 9 IDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLME-DVSLDELRDILPSHQPRY 67
+ DD + + + + + K++ + ++ + + + ++ + LP RY
Sbjct: 5 VSDDCVQKFNELKLGH--QHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRY 62
Query: 68 VVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVY-EVRELE 126
++ + G+ + ++FI P A + ++MY TK +++++ +V + +
Sbjct: 63 AIFDYEFQVDGGQRNK-ITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAA 121
Query: 127 ELTEEWLKS 135
E++E+ +
Sbjct: 122 EISEDAVSE 130
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A
{Schizosaccharomyces pombe}
Length = 137
Score = 78.5 bits (193), Expect = 7e-20
Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 9 IDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYV 68
+ + EA ++ + K S ++ K++ K I ++ D D LP RY
Sbjct: 8 VSPECLEAFQELKLGK--SLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEKDCRYA 65
Query: 69 VYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEE 127
+Y G+G + + FI +P A + +++Y+ +K L++ + + + E
Sbjct: 66 IYDFEFNLGEGVRNK-IIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSE 124
Query: 128 LTEEWLKS 135
+ E +
Sbjct: 125 VAYETVLE 132
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant
protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP:
d.109.1.2
Length = 139
Score = 76.6 bits (188), Expect = 5e-19
Identities = 22/129 (17%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 9 IDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLME-DVSLDELRDILPSHQPRY 67
+ DD K + + ++ ++ ++ K++ +++++ ++ + + + +E LP+ + RY
Sbjct: 10 VHDDCKLRFLELKAKR--THRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRY 67
Query: 68 VVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVY-EVRELE 126
+Y + + FI P A++ +++YA +K ++E D +V + +
Sbjct: 68 AIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 127
Query: 127 ELTEEWLKS 135
E+ + +S
Sbjct: 128 EMDLDVFRS 136
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A
{Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A
1qpv_A
Length = 143
Score = 74.3 bits (182), Expect = 4e-18
Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 4/129 (3%)
Query: 9 IDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYV 68
+ D+ A + K ++ ++ K I + + D S D + LP + Y
Sbjct: 8 VADESLTAFNDLKLGK--KYKFILFGLNDAKTEIVVKETSTDPSYDAFLEKLPENDCLYA 65
Query: 69 VYSCRMEH-GDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVY-EVRELE 126
+Y E G+ + F +P A + +++YA +K AL++ + + +
Sbjct: 66 IYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFS 125
Query: 127 ELTEEWLKS 135
E++ + +
Sbjct: 126 EVSYDSVLE 134
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein
binding; 2.10A {Plasmodium berghei}
Length = 148
Score = 69.4 bits (169), Expect = 4e-16
Identities = 20/138 (14%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 9 IDDDVKEALKKFRFRKAQSNAALILKVDREKQRIC------IDDLMEDVSLDELRDILPS 62
+ D+ + + + N +I K++ ++ + ++ D + +++ L +
Sbjct: 12 VSDECIYEFNRLKVKH--LNKYIIYKIENLEKIVVDVLEHDMELTSLDNIIMRIKNNLKN 69
Query: 63 HQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVY-- 120
+ RY++ + +G + + FI+ +P ++ +++YA +K +L ++ +
Sbjct: 70 TECRYIIADMPIPTPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKINGIFKSLE 129
Query: 121 EVRELEELTEEWLKSCLA 138
++ E EE L
Sbjct: 130 ITCDINEFEEELKAIILN 147
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin
binding, protein binding; NMR {Toxoplasma gondii}
Length = 139
Score = 61.7 bits (149), Expect = 2e-13
Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 16/125 (12%)
Query: 9 IDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYV 68
+D++ + + RK + ++ K++ K I ++ + + DE R LP++ R+
Sbjct: 28 VDENCVARFNELKIRK--TVKWIVFKIENTK--IVVEKDGKG-NADEFRGALPANDCRFG 82
Query: 69 VYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVYEVR--ELE 126
VY + F+ P +A + ++ YA +K AL ++ D + E+
Sbjct: 83 VY---------DCGNKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDGATAVALEAHEMG 133
Query: 127 ELTEE 131
+L
Sbjct: 134 DLAPL 138
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of
alpha-helices, structural protein; 1.60A {Mus musculus}
SCOP: d.109.1.2
Length = 142
Score = 51.9 bits (124), Expect = 1e-09
Identities = 28/139 (20%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 9 IDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDE------LRDILPS 62
+DVKE F +A++ +LK+ E +++ + E + +L
Sbjct: 9 ASEDVKEI-----FARARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLED 63
Query: 63 HQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVYE- 121
QP YV++ ++ G Y FI +P + + +++YA T+ L++E + +
Sbjct: 64 KQPCYVLFRLDSQNAQG---YEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDE 120
Query: 122 --VRELEELTEEWLKSCLA 138
E+++ K L
Sbjct: 121 VFGTVKEDVSLHGYKKYLL 139
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation,
cofilin-like, cytoskeleton, actin-binding, protein
tyrosine kinase-9; 1.70A {Homo sapiens}
Length = 134
Score = 48.8 bits (116), Expect = 2e-08
Identities = 24/136 (17%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 9 IDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDE------LRDILPS 62
+++KE F KA++ + ++KV E +++ + E V + + +L +
Sbjct: 6 ATEELKEF-----FAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPLLDA 60
Query: 63 HQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRV--- 119
QP Y++Y ++ G + F+ +P ++ + L+++YA T+ +++E +
Sbjct: 61 QQPCYLLYRLDSQNAQG---FEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDE 117
Query: 120 YEVRELEELTEEWLKS 135
++L+ +
Sbjct: 118 LFGTVKDDLSFAGYQK 133
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin
regulator, actin-binding protein; HET: TAR; 1.60A
{Plasmodium falciparum} PDB: 2xf1_A
Length = 124
Score = 43.5 bits (102), Expect = 1e-06
Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 18/126 (14%)
Query: 9 IDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPS---HQP 65
++D+ + RK + +I + + I I +L EL + Q
Sbjct: 9 VNDNCVTEFNNMKIRK--TCGWIIFVIQNCE--IIIHSKGASTTLTELVQSIDKNNEIQC 64
Query: 66 RYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVYEVREL 125
YVV+ + + F + ++ YA +K A+ ++ + V + +
Sbjct: 65 AYVVFDAVSK---------IHFFMYARESSNSRDRMTYASSKQAILKK--IEGVNVLTSV 113
Query: 126 EELTEE 131
E ++
Sbjct: 114 IESAQD 119
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 1e-04
Identities = 26/149 (17%), Positives = 46/149 (30%), Gaps = 43/149 (28%)
Query: 4 VKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSH 63
+K C+ + V E L+K ++ + + K RI + ELR +L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI------HSIQ-AELRRLL--K 239
Query: 64 QPRYV--------VYS----------CRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAG 105
Y V + C+ I +T R Q+ + A
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCK--------------ILLTTRFKQVTDFLSAAT 285
Query: 106 TKLALQQEADLTRVYEVRELEELTEEWLK 134
T +T E++ L ++L
Sbjct: 286 TTHISLDHHSMT--LTPDEVKSLLLKYLD 312
Score = 33.3 bits (75), Expect = 0.017
Identities = 27/153 (17%), Positives = 42/153 (27%), Gaps = 44/153 (28%)
Query: 8 DIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRY 67
D+ D K L K I+ L L S Q
Sbjct: 37 DVQDMPKSILSKEEIDH-------IIMSKDAVSG-----------TLRLFWTLLSKQEE- 77
Query: 68 VVYSCRMEHGDGRVSYP--MSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVYEVREL 125
+ +E R++Y MS I R M + MY + L + + Y V L
Sbjct: 78 -MVQKFVEEVL-RINYKFLMSPIKTEQRQPSM-MTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 126 EELTE--EWL------------------KSCLA 138
+ + + L K+ +A
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Score = 32.9 bits (74), Expect = 0.030
Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 22/96 (22%)
Query: 20 FRF--RK----------AQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRY 67
FRF +K + S + ++ K IC +D + ++ + D LP +
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 68 VVYSCRMEHGD---GRVSYPMSFIYITPRDAQMALQ 100
+ ++ D + I+ +A +Q
Sbjct: 560 I----CSKYTDLLRIALMAEDEAIFE---EAHKQVQ 588
Score = 28.7 bits (63), Expect = 0.77
Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 17/99 (17%)
Query: 50 DVSLDEL----RDILPSHQPRYVV-YSCR-MEHGDGRV--SYPMSFIYITPRDAQMALQI 101
D E +DIL + +V + C+ ++ + + I ++ L++
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 102 MYAGTKLALQQEADLTRVYE--VRELEELTEEWLKSCLA 138
L +QE + + V E+ + ++L S +
Sbjct: 68 F---WTLLSKQE----EMVQKFVEEVLRINYKFLMSPIK 99
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler
syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET:
FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A*
1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A*
3fjo_A* 1b1c_A*
Length = 618
Score = 32.7 bits (75), Expect = 0.024
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 10 DDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMED-----VSLDELRDILPSHQ 64
+ +E L+K + + V R I +++D +D L ++LP Q
Sbjct: 336 EPSEQELLRKMASSSGEGKELYLSWVVEA--RRHILAILQDCPSLRPPIDHLCELLPRLQ 393
Query: 65 PRYVVYS 71
RY YS
Sbjct: 394 ARY--YS 398
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA
recognition motif, vincu alpha-actinin, nucleus, RNA
binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E
Length = 284
Score = 31.1 bits (71), Expect = 0.080
Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 21/124 (16%)
Query: 18 KKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHG 77
++ R R + R +++I I L DV+ E+ D+L Y + C ++
Sbjct: 6 EEIRKRLEHTERQF-----RNRRKILIRGLPGDVTNQEVHDLLSD----YELKYCFVDKY 56
Query: 78 DGRVSYPMSFI-YITPRDAQMALQIM----YAGTKLALQQEADLTRVYEVREL-EELTEE 131
G +F+ + A+ A+ +L++Q + + V L LT++
Sbjct: 57 KG---T--AFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLC-VANLPPSLTQQ 110
Query: 132 WLKS 135
+
Sbjct: 111 QFEE 114
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD,
oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB:
3qft_A*
Length = 458
Score = 31.1 bits (71), Expect = 0.10
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 10 DDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMED-----VSLDELRDILPSHQ 64
+ +E L+K + + V R I +++D +D L ++LP Q
Sbjct: 176 EPSEQELLRKMASSSGEGKELYLSWVVEA--RRHILAILQDCPSLRPPIDHLCELLPRLQ 233
Query: 65 PRYVVYS 71
RY YS
Sbjct: 234 ARY--YS 238
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 109
Score = 29.8 bits (67), Expect = 0.12
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 37 REKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFI-YITPRDA 95
R+ I + + +E+ + + + D + +F+ Y + R A
Sbjct: 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAA 65
Query: 96 QMALQIMYAGT 106
MA + + G
Sbjct: 66 AMARRKLMPGR 76
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.17
Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 44/122 (36%)
Query: 21 RFRKAQSNAALILKVDREKQRIC--------IDDLMEDVSLDELRDILPSHQPRYVVYSC 72
R +SN+AL V ++ DD +ELRD+ Y Y
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-----FEELRDL-------YQTYHV 182
Query: 73 RMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVYEVRELEELTEEW 132
+ I + + L +L + D +V+ + L EW
Sbjct: 183 LVG----------DLI----KFSAETLS------ELI-RTTLDAEKVFT-QGLN--ILEW 218
Query: 133 LK 134
L+
Sbjct: 219 LE 220
Score = 30.4 bits (68), Expect = 0.21
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 10/47 (21%)
Query: 14 KEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDIL 60
AL +L + + +I I +L + +SL+E+ L
Sbjct: 1859 LRALDT---------VTNVLNFIKLQ-KIDIIELQKSLSLEEVEGHL 1895
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural
motif, flattened antiparallel BE barrel, flexible hinge
region, connecting domain; HET: FAD; 1.90A {Homo
sapiens} PDB: 2qtz_A*
Length = 539
Score = 30.1 bits (68), Expect = 0.21
Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 10 DDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMED-----VSLDELRDILPSHQ 64
D K L++ A C+ DL+ L L + LP Q
Sbjct: 235 DSAEKRRLQEL----CSKQGAADYSRFVRDACACLLDLLLAFPSCQPPLSLLLEHLPKLQ 290
Query: 65 PRYVVYSC 72
PR YSC
Sbjct: 291 PRP--YSC 296
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.52
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 14 KEALKKFRFR-K--AQSNA-ALILKVDRE 38
K+ALKK + K A +A AL +K E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450
reductase, diflavin reductase, FAD, FMN-binding,
electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces
cerevisiae} PDB: 2bn4_A* 2bf4_A*
Length = 682
Score = 28.6 bits (64), Expect = 0.71
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 17/71 (23%)
Query: 10 DDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMED---------VSLDELRDIL 60
+ DVKE L ++ +++ + I D ++ V + L + +
Sbjct: 371 NADVKEKLTLL----SKDKDQFAVEITSK--YFNIADALKYLSDGAKWDTVPMQFLVESV 424
Query: 61 PSHQPRYVVYS 71
P PRY YS
Sbjct: 425 PQMTPRY--YS 433
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain,
FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus
norvegicus} SCOP: b.43.4.1 c.25.1.4
Length = 435
Score = 28.1 bits (63), Expect = 1.0
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 13/67 (19%)
Query: 10 DDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMED-----VSLDELRDILPSHQ 64
++ K+ L + + + + + +++E+ + L L Q
Sbjct: 156 NEKEKQRLLVLSKGLQE------YEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQLSLLQ 209
Query: 65 PRYVVYS 71
PRY YS
Sbjct: 210 PRY--YS 214
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD
and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4;
2.15A {Bacillus megaterium} PDB: 4dqk_A*
Length = 393
Score = 27.6 bits (62), Expect = 1.2
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 14/67 (20%)
Query: 10 DDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMED-----VSLDELRDILPSHQ 64
K L+ ++A L +R+ + +L+E + E +LPS +
Sbjct: 118 CPPHKVELEALLEKQAYKEQVL-------AKRLTMLELLEKYPACEMKFSEFIALLPSIR 170
Query: 65 PRYVVYS 71
PRY YS
Sbjct: 171 PRY--YS 175
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 27.4 bits (60), Expect = 1.7
Identities = 4/27 (14%), Positives = 17/27 (62%)
Query: 10 DDDVKEALKKFRFRKAQSNAALILKVD 36
+ +VK A++++R+ + + +++ +
Sbjct: 193 EREVKNAMRRWRYEPGKPGSGIVVNIL 219
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 27.1 bits (60), Expect = 2.0
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 13/67 (19%)
Query: 10 DDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMED-----VSLDELRDILPSHQ 64
++ K+ L ++ + + +++E+ + L L Q
Sbjct: 377 NEKEKQRLLVL----SKGLQEYEEWKWGK--NPTMVEVLEEFPSIQMPATLLLTQLSLLQ 430
Query: 65 PRYVVYS 71
PRY YS
Sbjct: 431 PRY--YS 435
>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc
genomics, joint center for structural genomics, JCSG;
1.90A {Thermotoga maritima}
Length = 381
Score = 26.7 bits (60), Expect = 2.4
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 46 DLMEDVSLDELRDILPSHQPRY 67
L ++ + + LP +PRY
Sbjct: 231 SLTLEM-TEVTVEFLPEDKPRY 251
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain,
RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 103
Score = 26.1 bits (58), Expect = 2.4
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 46 DLMEDVSLDELRDILPSHQPRYVVYSCRM--EHGDGRVSYPMSFI-YITPRDAQMALQIM 102
+L DV+ + + P SC+M EH Y F+ + RDA AL M
Sbjct: 22 NLSRDVTEVLILQLFSQIGP---CKSCKMITEHTSND-PY--CFVEFYEHRDAAAALAAM 75
>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase,
metal-binding, queuosine biosynthesis, tRNA processing;
HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A*
1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A*
1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A*
1q65_A* 1q66_A* 1k4g_A* 1s38_A* ...
Length = 386
Score = 26.7 bits (60), Expect = 2.7
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 46 DLMEDVSLDELRDILPSHQPRY 67
D M V LD +LP +P Y
Sbjct: 238 DEMFRV-LDFSVPMLPDDKPHY 258
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia
coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Length = 90
Score = 25.4 bits (56), Expect = 3.1
Identities = 4/27 (14%), Positives = 17/27 (62%)
Query: 10 DDDVKEALKKFRFRKAQSNAALILKVD 36
+ +VK A++++R+ + + +++ +
Sbjct: 54 EREVKNAMRRWRYEPGKPGSGIVVNIL 80
>2qrt_A H-2KB, H-2 class I histocompatibility antigen K-B alpha chain,
beta-2 microglobulin, ovalbumin-derived...; MHC-I,
single chain MHC-I, glycoprotein; 1.80A {Mus musculus}
PDB: 2qrs_A 2qri_A
Length = 422
Score = 26.3 bits (58), Expect = 4.0
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 16/44 (36%)
Query: 46 DLMEDVSLDELRDILPSHQPRYVV-------------YSCRMEH 76
+L++D+ EL + P+ + Y+C + H
Sbjct: 365 ELIQDM---ELVETRPAGDGTFQKWASVVVPLGKEQYYTCHVYH 405
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation
factors PAIP1 and PAIP2, translation-RNA complex; 2.00A
{Homo sapiens} PDB: 1cvj_A*
Length = 213
Score = 25.7 bits (57), Expect = 4.9
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 46 DLMEDVSLDELRDILPSHQPRYVVYSCRM--EHGDGRVSYPMSFI-YITPRDAQMALQIM 102
DL DV+ L + P + S R+ + R S +++ + P DA+ AL M
Sbjct: 22 DLHPDVTEAMLYEKFSPAGP---ILSIRVCRDMITRR-SLGYAYVNFQQPADAERALDTM 77
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome
P450 reductase, FNR, modular protein, oxidoreductase;
HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1
c.25.1.4 PDB: 1ddi_A*
Length = 374
Score = 26.0 bits (58), Expect = 5.1
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 44 IDDLMED----VSLDELRDILPSHQPRYVVYS 71
I D++ + + L ++L PR YS
Sbjct: 135 IVDMVRFSPAQLDAEALINLLRPLTPRL--YS 164
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex,
AU-rich element, transcription/RNA complex; 1.80A {Homo
sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H
1d8z_A 1d9a_A 3hi9_A
Length = 167
Score = 25.6 bits (57), Expect = 5.3
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 44 IDDLMEDVSLDELRDILPSHQPRYVVYSCR-MEHGDGRVSYPMSFI-YITPRDAQMALQI 101
++ L ++++ +E R + S + SC+ + S F+ YI P+DA+ A+
Sbjct: 7 VNYLPQNMTQEEFRSLFGSIGE---IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 102 M 102
+
Sbjct: 64 L 64
>2h26_A CD1B antigen, T-cell surface glycoprotein CD1B; lipid, endogenous
ligand, phosphatidylcholine, MHC, antigen presentation,
immune system; HET: NAG FUC 6PL 6UL; 1.80A {Homo
sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3t8x_A* 1gzq_A*
1gzp_A* 1uqs_A* 3l9r_A*
Length = 286
Score = 25.6 bits (57), Expect = 6.8
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 16/44 (36%)
Query: 46 DLMEDVSLDELRDILPSH----QPRYVV---------YSCRMEH 76
+ +L DILP+ R + SCR++H
Sbjct: 225 QEQQGT---QLGDILPNANWTWYLRATLDVADGEAAGLSCRVKH 265
>3ov6_A Beta-2-microglobulin, T-cell surface glycoprotein cell surface
glycoprotein CD1B; MHC, immunoglobulin domain, immune
system, antigen presentat; HET: NAG D12 MK0; 2.50A {Homo
sapiens}
Length = 397
Score = 25.4 bits (56), Expect = 7.8
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 16/44 (36%)
Query: 46 DLMEDVSLDELRDILPSH----QPRYVV---------YSCRMEH 76
+ +L DILP+ R + SCR++H
Sbjct: 343 QEQQGT---QLGDILPNAQGTWYLRATLDVADGEAAGLSCRVKH 383
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.394
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,236,856
Number of extensions: 126413
Number of successful extensions: 495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 481
Number of HSP's successfully gapped: 69
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.8 bits)