BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12966
(741 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G1E|B Chain B, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 738
Score = 351 bits (900), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 188/437 (43%), Positives = 265/437 (60%), Gaps = 18/437 (4%)
Query: 90 EAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQL 149
+ Q+SPQ ++L+LR +++ + Q EDYPVD+YYLMDLS SM+DD + LG +L
Sbjct: 79 QVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKL 138
Query: 150 SASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLE-PC----AGCAAPYGYHNVMSLSQ 204
+ M+++TSN R+GFG+FVDK V PY+ + P LE PC C +GY +V++L+
Sbjct: 139 ATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTD 198
Query: 205 DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAG 264
+RF+ +VK +VS N D PEGGFDAIMQA VC E+IGWR+ A LLVF+TDA+ H A
Sbjct: 199 QVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIAL 258
Query: 265 DGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVY 324
DG+L GIV+PNDG CH+ + Y+ ST DYPS+ + K+ Q +INLIFAVT + +Y
Sbjct: 259 DGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLY 318
Query: 325 ERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKD 383
+ I G++ G L+ DSSNV+ L+ D Y KI S VE++ + +++++ CLN +
Sbjct: 319 QNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNE 378
Query: 384 GPSKPTAK-CDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQC 442
P K C GLK+G V F I+ +V CP + ++F I PVG ++L V + C
Sbjct: 379 --VIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKE---KSFTIKPVGFKDSLIVQVTFDC 433
Query: 443 ECPCEVDGHPSFVRNSPNC-SGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKAD 501
+C C+ P NS C +G GTF+CG+C C G +CEC E + C
Sbjct: 434 DCACQAQAEP----NSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPR 489
Query: 502 ANSTMECSGRGNCLCNQ 518
+ CS RG CLC Q
Sbjct: 490 EGQPV-CSQRGECLCGQ 505
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 446 CEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKADANST 505
CE D CSG G CG C CD G C C + ++S G
Sbjct: 521 CECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNG-------- 572
Query: 506 MECSGRGNCLC 516
+ CSGRG C C
Sbjct: 573 LLCSGRGKCEC 583
>pdb|3IJE|B Chain B, Crystal Structure Of The Complete Integrin Alhavbeta3
Ectodomain Plus An Alpha/beta Transmembrane Fragment
Length = 695
Score = 350 bits (899), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 188/437 (43%), Positives = 265/437 (60%), Gaps = 18/437 (4%)
Query: 90 EAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQL 149
+ Q+SPQ ++L+LR +++ + Q EDYPVD+YYLMDLS SM+DD + LG +L
Sbjct: 79 QVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKL 138
Query: 150 SASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLE-PC----AGCAAPYGYHNVMSLSQ 204
+ M+++TSN R+GFG+FVDK V PY+ + P LE PC C +GY +V++L+
Sbjct: 139 ATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTD 198
Query: 205 DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAG 264
+RF+ +VK +VS N D PEGGFDAIMQA VC E+IGWR+ A LLVF+TDA+ H A
Sbjct: 199 QVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIAL 258
Query: 265 DGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVY 324
DG+L GIV+PNDG CH+ + Y+ ST DYPS+ + K+ Q +INLIFAVT + +Y
Sbjct: 259 DGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLY 318
Query: 325 ERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKD 383
+ I G++ G L+ DSSNV+ L+ D Y KI S VE++ + +++++ CLN +
Sbjct: 319 QNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNE 378
Query: 384 GPSKPTAK-CDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQC 442
P K C GLK+G V F I+ +V CP + ++F I PVG ++L V + C
Sbjct: 379 --VIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKE---KSFTIKPVGFKDSLIVQVTFDC 433
Query: 443 ECPCEVDGHPSFVRNSPNC-SGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKAD 501
+C C+ P NS C +G GTF+CG+C C G +CEC E + C
Sbjct: 434 DCACQAQAEP----NSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPR 489
Query: 502 ANSTMECSGRGNCLCNQ 518
+ CS RG CLC Q
Sbjct: 490 EGQPV-CSQRGECLCGQ 505
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 446 CEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKADANST 505
CE D CSG G CG C CD G C C + ++S G
Sbjct: 521 CECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNG-------- 572
Query: 506 MECSGRGNCLC 516
+ CSGRG C C
Sbjct: 573 LLCSGRGKCEC 583
>pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1U8C|B Chain B, A Novel Adaptation Of The Integrin Psi Domain Revealed
From Its Crystal Structure
Length = 692
Score = 350 bits (899), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 188/437 (43%), Positives = 265/437 (60%), Gaps = 18/437 (4%)
Query: 90 EAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQL 149
+ Q+SPQ ++L+LR +++ + Q EDYPVD+YYLMDLS SM+DD + LG +L
Sbjct: 79 QVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKL 138
Query: 150 SASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLE-PC----AGCAAPYGYHNVMSLSQ 204
+ M+++TSN R+GFG+FVDK V PY+ + P LE PC C +GY +V++L+
Sbjct: 139 ATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTD 198
Query: 205 DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAG 264
+RF+ +VK +VS N D PEGGFDAIMQA VC E+IGWR+ A LLVF+TDA+ H A
Sbjct: 199 QVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIAL 258
Query: 265 DGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVY 324
DG+L GIV+PNDG CH+ + Y+ ST DYPS+ + K+ Q +INLIFAVT + +Y
Sbjct: 259 DGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLY 318
Query: 325 ERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKD 383
+ I G++ G L+ DSSNV+ L+ D Y KI S VE++ + +++++ CLN +
Sbjct: 319 QNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNE 378
Query: 384 GPSKPTAK-CDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQC 442
P K C GLK+G V F I+ +V CP + ++F I PVG ++L V + C
Sbjct: 379 --VIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKE---KSFTIKPVGFKDSLIVQVTFDC 433
Query: 443 ECPCEVDGHPSFVRNSPNC-SGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKAD 501
+C C+ P NS C +G GTF+CG+C C G +CEC E + C
Sbjct: 434 DCACQAQAEP----NSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPR 489
Query: 502 ANSTMECSGRGNCLCNQ 518
+ CS RG CLC Q
Sbjct: 490 EGQPV-CSQRGECLCGQ 505
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 71/238 (29%), Gaps = 72/238 (30%)
Query: 446 CEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKADANST 505
CE D CSG G CG C CD G C C + ++S G
Sbjct: 521 CECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNG-------- 572
Query: 506 MECSGRGNCLCNQKSLDXXXXXXXXXXXXTTECCVLDLNTVGACVASAIVKTAGLVQRVT 565
+ CSGRG C C G+CV ++
Sbjct: 573 LLCSGRGKCEC------------------------------GSCVCIQPGSYGDTCEKCP 602
Query: 566 VAPLMTPVYLLXXXXXXXXXXXXXXXCANVLKIAREDIPAGSA--RNARPVLEDVQEFKN 623
P C K RE + R R +E V+E K
Sbjct: 603 TCP---------------DACTFKKECVECKKFDREPYMTENTCNRYCRDEIESVKELK- 646
Query: 624 CIQCQVLQDRTIVRGGNEAKDENLCVYFDEDECKFEYVYWYDAQGKIHLRAQQERECP 681
+ KD C Y +ED+C + Y+ D+ GK L +E ECP
Sbjct: 647 ----------------DTGKDAVNCTYKNEDDCVVRFQYYEDSSGKSILYVVEEPECP 688
>pdb|3FCS|B Chain B, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|D Chain D, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 690
Score = 350 bits (899), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 188/437 (43%), Positives = 265/437 (60%), Gaps = 18/437 (4%)
Query: 90 EAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQL 149
+ Q+SPQ ++L+LR +++ + Q EDYPVD+YYLMDLS SM+DD + LG +L
Sbjct: 79 QVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKL 138
Query: 150 SASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLE-PC----AGCAAPYGYHNVMSLSQ 204
+ M+++TSN R+GFG+FVDK V PY+ + P LE PC C +GY +V++L+
Sbjct: 139 ATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTD 198
Query: 205 DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAG 264
+RF+ +VK +VS N D PEGGFDAIMQA VC E+IGWR+ A LLVF+TDA+ H A
Sbjct: 199 QVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIAL 258
Query: 265 DGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVY 324
DG+L GIV+PNDG CH+ + Y+ ST DYPS+ + K+ Q +INLIFAVT + +Y
Sbjct: 259 DGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLY 318
Query: 325 ERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKD 383
+ I G++ G L+ DSSNV+ L+ D Y KI S VE++ + +++++ CLN +
Sbjct: 319 QNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNE 378
Query: 384 GPSKPTAK-CDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQC 442
P K C GLK+G V F I+ +V CP + ++F I PVG ++L V + C
Sbjct: 379 --VIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKE---KSFTIKPVGFKDSLIVQVTFDC 433
Query: 443 ECPCEVDGHPSFVRNSPNC-SGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKAD 501
+C C+ P NS C +G GTF+CG+C C G +CEC E + C
Sbjct: 434 DCACQAQAEP----NSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPR 489
Query: 502 ANSTMECSGRGNCLCNQ 518
+ CS RG CLC Q
Sbjct: 490 EGQPV-CSQRGECLCGQ 505
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 446 CEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKADANST 505
CE D CSG G CG C CD G C C + ++S G
Sbjct: 521 CECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNG-------- 572
Query: 506 MECSGRGNCLC 516
+ CSGRG C C
Sbjct: 573 LLCSGRGKCEC 583
>pdb|4G1M|B Chain B, Re-Refinement Of Alpha V Beta 3 Structure
Length = 692
Score = 350 bits (898), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 188/437 (43%), Positives = 265/437 (60%), Gaps = 18/437 (4%)
Query: 90 EAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQL 149
+ Q+SPQ ++L+LR +++ + Q EDYPVD+YYLMDLS SM+DD + LG +L
Sbjct: 79 QVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKL 138
Query: 150 SASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLE-PC----AGCAAPYGYHNVMSLSQ 204
+ M+++TSN R+GFG+FVDK V PY+ + P LE PC C +GY +V++L+
Sbjct: 139 ATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTD 198
Query: 205 DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAG 264
+RF+ +VK +VS N D PEGGFDAIMQA VC E+IGWR+ A LLVF+TDA+ H A
Sbjct: 199 QVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIAL 258
Query: 265 DGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVY 324
DG+L GIV+PNDG CH+ + Y+ ST DYPS+ + K+ Q +INLIFAVT + +Y
Sbjct: 259 DGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLY 318
Query: 325 ERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKD 383
+ I G++ G L+ DSSNV+ L+ D Y KI S VE++ + +++++ CLN +
Sbjct: 319 QNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNE 378
Query: 384 GPSKPTAK-CDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQC 442
P K C GLK+G V F I+ +V CP + ++F I PVG ++L V + C
Sbjct: 379 --VIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKE---KSFTIKPVGFKDSLIVQVTFDC 433
Query: 443 ECPCEVDGHPSFVRNSPNC-SGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKAD 501
+C C+ P NS C +G GTF+CG+C C G +CEC E + C
Sbjct: 434 DCACQAQAEP----NSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPR 489
Query: 502 ANSTMECSGRGNCLCNQ 518
+ CS RG CLC Q
Sbjct: 490 EGQPV-CSQRGECLCGQ 505
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 446 CEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKADANST 505
CE D CSG G CG C CD G C C + ++S G
Sbjct: 521 CECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNG-------- 572
Query: 506 MECSGRGNCLC 516
+ CSGRG C C
Sbjct: 573 LLCSGRGKCEC 583
>pdb|3V4P|B Chain B, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4P|D Chain D, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4V|B Chain B, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
pdb|3V4V|D Chain D, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
Length = 503
Score = 342 bits (878), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 177/403 (43%), Positives = 249/403 (61%), Gaps = 19/403 (4%)
Query: 91 AVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLS 150
A Q++PQ V + LR E ++ V + +AE YPVDLYYLMDLS SM+DD +R+ LG L
Sbjct: 101 ATQLAPQRVRVTLRPGEPQQLQVRFLRAEGYPVDLYYLMDLSYSMKDDLERVRQLGHALL 160
Query: 151 ASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAG----CAAPYGYHNVMSLSQDT 206
+QEVT + R+GFGSFVDK V+P+VS VP L PC C +P+ +H+V+SL+ D
Sbjct: 161 VRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLERCQSPFSFHHVLSLTGDA 220
Query: 207 SRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDG 266
F +V +VSGNLD PEGGFDAI+QA +C+E+IGWR+ RLLVF++D FH AGDG
Sbjct: 221 QAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWRN-VSRLLVFTSDDTFHTAGDG 279
Query: 267 KLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYER 326
KLGGI P+DG CH+D NG+Y+ ST DYPS+ Q+ + +I IFAVT+ + VY+
Sbjct: 280 KLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAANIQPIFAVTSAALPVYQE 339
Query: 327 LKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKC---LNK 382
L I S+ G L+ DSSNVV L+ D YN +SS+V ++ +S V ++Y S+C +
Sbjct: 340 LSKLIPKSAVGELSEDSSNVVQLIMDAYNSLSSTVTLEHSSLPPGVHISYESQCEGPEKR 399
Query: 383 DGPSKPTAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQC 442
+G ++ +C+ +++ V F + ++ T C + +G E L V+L C
Sbjct: 400 EGKAEDRGQCNHVRINQTVTFWVSLQATHCLPE----PHLLRLRALGFSEELIVELHTLC 455
Query: 443 ECPCEVDGHPSFVRNSPNCS-GFGTFKCGLCECDQSHFGRRCE 484
+C C D P +P+CS G G +CG+C C GR CE
Sbjct: 456 DCNCS-DTQP----QAPHCSDGQGHLQCGVCSCAPGRLGRLCE 493
>pdb|3T3M|B Chain B, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3M|D Chain D, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|B Chain B, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|D Chain D, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
Length = 472
Score = 341 bits (874), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 177/403 (43%), Positives = 252/403 (62%), Gaps = 17/403 (4%)
Query: 90 EAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQL 149
+ Q+SPQ ++L+LR +++ + Q EDYPVD+YYLMDLS SM+DD + LG +L
Sbjct: 79 QVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKL 138
Query: 150 SASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLE-PC----AGCAAPYGYHNVMSLSQ 204
+ M+++TSN R+GFG+FVDK V PY+ + P LE PC C +GY +V++L+
Sbjct: 139 ATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTD 198
Query: 205 DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAG 264
+RF+ +VK +VS N D PEGGFDAIMQA VC E+IGWR+ A LLVF+TDA+ H A
Sbjct: 199 QVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIAL 258
Query: 265 DGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVY 324
DG+L GIV+PNDG CH+ + Y+ ST DYPS+ + K+ Q +INLIFAVT + +Y
Sbjct: 259 DGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLY 318
Query: 325 ERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKD 383
+ I G++ G L+ DSSNV+ L+ D Y KI S VE++ + +++++ CLN +
Sbjct: 319 QNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNE 378
Query: 384 GPSKPTAK-CDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQC 442
P K C GLK+G V F I+ +V CP + ++F I PVG ++L V + C
Sbjct: 379 --VIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKE---KSFTIKPVGFKDSLIVQVTFDC 433
Query: 443 ECPCEVDGHPSFVRNSPNC-SGFGTFKCGLCECDQSHFGRRCE 484
+C C+ P NS C +G GTF+CG+C C G +CE
Sbjct: 434 DCACQAQAEP----NSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
>pdb|3NID|B Chain B, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NID|D Chain D, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NIF|B Chain B, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIF|D Chain D, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|B Chain B, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|D Chain D, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
Length = 471
Score = 339 bits (869), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 251/402 (62%), Gaps = 17/402 (4%)
Query: 90 EAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQL 149
+ Q+SPQ ++L+LR +++ + Q EDYPVD+YYLMDLS SM+DD + LG +L
Sbjct: 79 QVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKL 138
Query: 150 SASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLE-PC----AGCAAPYGYHNVMSLSQ 204
+ M+++TSN R+GFG+FVDK V PY+ + P LE PC C +GY +V++L+
Sbjct: 139 ATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTD 198
Query: 205 DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAG 264
+RF+ +VK +VS N D PEGGFDAIMQA VC E+IGWR+ A LLVF+TDA+ H A
Sbjct: 199 QVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIAL 258
Query: 265 DGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVY 324
DG+L GIV+PNDG CH+ + Y+ ST DYPS+ + K+ Q +INLIFAVT + +Y
Sbjct: 259 DGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLY 318
Query: 325 ERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKD 383
+ I G++ G L+ DSSNV+ L+ D Y KI S VE++ + +++++ CLN +
Sbjct: 319 QNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNE 378
Query: 384 GPSKPTAK-CDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQC 442
P K C GLK+G V F I+ +V CP + ++F I PVG ++L V + C
Sbjct: 379 --VIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKE---KSFTIKPVGFKDSLIVQVTFDC 433
Query: 443 ECPCEVDGHPSFVRNSPNC-SGFGTFKCGLCECDQSHFGRRC 483
+C C+ P NS C +G GTF+CG+C C G +C
Sbjct: 434 DCACQAQAEP----NSHRCNNGNGTFECGVCRCGPGWLGSQC 471
>pdb|3K6S|B Chain B, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|D Chain D, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|F Chain F, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|H Chain H, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|B Chain B, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|D Chain D, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|F Chain F, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|H Chain H, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|B Chain B, Structure Of Integrin Alphax Beta2
pdb|3K72|D Chain D, Structure Of Integrin Alphax Beta2
Length = 687
Score = 338 bits (867), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 184/434 (42%), Positives = 260/434 (59%), Gaps = 22/434 (5%)
Query: 93 QISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSAS 152
Q+SPQ V+L LR +A V + +A+ YP+DLYYLMDLS SM DD + LG L +
Sbjct: 75 QLSPQKVTLYLRPGQAAAFNVTFRRAKGYPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRA 134
Query: 153 MQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAG----CAAPYGYHNVMSLSQDTSR 208
+ E+T + R+GFGSFVDK V+P+V+ P L PC C P+ + +V+ L+ ++++
Sbjct: 135 LNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPPFAFRHVLKLTNNSNQ 194
Query: 209 FSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKL 268
F +V +SGNLD PEGG DA+MQ C EEIGWR+ RLLVF+TD FH AGDGKL
Sbjct: 195 FQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRN-VTRLLVFATDDGFHFAGDGKL 253
Query: 269 GGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLK 328
G I+ PNDG CH++ N +Y S DYPS+ Q+ K+ +N+I IFAVT+ + YE+L
Sbjct: 254 GAILTPNDGRCHLEDN-LYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLT 312
Query: 329 THIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNK-DGPS 386
I S+ G L+ DSSNVV L+K+ YNK+SS V + + +KVTY S C N +
Sbjct: 313 EIIPKSAVGELSEDSSNVVQLIKNAYNKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRN 372
Query: 387 KPTAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPC 446
+P CDG+++ + F++ + T C Q+F I +G + + V + QCEC C
Sbjct: 373 QPRGDCDGVQINVPITFQVKVTATECIQE-----QSFVIRALGFTDIVTVQVLPQCECRC 427
Query: 447 EVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAE--SSQGITSTGCKADANS 504
R+ C G G +CG+C CD + G+ CEC + SSQ + + C+ D NS
Sbjct: 428 RDQS-----RDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGS-CRKDNNS 481
Query: 505 TMECSGRGNCLCNQ 518
+ CSG G+C+C Q
Sbjct: 482 II-CSGLGDCVCGQ 494
>pdb|2VC2|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist L-739758
pdb|2VDK|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDL|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDM|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Tirofiban
pdb|2VDN|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Eptifibatide
pdb|2VDO|B Chain B, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide, Hhlggakqagdv
pdb|2VDP|B Chain B, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide,Lggakqagdv
pdb|2VDQ|B Chain B, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Hhlggakqrgdv
pdb|2VDR|B Chain B, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Lggakqrgdv
pdb|3FCU|B Chain B, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3FCU|D Chain D, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3FCU|F Chain F, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
Length = 461
Score = 332 bits (851), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 173/391 (44%), Positives = 247/391 (63%), Gaps = 17/391 (4%)
Query: 90 EAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQL 149
+ Q+SPQ ++L+LR +++ + Q EDYPVD+YYLMDLS SM+DD + LG +L
Sbjct: 79 QVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKL 138
Query: 150 SASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLE-PC----AGCAAPYGYHNVMSLSQ 204
+ M+++TSN R+GFG+FVDK V PY+ + P LE PC C +GY +V++L+
Sbjct: 139 ATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTD 198
Query: 205 DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAG 264
+RF+ +VK +VS N D PEGGFDAIMQA VC E+IGWR+ A LLVF+TDA+ H A
Sbjct: 199 QVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIAL 258
Query: 265 DGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVY 324
DG+L GIV+PNDG CH+ + Y+ ST DYPS+ + K+ Q +INLIFAVT + +Y
Sbjct: 259 DGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLY 318
Query: 325 ERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKD 383
+ I G++ G L+ DSSNV+ L+ D Y KI S VE++ + +++++ CLN +
Sbjct: 319 QNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNE 378
Query: 384 GPSKPTAK-CDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQC 442
P K C GLK+G V F I+ +V CP + ++F I PVG ++L V + C
Sbjct: 379 --VIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKE---KSFTIKPVGFKDSLIVQVTFDC 433
Query: 443 ECPCEVDGHPSFVRNSPNC-SGFGTFKCGLC 472
+C C+ P NS C +G GTF+CG+C
Sbjct: 434 DCACQAQAEP----NSHRCNNGNGTFECGVC 460
>pdb|3VI3|B Chain B, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI3|D Chain D, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI4|B Chain B, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
pdb|3VI4|D Chain D, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
Length = 454
Score = 331 bits (848), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/357 (48%), Positives = 224/357 (62%), Gaps = 10/357 (2%)
Query: 93 QISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSAS 152
QI PQ + L+LR E + + +AEDYP+DLYYLMDLS SM+DD + + +LG L
Sbjct: 93 QIQPQQLVLRLRSGEPQTFTLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNE 152
Query: 153 MQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCA---GCAAPYGYHNVMSLSQDTSRF 209
M+ +TS+FR+GFGSFV+K VMPY+S P L PC C P+ Y NV+SL+ F
Sbjct: 153 MRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTTPFSYKNVLSLTNKGEVF 212
Query: 210 SAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLG 269
+ V +SGNLD PEGGFDAIMQ VC IGWR+ RLLVFSTDA FH AGDGKLG
Sbjct: 213 NELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN-VTRLLVFSTDAGFHFAGDGKLG 271
Query: 270 GIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKT 329
GIV PNDG CH++ N MYT S DYPSI+ + K+ +N+I IFAVT E VY+ LK
Sbjct: 272 GIVLPNDGQCHLENN-MYTMSHYYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKN 330
Query: 330 HIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNK-DGPSK 387
I S+ GTL+ +SSNV+ L+ D YN +SS V +++ S V ++Y S C N +G +
Sbjct: 331 LIPKSAVGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGVTISYKSYCKNGVNGTGE 390
Query: 388 PTAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCEC 444
KC + +G V FEI I CP S+ +F I P+G E + V L+ CEC
Sbjct: 391 NGRKCSNISIGDEVQFEISITSNKCPKKDSD---SFKIRPLGFTEEVEVILQYICEC 444
>pdb|1TYE|B Chain B, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
pdb|1TYE|D Chain D, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
pdb|1TYE|F Chain F, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
Length = 440
Score = 317 bits (812), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 162/365 (44%), Positives = 233/365 (63%), Gaps = 12/365 (3%)
Query: 90 EAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQL 149
+ Q+SPQ ++L+LR +++ + Q EDYPVD+YYLMDLS SM+DD + LG +L
Sbjct: 79 QVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKL 138
Query: 150 SASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLE-PC----AGCAAPYGYHNVMSLSQ 204
+ M+++TSN R+GFG+FVDK V PY+ + P LE PC C +GY +V++L+
Sbjct: 139 ATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTD 198
Query: 205 DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAG 264
+RF+ +VK +VS N D PEGGFDAIMQA VC E+IGWR+ A LLVF+TDA+ H A
Sbjct: 199 QVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIAL 258
Query: 265 DGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVY 324
DG+L GIV+PNDG CH+ + Y+ ST DYPS+ + K+ Q +INLIFAVT + +Y
Sbjct: 259 DGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLY 318
Query: 325 ERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKD 383
+ I G++ G L+ DSSNV+ L+ D Y KI S VE++ + +++++ CLN +
Sbjct: 319 QNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNE 378
Query: 384 GPSKPTAK-CDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQC 442
P K C GLK+G V F I+ +V CP + ++F I PVG ++L V + C
Sbjct: 379 --VIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKE---KSFTIKPVGFKDSLIVQVTFDC 433
Query: 443 ECPCE 447
+C C+
Sbjct: 434 DCACQ 438
>pdb|2IUE|A Chain A, Pactolus I-Domain: Functional Switching Of The Rossmann
Fold
Length = 212
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 128/238 (53%), Gaps = 26/238 (10%)
Query: 120 DYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMV 179
D VDLY+LM LS S + + LG L ++ E++ + R+GFGS V+
Sbjct: 1 DNSVDLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNMT-------- 52
Query: 180 PKNLLEPCAGCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCK 239
+ +++ L+ D+S+F +++ VSG L P+G DA++Q +C
Sbjct: 53 ----------------FQHILKLTADSSQFQRELRKQLVSGKLATPKGQLDAVVQVAICL 96
Query: 240 EEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSIS 299
EIGWR+ R LV TD +FH A D LG +DG CH+D +GMY DY S+
Sbjct: 97 GEIGWRN-GTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLD-DGMYRSRGEPDYQSVV 154
Query: 300 QINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKI 357
Q+ K+ +N+I IF V + + YE+L T I + G L++DSSNV L+++ Y+K+
Sbjct: 155 QLASKLAENNIQPIFVVPSRMVKTYEKLTTFIPKLTIGELSDDSSNVAQLIRNAYSKL 212
>pdb|2P26|A Chain A, Structure Of The Phe2 And Phe3 Fragments Of The Integrin
Beta2 Subunit
Length = 280
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 356 KISSSVEMKDTS-SSAVKVTYHSKCLNK-DGPSKPTAKCDGLKVGTVVHFEIDIEVTACP 413
K+SS V + + +KVTY S C N ++P CDG+++ + F++ + T C
Sbjct: 101 KLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECI 160
Query: 414 ANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCE 473
Q+F I +G + + V + QCEC C R+ C G G +CG+C
Sbjct: 161 QE-----QSFVIRALGFTDIVTVQVLPQCECRCRDQS-----RDRSLCHGKGFLECGICR 210
Query: 474 CDQSHFGRRCECDAE--SSQGITSTGCKADANSTMECSGRGNCLCNQ 518
CD + G+ CEC + SSQ + + C+ D NS + CSG G+C+C Q
Sbjct: 211 CDTGYIGKNCECQTQGRSSQELEGS-CRKDNNSII-CSGLGDCVCGQ 255
>pdb|2P28|B Chain B, Structure Of The Phe2 And Phe3 Fragments Of The Integrin
Beta2 Subunit
Length = 217
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 356 KISSSVEMKDTS-SSAVKVTYHSKCLNK-DGPSKPTAKCDGLKVGTVVHFEIDIEVTACP 413
K+SS V + + +KVTY S C N ++P CDG+++ + F++ + T C
Sbjct: 1 KLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECI 60
Query: 414 ANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCE 473
Q+F I +G + + V + QCEC C R+ C G G +CG+C
Sbjct: 61 QE-----QSFVIRALGFTDIVTVQVLPQCECRCRDQS-----RDRSLCHGKGFLECGICR 110
Query: 474 CDQSHFGRRCECDAE--SSQGITSTGCKADANSTMECSGRGNCLCNQ 518
CD + G+ CEC + SSQ + + C+ D NS + CSG G+C+C Q
Sbjct: 111 CDTGYIGKNCECQTQGRSSQELEGS-CRKDNNSII-CSGLGDCVCGQ 155
>pdb|1YUK|B Chain B, The Crystal Structure Of The PsiHYBRID DOMAIN I-Egf1
Segment From The Human Integrin Beta2 At 1.8 Resolution
Length = 120
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 370 AVKVTYHSKCLNK-DGPSKPTAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPV 428
+KVTY S C N ++P CDG+++ + F++ + T C Q+F I +
Sbjct: 13 TLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQE-----QSFVIRAL 67
Query: 429 GIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCE 484
G + + V + QCEC C R+ C G G +CG+C CD + G+ CE
Sbjct: 68 GFTDIVTVQVLPQCECRCRDQS-----RDRSLCHGKGFLECGICRCDTGYIGKNCE 118
>pdb|2KV9|B Chain B, Integrin Beta3 Subunit In A Disulfide Linked
Alphaiib-Beta3 Cytosolic Domain
Length = 75
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 707 LWKILTSIHDRREFAKFEKERMLAKWDTKLNSL 739
+WK+L +IHDR+EFAKFE+ER AKWDT N L
Sbjct: 27 IWKLLITIHDRKEFAKFEEERARAKWDTANNPL 59
>pdb|2KNC|B Chain B, Platelet Integrin Alfaiib-Beta3 Transmembrane-Cytoplasmic
Heterocomplex
Length = 79
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 708 WKILTSIHDRREFAKFEKERMLAKWDTKLNSL 739
WK+L +IHDR+EFAKFE+ER AKWDT N L
Sbjct: 32 WKLLITIHDRKEFAKFEEERARAKWDTANNPL 63
>pdb|3G9W|C Chain C, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
pdb|3G9W|D Chain D, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
Length = 52
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 709 KILTSIHDRREFAKFEKERMLAKWDTKLNSL 739
K+L IHDRREFAKFEKE+M AKWDT+ N +
Sbjct: 3 KLLMIIHDRREFAKFEKEKMNAKWDTQENPI 33
>pdb|1S4X|A Chain A, Nmr Structure Of The Integrin B3 Cytoplasmic Domain In Dpc
Micelles
Length = 67
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 709 KILTSIHDRREFAKFEKERMLAKWDTKLNSL 739
K+L +IHDR+EFAKFE+ER AKWDT N L
Sbjct: 21 KLLITIHDRKEFAKFEEERARAKWDTANNPL 51
>pdb|2LJE|A Chain A, Biphosphorylated (747py, 759py) Beta3 Integrin Cytoplasmic
Tail Under Membrane Mimetic Conditions
Length = 67
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 709 KILTSIHDRREFAKFEKERMLAKWDTKLNSL 739
K+L +IHDR+EFAKFE+ER AKWDT N L
Sbjct: 21 KLLITIHDRKEFAKFEEERARAKWDTANNPL 51
>pdb|2LJD|A Chain A, Monophosphorylated (747py) Beta3 Integrin Cytoplasmic Tail
Under Membrane Mimetic Conditions
pdb|2LJF|A Chain A, Monophosphorylated (747py) Beta3 Integrin Cytoplasmic Tail
Under Aqueous Conditions
Length = 67
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 709 KILTSIHDRREFAKFEKERMLAKWDTKLNSL 739
K+L +IHDR+EFAKFE+ER AKWDT N L
Sbjct: 21 KLLITIHDRKEFAKFEEERARAKWDTANNPL 51
>pdb|1M8O|B Chain B, Platelet Integrin Alfaiib-Beta3 Cytoplasmic Domain
Length = 47
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 709 KILTSIHDRREFAKFEKERMLAKWDTKLNSL 739
K+L +IHDR+EFAKFE+ER AKWDT N L
Sbjct: 1 KLLITIHDRKEFAKFEEERARAKWDTANNPL 31
>pdb|2L91|A Chain A, Structure Of The Integrin Beta3 (A711p,K716a)
Transmembrane Segment
Length = 43
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 679 ECPPHVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREF 720
E P IL ++L V+GAI+LIGLA L +W +L +IHDR+EF
Sbjct: 2 ESPKGPDILVVLLSVMGAILLIGLAPLLIWALLITIHDRKEF 43
>pdb|1KUP|B Chain B, Solution Structure Of The Membrane Proximal Regions Of
Alpha-Iib And Beta-3 Integrins
pdb|1KUZ|B Chain B, Solution Structure Of The Membrane Proximal Regions Of
Alpha-Iib And Beta-3 Integrins
Length = 25
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/25 (72%), Positives = 22/25 (88%)
Query: 709 KILTSIHDRREFAKFEKERMLAKWD 733
K+L +IHDR+EFAKFE+ER AKWD
Sbjct: 1 KLLITIHDRKEFAKFEEERARAKWD 25
>pdb|2H7D|B Chain B, Solution Structure Of The Talin F3 Domain In Complex With
A Chimeric Beta3 Integrin-Pip Kinase Peptide
pdb|2H7E|B Chain B, Solution Structure Of The Talin F3 Domain In Complex With
A Chimeric Beta3 Integrin-Pip Kinase Peptide- Minimized
Average Structure
Length = 34
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 709 KILTSIHDRREFAKFEKERMLAKW 732
K+L +IHDR+EFAKFE+ER AKW
Sbjct: 1 KLLITIHDRKEFAKFEEERARAKW 24
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 715 HDRREFAKFEKE 726
HDRREFAKFEKE
Sbjct: 379 HDRREFAKFEKE 390
>pdb|2RMZ|A Chain A, Bicelle-Embedded Integrin Beta3 Transmembrane Segment
pdb|2RN0|A Chain A, Micelle-Embedded Integrin Beta3 Transmembrane Segment
pdb|2K9J|B Chain B, Integrin Alphaiib-Beta3 Transmembrane Complex
Length = 43
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 679 ECPPHVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREF 720
E P IL ++L V+GAI+LIGLA L +WK+L +IHDR+EF
Sbjct: 2 ESPKGPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEF 43
>pdb|2C4I|A Chain A, Crystal Structure Of Engineered Avidin
Length = 271
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 267 KLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLI---FAVTAEQIGV 323
K GG G C +DRNG T M + ++S+N I + T I +
Sbjct: 134 KSGGSTTVFTGQCFIDRNGKEVLKT-----------MWLLRSSVNDIGDDWKATRVGINI 182
Query: 324 YERLKTHIEGSSSGT 338
+ RL+T EG S G+
Sbjct: 183 FTRLRTQKEGGSGGS 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,083,251
Number of Sequences: 62578
Number of extensions: 785153
Number of successful extensions: 1834
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1695
Number of HSP's gapped (non-prelim): 66
length of query: 741
length of database: 14,973,337
effective HSP length: 106
effective length of query: 635
effective length of database: 8,340,069
effective search space: 5295943815
effective search space used: 5295943815
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)