RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12965
(139 letters)
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 137
Score = 144 bits (364), Expect = 5e-46
Identities = 66/133 (49%), Positives = 100/133 (75%)
Query: 6 VCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQP 65
VC++D ++KE L+KFRFRK +NAA+I+KVD+++Q + ++D ++++S +EL+ LP QP
Sbjct: 2 VCEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISPEELKLELPERQP 61
Query: 66 RYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVYEVREL 125
R+VVYS + H DGRVSYP+ FI+ +P + Q+MYAG+K L Q A+LT+V+E+R
Sbjct: 62 RFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTT 121
Query: 126 EELTEEWLKSCLA 138
++LTE WLK LA
Sbjct: 122 DDLTETWLKEKLA 134
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Acanthamoeba castellanii, actophorin [TaxId: 5755]}
Length = 134
Score = 88.0 bits (218), Expect = 5e-24
Identities = 18/129 (13%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
Query: 9 IDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLME-DVSLDELRDILPSHQPRY 67
+ DD + + + + + K++ + ++ + + + ++ + LP RY
Sbjct: 4 VSDDCVQKFNELKLGH--QHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRY 61
Query: 68 VVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQE-ADLTRVYEVRELE 126
++ + G+ + FI P A + ++MY TK +++++ + + +
Sbjct: 62 AIFDYEFQVDGGQRNKIT-FILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAA 120
Query: 127 ELTEEWLKS 135
E++E+ +
Sbjct: 121 EISEDAVSE 129
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 133
Score = 84.6 bits (209), Expect = 1e-22
Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 4/129 (3%)
Query: 9 IDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYV 68
+ D+ A + K ++ ++ K I + + D S D + LP + Y
Sbjct: 3 VADESLTAFNDLKLGK--KYKFILFGLNDAKTEIVVKETSTDPSYDAFLEKLPENDCLYA 60
Query: 69 VYSCRMEHGDGRVSYPMS-FIYITPRDAQMALQIMYAGTKLALQQE-ADLTRVYEVRELE 126
+Y E F +P A + +++YA +K AL++ ++ + +
Sbjct: 61 IYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFS 120
Query: 127 ELTEEWLKS 135
E++ + +
Sbjct: 121 EVSYDSVLE 129
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and
(Sus scrofa) [TaxId: 9606]}
Length = 174
Score = 82.4 bits (203), Expect = 2e-21
Identities = 27/149 (18%), Positives = 56/149 (37%), Gaps = 19/149 (12%)
Query: 9 IDDDVKEALKKFRFRKAQSNA-------ALILKVDREKQRICIDDLMEDV---------- 51
+ D+V + RK + A+I + +K+ I +++ E +
Sbjct: 16 VADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITD 75
Query: 52 SLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQ 111
+LP RY +Y E + R + F P A + +++YA +K A++
Sbjct: 76 PFKHFVGMLPEKDCRYALYDASFETKESRKE-ELMFFLWAPELAPLKSKMIYASSKDAIK 134
Query: 112 QEAD-LTRVYEVRELEELTEEWLKSCLAG 139
++ + + E+L + L G
Sbjct: 135 KKFQGIKHECQANGPEDLNRACIAEKLGG 163
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]}
Length = 124
Score = 78.8 bits (194), Expect = 2e-20
Identities = 21/121 (17%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 9 IDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDV-SLDELRDILPSHQPRY 67
+ DD K + + ++ ++ ++ K++ +++++ ++ + + + + +E LP+ + RY
Sbjct: 6 VHDDCKLRFLELKAKR--THRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRY 63
Query: 68 VVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRVY-EVRELE 126
+Y + + FI P A++ +++YA +K ++E D +V + +
Sbjct: 64 AIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 123
Query: 127 E 127
E
Sbjct: 124 E 124
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Human (Homo sapiens), non-muscle isoform [TaxId: 9606]}
Length = 166
Score = 77.0 bits (189), Expect = 2e-19
Identities = 25/143 (17%), Positives = 56/143 (39%), Gaps = 19/143 (13%)
Query: 9 IDDDVKEALKKFRFRKAQ-------SNAALILKVDREKQRICIDDLME----------DV 51
+ D V + + RK+ A++ + +K+ I +++ E D
Sbjct: 7 VSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDD 66
Query: 52 SLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQ 111
+LP RY +Y E + + + FI+ P A + +++YA +K A++
Sbjct: 67 PYATFVKMLPDKDCRYALYDATYETKESKKE-DLVFIFWAPESAPLKSKMIYASSKDAIK 125
Query: 112 QEAD-LTRVYEVRELEELTEEWL 133
++ + + EE+ +
Sbjct: 126 KKLTGIKHELQANCYEEVKDRCT 148
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 133
Score = 70.3 bits (172), Expect = 4e-17
Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 17/138 (12%)
Query: 9 IDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVS------LDELRDILPS 62
+DVKE + R + +LK+ E +++ + + +L
Sbjct: 3 ASEDVKEIFARAR-----NGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLED 57
Query: 63 HQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEADLTRV--- 119
QP YV++ ++ G Y FI +P + + +++YA T+ L++E +
Sbjct: 58 KQPCYVLFRLDSQNAQG---YEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDE 114
Query: 120 YEVRELEELTEEWLKSCL 137
E+++ K L
Sbjct: 115 VFGTVKEDVSLHGYKKYL 132
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein
abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 139
Score = 61.8 bits (150), Expect = 9e-14
Identities = 17/138 (12%), Positives = 39/138 (28%), Gaps = 8/138 (5%)
Query: 3 PVKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPS 62
P+ ++ K LI+ + +K+ S + +
Sbjct: 3 PIDYTTHSREIDAEYLKIVRGSDPDTTWLIISPNAKKEYEPES---TGSSFHDFLQLFDE 59
Query: 63 HQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEA--DLTRVY 120
+ +Y + D + I P A + + +A A+
Sbjct: 60 TKVQYGLARVSPPGSD---VEKIIIIGWCPDSAPLKTRASFAANFAAVANNLFKGYHVQV 116
Query: 121 EVRELEELTEEWLKSCLA 138
R+ ++L E L ++
Sbjct: 117 TARDEDDLDENELLMKIS 134
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 45.2 bits (107), Expect = 1e-07
Identities = 10/126 (7%), Positives = 32/126 (25%), Gaps = 7/126 (5%)
Query: 10 DDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVV 69
+ + A R + + I + + +
Sbjct: 6 KEACRAAYNLVRDDGSAVIWVTF---KYDGSTIVPGE--QGAEYQHFIQQCTDDVRLFAF 60
Query: 70 YSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEAD-LTRVYEVRELEEL 128
+ S + I + + K +++ + + + + +EL
Sbjct: 61 VRFTTGDAMSKRS-KFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKEL 119
Query: 129 TEEWLK 134
E+++K
Sbjct: 120 EEDFIK 125
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 29.7 bits (66), Expect = 0.040
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 34 KVDREKQRICIDDLMEDVSLDELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFIYITPR 93
VDR + + + ++ + + ++L+DI P Y Y
Sbjct: 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGF-CEYQDQE 61
Query: 94 DAQMALQIM 102
A A++ +
Sbjct: 62 TALSAMRNL 70
>d1chka_ d.2.1.7 (A:) Endochitosanase {Streptomyces sp., strain N174
[TaxId: 1931]}
Length = 238
Score = 25.9 bits (57), Expect = 1.4
Identities = 20/133 (15%), Positives = 37/133 (27%), Gaps = 21/133 (15%)
Query: 4 VKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDILPSH 63
V + K + A + ++ Q D + D ++ + +
Sbjct: 84 VNGSASHSGLGTPFTK-DWATAAKDTVF-----QQAQNDERDRVYFDPAVSQAKADGLRA 137
Query: 64 QPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQMALQIMYAGTKLALQQEAD-LTRVYEV 122
++ Y + HG G SF I R M A T E L +
Sbjct: 138 LGQFAYYDAIVMHGPGNDP--TSFGGI--RKTAMKK----ARTPAQGGDETTYLNGFLDA 189
Query: 123 RELEELTEEWLKS 135
R + + +
Sbjct: 190 R------KAAMLT 196
>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit
gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 159
Score = 25.9 bits (56), Expect = 1.5
Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 4/91 (4%)
Query: 1 SQPVKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMEDVSLDELRDIL 60
S + V D VK+A ++ D +KQ + D R
Sbjct: 22 SSKLVVFDTSLQVKKAFFALVTNGVRA----APLWDSKKQSFVGMLTITDFINILHRYYK 77
Query: 61 PSHQPRYVVYSCRMEHGDGRVSYPMSFIYIT 91
+ Y + ++E +
Sbjct: 78 SALVQIYELEEHKIETWREVYLQDSFKPLVC 108
>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 279
Score = 26.2 bits (57), Expect = 1.6
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 10 DDDVKEALKKFRFRKAQSNAALILKVDREKQRICIDDLMED-----VSLDELRDILPSHQ 64
+ +E L K + + V R I +++D +D L ++LP Q
Sbjct: 156 EPSEQEHLHKMASSSGEGKELYLSWVVEA--RRHILAILQDYPSLRPPIDHLCELLPRLQ 213
Query: 65 PRYVVYSCRMEHGDGRVS 82
RY + + V
Sbjct: 214 ARYYAIASSSKVHPNSVH 231
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 75
Score = 24.2 bits (53), Expect = 2.5
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 4 VKVCDIDDDVKEALKKFRFRKAQSNAALILKVDREKQRICID 45
VK C D +E L + +L +D + +D
Sbjct: 36 VKPCAGSLDDRERLLPY-------TGQCVLSIDLAAGEMRVD 70
>d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus
anthracis [TaxId: 1392]}
Length = 273
Score = 25.2 bits (54), Expect = 3.0
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 63 HQPRYVVYSCRMEHGDGRVSYPMS---FIY-ITPRDAQMALQIMYAGTKLALQQEADLTR 118
+ ++ V S FI + + L+ A L +++ + R
Sbjct: 194 QNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLPVEERLEGTGATVCLGIEKGCEFVR 253
Query: 119 VYEVRE 124
V++V+E
Sbjct: 254 VHDVKE 259
>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding
Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 121
Score = 24.4 bits (52), Expect = 3.9
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 69 VYSCRMEHGDGRVSYPMSFIYIT 91
Y RME G+ + +Y + +
Sbjct: 97 RYFFRMEKGNIKWNYKYDQLSVN 119
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 23.9 bits (51), Expect = 4.2
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 38 EKQRICIDDLMEDVSL-DELRDILPSHQPRYVVYSCRMEHGDGRVSYPMSFIYITPRDAQ 96
E + I I +L ++ + LR+ + + + ++ A+
Sbjct: 3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 62
Query: 97 MALQ 100
ALQ
Sbjct: 63 RALQ 66
>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli
[TaxId: 562]}
Length = 282
Score = 24.7 bits (53), Expect = 4.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 104 AGTKLALQQEADLTRVYEVRE 124
A +A Q A + RV++V+E
Sbjct: 241 ACAVIAAMQGAHIIRVHDVKE 261
>d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId:
562]}
Length = 316
Score = 24.3 bits (52), Expect = 7.1
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 6 VCDIDDDVKEALKKFRFRKAQSNAALILK 34
V D D A+K ++ + A +N +LIL
Sbjct: 14 VADTGDI--AAMKLYQPQDATTNPSLILN 40
>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus
aureus [TaxId: 1280]}
Length = 264
Score = 23.6 bits (50), Expect = 9.8
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 104 AGTKLALQQEADLTRVYEVRE 124
A T + + RV+ V
Sbjct: 224 ATTAYGIMKGVRAVRVHNVEL 244
>d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 270
Score = 23.7 bits (50), Expect = 9.9
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 104 AGTKLALQQEADLTRVYEVRE 124
+ LA A RV++VR
Sbjct: 235 VISALAALHGAWGVRVHDVRA 255
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.394
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 544,496
Number of extensions: 24037
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 33
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.5 bits)