Query psy12966
Match_columns 741
No_of_seqs 293 out of 1485
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 15:40:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1226|consensus 100.0 1E-194 2E-199 1624.5 52.1 687 2-741 38-767 (783)
2 smart00187 INB Integrin beta s 100.0 2E-131 4E-136 1073.6 41.0 409 2-444 7-423 (423)
3 PF00362 Integrin_beta: Integr 100.0 1E-124 3E-129 1040.0 29.4 410 2-444 7-426 (426)
4 KOG1226|consensus 99.7 1.1E-16 2.5E-21 183.1 16.9 114 456-593 511-642 (783)
5 PF08725 Integrin_b_cyt: Integ 99.4 6.9E-14 1.5E-18 109.8 1.8 33 709-741 1-33 (47)
6 KOG1225|consensus 99.4 6E-13 1.3E-17 150.8 9.0 110 458-609 253-364 (525)
7 PF07965 Integrin_B_tail: Inte 99.3 7.7E-13 1.7E-17 117.5 4.8 68 618-685 1-87 (87)
8 KOG1225|consensus 99.3 7.1E-12 1.5E-16 142.2 8.5 118 468-625 232-352 (525)
9 smart00327 VWA von Willebrand 99.2 7.7E-10 1.7E-14 106.7 15.8 153 122-333 1-160 (177)
10 cd01450 vWFA_subfamily_ECM Von 99.0 1.1E-08 2.3E-13 97.6 15.4 132 123-316 1-139 (161)
11 TIGR03436 acidobact_VWFA VWFA- 99.0 4E-08 8.7E-13 105.2 20.2 207 91-364 24-261 (296)
12 PF13519 VWA_2: von Willebrand 99.0 5.9E-09 1.3E-13 100.1 12.4 161 124-351 1-170 (172)
13 cd01475 vWA_Matrilin VWA_Matri 98.9 1.1E-08 2.4E-13 105.4 14.5 149 121-331 1-155 (224)
14 cd01480 vWA_collagen_alpha_1-V 98.9 1.1E-08 2.3E-13 102.4 13.8 135 122-318 2-148 (186)
15 cd01472 vWA_collagen von Wille 98.9 3.5E-08 7.7E-13 96.2 15.5 106 123-259 1-114 (164)
16 cd01469 vWA_integrins_alpha_su 98.9 3.3E-08 7.2E-13 98.3 14.7 111 123-261 1-116 (177)
17 cd00198 vWFA Von Willebrand fa 98.9 5.6E-08 1.2E-12 91.0 14.7 148 123-330 1-154 (161)
18 cd01482 vWA_collagen_alphaI-XI 98.8 4.1E-08 9E-13 96.0 13.6 132 123-317 1-137 (164)
19 cd01453 vWA_transcription_fact 98.8 1.6E-07 3.4E-12 94.4 16.5 163 123-350 4-175 (183)
20 cd01471 vWA_micronemal_protein 98.8 1.2E-07 2.7E-12 94.3 15.6 110 123-260 1-120 (186)
21 cd01474 vWA_ATR ATR (Anthrax T 98.8 2.1E-07 4.5E-12 92.9 17.1 168 121-352 3-176 (185)
22 PF00092 VWA: von Willebrand f 98.8 1.1E-07 2.3E-12 92.4 14.6 113 124-262 1-117 (178)
23 cd01476 VWA_integrin_invertebr 98.7 1.7E-07 3.7E-12 90.9 13.5 109 123-259 1-114 (163)
24 PTZ00441 sporozoite surface pr 98.7 2.1E-07 4.6E-12 106.8 15.1 202 97-362 16-235 (576)
25 cd01451 vWA_Magnesium_chelatas 98.6 1.1E-06 2.3E-11 87.4 16.1 169 125-351 3-177 (178)
26 cd01477 vWA_F09G8-8_type VWA F 98.5 6.4E-07 1.4E-11 90.9 12.1 141 119-317 16-168 (193)
27 cd01481 vWA_collagen_alpha3-VI 98.5 1.1E-06 2.4E-11 86.7 11.9 145 124-329 2-151 (165)
28 cd01473 vWA_CTRP CTRP for CS 98.5 4.1E-06 8.9E-11 84.8 15.3 172 123-352 1-185 (192)
29 cd01467 vWA_BatA_type VWA BatA 98.4 4E-06 8.6E-11 82.6 14.6 107 122-261 2-115 (180)
30 cd01465 vWA_subgroup VWA subgr 98.2 2E-05 4.4E-10 76.5 12.9 108 123-261 1-109 (170)
31 cd01470 vWA_complement_factors 98.2 9.9E-06 2.1E-10 81.7 10.5 116 123-261 1-125 (198)
32 cd01463 vWA_VGCC_like VWA Volt 98.2 9.3E-06 2E-10 81.5 9.7 121 119-259 10-134 (190)
33 cd01461 vWA_interalpha_trypsin 98.1 5E-05 1.1E-09 73.7 13.0 107 122-259 2-110 (171)
34 PRK13685 hypothetical protein; 98.0 0.00013 2.7E-09 79.9 15.5 111 119-261 85-206 (326)
35 cd01464 vWA_subfamily VWA subf 97.9 4.3E-05 9.3E-10 75.6 8.7 49 122-170 3-55 (176)
36 cd01454 vWA_norD_type norD typ 97.9 0.00018 3.9E-09 71.0 13.1 112 125-262 3-117 (174)
37 PRK13406 bchD magnesium chelat 97.9 0.00036 7.9E-09 82.0 17.1 180 122-353 401-582 (584)
38 cd01452 VWA_26S_proteasome_sub 97.9 0.00023 4.9E-09 72.2 13.3 131 125-319 6-146 (187)
39 cd01466 vWA_C3HC4_type VWA C3H 97.8 8.4E-05 1.8E-09 72.3 9.3 107 123-259 1-109 (155)
40 cd01456 vWA_ywmD_type VWA ywmD 97.7 0.00076 1.6E-08 68.5 15.3 118 119-259 17-145 (206)
41 COG1240 ChlD Mg-chelatase subu 97.7 0.00064 1.4E-08 71.5 14.8 156 120-336 76-242 (261)
42 PF11265 Med25_VWA: Mediator c 97.7 0.0012 2.5E-08 68.7 16.0 157 122-319 13-187 (226)
43 cd01455 vWA_F11C1-5a_type Von 97.7 0.00099 2.1E-08 67.7 14.9 107 125-260 3-123 (191)
44 TIGR00868 hCaCC calcium-activa 97.7 0.00087 1.9E-08 81.4 16.8 53 116-170 298-352 (863)
45 TIGR02442 Cob-chelat-sub cobal 97.6 0.0007 1.5E-08 80.5 14.1 157 120-334 463-628 (633)
46 cd01462 VWA_YIEM_type VWA YIEM 97.5 0.00038 8.3E-09 66.9 9.1 103 124-259 2-105 (152)
47 PF13768 VWA_3: von Willebrand 97.5 0.0002 4.3E-09 69.1 6.8 105 124-260 2-108 (155)
48 cd01460 vWA_midasin VWA_Midasi 97.5 0.0014 3E-08 70.0 12.7 138 116-319 54-204 (266)
49 PF07974 EGF_2: EGF-like domai 97.4 9.5E-05 2.1E-09 53.9 2.6 25 459-483 6-32 (32)
50 TIGR02031 BchD-ChlD magnesium 97.4 0.0023 5E-08 75.5 15.2 168 122-336 407-578 (589)
51 TIGR03788 marine_srt_targ mari 97.4 0.0076 1.6E-07 71.3 19.4 219 110-407 253-485 (596)
52 KOG0994|consensus 97.1 0.0013 2.8E-08 79.4 8.7 57 429-487 893-952 (1758)
53 cd01458 vWA_ku Ku70/Ku80 N-ter 97.1 0.0042 9E-08 63.9 11.0 147 125-317 4-170 (218)
54 cd01457 vWA_ORF176_type VWA OR 96.8 0.0061 1.3E-07 61.7 9.1 108 122-261 2-120 (199)
55 PF07974 EGF_2: EGF-like domai 96.5 0.0015 3.3E-08 47.6 2.1 24 506-532 6-31 (32)
56 KOG4289|consensus 96.5 0.0017 3.6E-08 79.8 3.2 70 471-559 1223-1308(2531)
57 KOG0994|consensus 96.4 0.01 2.3E-07 72.0 8.9 39 443-490 764-803 (1758)
58 PLN00162 transport protein sec 96.2 0.17 3.6E-06 61.9 18.2 194 120-325 122-359 (761)
59 TIGR01651 CobT cobaltochelatas 96.1 0.013 2.8E-07 68.3 7.5 67 100-167 371-439 (600)
60 KOG1219|consensus 96.1 0.0097 2.1E-07 76.3 6.7 82 506-608 3870-3973(4289)
61 KOG1219|consensus 95.6 0.012 2.7E-07 75.4 5.0 85 460-563 3871-3974(4289)
62 PF11775 CobT_C: Cobalamin bio 95.5 0.068 1.5E-06 55.4 9.0 46 123-168 13-60 (219)
63 cd01478 Sec23-like Sec23-like: 95.5 0.16 3.5E-06 54.4 12.2 193 122-325 3-238 (267)
64 COG2425 Uncharacterized protei 95.1 0.053 1.2E-06 61.6 7.4 142 123-331 273-419 (437)
65 PF05762 VWA_CoxE: VWA domain 95.0 0.051 1.1E-06 56.4 6.8 61 103-170 38-99 (222)
66 PF10138 vWA-TerF-like: vWA fo 94.9 0.16 3.5E-06 52.2 9.8 138 125-329 4-154 (200)
67 KOG4260|consensus 94.9 0.019 4.1E-07 60.6 3.0 45 474-539 132-184 (350)
68 cd01479 Sec24-like Sec24-like: 94.0 0.6 1.3E-05 49.3 12.0 192 122-333 3-213 (244)
69 COG4245 TerY Uncharacterized p 93.9 0.26 5.7E-06 50.0 8.4 54 123-176 4-63 (207)
70 cd01468 trunk_domain trunk dom 93.5 0.99 2.1E-05 47.3 12.6 184 122-324 3-205 (239)
71 PF09967 DUF2201: VWA-like dom 93.2 0.44 9.5E-06 45.3 8.5 93 125-260 1-94 (126)
72 KOG4289|consensus 93.1 0.11 2.3E-06 64.9 5.1 50 507-562 1723-1800(2531)
73 KOG2807|consensus 93.0 1.7 3.6E-05 47.5 13.2 155 124-339 62-223 (378)
74 PF04056 Ssl1: Ssl1-like; Int 92.8 1.6 3.6E-05 44.7 12.3 161 128-351 1-170 (193)
75 PF12661 hEGF: Human growth fa 92.7 0.06 1.3E-06 31.6 1.1 13 471-483 1-13 (13)
76 smart00051 DSL delta serrate l 92.2 0.11 2.5E-06 43.7 2.7 43 472-532 19-62 (63)
77 KOG3637|consensus 91.5 0.11 2.4E-06 65.1 2.6 36 683-718 975-1010(1030)
78 PF04811 Sec23_trunk: Sec23/Se 91.4 0.59 1.3E-05 48.9 7.6 185 122-323 3-206 (243)
79 PRK10997 yieM hypothetical pro 90.2 1.3 2.8E-05 51.4 9.5 108 118-259 319-427 (487)
80 PF01102 Glycophorin_A: Glycop 89.7 0.46 1E-05 45.2 4.4 25 682-708 62-86 (122)
81 smart00051 DSL delta serrate l 88.9 0.28 6E-06 41.3 2.1 34 527-563 24-61 (63)
82 COG4548 NorD Nitric oxide redu 88.8 1.8 4E-05 50.1 9.1 119 118-260 442-564 (637)
83 PF06697 DUF1191: Protein of u 87.7 0.93 2E-05 48.8 5.7 41 686-727 212-252 (278)
84 KOG1214|consensus 85.9 2.2 4.7E-05 51.6 7.7 45 553-612 810-863 (1289)
85 PF03731 Ku_N: Ku70/Ku80 N-ter 85.4 5.7 0.00012 40.8 9.9 45 125-169 2-53 (224)
86 KOG1984|consensus 84.0 21 0.00045 44.0 14.7 203 97-319 385-612 (1007)
87 PF06305 DUF1049: Protein of u 82.6 2.9 6.3E-05 35.0 5.3 38 689-731 24-61 (68)
88 KOG1836|consensus 78.1 3.7 8.1E-05 54.1 6.5 81 470-559 695-785 (1705)
89 COG5151 SSL1 RNA polymerase II 75.7 18 0.0004 39.4 9.7 146 124-332 89-243 (421)
90 PF01414 DSL: Delta serrate li 75.7 1.3 2.8E-05 37.4 1.0 34 527-563 24-61 (63)
91 PF08229 SHR3_chaperone: ER me 75.4 4.3 9.3E-05 41.8 4.8 37 693-729 138-174 (196)
92 PF00008 EGF: EGF-like domain 74.0 2.9 6.3E-05 30.3 2.3 23 460-482 5-32 (32)
93 cd00055 EGF_Lam Laminin-type e 73.5 3.8 8.2E-05 32.6 3.1 19 469-487 18-37 (50)
94 TIGR00578 ku70 ATP-dependent D 71.7 1E+02 0.0022 36.9 15.9 44 125-168 13-65 (584)
95 PF04863 EGF_alliinase: Alliin 71.5 2.6 5.6E-05 34.6 1.7 28 458-485 16-51 (56)
96 PF06707 DUF1194: Protein of u 70.2 26 0.00057 36.4 9.1 170 122-351 3-195 (205)
97 smart00786 SHR3_chaperone ER m 68.9 7.9 0.00017 39.7 5.0 36 693-728 138-173 (196)
98 PF04285 DUF444: Protein of un 68.7 8.9 0.00019 43.9 5.9 45 123-167 247-292 (421)
99 PF01414 DSL: Delta serrate li 68.6 1.5 3.2E-05 37.0 -0.2 44 471-532 18-62 (63)
100 KOG2353|consensus 67.8 17 0.00037 46.3 8.5 123 116-260 219-347 (1104)
101 cd00922 Cyt_c_Oxidase_IV Cytoc 64.4 21 0.00046 34.7 6.7 50 685-740 73-128 (136)
102 KOG1217|consensus 64.3 16 0.00034 40.7 6.8 108 471-609 153-304 (487)
103 PTZ00395 Sec24-related protein 62.6 1.9E+02 0.0041 38.0 15.8 189 111-317 940-1153(1560)
104 PRK14762 membrane protein; Pro 60.4 9.5 0.00021 26.4 2.5 18 689-706 3-20 (27)
105 PRK05325 hypothetical protein; 60.4 14 0.00029 42.2 5.3 43 123-165 223-266 (401)
106 COG3552 CoxE Protein containin 60.0 11 0.00024 42.3 4.3 41 110-150 206-246 (395)
107 KOG3658|consensus 57.7 21 0.00046 42.7 6.3 106 455-593 463-578 (764)
108 PF01034 Syndecan: Syndecan do 57.2 3.5 7.6E-05 34.9 0.0 23 688-710 14-36 (64)
109 TIGR02877 spore_yhbH sporulati 56.1 20 0.00044 40.3 5.6 43 123-165 203-246 (371)
110 PF00053 Laminin_EGF: Laminin 56.1 7.3 0.00016 30.6 1.7 19 469-487 17-36 (49)
111 PF11443 DUF2828: Domain of un 55.4 39 0.00084 40.0 8.0 169 123-353 341-518 (534)
112 PF09472 MtrF: Tetrahydrometha 55.4 12 0.00025 31.9 2.8 24 685-708 41-64 (64)
113 PF05808 Podoplanin: Podoplani 55.1 4 8.6E-05 40.6 0.0 29 682-710 127-156 (162)
114 PF12877 DUF3827: Domain of un 55.0 5.8 0.00013 47.1 1.3 27 685-711 268-294 (684)
115 PF15176 LRR19-TM: Leucine-ric 54.5 18 0.0004 33.3 4.1 38 683-720 13-50 (102)
116 cd00054 EGF_CA Calcium-binding 53.4 12 0.00026 26.4 2.4 25 460-484 10-38 (38)
117 KOG1836|consensus 52.8 27 0.0006 46.5 6.9 115 430-562 876-1017(1705)
118 COG4867 Uncharacterized protei 52.4 2.1E+02 0.0046 33.0 12.6 179 112-356 452-648 (652)
119 PF15330 SIT: SHP2-interacting 51.4 18 0.00039 33.8 3.7 8 733-740 42-49 (107)
120 COG4985 ABC-type phosphate tra 50.9 8.2 0.00018 40.5 1.5 32 683-714 16-48 (289)
121 PF07096 DUF1358: Protein of u 49.9 25 0.00053 33.7 4.3 37 685-722 79-115 (124)
122 PF01299 Lamp: Lysosome-associ 49.2 9.2 0.0002 41.7 1.7 29 678-708 262-290 (306)
123 COG4547 CobT Cobalamin biosynt 49.0 16 0.00034 42.0 3.4 64 99-166 391-459 (620)
124 PF10633 NPCBM_assoc: NPCBM-as 49.0 23 0.00049 30.5 3.7 30 92-122 36-65 (78)
125 PHA02887 EGF-like protein; Pro 48.3 11 0.00025 35.6 1.8 25 460-485 93-123 (126)
126 cd00053 EGF Epidermal growth f 47.5 20 0.00043 24.8 2.7 25 460-484 7-36 (36)
127 smart00180 EGF_Lam Laminin-typ 47.5 12 0.00026 29.3 1.6 18 469-486 17-35 (46)
128 KOG4260|consensus 47.0 14 0.00031 39.7 2.6 35 527-564 135-180 (350)
129 smart00179 EGF_CA Calcium-bind 46.6 18 0.00038 26.1 2.3 25 460-484 10-39 (39)
130 PF13908 Shisa: Wnt and FGF in 46.4 9.8 0.00021 38.2 1.2 15 686-700 77-91 (179)
131 PHA03265 envelope glycoprotein 46.3 11 0.00025 41.7 1.7 27 683-709 347-373 (402)
132 COG1721 Uncharacterized conser 45.7 35 0.00076 38.8 5.7 52 116-170 219-276 (416)
133 PF12955 DUF3844: Domain of un 44.4 16 0.00034 34.0 2.1 26 459-484 13-60 (103)
134 PF02936 COX4: Cytochrome c ox 43.0 76 0.0017 31.1 6.7 49 685-739 73-127 (142)
135 PF08374 Protocadherin: Protoc 42.8 10 0.00022 39.5 0.7 42 687-733 41-83 (221)
136 PRK13453 F0F1 ATP synthase sub 42.7 41 0.00088 33.7 5.0 37 683-719 15-51 (173)
137 PRK13461 F0F1 ATP synthase sub 42.6 41 0.00089 33.0 4.9 36 684-719 3-38 (159)
138 PF14880 COX14: Cytochrome oxi 41.8 86 0.0019 26.0 5.9 32 688-719 16-48 (59)
139 PRK06231 F0F1 ATP synthase sub 41.3 41 0.00089 34.8 4.9 35 684-718 46-80 (205)
140 PF01882 DUF58: Protein of unk 41.3 46 0.00099 28.8 4.5 39 122-160 40-84 (86)
141 smart00423 PSI domain found in 41.2 25 0.00055 27.2 2.6 11 3-13 14-24 (46)
142 PRK14473 F0F1 ATP synthase sub 40.8 46 0.00099 32.8 5.0 36 684-719 6-41 (164)
143 PF02439 Adeno_E3_CR2: Adenovi 40.4 40 0.00087 25.8 3.3 21 685-705 4-24 (38)
144 COG3825 Uncharacterized protei 39.9 51 0.0011 36.4 5.4 58 111-169 220-277 (393)
145 KOG0196|consensus 39.8 51 0.0011 40.7 5.8 84 403-490 194-284 (996)
146 PRK14472 F0F1 ATP synthase sub 39.0 48 0.001 33.1 4.8 37 683-719 15-51 (175)
147 TIGR01710 typeII_sec_gspG gene 38.7 62 0.0013 31.0 5.4 33 694-726 9-41 (134)
148 COG4218 MtrF Tetrahydromethano 38.4 35 0.00076 29.5 3.1 23 685-707 50-72 (73)
149 PRK09173 F0F1 ATP synthase sub 37.6 46 0.00099 32.7 4.4 33 689-721 4-38 (159)
150 PF11014 DUF2852: Protein of u 37.5 37 0.0008 32.2 3.4 28 683-712 9-36 (115)
151 PF11174 DUF2970: Protein of u 37.4 47 0.001 27.5 3.7 22 685-706 30-51 (56)
152 COG2165 PulG Type II secretory 36.4 65 0.0014 29.8 5.1 33 694-726 16-48 (149)
153 PF06799 DUF1230: Protein of u 36.3 45 0.00097 32.8 3.9 42 685-726 61-102 (144)
154 PTZ00106 60S ribosomal protein 36.0 92 0.002 29.1 5.8 74 228-350 29-107 (108)
155 PF12044 Metallopep: Putative 34.7 6.4E+02 0.014 29.2 13.4 200 90-310 57-293 (423)
156 PHA03099 epidermal growth fact 34.5 24 0.00052 34.0 1.7 25 460-485 52-82 (139)
157 KOG0196|consensus 33.7 29 0.00064 42.6 2.7 54 506-562 246-318 (996)
158 PF02723 NS3_envE: Non-structu 32.9 61 0.0013 29.0 3.9 22 694-715 23-44 (82)
159 KOG1218|consensus 32.8 1.6E+02 0.0034 31.5 7.9 14 549-562 159-172 (316)
160 PF14316 DUF4381: Domain of un 32.7 96 0.0021 30.1 5.7 30 681-710 11-41 (146)
161 KOG3607|consensus 32.6 26 0.00056 42.9 2.0 31 457-487 628-659 (716)
162 COG5416 Uncharacterized integr 32.3 80 0.0017 29.1 4.5 38 684-726 60-97 (98)
163 PF05568 ASFV_J13L: African sw 32.3 83 0.0018 31.0 5.0 16 713-728 53-68 (189)
164 PRK07352 F0F1 ATP synthase sub 32.2 73 0.0016 31.8 4.9 36 684-719 17-52 (174)
165 PF06295 DUF1043: Protein of u 32.1 66 0.0014 30.8 4.4 16 716-731 23-38 (128)
166 PF14575 EphA2_TM: Ephrin type 31.8 38 0.00082 29.5 2.4 8 689-696 2-9 (75)
167 KOG1217|consensus 31.7 99 0.0021 34.4 6.4 89 461-563 280-389 (487)
168 PF10883 DUF2681: Protein of u 31.7 1E+02 0.0022 27.9 5.1 23 707-729 19-41 (87)
169 PF05624 LSR: Lipolysis stimul 31.5 40 0.00087 26.8 2.2 17 686-702 5-21 (49)
170 PF00558 Vpu: Vpu protein; In 31.1 49 0.0011 29.5 3.0 10 718-727 28-37 (81)
171 PF10661 EssA: WXG100 protein 30.9 59 0.0013 32.0 3.9 25 686-710 117-143 (145)
172 KOG1218|consensus 30.8 2.4E+02 0.0052 30.0 8.9 118 470-609 49-173 (316)
173 KOG4075|consensus 30.7 93 0.002 31.3 5.1 52 683-739 95-152 (167)
174 PF11884 DUF3404: Domain of un 30.6 97 0.0021 33.4 5.7 18 696-713 237-254 (262)
175 PF12768 Rax2: Cortical protei 30.0 50 0.0011 35.9 3.5 21 687-707 234-254 (281)
176 PF08114 PMP1_2: ATPase proteo 29.9 52 0.0011 25.6 2.5 21 689-709 11-31 (43)
177 PRK00665 petG cytochrome b6-f 29.9 72 0.0016 24.2 3.2 23 684-708 4-26 (37)
178 PRK10506 hypothetical protein; 29.7 1.1E+02 0.0023 30.4 5.5 33 696-728 19-51 (162)
179 PRK13275 mtrF tetrahydromethan 29.4 71 0.0015 27.5 3.6 24 685-708 41-64 (67)
180 PF15069 FAM163: FAM163 family 29.3 31 0.00068 33.8 1.6 28 687-714 6-33 (143)
181 TIGR01685 MDP-1 magnesium-depe 29.3 3.3E+02 0.0071 27.5 9.0 75 250-327 3-79 (174)
182 PHA02639 EEV host range protei 29.2 35 0.00077 37.3 2.2 25 684-708 256-280 (295)
183 CHL00008 petG cytochrome b6/f 29.2 78 0.0017 24.0 3.2 23 684-708 4-26 (37)
184 PRK13460 F0F1 ATP synthase sub 29.0 87 0.0019 31.2 4.8 33 687-719 17-49 (173)
185 COG3462 Predicted membrane pro 28.7 61 0.0013 30.5 3.2 48 687-735 49-101 (117)
186 PF06024 DUF912: Nucleopolyhed 28.6 20 0.00044 32.9 0.2 35 687-722 61-95 (101)
187 smart00181 EGF Epidermal growt 28.5 32 0.00069 24.4 1.2 24 460-484 7-35 (35)
188 KOG3512|consensus 28.0 1.2E+02 0.0027 35.2 6.1 14 471-484 296-309 (592)
189 PHA02831 EEV host range protei 27.9 49 0.0011 35.8 3.0 26 683-708 229-254 (268)
190 PF09049 SNN_transmemb: Stanni 27.8 92 0.002 22.7 3.3 18 691-708 16-33 (33)
191 PF02480 Herpes_gE: Alphaherpe 27.5 20 0.00044 41.3 0.0 37 685-721 350-386 (439)
192 PF02009 Rifin_STEVOR: Rifin/s 27.3 90 0.0019 34.4 4.9 18 694-711 262-279 (299)
193 PRK01018 50S ribosomal protein 27.2 1.6E+02 0.0035 26.9 5.8 73 228-349 20-97 (99)
194 PF02937 COX6C: Cytochrome c o 27.1 1.5E+02 0.0032 26.0 5.2 36 689-725 17-52 (73)
195 TIGR03677 rpl7ae 50S ribosomal 27.0 2.4E+02 0.0051 26.6 7.0 99 207-356 12-115 (117)
196 PRK08475 F0F1 ATP synthase sub 26.9 94 0.002 31.0 4.6 33 687-719 23-55 (167)
197 KOG3415|consensus 26.8 1.1E+02 0.0024 29.0 4.5 41 686-726 51-95 (129)
198 PF05773 RWD: RWD domain; Int 26.8 95 0.0021 27.7 4.3 60 93-153 26-95 (113)
199 PF12606 RELT: Tumour necrosis 26.7 64 0.0014 26.2 2.7 23 689-711 2-24 (50)
200 PF12273 RCR: Chitin synthesis 26.4 57 0.0012 31.1 2.9 10 713-722 20-29 (130)
201 PF01102 Glycophorin_A: Glycop 26.3 61 0.0013 31.1 2.9 10 698-707 73-82 (122)
202 PF15106 TMEM156: TMEM156 prot 26.1 1E+02 0.0022 32.2 4.7 64 646-725 145-209 (226)
203 PTZ00382 Variant-specific surf 26.0 13 0.00029 33.9 -1.5 21 688-708 67-88 (96)
204 cd01459 vWA_copine_like VWA Co 25.9 3.7E+02 0.008 28.9 9.1 54 202-260 115-168 (254)
205 PRK11677 hypothetical protein; 25.8 1.1E+02 0.0024 29.8 4.6 14 718-731 29-42 (134)
206 PTZ00046 rifin; Provisional 25.6 92 0.002 35.1 4.6 24 687-711 315-338 (358)
207 PRK14748 kdpF potassium-transp 25.6 99 0.0021 22.3 3.1 21 688-708 4-24 (29)
208 PF14610 DUF4448: Protein of u 25.6 17 0.00036 36.9 -1.0 23 686-708 159-181 (189)
209 PF01299 Lamp: Lysosome-associ 25.2 36 0.00079 37.1 1.4 25 685-709 272-296 (306)
210 TIGR01477 RIFIN variant surfac 25.1 96 0.0021 34.8 4.6 24 687-711 310-333 (353)
211 PF06365 CD34_antigen: CD34/Po 24.9 30 0.00066 35.8 0.7 32 687-722 101-132 (202)
212 PRK06568 F0F1 ATP synthase sub 24.8 1E+02 0.0022 30.6 4.4 31 689-719 7-37 (154)
213 PF11044 TMEMspv1-c74-12: Plec 24.8 3.2E+02 0.007 21.8 6.0 15 685-702 3-17 (49)
214 PRK01741 cell division protein 24.6 56 0.0012 36.3 2.7 22 684-705 3-24 (332)
215 TIGR03778 VPDSG_CTERM VPDSG-CT 24.5 89 0.0019 22.1 2.7 18 692-709 5-22 (26)
216 PF14828 Amnionless: Amnionles 24.5 15 0.00033 42.3 -1.7 36 686-721 340-383 (437)
217 PRK00888 ftsB cell division pr 24.5 1.2E+02 0.0026 28.2 4.5 31 697-727 6-43 (105)
218 PF06305 DUF1049: Protein of u 24.3 2.6E+02 0.0056 23.1 6.2 41 687-729 26-66 (68)
219 PF04478 Mid2: Mid2 like cell 24.2 10 0.00022 37.6 -2.8 20 686-706 51-70 (154)
220 COG5547 Small integral membran 24.1 1.2E+02 0.0025 25.5 3.7 26 687-712 9-34 (62)
221 COG2304 Uncharacterized protei 24.1 3.2E+02 0.007 30.0 8.7 110 117-257 32-143 (399)
222 PRK14471 F0F1 ATP synthase sub 24.1 1.2E+02 0.0026 29.9 4.8 35 685-719 7-41 (164)
223 PF01788 PsbJ: PsbJ; InterPro 24.1 1.2E+02 0.0026 23.6 3.5 20 689-708 11-30 (40)
224 PRK07714 hypothetical protein; 23.9 2.8E+02 0.0061 25.2 6.8 27 228-262 22-48 (100)
225 PF15149 CATSPERB: Cation chan 23.8 1.6E+02 0.0035 34.5 6.2 53 668-727 477-529 (540)
226 TIGR02209 ftsL_broad cell divi 23.8 2E+02 0.0043 24.9 5.6 31 698-728 11-41 (85)
227 PRK13454 F0F1 ATP synthase sub 23.7 1.2E+02 0.0026 30.6 4.8 24 697-720 38-66 (181)
228 smart00591 RWD domain in RING 23.7 4.4E+02 0.0095 23.2 8.0 53 98-150 24-84 (107)
229 PF04999 FtsL: Cell division p 23.5 1.9E+02 0.004 25.9 5.5 33 697-729 21-53 (97)
230 PF15061 DUF4538: Domain of un 23.4 1.1E+02 0.0024 25.7 3.5 36 685-725 6-41 (58)
231 CHL00019 atpF ATP synthase CF0 23.3 1.2E+02 0.0027 30.5 4.8 35 685-719 23-57 (184)
232 PRK11899 prephenate dehydratas 22.8 1.4E+02 0.003 32.5 5.3 48 114-168 226-273 (279)
233 PRK13601 putative L7Ae-like ri 22.6 2.2E+02 0.0048 25.3 5.6 48 228-318 12-59 (82)
234 PF11044 TMEMspv1-c74-12: Plec 22.4 3.3E+02 0.0072 21.7 5.7 15 687-704 11-25 (49)
235 PF15345 TMEM51: Transmembrane 22.3 64 0.0014 34.1 2.5 28 701-729 68-95 (233)
236 KOG1214|consensus 22.3 1.5E+02 0.0032 36.9 5.6 58 539-609 740-820 (1289)
237 PF11446 DUF2897: Protein of u 22.0 88 0.0019 25.9 2.7 20 685-705 4-23 (55)
238 cd00055 EGF_Lam Laminin-type e 21.6 72 0.0016 25.2 2.1 20 587-614 14-37 (50)
239 PF06040 Adeno_E3: Adenovirus 21.5 57 0.0012 30.9 1.7 24 685-708 82-105 (127)
240 COG1470 Predicted membrane pro 21.2 1.1E+02 0.0024 35.6 4.2 32 101-132 39-70 (513)
241 TIGR02762 TraL_TIGR type IV co 21.2 1E+02 0.0022 28.1 3.2 20 687-706 28-47 (95)
242 PF04971 Lysis_S: Lysis protei 21.0 1.3E+02 0.0028 26.0 3.6 31 690-721 35-65 (68)
243 PRK09190 hypothetical protein; 20.8 3.5E+02 0.0075 28.6 7.5 27 228-262 115-141 (220)
244 COG5047 SEC23 Vesicle coat com 20.8 2.1E+02 0.0045 34.3 6.3 70 94-168 95-164 (755)
245 PRK10622 pheA bifunctional cho 20.7 1.5E+02 0.0033 33.7 5.2 48 114-168 329-376 (386)
246 PRK14474 F0F1 ATP synthase sub 20.5 1.5E+02 0.0032 31.7 4.9 35 685-719 4-38 (250)
No 1
>KOG1226|consensus
Probab=100.00 E-value=1e-194 Score=1624.48 Aligned_cols=687 Identities=43% Similarity=0.786 Sum_probs=646.3
Q ss_pred CCCCCccccccCCCCC----CCCCCCcC-CCCCcccCCCCCCceecCCcceeEeecccccccccccCCcccCCCCCCCCC
Q psy12966 2 RICPVCPTYNSSEYGD----KKRCFQPS-LNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSSSSS 76 (741)
Q Consensus 2 ~~~p~CaWC~~~~f~~----~~RC~~~~-l~~~~~~~gC~~~~i~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 76 (741)
++||.||||++++|.. +.|||+++ |+ ++||+.++|++|+++++|++++||++.+
T Consensus 38 ~~~p~CaWC~~~~f~~~~p~~~RCd~~~~Ll----~~gC~~~~Ie~p~s~~~i~~d~~ls~~~----------------- 96 (783)
T KOG1226|consen 38 QAGPECAWCTQENFTGGSPRSERCDTRANLL----AKGCPPDDIENPRSSFDILEDKPLSDGG----------------- 96 (783)
T ss_pred hhCCCcccccccccCCCCCcccccccHHHHH----HcCCChhhccCCccceeecccCcccccC-----------------
Confidence 5799999999999942 45999999 99 8999999999999999999999998752
Q ss_pred CCCCCCCCCCCCCCceeecceeEEEEEeeCccEEEEEEEeccCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhh
Q psy12966 77 GSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEV 156 (741)
Q Consensus 77 ~~~~~~~~~~~~~~~~qi~Pq~v~~~LR~G~~~~~~~~~~~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~ 156 (741)
.+.+++||+||++.|+||||++++|+|+|++|++||||||||||||+||+|||++||+||.+|+++|+++
T Consensus 97 ----------~~~~~~Qi~PQ~~~l~LRpg~~~~f~l~~r~a~~yPVDLYyLMDlS~SM~DDl~~l~~LG~~L~~~m~~l 166 (783)
T KOG1226|consen 97 ----------SGSDITQITPQELRLRLRPGEEQTFQLKVRQAEDYPVDLYYLMDLSYSMKDDLENLKSLGTDLAREMRKL 166 (783)
T ss_pred ----------cccceeEeccceEEEEecCCCceeEEEEEeeccCCCeeEEEEeecchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 1236899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeEEeeEeecccccCccccCcccccCCCCC---CCCCcceeeeecCCccHHHHHHhccceeeccCCCCCcchHHHHH
Q psy12966 157 TSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAG---CAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIM 233 (741)
Q Consensus 157 t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~---c~~~f~f~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~ 233 (741)
|+||||||||||||+++||++|+|++|+|||+. |+|||+|||+|+||+|+++|.++|++++||||+|+|||||||||
T Consensus 167 T~nfrlGFGSFVDK~v~P~i~~~pekl~npc~~~~~C~ppfgfkhvLsLT~~~~~F~~~V~~q~ISgNlDaPEGGfDAim 246 (783)
T KOG1226|consen 167 TSNFRLGFGSFVDKTVSPYISTTPEKLRNPCPNYKNCAPPFGFKHVLSLTNDAEEFNEEVGKQRISGNLDAPEGGFDAIM 246 (783)
T ss_pred hccCCccccchhccccccccccCcHHhcCCCCCcccCCCCcccceeeecCCChHHHHHHHhhceeccCCCCCCchHHHHH
Confidence 999999999999999999999999999999954 99999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEE
Q psy12966 234 QAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLI 313 (741)
Q Consensus 234 qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~I 313 (741)
|||||+++||||++|+|||||+||+.||+|+|||||||+.||||+|||+.+|+|++|++|||||++||+++|.++||++|
T Consensus 247 QaavC~~~IGWR~~a~~lLVF~td~~~H~a~DgkLaGiv~pnDG~CHL~~~g~Yt~S~~qdyPSia~l~~kl~~~ni~~I 326 (783)
T KOG1226|consen 247 QAAVCTEKIGWRNDATRLLVFSTDAGFHFAGDGKLAGIVQPNDGQCHLDKNGEYTQSTTQDYPSIAQLAQKLADNNINTI 326 (783)
T ss_pred hhhhccccccccccceeEEEEEcCcceeeecccceeeEecCCCCccccCCCCccceecCCCCCcHHHHHHHHhhhcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecchhhhHHHHhhcccCceeeeccCCcchHHHHHHHHhhhccceEEeeeCC-CCceEEEEEeecCCCCCCCCCCCCC
Q psy12966 314 FAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKDGPSKPTAKC 392 (741)
Q Consensus 314 favt~~~~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI~~aY~~i~s~v~l~~~~-~~~~~v~~~s~C~~~~~~~~~~~~C 392 (741)
||||++++++|++|+.+||+++||+|++|||||++||.+||++|+|+|+|++.+ |++|.++|++.|.++..+.++++.|
T Consensus 327 FAVt~~~~~~Y~~l~~lip~s~vg~l~~DSsNi~qLI~~ay~~l~s~v~l~~~~~p~gl~~~y~s~C~~g~~~~~~~~~c 406 (783)
T KOG1226|consen 327 FAVTKNSQSLYEELSNLIPGSAVGVLSEDSSNIVQLIIEAYNSLSSKVILEDENQPEGLSLSYTSSCSNGVSFPGKRRKC 406 (783)
T ss_pred HHHhhhhhhHHHhhhhhCCcccccccccchhhHHHHHHHHHHhccceEEEeecCCCCceeEEEeeecCCCCccCCccCCC
Confidence 999999999999999999999999999999999999999999999999999966 9999999999999998888766799
Q ss_pred CCcccCcEEEEEEEEEeccCCCCCcccceEEEEEecccceeEEEecccCCCccCCCCCCCCCCCCCCCCCCCeEEeCcee
Q psy12966 393 DGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLC 472 (741)
Q Consensus 393 ~~v~~g~~V~F~v~v~~~~Cp~~~~~~~~~~~I~~~g~~e~l~v~l~~~C~C~Ce~~~~~~~~~~s~~Csg~G~c~cG~C 472 (741)
.||++|++|+|+|+++++.||.. .+.+.|+|+|+||+|++.|.|+.+|+|+|+.+ .++++..|+|||++.||+|
T Consensus 407 ~~i~~gd~v~f~v~~~~~~C~~~--~~~~~~~i~pvgf~e~l~v~v~~~C~C~C~~~----~e~~s~~C~g~G~~~CG~C 480 (783)
T KOG1226|consen 407 SGITIGDEVTFEVSVTAKKCPPE--DQKGSFIIRPVGFTETLEVIVQYNCECDCQDQ----GEPNSALCHGNGTFVCGQC 480 (783)
T ss_pred CCcccCceeEEEEecccccCCCc--cccceEEEccCCCCcceEEEeecccccccccc----CCCCccccCCCCcEEecce
Confidence 99999999999999999999933 33479999999999999999999999999998 5889999999999999999
Q ss_pred eeCCCccCCcccccCCCCCCc-CcccCccCCCCccccCCCceecCCCCcc-CCCCCceecCcccccee----ecCCCC--
Q psy12966 473 ECDQSHFGRRCECDAESSQGI-TSTGCKADANSTMECSGRGNCLCNQKSL-DNIVNVIISHVIVTTEC----CVLDLN-- 544 (741)
Q Consensus 473 ~C~~G~~G~~CeC~~~~~~~~-~~~~C~~~~~~~~~Csg~G~C~cG~C~C-~~~~~~~~G~~~~~Cec----C~~~~g-- 544 (741)
.|++||.|..|||+....++. ....|+..++ .++|||||.|+||+|+| +.....|+|+| ||| |+++.|
T Consensus 481 ~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~-~~vCSgrG~C~CGqC~C~~~~~~~i~G~f---CECDnfsC~r~~g~l 556 (783)
T KOG1226|consen 481 RCDEGWLGKKCECSTDELSSSEEEDKCRENSD-SPVCSGRGDCVCGQCVCHKPDNGKIYGKF---CECDNFSCERHKGVL 556 (783)
T ss_pred ecCCCCCCCcccCCccccCcHhHHhhccCCCC-CCCcCCCCcEeCCceEecCCCCCceeeee---eeccCcccccccCcc
Confidence 999999999999998775543 5678998877 57999999999999999 55555799999 999 999966
Q ss_pred --CceeeecCceEecCCcee-----ccccccCCCCccccCccccCCccccccccccccccccccCCCCCccc--CCCCC-
Q psy12966 545 --TVGACVASAIVKTAGLVQ-----RVTVAPLMTPVYLLREERCARARESVSAVCANVLKIAREDIPAGSAR--NARPV- 614 (741)
Q Consensus 545 --G~G~C~cg~C~C~~G~~G-----~~~~~~C~~~~~~~~~~~Csg~G~C~cG~C~~~~~C~~~~~~gy~G~--e~Cp~- 614 (741)
|||+|.||+|+|++||+| +.++++|+.++ | .+|||||+|.||+|+ | .+++|+|. |.||+
T Consensus 557 C~g~G~C~CG~CvC~~GwtG~~C~C~~std~C~~~~---G-~iCSGrG~C~Cg~C~----C---~~~~~sG~~CE~cptc 625 (783)
T KOG1226|consen 557 CGGHGRCECGRCVCNPGWTGSACNCPLSTDTCESSD---G-QICSGRGTCECGRCK----C---TDPPYSGEFCEKCPTC 625 (783)
T ss_pred cCCCCeEeCCcEEcCCCCccCCCCCCCCCccccCCC---C-ceeCCCceeeCCceE----c---CCCCcCcchhhcCCCC
Confidence 899999999999999999 67789999987 7 899999999999999 9 57779999 99999
Q ss_pred cCCCCCCCceeeecccccccccc------------cCcCCCC----CCCceeecCCCcEEEEEEEEcCCCcEEEEEeccC
Q psy12966 615 LEDVQEFKNCIQCQVLQDRTIVR------------GGNEAKD----ENLCVYFDEDECKFEYVYWYDAQGKIHLRAQQER 678 (741)
Q Consensus 615 ~~~C~~~~~Cv~C~~~~~g~~~~------------~v~~~~~----~~~C~~~~~d~C~~~f~y~~~~~~~~~i~v~~~~ 678 (741)
+++|.++++||+|+++++|+..+ .|++++. ...|+++|+++|+|+|+|..+..|+.+|+|++++
T Consensus 626 ~~~C~~~~~CveC~~~~~g~~~~~C~~~C~~~~~~~v~~~~~~~~~~~~C~~~~~~dc~~~f~y~~~~~g~~~l~v~~~~ 705 (783)
T KOG1226|consen 626 PDPCAENKSCVECQAFETGPVGDTCVEECSSFVVTLVEELPVLDDEVVHCKERDEDDCWFFFTYSDDASGKSTLHVREEK 705 (783)
T ss_pred CCcccccccchhhcccccccccchHHHHhhhhcchhhccccccCCccceeeeecCCCcEEEEEEEecCCCcEEEEEEecc
Confidence 88999999999999999997644 2344332 2589999999999999999777899999999999
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccCCCCCCCCC
Q psy12966 679 ECPPHVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKERMLAKWDTKLNSLIY 741 (741)
Q Consensus 679 ~Cp~~~~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~kFekE~~~akw~~~~NPly~ 741 (741)
+||++|+||+|+||+|+|||||||+||+|||+|++|||||||||||+||++|||++. |||||
T Consensus 706 ~cp~~~~~~~i~lgvv~~ivligl~llliwkll~~~~DrrE~akFe~er~~a~w~~~-nPlyk 767 (783)
T KOG1226|consen 706 ECPPGPNILAIVLGVVAGIVLIGLALLLIWKLLTTIHDRREFAKFEKERLNAKWDTA-NPLYK 767 (783)
T ss_pred cCCCCCcEeeehHHHHHHHHHHHHHHHHHHHHhheecccHHhhhhhHHHHhhhhccC-CCcee
Confidence 999999999999999999999999999999999999999999999999999999996 99997
No 2
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=100.00 E-value=1.9e-131 Score=1073.60 Aligned_cols=409 Identities=53% Similarity=0.891 Sum_probs=391.3
Q ss_pred CCCCCccccccCCCCC--CCCCCCcC-CCCCcccCCCCCCceecCCcceeEeecccccccccccCCcccCCCCCCCCCCC
Q psy12966 2 RICPVCPTYNSSEYGD--KKRCFQPS-LNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSSSSSGS 78 (741)
Q Consensus 2 ~~~p~CaWC~~~~f~~--~~RC~~~~-l~~~~~~~gC~~~~i~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 78 (741)
+.+|.||||++++|++ ..|||+.+ |+ .+||+.++|+||++.+.+++|+||++..
T Consensus 7 ~~~p~CaWC~~~~f~~~~~~RCd~~~~l~----~~gC~~~~i~~p~s~~~~~~~~pl~~~~------------------- 63 (423)
T smart00187 7 QSGPNCAWCTDENFTSGGSARCDSRANLL----AKGCSPESIENPKSSLDVLVDKPLSDKG------------------- 63 (423)
T ss_pred CCCCCccccCCccCCCCCCCCCCChhHHh----HCCCCHHHccCCCCceEEeecccCcccc-------------------
Confidence 5799999999999965 46999999 88 7899999999999999999999998641
Q ss_pred CCCCCCCCCCCCceeecceeEEEEEeeCccEEEEEEEeccCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcC
Q psy12966 79 FSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTS 158 (741)
Q Consensus 79 ~~~~~~~~~~~~~~qi~Pq~v~~~LR~G~~~~~~~~~~~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~ 158 (741)
...+++||+||+|+|+||||++++|+++|+++++||||||||||+|+||+|||++||+||.+|+++|+++|+
T Consensus 64 --------~~~~~vQi~PQ~v~l~LRpG~~~~f~~~~~~a~~yPvDLYyLMDlS~SM~ddl~~lk~lg~~L~~~m~~it~ 135 (423)
T smart00187 64 --------SAEQAVQVSPQRVRLKLRPGEPQNFTLTVRQAEDYPVDLYYLMDLSYSMKDDLDNLKSLGDDLAREMKGLTS 135 (423)
T ss_pred --------CCCCceEeccceEEEEeccCCcEEEEEEEEecccCccceEEEEeCCccHHHHHHHHHHHHHHHHHHHHhccc
Confidence 124689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEeeEeecccccCccccCcccccCCC----CCCCCCcceeeeecCCccHHHHHHhccceeeccCCCCCcchHHHHHH
Q psy12966 159 NFRLGFGSFVDKVVMPYVSMVPKNLLEPC----AGCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQ 234 (741)
Q Consensus 159 ~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc----~~c~~~f~f~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~q 234 (741)
|||||||+|||||++||++|+|++|+||| ..|+|||+|||+|+||+|+++|+++|++++||||+|+||||||||||
T Consensus 136 n~rlGfGsFVDK~v~P~~~t~p~~l~~PC~~~~~~c~p~f~f~~~L~LT~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQ 215 (423)
T smart00187 136 NFRLGFGSFVDKTVSPFVSTRPEKLENPCPNYNLTCEPPYGFKHVLSLTDDTDEFNEEVKKQRISGNLDAPEGGFDAIMQ 215 (423)
T ss_pred CceeeEEEeecCccCCcccCCHHHhcCCCcCCCCCcCCCcceeeeccCCCCHHHHHHHHhhceeecCCcCCcccHHHHHH
Confidence 99999999999999999999999999999 35999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEE
Q psy12966 235 AIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIF 314 (741)
Q Consensus 235 a~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~If 314 (741)
||||+++||||++|||||||+|||+||+||||||||||+||||+|||+.+|+|++|+++|||||+||+++|+|+||+|||
T Consensus 216 aaVC~~~IGWR~~a~rllv~~TDa~fH~AGDGkLaGIv~PNDg~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~e~nI~~IF 295 (423)
T smart00187 216 AAVCTEQIGWREDARRLLVFSTDAGFHFAGDGKLAGIVQPNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENNINPIF 295 (423)
T ss_pred HHhhccccccCCCceEEEEEEcCCCccccCCcceeeEecCCCCcceeCCCCCcCccCcCCCCCHHHHHHHHHhcCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecchhhhHHHHhhcccCceeeeccCCcchHHHHHHHHhhhccceEEeeeCC-CCceEEEEEeecCCCCCCCCCCCCCC
Q psy12966 315 AVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKDGPSKPTAKCD 393 (741)
Q Consensus 315 avt~~~~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI~~aY~~i~s~v~l~~~~-~~~~~v~~~s~C~~~~~~~~~~~~C~ 393 (741)
|||++++++|++|+++|+|+++|+|++||||||+||++||++|+|+|+|++++ |++|+++|+++|+++...++. ++|+
T Consensus 296 AVT~~~~~~Y~~Ls~lipgs~vg~Ls~DSsNIv~LI~~aY~~i~S~V~l~~~~~p~~v~~~y~s~C~~g~~~~~~-~~C~ 374 (423)
T smart00187 296 AVTKKQVSLYKELSALIPGSSVGVLSEDSSNVVELIKDAYNKISSRVELEDNSLPEGVSVTYTSSCPGGVVGPGT-RKCE 374 (423)
T ss_pred EEcccchhHHHHHHHhcCcceeeecccCcchHHHHHHHHHHhhceEEEEecCCCCCcEEEEEEeeCCCCCcccCC-cccC
Confidence 99999999999999999999999999999999999999999999999999987 999999999999998776653 6899
Q ss_pred CcccCcEEEEEEEEEeccCCCCCcccceEEEEEecccceeEEEecccCCCc
Q psy12966 394 GLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCEC 444 (741)
Q Consensus 394 ~v~~g~~V~F~v~v~~~~Cp~~~~~~~~~~~I~~~g~~e~l~v~l~~~C~C 444 (741)
||++|++|+|+|+|++++||+.. +.++|.|+|+||+|+|+|+|+++|+|
T Consensus 375 ~v~iG~~V~F~v~vta~~Cp~~~--~~~~~~i~p~gf~e~l~V~l~~~C~C 423 (423)
T smart00187 375 GVKIGDTVSFEVTVTATKCPPED--QEHSIRIRPVGFSETLEVELTFLCDC 423 (423)
T ss_pred CcccCCEEEEEEEEEeCcCCCcc--ccceEEEEecccceeEEEEEEEecCC
Confidence 99999999999999999999653 23589999999999999999999998
No 3
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=100.00 E-value=1.3e-124 Score=1040.04 Aligned_cols=410 Identities=51% Similarity=0.891 Sum_probs=343.2
Q ss_pred CCCCCccccccCCCC---C-CCCCCCcC-CCCCcccCCCCCCceecCCcceeEeecccccccccccCCcccCCCCCCCCC
Q psy12966 2 RICPVCPTYNSSEYG---D-KKRCFQPS-LNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSSSSS 76 (741)
Q Consensus 2 ~~~p~CaWC~~~~f~---~-~~RC~~~~-l~~~~~~~gC~~~~i~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 76 (741)
+.+|+||||++++|. + ..||++.+ |+ .+||+.++|+||++++.+++|.||++..
T Consensus 7 ~~~p~CaWC~~~~f~~~~~~~~RC~~~~~l~----~~gC~~~~I~~P~s~~~~~~~~~ls~~~----------------- 65 (426)
T PF00362_consen 7 QSGPSCAWCSDENFTNEGESGSRCDTPENLL----ERGCPSSDIENPRSSVTITQNKPLSDKG----------------- 65 (426)
T ss_dssp TT-TTEEEE-STTCS-TTTTCGSEEEHHHHH----HCT--CTTEE---BEEEEEE-SSSCSCT-----------------
T ss_pred CCCCCCcccCCCCccccCCCCCCCcchhhHh----hcCCCHHHEECCCceeEEecccCCcccc-----------------
Confidence 578999999999993 1 57999999 88 7899999999999999999999998741
Q ss_pred CCCCCCCCCCCCCCceeecceeEEEEEeeCccEEEEEEEeccCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhh
Q psy12966 77 GSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEV 156 (741)
Q Consensus 77 ~~~~~~~~~~~~~~~~qi~Pq~v~~~LR~G~~~~~~~~~~~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~ 156 (741)
....+++||+||+++|+||||++++|+|+|++|++||||||||||||+||+|||++||+||.+|+++|+++
T Consensus 66 ---------~~~~~~vQl~PQ~v~l~LRpG~~~~f~v~~~~a~~yPvDLYyLmDlS~Sm~ddl~~l~~lg~~l~~~~~~i 136 (426)
T PF00362_consen 66 ---------SDSDDVVQLSPQKVSLKLRPGEPVTFNVTVRPAEDYPVDLYYLMDLSYSMKDDLENLKSLGQDLAEEMRNI 136 (426)
T ss_dssp ---------TTSSS-BSEESSEEEEEEETTBEEEEEEEEEBSSS--EEEEEEEE-SGGGHHHHHHHCCCCHHHHHHHHTT
T ss_pred ---------cCCccceeeccceeEEEeecceeEEEEEEEeeccccceeEEEEeechhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 01246899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeEEeeEeecccccCccccCcccccCCC----CCCCCCcceeeeecCCccHHHHHHhccceeeccCCCCCcchHHHH
Q psy12966 157 TSNFRLGFGSFVDKVVMPYVSMVPKNLLEPC----AGCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAI 232 (741)
Q Consensus 157 t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc----~~c~~~f~f~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl 232 (741)
|++||||||+|||||++||++++|++|++|| ..|+|||+|||+|+||+|.++|.++|+++.||||+|+||||||||
T Consensus 137 t~~~~~GfGsfvdK~~~P~~~~~p~~l~~pc~~~~~~c~~~~~f~~~l~Lt~~~~~F~~~v~~~~is~n~D~PEgg~dal 216 (426)
T PF00362_consen 137 TSNFRLGFGSFVDKPVMPFVSTTPEKLKNPCPSKNPNCQPPFSFRHVLSLTDDITEFNEEVNKQKISGNLDAPEGGLDAL 216 (426)
T ss_dssp -SSEEEEEEEESSSSSTTTST-SSHCHHSTSCCTTS--B---SEEEEEEEES-HHHHHHHHHTS--B--SSSSBSHHHHH
T ss_pred CccceEechhhcccccCCcccCChhhhcCcccccCCCCCCCeeeEEeecccchHHHHHHhhhhccccCCCCCCccccchh
Confidence 9999999999999999999999999999999 579999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccE
Q psy12966 233 MQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINL 312 (741)
Q Consensus 233 ~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~ 312 (741)
||||||+++||||++|||||||+|||+||+|||||||||++||||+|||+.+|+|++++++|||||+||+++|.|+||+|
T Consensus 217 ~Qa~vC~~~igWr~~a~~llv~~TD~~fH~agDg~l~gi~~pnd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~~i~~ 296 (426)
T PF00362_consen 217 MQAAVCQEEIGWRNEARRLLVFSTDAGFHFAGDGKLAGIVKPNDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSENNINP 296 (426)
T ss_dssp HHHHH-HHHHT--STSEEEEEEEESS-B--TTGGGGGT--S---SS--BSTTSBBGGGGCS----HHHHHHHHHHTTEEE
T ss_pred eeeeecccccCcccCceEEEEEEcCCccccccccccceeeecCCCceEECCCCcccccccccCCCHHHHHHHHHHcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecchhhhHHHHhhcccCceeeeccCCcchHHHHHHHHhhhccceEEeeeCC-CCceEEEEEeecCCCCCCCCCCCC
Q psy12966 313 IFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKDGPSKPTAK 391 (741)
Q Consensus 313 Ifavt~~~~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI~~aY~~i~s~v~l~~~~-~~~~~v~~~s~C~~~~~~~~~~~~ 391 (741)
|||||+.++++|++|+++|+|+++|+|++||+|||+||++||++|+|+|+|+++. |++|+|+|+++|.++....+ +++
T Consensus 297 IFAVt~~~~~~Y~~L~~~i~~s~vg~L~~dSsNIv~LI~~aY~~i~s~V~L~~~~~p~~v~v~y~s~C~~~~~~~~-~~~ 375 (426)
T PF00362_consen 297 IFAVTKDVYSIYEELSNLIPGSSVGELSSDSSNIVQLIKEAYNKISSKVELKHDNAPDGVKVSYTSNCPNGSTVPG-TNE 375 (426)
T ss_dssp EEEEEGGGHHHHHHHHHHSTTEEEEEESTTSHTHHHHHHHHHHHHCTEEEEEECS--TTEEEEEEEEESSSEEEEC-CEE
T ss_pred EEEEchhhhhHHHHHhhcCCCceecccccCchhHHHHHHHHHHHHhheEEEEecCCCCcEEEEEEEEccCCcccCc-Ccc
Confidence 9999999999999999999999999999999999999999999999999999777 99999999999998765444 368
Q ss_pred CCCcccCcEEEEEEEEEeccCCCCCcccceEEEEEecccceeEEEecccCCCc
Q psy12966 392 CDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCEC 444 (741)
Q Consensus 392 C~~v~~g~~V~F~v~v~~~~Cp~~~~~~~~~~~I~~~g~~e~l~v~l~~~C~C 444 (741)
|+||++|++|+|+|+|++.+||..+.. ++|.|+|+||+|+|+|+|+++|+|
T Consensus 376 C~~V~iG~~V~F~VtVta~~Cp~~~~~--~~~~I~p~Gf~E~L~V~v~~iCdC 426 (426)
T PF00362_consen 376 CSNVKIGDTVTFNVTVTAKECPKEGSS--QTFIIRPVGFSEELTVNVEIICDC 426 (426)
T ss_dssp ECSE-TT-EEEEEEEEEESS-SSSSE---EEEEEEETTSS-EEEEEEEEE-S-
T ss_pred ccCEecCCEEEEEEEEEEecCCCCCCc--ceEEEEEccCCeEEEEEEEEecCC
Confidence 999999999999999999999987643 799999999999999999999888
No 4
>KOG1226|consensus
Probab=99.71 E-value=1.1e-16 Score=183.10 Aligned_cols=114 Identities=26% Similarity=0.598 Sum_probs=93.7
Q ss_pred CCCCCCCCCeEEeCceeeeCCCcc----CCcccccCCCCCCcCcccCccCCCCccccCCCceecCCCCccCCCCCceecC
Q psy12966 456 RNSPNCSGFGTFKCGLCECDQSHF----GRRCECDAESSQGITSTGCKADANSTMECSGRGNCLCNQKSLDNIVNVIISH 531 (741)
Q Consensus 456 ~~s~~Csg~G~c~cG~C~C~~G~~----G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~cG~C~C~~~~~~~~G~ 531 (741)
.+++.|||+|.|.||.|.|++... |.+|||+. ..|...++ .+|+|||+|.||+|+|.. +|+|.
T Consensus 511 ~~~~vCSgrG~C~CGqC~C~~~~~~~i~G~fCECDn--------fsC~r~~g--~lC~g~G~C~CG~CvC~~---GwtG~ 577 (783)
T KOG1226|consen 511 SDSPVCSGRGDCVCGQCVCHKPDNGKIYGKFCECDN--------FSCERHKG--VLCGGHGRCECGRCVCNP---GWTGS 577 (783)
T ss_pred CCCCCcCCCCcEeCCceEecCCCCCceeeeeeeccC--------cccccccC--cccCCCCeEeCCcEEcCC---CCccC
Confidence 345699999999999999999766 99999975 67988777 899999999999999954 79999
Q ss_pred cccccee------ecCCCC----CceeeecCceEecCC-ceeccc--cccCCCCccccCccccCCccccc-ccccc
Q psy12966 532 VIVTTEC------CVLDLN----TVGACVASAIVKTAG-LVQRVT--VAPLMTPVYLLREERCARARESV-SAVCA 593 (741)
Q Consensus 532 ~~~~Cec------C~~~~g----G~G~C~cg~C~C~~G-~~G~~~--~~~C~~~~~~~~~~~Csg~G~C~-cG~C~ 593 (741)
+ |+| |...+| |||+|.||+|+|... |+|+.. .++| + ..|..+..|+ |+.+.
T Consensus 578 ~---C~C~~std~C~~~~G~iCSGrG~C~Cg~C~C~~~~~sG~~CE~cptc--~------~~C~~~~~CveC~~~~ 642 (783)
T KOG1226|consen 578 A---CNCPLSTDTCESSDGQICSGRGTCECGRCKCTDPPYSGEFCEKCPTC--P------DPCAENKSCVECQAFE 642 (783)
T ss_pred C---CCCCCCCccccCCCCceeCCCceeeCCceEcCCCCcCcchhhcCCCC--C------Ccccccccchhhcccc
Confidence 9 999 877766 899999999999766 999431 2334 1 3499999996 44444
No 5
>PF08725 Integrin_b_cyt: Integrin beta cytoplasmic domain; InterPro: IPR014836 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. This entry represents the cytoplasmic domain of integrin beta subunits. ; GO: 0004872 receptor activity, 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion, 0007229 integrin-mediated signaling pathway, 0008305 integrin complex; PDB: 3G9W_C 2JF1_T 2BRQ_D 1MK9_E 1KUZ_B 2LJF_A 1MK7_C 2RN0_A 1M8O_B 2LJE_A ....
Probab=99.40 E-value=6.9e-14 Score=109.79 Aligned_cols=33 Identities=61% Similarity=0.924 Sum_probs=31.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHhcccCCCCCCCCC
Q psy12966 709 KILTSIHDRREFAKFEKERMLAKWDTKLNSLIY 741 (741)
Q Consensus 709 K~~~~i~DrrE~~kFekE~~~akw~~~~NPly~ 741 (741)
|||++|||||||+|||+|+++++|++++||||+
T Consensus 1 Kll~~i~DrrEy~kFe~E~~~akw~~~eNPlY~ 33 (47)
T PF08725_consen 1 KLLITIHDRREYAKFEKERKKAKWNKGENPLYK 33 (47)
T ss_dssp HHHHHHHHHCHCHHHHHHHHHTCCCCTTSTTEE
T ss_pred CEEEEEehHHHHHHHHHHHHHcCCCCCCCCccc
Confidence 789999999999999999999999999999995
No 6
>KOG1225|consensus
Probab=99.39 E-value=6e-13 Score=150.77 Aligned_cols=110 Identities=21% Similarity=0.463 Sum_probs=95.1
Q ss_pred CCCCCCCeEEeCceeeeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceecCCCCccCCCCCceecCccccce
Q psy12966 458 SPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLCNQKSLDNIVNVIISHVIVTTE 537 (741)
Q Consensus 458 s~~Csg~G~c~cG~C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~cG~C~C~~~~~~~~G~~~~~Ce 537 (741)
...|+++|.|.-|.|.|++||.|.+|+- ..|. ..||+||.|+.|+|+|.. +|+|+. |+
T Consensus 253 ~~~c~~~g~c~~G~CIC~~Gf~G~dC~e----------~~Cp------~~cs~~g~~~~g~CiC~~---g~~G~d---Cs 310 (525)
T KOG1225|consen 253 PGGCTGRGQCVEGRCICPPGFTGDDCDE----------LVCP------VDCSGGGVCVDGECICNP---GYSGKD---CS 310 (525)
T ss_pred CCCCcccceEeCCeEeCCCCCcCCCCCc----------ccCC------cccCCCceecCCEeecCC---Cccccc---cc
Confidence 3468899999999999999999999975 2475 239999999999999964 799999 99
Q ss_pred e--ecCCCCCceeeecCceEecCCceeccccccCCCCccccCccccCCccccccccccccccccccCCCCCccc
Q psy12966 538 C--CVLDLNTVGACVASAIVKTAGLVQRVTVAPLMTPVYLLREERCARARESVSAVCANVLKIAREDIPAGSAR 609 (741)
Q Consensus 538 c--C~~~~gG~G~C~cg~C~C~~G~~G~~~~~~C~~~~~~~~~~~Csg~G~C~cG~C~~~~~C~~~~~~gy~G~ 609 (741)
. ||.+..|||+|+-|+|+|++||+|..... . . |+++|.|+.| |+ | ..||.|.
T Consensus 311 ~~~cpadC~g~G~Ci~G~C~C~~Gy~G~~C~~---------~-~-C~~~g~cv~g-C~----C----~~Gw~G~ 364 (525)
T KOG1225|consen 311 IRRCPADCSGHGKCIDGECLCDEGYTGELCIQ---------R-A-CSGGGQCVNG-CK----C----KKGWRGP 364 (525)
T ss_pred cccCCccCCCCCcccCCceEeCCCCcCCcccc---------c-c-cCCCceeccC-ce----e----ccCccCC
Confidence 8 99888899999999999999999944111 1 3 8999999999 99 9 8899988
No 7
>PF07965 Integrin_B_tail: Integrin beta tail domain; InterPro: IPR012896 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. This entry represents the tail domain of the integrin beta subunit. It forms a four-stranded beta-sheet that contains parallel and anttparallel strands and faces an alpha helix found at the N terminus of this domain []. Interactions between the alpha-helix and the beta-sheet are mostly hydrophobic and involve a disulphide bond. The rear of the beta sheet is covered with a long A-B loop.; GO: 0004872 receptor activity, 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion, 0007229 integrin-mediated signaling pathway, 0008305 integrin complex; PDB: 3K71_H 3K6S_H 3K72_D 3IJE_B 1M1X_B 1U8C_B 2RN0_A 3FCS_B 1JV2_B 1L5G_B ....
Probab=99.34 E-value=7.7e-13 Score=117.49 Aligned_cols=68 Identities=37% Similarity=0.718 Sum_probs=57.4
Q ss_pred CCCCCceeeecccccccc--cc------------cCcCCCC-C---CCceeecCCCcEEEEEEE-EcCCCcEEEEEeccC
Q psy12966 618 VQEFKNCIQCQVLQDRTI--VR------------GGNEAKD-E---NLCVYFDEDECKFEYVYW-YDAQGKIHLRAQQER 678 (741)
Q Consensus 618 C~~~~~Cv~C~~~~~g~~--~~------------~v~~~~~-~---~~C~~~~~d~C~~~f~y~-~~~~~~~~i~v~~~~ 678 (741)
|+.+++||||++|++|++ .+ +|+++.. + ..|+++|+++|||+|+|. +++++++.|+|++++
T Consensus 1 C~~~~~CVeC~~f~tG~~~~~~~C~~~C~~~~~~~v~~~~~~~~~~~~C~~~De~dC~~~F~y~~~~~~~~~~v~V~~~~ 80 (87)
T PF07965_consen 1 CSEKKDCVECQAFKTGPLKDEKNCSENCKFEVITVVDELKKDEDKNVRCSFRDEDDCWFTFTYEQYDGNGKYVVYVQKER 80 (87)
T ss_dssp HCCTHHHHCCCTTSSSHHHHTT-STTTS-SEBEECCSSSSSSSSSSEEEEEEETTSEEEEEEEE-ECTTTEEEEEEESSE
T ss_pred CCCCccccCccccCcCCCCccCchhhhcCccccccccccccCCCccCccccCCCCCcEEEEEEEEeCCCCeEEEEEcccC
Confidence 788999999999999998 32 2333332 1 259999999999999999 888999999999999
Q ss_pred CCCCCCc
Q psy12966 679 ECPPHVY 685 (741)
Q Consensus 679 ~Cp~~~~ 685 (741)
+||++||
T Consensus 81 eCP~~pn 87 (87)
T PF07965_consen 81 ECPEPPN 87 (87)
T ss_dssp BSTSSSH
T ss_pred CCCCCcC
Confidence 9999986
No 8
>KOG1225|consensus
Probab=99.27 E-value=7.1e-12 Score=142.18 Aligned_cols=118 Identities=19% Similarity=0.381 Sum_probs=97.2
Q ss_pred eCceeeeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceecCCCCccCCCCCceecCcccccee--ecCCCCC
Q psy12966 468 KCGLCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLCNQKSLDNIVNVIISHVIVTTEC--CVLDLNT 545 (741)
Q Consensus 468 ~cG~C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~cG~C~C~~~~~~~~G~~~~~Cec--C~~~~gG 545 (741)
.+++|.|..+|+|+.|+- ..|. ..|+++|.|+-|+|.|+. +|+|.+ |.. ||...++
T Consensus 232 ~~~ic~c~~~~~g~~c~~----------~~C~------~~c~~~g~c~~G~CIC~~---Gf~G~d---C~e~~Cp~~cs~ 289 (525)
T KOG1225|consen 232 FDGICECPEGYFGPLCST----------IYCP------GGCTGRGQCVEGRCICPP---GFTGDD---CDELVCPVDCSG 289 (525)
T ss_pred cCceeecCCceeCCcccc----------ccCC------CCCcccceEeCCeEeCCC---CCcCCC---CCcccCCcccCC
Confidence 345889999999999873 3575 569999999999999965 799999 999 9988889
Q ss_pred ceeeecCceEecCCcee-ccccccCCCCccccCccccCCccccccccccccccccccCCCCCcccCCCCCcCCCCCCCce
Q psy12966 546 VGACVASAIVKTAGLVQ-RVTVAPLMTPVYLLREERCARARESVSAVCANVLKIAREDIPAGSARNARPVLEDVQEFKNC 624 (741)
Q Consensus 546 ~G~C~cg~C~C~~G~~G-~~~~~~C~~~~~~~~~~~Csg~G~C~cG~C~~~~~C~~~~~~gy~G~e~Cp~~~~C~~~~~C 624 (741)
||.|.-|+|+|.+||+| .++...|+ ..|+|||.|+-|+|. | ++||+|. .|.... |..+..|
T Consensus 290 ~g~~~~g~CiC~~g~~G~dCs~~~cp--------adC~g~G~Ci~G~C~----C----~~Gy~G~-~C~~~~-C~~~g~c 351 (525)
T KOG1225|consen 290 GGVCVDGECICNPGYSGKDCSIRRCP--------ADCSGHGKCIDGECL----C----DEGYTGE-LCIQRA-CSGGGQC 351 (525)
T ss_pred CceecCCEeecCCCccccccccccCC--------ccCCCCCcccCCceE----e----CCCCcCC-cccccc-cCCCcee
Confidence 99999999999999999 78778784 369999999999999 9 9999995 443322 4444444
Q ss_pred e
Q psy12966 625 I 625 (741)
Q Consensus 625 v 625 (741)
+
T Consensus 352 v 352 (525)
T KOG1225|consen 352 V 352 (525)
T ss_pred c
Confidence 4
No 9
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.17 E-value=7.7e-10 Score=106.74 Aligned_cols=153 Identities=16% Similarity=0.260 Sum_probs=110.6
Q ss_pred cceeEEeecCCCCh-HHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeee
Q psy12966 122 PVDLYYLMDLSNSM-RDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVM 200 (741)
Q Consensus 122 pvDly~LmDlS~SM-~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l 200 (741)
|+|++||+|.|+|| ...++.++..+..++..+.......++|+..|.+....+ .
T Consensus 1 ~~~v~l~vD~S~SM~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~-------------------------~ 55 (177)
T smart00327 1 PLDVVFLLDGSGSMGPNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVL-------------------------F 55 (177)
T ss_pred CccEEEEEeCCCccchHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEE-------------------------E
Confidence 78999999999999 999999999999999999887789999999999953221 2
Q ss_pred c--CCccHHHHHHhccceee--ccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCC
Q psy12966 201 S--LSQDTSRFSAQVKGANV--SGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPND 276 (741)
Q Consensus 201 ~--lT~d~~~F~~~v~~~~i--sgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnD 276 (741)
+ .+++.+.+...++.+.. +|+-|..++ +.+.+..+. ....+||.+++++||++||...+..
T Consensus 56 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-l~~~~~~~~-~~~~~~~~~~~~~iviitDg~~~~~------------- 120 (177)
T smart00327 56 PLNDSRSKDALLEALASLSYKLGGGTNLGAA-LQYALENLF-SKSAGSRRGAPKVLILITDGESNDG------------- 120 (177)
T ss_pred cccccCCHHHHHHHHHhcCCCCCCCchHHHH-HHHHHHHhc-CcCCCCCCCCCeEEEEEcCCCCCCC-------------
Confidence 2 47888999999998885 444444443 333333332 2346799889999999999875531
Q ss_pred CcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecc--hhhhHHHHhhcccC
Q psy12966 277 GLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAE--QIGVYERLKTHIEG 333 (741)
Q Consensus 277 g~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~--~~~~Y~~l~~~i~g 333 (741)
..+.+..+.+.+++|.+++..... .....+.++...++
T Consensus 121 -------------------~~~~~~~~~~~~~~i~i~~i~~~~~~~~~~l~~~~~~~~~ 160 (177)
T smart00327 121 -------------------GDLLKAAKELKRSGVKVFVVGVGNDVDEEELKKLASAPGG 160 (177)
T ss_pred -------------------ccHHHHHHHHHHCCCEEEEEEccCccCHHHHHHHhCCCcc
Confidence 247888899999997766555544 33344444444444
No 10
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.00 E-value=1.1e-08 Score=97.64 Aligned_cols=132 Identities=18% Similarity=0.283 Sum_probs=98.7
Q ss_pred ceeEEeecCCCChHH-hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeec
Q psy12966 123 VDLYYLMDLSNSMRD-DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMS 201 (741)
Q Consensus 123 vDly~LmDlS~SM~d-dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~ 201 (741)
+||+||||.|+||.. +++.++..+..|+..+.....+.++|+-.|.+++.. ..+
T Consensus 1 ~di~~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~-------------------------~~~ 55 (161)
T cd01450 1 LDIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRV-------------------------EFS 55 (161)
T ss_pred CcEEEEEeCCCCcCHHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceE-------------------------EEE
Confidence 699999999999999 789999999999988887778999999999986332 123
Q ss_pred CCc--cHHHHHHhccceeeccCCCCCcchHHHHHHHHhcccccccc----CCccEEEEEecCCCCCcCCCCCccceecCC
Q psy12966 202 LSQ--DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWR----DRARRLLVFSTDAEFHHAGDGKLGGIVKPN 275 (741)
Q Consensus 202 lT~--d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR----~~a~rliv~~TDa~~H~agDg~L~Gi~~pn 275 (741)
+++ +..++.+.++.+...++ .--...+||..|+ +.+.++ .+++++|||+||...|..
T Consensus 56 ~~~~~~~~~~~~~i~~~~~~~~--~~t~~~~al~~a~---~~~~~~~~~~~~~~~~iiliTDG~~~~~------------ 118 (161)
T cd01450 56 LNDYKSKDDLLKAVKNLKYLGG--GGTNTGKALQYAL---EQLFSESNARENVPKVIIVLTDGRSDDG------------ 118 (161)
T ss_pred CCCCCCHHHHHHHHHhcccCCC--CCccHHHHHHHHH---HHhcccccccCCCCeEEEEECCCCCCCC------------
Confidence 333 37788888887765443 1234566666666 566665 489999999999975532
Q ss_pred CCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEE
Q psy12966 276 DGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAV 316 (741)
Q Consensus 276 Dg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifav 316 (741)
+++.++.+.+++++|.++...
T Consensus 119 --------------------~~~~~~~~~~~~~~v~v~~i~ 139 (161)
T cd01450 119 --------------------GDPKEAAAKLKDEGIKVFVVG 139 (161)
T ss_pred --------------------cchHHHHHHHHHCCCEEEEEe
Confidence 146788999999988876433
No 11
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=98.97 E-value=4e-08 Score=105.16 Aligned_cols=207 Identities=16% Similarity=0.218 Sum_probs=138.8
Q ss_pred ceeecceeEEEEEeeCccEEEEEEEeccCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecc
Q psy12966 91 AVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDK 170 (741)
Q Consensus 91 ~~qi~Pq~v~~~LR~G~~~~~~~~~~~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk 170 (741)
+..|++..++| +.-|.++.|.. |+..+..|++++||||.|+||..++..+|+.+..+++.+ +..+-++|+-.|.+.
T Consensus 24 v~~L~~~df~v-~e~g~~q~i~~-f~~~~~~p~~vvlvlD~SgSM~~~~~~a~~a~~~~l~~~--l~~~d~v~lv~f~~~ 99 (296)
T TIGR03436 24 VTGLTKDDFTV-LEDGKPQTIAS-FRRETDLPLTVGLVIDTSGSMRNDLDRARAAAIRFLKTV--LRPNDRVFVVTFNTR 99 (296)
T ss_pred CCCCChHHeEE-EECCeEEEEEE-EecCCCCCceEEEEEECCCCchHHHHHHHHHHHHHHHhh--CCCCCEEEEEEeCCc
Confidence 55688888887 45677777664 555556799999999999999999999998888887653 346899999988875
Q ss_pred cccCccccCcccccCCCCCCCCCcceeeeecCCccHHHHHHhccceeecc-----------CCCCCcchHHHHHHHHhcc
Q psy12966 171 VVMPYVSMVPKNLLEPCAGCAAPYGYHNVMSLSQDTSRFSAQVKGANVSG-----------NLDGPEGGFDAIMQAIVCK 239 (741)
Q Consensus 171 ~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~lT~d~~~F~~~v~~~~isg-----------n~D~PE~~ldAl~qa~vC~ 239 (741)
+. ...++|.|...+.+.++.+.... +.+.....+|||..|+.
T Consensus 100 ~~-------------------------~~~~~t~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~-- 152 (296)
T TIGR03436 100 LR-------------------------LLQDFTSDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAAL-- 152 (296)
T ss_pred ee-------------------------EeecCCCCHHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHH--
Confidence 21 13467889999999999876521 11223446677655542
Q ss_pred ccccccCC----ccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEE
Q psy12966 240 EEIGWRDR----ARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFA 315 (741)
Q Consensus 240 ~~igWR~~----a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifa 315 (741)
++-++.. .+|.||++||..-+ .+ -.++.++.+.+.+++|. ||+
T Consensus 153 -~~~~~~~~~~p~rk~iIllTDG~~~----------------------~~---------~~~~~~~~~~~~~~~v~-vy~ 199 (296)
T TIGR03436 153 -EQLANALAGIPGRKALIVISDGGDN----------------------RS---------RDTLERAIDAAQRADVA-IYS 199 (296)
T ss_pred -HHHHHhhcCCCCCeEEEEEecCCCc----------------------ch---------HHHHHHHHHHHHHcCCE-EEE
Confidence 2222221 47899999996311 00 01467888888888875 566
Q ss_pred Eecc----------------hhhhHHHHhhcccCceeeeccCCcchHHHHHHHHhhhccceEEee
Q psy12966 316 VTAE----------------QIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMK 364 (741)
Q Consensus 316 vt~~----------------~~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI~~aY~~i~s~v~l~ 364 (741)
|.-. .....++|++.-+|... .. +..++.+.+.+..+.+.+.-.|.
T Consensus 200 I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~--~~-~~~~l~~~f~~i~~~~~~~Y~l~ 261 (296)
T TIGR03436 200 IDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAF--YV-NSNDLDGAFAQIAEELRSQYLIG 261 (296)
T ss_pred eccCccccCCcccccccCCCcHHHHHHHHHHhCCeEe--cc-cCccHHHHHHHHHHHHhheEEEE
Confidence 5431 12345666665555432 22 67778887777777777765553
No 12
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=98.97 E-value=5.9e-09 Score=100.11 Aligned_cols=161 Identities=23% Similarity=0.292 Sum_probs=106.7
Q ss_pred eeEEeecCCCChHHh------HHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCccee
Q psy12966 124 DLYYLMDLSNSMRDD------KDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYH 197 (741)
Q Consensus 124 Dly~LmDlS~SM~dd------l~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~ 197 (741)
|++||||.|+||.+. ++.+|.....|++.+ . .-|+|+..|.+.+ +
T Consensus 1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~v~l~~f~~~~-------------------------~ 51 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANL---P-GDRVGLVSFSDSS-------------------------R 51 (172)
T ss_dssp EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHH---T-TSEEEEEEESTSC-------------------------E
T ss_pred CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHC---C-CCEEEEEEecccc-------------------------c
Confidence 899999999999998 888888888888774 3 3499999999852 1
Q ss_pred eeecCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCC
Q psy12966 198 NVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDG 277 (741)
Q Consensus 198 ~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg 277 (741)
..+++|.|.+.|.+.++++...+.....+...+||..|+ +.+.|.+..+|.|||+||+..+
T Consensus 52 ~~~~~t~~~~~~~~~l~~~~~~~~~~~~t~~~~al~~a~---~~~~~~~~~~~~iv~iTDG~~~---------------- 112 (172)
T PF13519_consen 52 TLSPLTSDKDELKNALNKLSPQGMPGGGTNLYDALQEAA---KMLASSDNRRRAIVLITDGEDN---------------- 112 (172)
T ss_dssp EEEEEESSHHHHHHHHHTHHHHG--SSS--HHHHHHHHH---HHHHC-SSEEEEEEEEES-TTH----------------
T ss_pred ccccccccHHHHHHHhhcccccccCccCCcHHHHHHHHH---HHHHhCCCCceEEEEecCCCCC----------------
Confidence 245788999999999999886533344466777877777 4666665689999999997422
Q ss_pred cccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecc---hhhhHHHHhhcccCceeeeccCCcchHHHHHH
Q psy12966 278 LCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAE---QIGVYERLKTHIEGSSSGTLTNDSSNVVDLVK 351 (741)
Q Consensus 278 ~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~---~~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI~ 351 (741)
++.-+..+.+++.+|.+.+..... ....++.+++.-+|.... ...+...+.++++
T Consensus 113 ------------------~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~l~~la~~tgG~~~~-~~~~~~~l~~~~~ 170 (172)
T PF13519_consen 113 ------------------SSDIEAAKALKQQGITIYTVGIGSDSDANEFLQRLAEATGGRYFH-VDNDPEDLDDAFQ 170 (172)
T ss_dssp ------------------CHHHHHHHHHHCTTEEEEEEEES-TT-EHHHHHHHHHHTEEEEEE-E-SSSHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHcCCeEEEEEECCCccHHHHHHHHHHhcCCEEEE-ecCCHHHHHHHHh
Confidence 233457777888887754333332 224567777666555443 2344555555443
No 13
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=98.95 E-value=1.1e-08 Score=105.35 Aligned_cols=149 Identities=20% Similarity=0.252 Sum_probs=97.4
Q ss_pred CcceeEEeecCCCChH-HhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeee
Q psy12966 121 YPVDLYYLMDLSNSMR-DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNV 199 (741)
Q Consensus 121 ~pvDly~LmDlS~SM~-ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~ 199 (741)
.|+||+||+|.|+||. ++++.+|+.+..|++.|.--....|+|+..|.+.+.. .
T Consensus 1 ~~~DlvfllD~S~Sm~~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~-------------------------~ 55 (224)
T cd01475 1 GPTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQ-------------------------E 55 (224)
T ss_pred CCccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeE-------------------------E
Confidence 4899999999999998 4799999999999988764445789999999987432 2
Q ss_pred ecCC--ccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCc---cEEEEEecCCCCCcCCCCCccceecC
Q psy12966 200 MSLS--QDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRA---RRLLVFSTDAEFHHAGDGKLGGIVKP 274 (741)
Q Consensus 200 l~lT--~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a---~rliv~~TDa~~H~agDg~L~Gi~~p 274 (741)
++|+ .+.+.+.+.|+.+.-.|+.-....+|+.+++.+. ...-|||+++ .|+||++||...+.
T Consensus 56 ~~l~~~~~~~~l~~~i~~i~~~~~~t~tg~AL~~a~~~~~-~~~~g~r~~~~~~~kvvillTDG~s~~------------ 122 (224)
T cd01475 56 FPLGRFKSKADLKRAVRRMEYLETGTMTGLAIQYAMNNAF-SEAEGARPGSERVPRVGIVVTDGRPQD------------ 122 (224)
T ss_pred ecccccCCHHHHHHHHHhCcCCCCCChHHHHHHHHHHHhC-ChhcCCCCCCCCCCeEEEEEcCCCCcc------------
Confidence 3344 3456777888776543332222222332222211 1235788876 89999999985210
Q ss_pred CCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecchhhhHHHHhhcc
Q psy12966 275 NDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHI 331 (741)
Q Consensus 275 nDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~~~~~Y~~l~~~i 331 (741)
++.++.+.|++.+|. ||+|.-... ..+.|..+-
T Consensus 123 ----------------------~~~~~a~~lk~~gv~-i~~VgvG~~-~~~~L~~ia 155 (224)
T cd01475 123 ----------------------DVSEVAAKARALGIE-MFAVGVGRA-DEEELREIA 155 (224)
T ss_pred ----------------------cHHHHHHHHHHCCcE-EEEEeCCcC-CHHHHHHHh
Confidence 256778889999976 566643222 234454443
No 14
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.94 E-value=1.1e-08 Score=102.45 Aligned_cols=135 Identities=18% Similarity=0.242 Sum_probs=96.4
Q ss_pred cceeEEeecCCCChH-HhHHHHHHHHHHHHHHHHh-----h-cCceeEEeeEeecccccCccccCcccccCCCCCCCCCc
Q psy12966 122 PVDLYYLMDLSNSMR-DDKDRLSALGDQLSASMQE-----V-TSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPY 194 (741)
Q Consensus 122 pvDly~LmDlS~SM~-ddl~~lk~l~~~l~~~l~~-----~-t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f 194 (741)
|+||+||||.|+||+ ++++.+|..+..+++.|.. + ..+.|+|+..|.+.+.
T Consensus 2 ~~dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~---------------------- 59 (186)
T cd01480 2 PVDITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQE---------------------- 59 (186)
T ss_pred CeeEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCce----------------------
Confidence 799999999999999 8899999999999988854 2 3468999999998632
Q ss_pred ceeeeecCC---ccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccc--cccCCccEEEEEecCCCCCcCCCCCcc
Q psy12966 195 GYHNVMSLS---QDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEI--GWRDRARRLLVFSTDAEFHHAGDGKLG 269 (741)
Q Consensus 195 ~f~~~l~lT---~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~i--gWR~~a~rliv~~TDa~~H~agDg~L~ 269 (741)
..++|+ .+...+.+.|+.+...|+. -...+||..|. +.+ +.|++++|+|||+||......
T Consensus 60 ---~~~~l~~~~~~~~~l~~~i~~l~~~gg~---T~~~~AL~~a~---~~l~~~~~~~~~~~iillTDG~~~~~------ 124 (186)
T cd01480 60 ---VEAGFLRDIRNYTSLKEAVDNLEYIGGG---TFTDCALKYAT---EQLLEGSHQKENKFLLVITDGHSDGS------ 124 (186)
T ss_pred ---eeEecccccCCHHHHHHHHHhCccCCCC---ccHHHHHHHHH---HHHhccCCCCCceEEEEEeCCCcCCC------
Confidence 123455 6889999999988643332 23345555554 233 457789999999999863211
Q ss_pred ceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEec
Q psy12966 270 GIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTA 318 (741)
Q Consensus 270 Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~ 318 (741)
+-+.+.+..+.+++++|. ||+|.-
T Consensus 125 ------------------------~~~~~~~~~~~~~~~gi~-i~~vgi 148 (186)
T cd01480 125 ------------------------PDGGIEKAVNEADHLGIK-IFFVAV 148 (186)
T ss_pred ------------------------cchhHHHHHHHHHHCCCE-EEEEec
Confidence 012356677788888888 566653
No 15
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=98.90 E-value=3.5e-08 Score=96.16 Aligned_cols=106 Identities=18% Similarity=0.201 Sum_probs=79.1
Q ss_pred ceeEEeecCCCChHH-hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeec
Q psy12966 123 VDLYYLMDLSNSMRD-DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMS 201 (741)
Q Consensus 123 vDly~LmDlS~SM~d-dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~ 201 (741)
+||+||||.|+||.. +++.+|..+..|++.|.......|+|+..|.+++. -.++
T Consensus 1 ~Dvv~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~-------------------------~~~~ 55 (164)
T cd01472 1 ADIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPR-------------------------TEFY 55 (164)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCcee-------------------------EEEe
Confidence 699999999999999 88888888888888776444578999999998632 1234
Q ss_pred CC--ccHHHHHHhccceeeccCCCCCcchHHHHHHHHhcccccc-----ccCCccEEEEEecCCC
Q psy12966 202 LS--QDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIG-----WRDRARRLLVFSTDAE 259 (741)
Q Consensus 202 lT--~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~ig-----WR~~a~rliv~~TDa~ 259 (741)
|+ .|.+.+.+.++.+...|+. -..-+||.+|. +.+. .|++++|+|||+||..
T Consensus 56 ~~~~~~~~~~~~~l~~l~~~~g~---T~~~~al~~a~---~~l~~~~~~~~~~~~~~iiliTDG~ 114 (164)
T cd01472 56 LNTYRSKDDVLEAVKNLRYIGGG---TNTGKALKYVR---ENLFTEASGSREGVPKVLVVITDGK 114 (164)
T ss_pred cCCCCCHHHHHHHHHhCcCCCCC---chHHHHHHHHH---HHhCCcccCCCCCCCEEEEEEcCCC
Confidence 55 7788899988887753332 23556666665 3444 3678899999999983
No 16
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=98.88 E-value=3.3e-08 Score=98.27 Aligned_cols=111 Identities=20% Similarity=0.251 Sum_probs=80.3
Q ss_pred ceeEEeecCCCChHH-hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeec
Q psy12966 123 VDLYYLMDLSNSMRD-DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMS 201 (741)
Q Consensus 123 vDly~LmDlS~SM~d-dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~ 201 (741)
+||+||+|.|+||.. +++.+|+.+..|++.|..-....|+|+..|.+.+..- ++
T Consensus 1 ~Di~fvlD~S~S~~~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~-------------------------~~ 55 (177)
T cd01469 1 MDIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTE-------------------------FT 55 (177)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEE-------------------------Ee
Confidence 699999999999996 8999999999999888755568999999999974322 22
Q ss_pred CCc--cHHHHHHhccceeeccCCCCCcchHHHHHHHHh--ccccccccCCccEEEEEecCCCCC
Q psy12966 202 LSQ--DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIV--CKEEIGWRDRARRLLVFSTDAEFH 261 (741)
Q Consensus 202 lT~--d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~v--C~~~igWR~~a~rliv~~TDa~~H 261 (741)
|++ +...+.++++.+.-.++. -...+||..|.- =...-|||++++|++|++||...|
T Consensus 56 l~~~~~~~~~~~~i~~~~~~~g~---T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~ 116 (177)
T cd01469 56 LNEYRTKEEPLSLVKHISQLLGL---TNTATAIQYVVTELFSESNGARKDATKVLVVITDGESH 116 (177)
T ss_pred cCccCCHHHHHHHHHhCccCCCC---ccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCC
Confidence 222 345667777765422322 455667655541 011348999999999999999865
No 17
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.86 E-value=5.6e-08 Score=90.97 Aligned_cols=148 Identities=16% Similarity=0.260 Sum_probs=104.9
Q ss_pred ceeEEeecCCCCh-HHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeec
Q psy12966 123 VDLYYLMDLSNSM-RDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMS 201 (741)
Q Consensus 123 vDly~LmDlS~SM-~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~ 201 (741)
+||+||+|.|+|| .+.++.++..+..++..+.......++|+..|.+.+.. .++
T Consensus 1 ~~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~-------------------------~~~ 55 (161)
T cd00198 1 ADIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARV-------------------------VLP 55 (161)
T ss_pred CcEEEEEeCCCCcCcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccce-------------------------eec
Confidence 5899999999999 88999999999999999988878999999999984221 233
Q ss_pred CCc--cHHHHHHhccceee-ccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCc
Q psy12966 202 LSQ--DTSRFSAQVKGANV-SGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGL 278 (741)
Q Consensus 202 lT~--d~~~F~~~v~~~~i-sgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~ 278 (741)
++. +...+.+.++.+.. .++......++.+.++.+... . +....|+||++||...|...
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~al~~~~~~~~~~---~-~~~~~~~lvvitDg~~~~~~-------------- 117 (161)
T cd00198 56 LTTDTDKADLLEAIDALKKGLGGGTNIGAALRLALELLKSA---K-RPNARRVIILLTDGEPNDGP-------------- 117 (161)
T ss_pred ccccCCHHHHHHHHHhcccCCCCCccHHHHHHHHHHHhccc---C-CCCCceEEEEEeCCCCCCCc--------------
Confidence 443 67788888887775 455555555666655555211 1 57789999999998755421
Q ss_pred ccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEec--chhhhHHHHhhc
Q psy12966 279 CHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTA--EQIGVYERLKTH 330 (741)
Q Consensus 279 Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~--~~~~~Y~~l~~~ 330 (741)
..+....+.+++++|...+.... .....++.|...
T Consensus 118 -----------------~~~~~~~~~~~~~~v~v~~v~~g~~~~~~~l~~l~~~ 154 (161)
T cd00198 118 -----------------ELLAEAARELRKLGITVYTIGIGDDANEDELKEIADK 154 (161)
T ss_pred -----------------chhHHHHHHHHHcCCEEEEEEcCCCCCHHHHHHHhcc
Confidence 13566788888888886544444 344455555543
No 18
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.84 E-value=4.1e-08 Score=96.01 Aligned_cols=132 Identities=15% Similarity=0.222 Sum_probs=93.4
Q ss_pred ceeEEeecCCCChH-HhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeec
Q psy12966 123 VDLYYLMDLSNSMR-DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMS 201 (741)
Q Consensus 123 vDly~LmDlS~SM~-ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~ 201 (741)
+|++||+|.|+||. ..++.+|+.+..|++.|.-...+.|+|+..|.+++... ++
T Consensus 1 ~Dv~~vlD~S~Sm~~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~-------------------------~~ 55 (164)
T cd01482 1 ADIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTE-------------------------FD 55 (164)
T ss_pred CCEEEEEeCCCCcChhhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEE-------------------------Ee
Confidence 59999999999997 58999999999999888544568999999999974322 12
Q ss_pred CC--ccHHHHHHhccceeeccCCCCCcchHHHHHHHHh--ccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCC
Q psy12966 202 LS--QDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIV--CKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDG 277 (741)
Q Consensus 202 lT--~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~v--C~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg 277 (741)
|+ .+...+.+.++++...|+.- ..-+||..|.. =...-|||++++|+||++||..++.
T Consensus 56 l~~~~~~~~l~~~l~~~~~~~g~T---~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~--------------- 117 (164)
T cd01482 56 LNAYTSKEDVLAAIKNLPYKGGNT---RTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQD--------------- 117 (164)
T ss_pred cCCCCCHHHHHHHHHhCcCCCCCC---hHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCc---------------
Confidence 22 35677788888776544422 24445544331 0123589999999999999986321
Q ss_pred cccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEe
Q psy12966 278 LCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVT 317 (741)
Q Consensus 278 ~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt 317 (741)
.+.+.++.|++.+|. ||+|.
T Consensus 118 -------------------~~~~~a~~lk~~gi~-i~~ig 137 (164)
T cd01482 118 -------------------DVELPARVLRNLGVN-VFAVG 137 (164)
T ss_pred -------------------hHHHHHHHHHHCCCE-EEEEe
Confidence 145678899999986 55554
No 19
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=98.80 E-value=1.6e-07 Score=94.39 Aligned_cols=163 Identities=15% Similarity=0.182 Sum_probs=111.4
Q ss_pred ceeEEeecCCCChH------HhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcce
Q psy12966 123 VDLYYLMDLSNSMR------DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGY 196 (741)
Q Consensus 123 vDly~LmDlS~SM~------ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f 196 (741)
.||++++|+|.||. +=|+..|....+|++.+-..-+.-|+|+..|.+. .+|
T Consensus 4 r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~--~a~--------------------- 60 (183)
T cd01453 4 RHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNG--RAE--------------------- 60 (183)
T ss_pred eEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCC--ccE---------------------
Confidence 48999999999999 7899999999999987755555679999999542 111
Q ss_pred eeeecCCccHHHHHHhccce-eeccCCCCCcchHHHHHHHHhccccccccCC--ccEEEEEecCCCCCcCCCCCccceec
Q psy12966 197 HNVMSLSQDTSRFSAQVKGA-NVSGNLDGPEGGFDAIMQAIVCKEEIGWRDR--ARRLLVFSTDAEFHHAGDGKLGGIVK 273 (741)
Q Consensus 197 ~~~l~lT~d~~~F~~~v~~~-~isgn~D~PE~~ldAl~qa~vC~~~igWR~~--a~rliv~~TDa~~H~agDg~L~Gi~~ 273 (741)
-+.|||.|...|...++.. ...|+ -+..+||.+|. +.+.+++. .+|+|||+||..-+..
T Consensus 61 -~~~PlT~D~~~~~~~L~~~~~~~G~----t~l~~aL~~A~---~~l~~~~~~~~~~iiil~sd~~~~~~---------- 122 (183)
T cd01453 61 -KLTDLTGNPRKHIQALKTARECSGE----PSLQNGLEMAL---ESLKHMPSHGSREVLIIFSSLSTCDP---------- 122 (183)
T ss_pred -EEECCCCCHHHHHHHhhcccCCCCc----hhHHHHHHHHH---HHHhcCCccCceEEEEEEcCCCcCCh----------
Confidence 3688999999999999876 22232 23566666665 45555432 4678888887431110
Q ss_pred CCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecchhhhHHHHhhcccCceeeeccCCcchHHHHH
Q psy12966 274 PNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLV 350 (741)
Q Consensus 274 pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~~~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI 350 (741)
..+.++.+++++++|.+.+.....-....+++++.-+|...- ..|...+-+++
T Consensus 123 ----------------------~~~~~~~~~l~~~~I~v~~IgiG~~~~~L~~ia~~tgG~~~~--~~~~~~l~~~~ 175 (183)
T cd01453 123 ----------------------GNIYETIDKLKKENIRVSVIGLSAEMHICKEICKATNGTYKV--ILDETHLKELL 175 (183)
T ss_pred ----------------------hhHHHHHHHHHHcCcEEEEEEechHHHHHHHHHHHhCCeeEe--eCCHHHHHHHH
Confidence 135678999999998765444444445677888877776553 34454444433
No 20
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.80 E-value=1.2e-07 Score=94.26 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=72.2
Q ss_pred ceeEEeecCCCChHHh--HHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeee
Q psy12966 123 VDLYYLMDLSNSMRDD--KDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVM 200 (741)
Q Consensus 123 vDly~LmDlS~SM~dd--l~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l 200 (741)
+||+||+|.|+||... ++.+|..+..+++.+.-...+.|+|+..|.+.+.. .+
T Consensus 1 ~Dv~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~-------------------------~~ 55 (186)
T cd01471 1 LDLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKE-------------------------LI 55 (186)
T ss_pred CcEEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceE-------------------------EE
Confidence 6999999999999966 78999999999888865557899999999986322 12
Q ss_pred cCC----ccHHH---HHHhccceeeccCCCCCcchHHHHHHHHhcccc-ccccCCccEEEEEecCCCC
Q psy12966 201 SLS----QDTSR---FSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEE-IGWRDRARRLLVFSTDAEF 260 (741)
Q Consensus 201 ~lT----~d~~~---F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~-igWR~~a~rliv~~TDa~~ 260 (741)
+|+ .+... +.+.+......|+.-. ..+||.+|.-=-.. -++|+++.++|||+||...
T Consensus 56 ~l~~~~~~~~~~~~~~i~~l~~~~~~~G~T~---l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~ 120 (186)
T cd01471 56 RLSSPNSTNKDLALNAIRALLSLYYPNGSTN---TTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIP 120 (186)
T ss_pred ECCCccccchHHHHHHHHHHHhCcCCCCCcc---HHHHHHHHHHHhhccCCCcccCceEEEEEccCCC
Confidence 222 23444 3333333322233222 33444444311012 3799999999999999874
No 21
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=98.80 E-value=2.1e-07 Score=92.94 Aligned_cols=168 Identities=15% Similarity=0.221 Sum_probs=97.6
Q ss_pred CcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeee
Q psy12966 121 YPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVM 200 (741)
Q Consensus 121 ~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l 200 (741)
.++||+||+|.|+||......++..+..|++.+. .++.|+|+..|.+.+ +-++
T Consensus 3 ~~~Dvv~llD~SgSm~~~~~~~~~~~~~l~~~~~--~~~~rvglv~Fs~~~-------------------------~~~~ 55 (185)
T cd01474 3 GHFDLYFVLDKSGSVAANWIEIYDFVEQLVDRFN--SPGLRFSFITFSTRA-------------------------TKIL 55 (185)
T ss_pred CceeEEEEEeCcCchhhhHHHHHHHHHHHHHHcC--CCCcEEEEEEecCCc-------------------------eEEE
Confidence 4799999999999999887777777777777763 356999999998752 1245
Q ss_pred cCCccHHHHHHhc---cceeeccCCCCCcchHHHHHHHHh--ccccccccCCccEEEEEecCCCCCcCCCCCccceecCC
Q psy12966 201 SLSQDTSRFSAQV---KGANVSGNLDGPEGGFDAIMQAIV--CKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPN 275 (741)
Q Consensus 201 ~lT~d~~~F~~~v---~~~~isgn~D~PE~~ldAl~qa~v--C~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pn 275 (741)
+||++.+...+.+ +.+...|+ -...+||..|.- =....+.|+.+ |+|||+||...|..+
T Consensus 56 ~l~~~~~~~~~~l~~l~~~~~~g~----T~~~~aL~~a~~~l~~~~~~~r~~~-~~villTDG~~~~~~----------- 119 (185)
T cd01474 56 PLTDDSSAIIKGLEVLKKVTPSGQ----TYIHEGLENANEQIFNRNGGGRETV-SVIIALTDGQLLLNG----------- 119 (185)
T ss_pred eccccHHHHHHHHHHHhccCCCCC----CcHHHHHHHHHHHHHhhccCCCCCC-eEEEEEcCCCcCCCC-----------
Confidence 6676655544443 33322222 123445444431 01234566555 899999999754211
Q ss_pred CCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecchhhhHHHHhhcccC-ceeeeccCCcchHHHHHHH
Q psy12966 276 DGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIEG-SSSGTLTNDSSNVVDLVKD 352 (741)
Q Consensus 276 Dg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~~~~~Y~~l~~~i~g-s~vg~L~~dSsNiv~lI~~ 352 (741)
.+...+..+.|++++| .||+|.-..++ .+.|..+-.. ..+-.+..+..++..++.+
T Consensus 120 -------------------~~~~~~~a~~l~~~gv-~i~~vgv~~~~-~~~L~~iA~~~~~~f~~~~~~~~l~~~~~~ 176 (185)
T cd01474 120 -------------------HKYPEHEAKLSRKLGA-IVYCVGVTDFL-KSQLINIADSKEYVFPVTSGFQALSGIIES 176 (185)
T ss_pred -------------------CcchHHHHHHHHHcCC-EEEEEeechhh-HHHHHHHhCCCCeeEecCccHHHHHHHHHH
Confidence 1123445667888888 56666532222 2334443321 1233345566666554433
No 22
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=98.80 E-value=1.1e-07 Score=92.43 Aligned_cols=113 Identities=16% Similarity=0.291 Sum_probs=80.0
Q ss_pred eeEEeecCCCChHH-hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeecC
Q psy12966 124 DLYYLMDLSNSMRD-DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMSL 202 (741)
Q Consensus 124 Dly~LmDlS~SM~d-dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~l 202 (741)
||+||+|.|+||.. +++.+|+....|++.+.......|+|+.+|.+.+.. .++|
T Consensus 1 DivflvD~S~sm~~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~-------------------------~~~~ 55 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARV-------------------------LFSL 55 (178)
T ss_dssp EEEEEEE-STTSCHHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEE-------------------------EEET
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHHhhhccccccccceeeeeccccc-------------------------cccc
Confidence 89999999999997 999999999999999987778999999999996432 2344
Q ss_pred Cc--cHHHHHHhc-cceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCc
Q psy12966 203 SQ--DTSRFSAQV-KGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHH 262 (741)
Q Consensus 203 T~--d~~~F~~~v-~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~ 262 (741)
++ +..++...+ ......++.=.-..+|..+++-.. ....|+|++++|+||++||..++.
T Consensus 56 ~~~~~~~~~~~~i~~~~~~~~g~t~~~~aL~~a~~~l~-~~~~~~r~~~~~~iiliTDG~~~~ 117 (178)
T PF00092_consen 56 TDYQSKNDLLNAINDSIPSSGGGTNLGAALKFAREQLF-SSNNGGRPNSPKVIILITDGNSND 117 (178)
T ss_dssp TSHSSHHHHHHHHHTTGGCCBSSB-HHHHHHHHHHHTT-SGGGTTGTTSEEEEEEEESSSSSS
T ss_pred ccccccccccccccccccccchhhhHHHHHhhhhhccc-ccccccccccccceEEEEeecccC
Confidence 44 567888887 554433332222223333333321 114579999999999999988553
No 23
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=98.73 E-value=1.7e-07 Score=90.92 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=76.5
Q ss_pred ceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecc--cccCccccCcccccCCCCCCCCCcceeeee
Q psy12966 123 VDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDK--VVMPYVSMVPKNLLEPCAGCAAPYGYHNVM 200 (741)
Q Consensus 123 vDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk--~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l 200 (741)
+||+||||.|+||...++..|..+..+++.|.......|+|+..|.++ ...+ +
T Consensus 1 ldv~~llD~S~Sm~~~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~-------------------------~ 55 (163)
T cd01476 1 LDLLFVLDSSGSVRGKFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVR-------------------------F 55 (163)
T ss_pred CCEEEEEeCCcchhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEE-------------------------e
Confidence 699999999999999888888888888877765556899999999884 2222 1
Q ss_pred cCC--ccHHHHHHhccceeeccCCCCCcchHHHHHHHHhc-cccccccCCccEEEEEecCCC
Q psy12966 201 SLS--QDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVC-KEEIGWRDRARRLLVFSTDAE 259 (741)
Q Consensus 201 ~lT--~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC-~~~igWR~~a~rliv~~TDa~ 259 (741)
+|+ .+.+.+.+.|+.+...|+.=. ..+||..|.-= ....++|++++|+||++||..
T Consensus 56 ~l~~~~~~~~l~~~i~~l~~~gg~T~---l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~ 114 (163)
T cd01476 56 NLPKHNDGEELLEKVDNLRFIGGTTA---TGAAIEVALQQLDPSEGRREGIPKVVVVLTDGR 114 (163)
T ss_pred cCCCCCCHHHHHHHHHhCccCCCCcc---HHHHHHHHHHHhccccCCCCCCCeEEEEECCCC
Confidence 232 356788888887765444323 34444444410 012367888889999999965
No 24
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=98.69 E-value=2.1e-07 Score=106.81 Aligned_cols=202 Identities=18% Similarity=0.163 Sum_probs=121.9
Q ss_pred eeEEEEEeeCccEEEEEEEecc-CCCcceeEEeecCCCChHHh--HHHHHHHHHHHHHHHHhhcCceeEEeeEeeccccc
Q psy12966 97 QHVSLKLRINEAYRMVVDYAQA-EDYPVDLYYLMDLSNSMRDD--KDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVM 173 (741)
Q Consensus 97 q~v~~~LR~G~~~~~~~~~~~~-~~~pvDly~LmDlS~SM~dd--l~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~ 173 (741)
..+.|.||-++.+-=.++++.. -...+|||||||.|+||+.+ ++.+|.++..|+..+.--...+++|+..|.+++.
T Consensus 16 ~~~~~~~~~~~~~~d~~k~~e~vC~~~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r- 94 (576)
T PTZ00441 16 LYVSIFARGDNKIVDEVKYREEVCNEEVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTT- 94 (576)
T ss_pred HHhHHHhhcccccccccccccccccCCceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCce-
Confidence 4466777776654333444332 24579999999999999855 5788999999998876555678999889998632
Q ss_pred CccccCcccccCCCCCCCCCcceeeeecCCcc----HHHHHHhccce----eeccCCCCCcchHHHHHHHHhcccccccc
Q psy12966 174 PYVSMVPKNLLEPCAGCAAPYGYHNVMSLSQD----TSRFSAQVKGA----NVSGNLDGPEGGFDAIMQAIVCKEEIGWR 245 (741)
Q Consensus 174 P~~~~~p~~l~~Pc~~c~~~f~f~~~l~lT~d----~~~F~~~v~~~----~isgn~D~PE~~ldAl~qa~vC~~~igWR 245 (741)
..++|++. .......|..+ ...|+ -...+||.+|+---..-++|
T Consensus 95 ------------------------~vfpL~s~~s~Dk~~aL~~I~sL~~~~~pgGg----Tnig~AL~~Aae~L~sr~~R 146 (576)
T PTZ00441 95 ------------------------ELIRLGSGASKDKEQALIIVKSLRKTYLPYGK----TNMTDALLEVRKHLNDRVNR 146 (576)
T ss_pred ------------------------EEEecCCCccccHHHHHHHHHHHHhhccCCCC----ccHHHHHHHHHHHHhhcccc
Confidence 12334332 22333333322 23333 22445665555222234678
Q ss_pred CCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEE-EEEecchhhhH
Q psy12966 246 DRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLI-FAVTAEQIGVY 324 (741)
Q Consensus 246 ~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~I-favt~~~~~~Y 324 (741)
.++.|+|||+||...+... .+-+.++.|++.+|.++ |+|-.... .
T Consensus 147 ~nvpKVVILLTDG~sns~~--------------------------------dvleaAq~LR~~GVeI~vIGVG~g~n--~ 192 (576)
T PTZ00441 147 ENAIQLVILMTDGIPNSKY--------------------------------RALEESRKLKDRNVKLAVIGIGQGIN--H 192 (576)
T ss_pred cCCceEEEEEecCCCCCcc--------------------------------cHHHHHHHHHHCCCEEEEEEeCCCcC--H
Confidence 8899999999998743210 13456678899899754 34433222 1
Q ss_pred HHHhhcccC------ceeeeccCCcchHHHHHHHHhhhccceEE
Q psy12966 325 ERLKTHIEG------SSSGTLTNDSSNVVDLVKDQYNKISSSVE 362 (741)
Q Consensus 325 ~~l~~~i~g------s~vg~L~~dSsNiv~lI~~aY~~i~s~v~ 362 (741)
+ +..+|.+ .-.-....++.++..++..-+.+|=..|+
T Consensus 193 e-~LrlIAgC~p~~g~c~~Y~vadf~eL~~ivk~LikkVC~eve 235 (576)
T PTZ00441 193 Q-FNRLLAGCRPREGKCKFYSDADWEEAKNLIKPFIAKVCTEVE 235 (576)
T ss_pred H-HHHHHhccCCCCCCCceEEeCCHHHHHHHHHHHHHHhccccc
Confidence 1 2222321 11123446788888888887777765553
No 25
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=98.63 E-value=1.1e-06 Score=87.41 Aligned_cols=169 Identities=14% Similarity=0.128 Sum_probs=109.1
Q ss_pred eEEeecCCCChHH--hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeecC
Q psy12966 125 LYYLMDLSNSMRD--DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMSL 202 (741)
Q Consensus 125 ly~LmDlS~SM~d--dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~l 202 (741)
++||+|.|+||.. -++.+|..+..|+..+ +..+-++|+..|.++.. +..+++
T Consensus 3 v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~--~~~~d~v~lv~F~~~~~------------------------~~~~~~ 56 (178)
T cd01451 3 VIFVVDASGSMAARHRMAAAKGAVLSLLRDA--YQRRDKVALIAFRGTEA------------------------EVLLPP 56 (178)
T ss_pred EEEEEECCccCCCccHHHHHHHHHHHHHHHh--hcCCCEEEEEEECCCCc------------------------eEEeCC
Confidence 6899999999985 5777887777776433 23577999999986411 123567
Q ss_pred CccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCccccc
Q psy12966 203 SQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMD 282 (741)
Q Consensus 203 T~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~ 282 (741)
|.+...+...++.+...|+ +| ..+||.+|+-=-....|+.+.+++|||+||...+...|
T Consensus 57 t~~~~~~~~~l~~l~~~G~--T~--l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~----------------- 115 (178)
T cd01451 57 TRSVELAKRRLARLPTGGG--TP--LAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPD----------------- 115 (178)
T ss_pred CCCHHHHHHHHHhCCCCCC--Cc--HHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCC-----------------
Confidence 7777888888887765443 22 23444444410012357766789999999986332110
Q ss_pred CCCCccccccCCCC-CHHHHHHHHHhcCccEEEEEecc---hhhhHHHHhhcccCceeeeccCCcchHHHHHH
Q psy12966 283 RNGMYTHSTVQDYP-SISQINMKVKQNSINLIFAVTAE---QIGVYERLKTHIEGSSSGTLTNDSSNVVDLVK 351 (741)
Q Consensus 283 ~~~~Y~~s~~~DYP-Sv~ql~~~l~e~~I~~Ifavt~~---~~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI~ 351 (741)
..+ ...++.+.+++.+|.++..-+.. ....-++|++...|.....-..++.+|..+++
T Consensus 116 -----------~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~~~~~~~~~ 177 (178)
T cd01451 116 -----------PTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSADAIASAVR 177 (178)
T ss_pred -----------chhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCHHHHHHHhh
Confidence 001 12677888999998876544432 23456778877777776666677888887764
No 26
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=98.54 E-value=6.4e-07 Score=90.90 Aligned_cols=141 Identities=18% Similarity=0.270 Sum_probs=90.6
Q ss_pred CCCcceeEEeecCCCChH-HhHHHHHHHHHHHHHHHHhh------cCceeEEeeEeecccccCccccCcccccCCCCCCC
Q psy12966 119 EDYPVDLYYLMDLSNSMR-DDKDRLSALGDQLSASMQEV------TSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCA 191 (741)
Q Consensus 119 ~~~pvDly~LmDlS~SM~-ddl~~lk~l~~~l~~~l~~~------t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~ 191 (741)
.+.++||+||+|.|+||. ++++.+|....+++..+.-+ ....|+|+..|.+.+..
T Consensus 16 ~~~~~DivfvlD~S~Sm~~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~------------------ 77 (193)
T cd01477 16 KNLWLDIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATV------------------ 77 (193)
T ss_pred ccceeeEEEEEeCCCCcchhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEE------------------
Confidence 567899999999999997 55899999999988877543 34689999999996432
Q ss_pred CCcceeeeecCCc--cHHHHHHhccce--ee-ccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCC
Q psy12966 192 APYGYHNVMSLSQ--DTSRFSAQVKGA--NV-SGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDG 266 (741)
Q Consensus 192 ~~f~f~~~l~lT~--d~~~F~~~v~~~--~i-sgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg 266 (741)
.++|++ +...+.++|+.. .+ +++.-.=-.+|.+.++...- ..=+=|+++.|+|||+||......
T Consensus 78 -------~~~L~d~~~~~~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~-~~~~~R~~v~kvvIllTDg~~~~~--- 146 (193)
T cd01477 78 -------VADLNDLQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAA-GKRTSRENYKKVVIVFASDYNDEG--- 146 (193)
T ss_pred -------EEecccccCHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHh-hhccccCCCCeEEEEEecCccCCC---
Confidence 245554 556777777741 22 22211112233333333311 001337788999999998742110
Q ss_pred CccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEe
Q psy12966 267 KLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVT 317 (741)
Q Consensus 267 ~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt 317 (741)
+ .++.++++.|++.+|.+ |+|.
T Consensus 147 -----------------------~-----~~~~~~a~~l~~~GI~i-~tVG 168 (193)
T cd01477 147 -----------------------S-----NDPRPIAARLKSTGIAI-ITVA 168 (193)
T ss_pred -----------------------C-----CCHHHHHHHHHHCCCEE-EEEE
Confidence 0 12567888999999885 5553
No 27
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.49 E-value=1.1e-06 Score=86.75 Aligned_cols=145 Identities=14% Similarity=0.211 Sum_probs=95.2
Q ss_pred eeEEeecCCCChH-HhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeecC
Q psy12966 124 DLYYLMDLSNSMR-DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMSL 202 (741)
Q Consensus 124 Dly~LmDlS~SM~-ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~l 202 (741)
||+||+|.|+||+ ++++.+|+.+.+|++.+.--....|+|+..|.+.+..- |.|. -
T Consensus 2 DivfllD~S~Si~~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~-------------------~~l~----~ 58 (165)
T cd01481 2 DIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPE-------------------FYLN----T 58 (165)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEE-------------------Eecc----c
Confidence 9999999999999 89999999999999998544567999999999864321 2221 1
Q ss_pred CccHHHHHHhccceeeccCCCCCcchHHHHHHHHh--cccccc--ccCCccEEEEEecCCCCCcCCCCCccceecCCCCc
Q psy12966 203 SQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIV--CKEEIG--WRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGL 278 (741)
Q Consensus 203 T~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~v--C~~~ig--WR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~ 278 (741)
-.+...+.+.|+++.-.|+.- -..-.||.-|.. =...-| +|+++.|++|++||...+.
T Consensus 59 ~~~~~~l~~~i~~i~~~~g~~--t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d---------------- 120 (165)
T cd01481 59 HSTKADVLGAVRRLRLRGGSQ--LNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQD---------------- 120 (165)
T ss_pred cCCHHHHHHHHHhcccCCCCc--ccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcc----------------
Confidence 225677888888876544310 012234433320 001123 3467789999999986331
Q ss_pred ccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecchhhhHHHHhh
Q psy12966 279 CHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKT 329 (741)
Q Consensus 279 Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~~~~~Y~~l~~ 329 (741)
.+.+.++.|++.+|. ||+|.-... ..++|..
T Consensus 121 ------------------~~~~~a~~lr~~gv~-i~~vG~~~~-~~~eL~~ 151 (165)
T cd01481 121 ------------------DVERPAVALKRAGIV-PFAIGARNA-DLAELQQ 151 (165)
T ss_pred ------------------hHHHHHHHHHHCCcE-EEEEeCCcC-CHHHHHH
Confidence 145678889999987 577765422 2344544
No 28
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=98.46 E-value=4.1e-06 Score=84.80 Aligned_cols=172 Identities=15% Similarity=0.203 Sum_probs=103.2
Q ss_pred ceeEEeecCCCChHHh-HH-HHHHHHHHHHHHHHhhcCceeEEeeEeecccc--cCccccCcccccCCCCCCCCCcceee
Q psy12966 123 VDLYYLMDLSNSMRDD-KD-RLSALGDQLSASMQEVTSNFRLGFGSFVDKVV--MPYVSMVPKNLLEPCAGCAAPYGYHN 198 (741)
Q Consensus 123 vDly~LmDlS~SM~dd-l~-~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~--~P~~~~~p~~l~~Pc~~c~~~f~f~~ 198 (741)
.||+||+|.|+||+.+ .. .+|..+..|++.|.--..+.|+|+..|.+.+. .||.+
T Consensus 1 ~Di~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~--------------------- 59 (192)
T cd01473 1 YDLTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSD--------------------- 59 (192)
T ss_pred CcEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEecCc---------------------
Confidence 5999999999999854 77 48999999998886656789999999999752 22211
Q ss_pred eecCCccHHHHHHhcccee---eccCCCCCcchHHHHHHHHhc-cccccccCCccEEEEEecCCCCCcCCCCCccceecC
Q psy12966 199 VMSLSQDTSRFSAQVKGAN---VSGNLDGPEGGFDAIMQAIVC-KEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKP 274 (741)
Q Consensus 199 ~l~lT~d~~~F~~~v~~~~---isgn~D~PE~~ldAl~qa~vC-~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~p 274 (741)
....+.+...+.|+.+. .+|+.- ..-+||..|.-= ...-|=|+++.|++||+||...|...+
T Consensus 60 --~~~~~~~~l~~~i~~l~~~~~~~g~T---~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~--------- 125 (192)
T cd01473 60 --EERYDKNELLKKINDLKNSYRSGGET---YIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASK--------- 125 (192)
T ss_pred --ccccCHHHHHHHHHHHHhccCCCCcC---cHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcch---------
Confidence 11123455555555542 323311 134555554310 011233566799999999998765310
Q ss_pred CCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecchhhhHHHHhhcccCc-----eeeeccCCcchHHHH
Q psy12966 275 NDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGS-----SSGTLTNDSSNVVDL 349 (741)
Q Consensus 275 nDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~~~~~Y~~l~~~i~gs-----~vg~L~~dSsNiv~l 349 (741)
+.+.+.++.|+++||.++ +|-=.... ..+|..+-+.. -.-.+..++.++..+
T Consensus 126 ---------------------~~~~~~a~~lk~~gV~i~-~vGiG~~~-~~el~~ia~~~~~~~~~~~~~~~~f~~l~~~ 182 (192)
T cd01473 126 ---------------------KELQDISLLYKEENVKLL-VVGVGAAS-ENKLKLLAGCDINNDNCPNVIKTEWNNLNGI 182 (192)
T ss_pred ---------------------hhHHHHHHHHHHCCCEEE-EEEecccc-HHHHHHhcCCCCCCCCCCeEEecchhhHHHH
Confidence 126678889999999874 44322222 23344333210 011234458887776
Q ss_pred HHH
Q psy12966 350 VKD 352 (741)
Q Consensus 350 I~~ 352 (741)
+..
T Consensus 183 ~~~ 185 (192)
T cd01473 183 SKF 185 (192)
T ss_pred HHH
Confidence 543
No 29
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.45 E-value=4e-06 Score=82.57 Aligned_cols=107 Identities=20% Similarity=0.218 Sum_probs=66.6
Q ss_pred cceeEEeecCCCChHHh-------HHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCc
Q psy12966 122 PVDLYYLMDLSNSMRDD-------KDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPY 194 (741)
Q Consensus 122 pvDly~LmDlS~SM~dd-------l~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f 194 (741)
.+|++||+|.|+||... ++.+|.++..++ ....+.|+|+..|.+...
T Consensus 2 ~~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~----~~~~~~~v~lv~f~~~~~---------------------- 55 (180)
T cd01467 2 GRDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFI----DRRENDRIGLVVFAGAAF---------------------- 55 (180)
T ss_pred CceEEEEEECCcccccccCCCCCHHHHHHHHHHHHH----HhCCCCeEEEEEEcCCee----------------------
Confidence 58999999999999753 344455444433 334678999999987532
Q ss_pred ceeeeecCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCC
Q psy12966 195 GYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFH 261 (741)
Q Consensus 195 ~f~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H 261 (741)
..++++.+...+.+.++.+... ..+.+-...+||..|+ +.+.++...+++|||+||...+
T Consensus 56 ---~~~~~~~~~~~~~~~l~~l~~~-~~~g~T~l~~al~~a~---~~l~~~~~~~~~iiliTDG~~~ 115 (180)
T cd01467 56 ---TQAPLTLDRESLKELLEDIKIG-LAGQGTAIGDAIGLAI---KRLKNSEAKERVIVLLTDGENN 115 (180)
T ss_pred ---eccCCCccHHHHHHHHHHhhhc-ccCCCCcHHHHHHHHH---HHHHhcCCCCCEEEEEeCCCCC
Confidence 1245666666666666654411 0111223445555555 4555555567999999998643
No 30
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.20 E-value=2e-05 Score=76.49 Aligned_cols=108 Identities=16% Similarity=0.204 Sum_probs=67.3
Q ss_pred ceeEEeecCCCChHH-hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeec
Q psy12966 123 VDLYYLMDLSNSMRD-DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMS 201 (741)
Q Consensus 123 vDly~LmDlS~SM~d-dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~ 201 (741)
|+|+||+|.|+||.. +++.+|..+..++. .+..+-++|+..|.+++...+ . +.
T Consensus 1 ~~~~~vlD~S~SM~~~~~~~~k~a~~~~~~---~l~~~~~v~li~f~~~~~~~~-------------------~----~~ 54 (170)
T cd01465 1 LNLVFVIDRSGSMDGPKLPLVKSALKLLVD---QLRPDDRLAIVTYDGAAETVL-------------------P----AT 54 (170)
T ss_pred CcEEEEEECCCCCCChhHHHHHHHHHHHHH---hCCCCCEEEEEEecCCccEEe-------------------c----Cc
Confidence 689999999999965 47777776665554 445567999999988633211 0 01
Q ss_pred CCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCC
Q psy12966 202 LSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFH 261 (741)
Q Consensus 202 lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H 261 (741)
...+...+.+.|+.+...|+-+..++...| ++.+. . .|+++..+.|||+||...+
T Consensus 55 ~~~~~~~l~~~l~~~~~~g~T~~~~al~~a-~~~~~--~--~~~~~~~~~ivl~TDG~~~ 109 (170)
T cd01465 55 PVRDKAAILAAIDRLTAGGSTAGGAGIQLG-YQEAQ--K--HFVPGGVNRILLATDGDFN 109 (170)
T ss_pred ccchHHHHHHHHHcCCCCCCCCHHHHHHHH-HHHHH--h--hcCCCCeeEEEEEeCCCCC
Confidence 123567777888877765554443333333 33331 1 3343444778899999743
No 31
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=98.17 E-value=9.9e-06 Score=81.68 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=73.4
Q ss_pred ceeEEeecCCCChH-HhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccc--cCccccCcccccCCCCCCCCCcceeee
Q psy12966 123 VDLYYLMDLSNSMR-DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVV--MPYVSMVPKNLLEPCAGCAAPYGYHNV 199 (741)
Q Consensus 123 vDly~LmDlS~SM~-ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~--~P~~~~~p~~l~~Pc~~c~~~f~f~~~ 199 (741)
+|++||+|.|+||. +.++.+|..+..|++.|.....+.|+|+..|.+.+. .|+.
T Consensus 1 ~di~~vlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~~----------------------- 57 (198)
T cd01470 1 LNIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIR----------------------- 57 (198)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEecc-----------------------
Confidence 69999999999996 788999999999999887666688999999887521 1111
Q ss_pred ecCCccHHHHHHhccceeeccCCC-CCcchHHHHHHHH--hcccccc---ccCCccEEEEEecCCCCC
Q psy12966 200 MSLSQDTSRFSAQVKGANVSGNLD-GPEGGFDAIMQAI--VCKEEIG---WRDRARRLLVFSTDAEFH 261 (741)
Q Consensus 200 l~lT~d~~~F~~~v~~~~isgn~D-~PE~~ldAl~qa~--vC~~~ig---WR~~a~rliv~~TDa~~H 261 (741)
...+.+...+.+.|+.+...+... .--...+||-.|. +-..... .+.+.+++|||+||...+
T Consensus 58 ~~~~~~~~~~~~~l~~~~~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~ 125 (198)
T cd01470 58 DFNSNDADDVIKRLEDFNYDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSN 125 (198)
T ss_pred cCCCCCHHHHHHHHHhCCcccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcC
Confidence 123456777888887764321100 0012344443322 0000111 123568999999998744
No 32
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.15 E-value=9.3e-06 Score=81.45 Aligned_cols=121 Identities=15% Similarity=0.213 Sum_probs=74.3
Q ss_pred CCCcceeEEeecCCCChH-HhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCccee
Q psy12966 119 EDYPVDLYYLMDLSNSMR-DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYH 197 (741)
Q Consensus 119 ~~~pvDly~LmDlS~SM~-ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~ 197 (741)
...|.|++||||.|+||. ..++.+|..+..|++. +..+-++|+-.|.+.+...+ || +..+
T Consensus 10 ~~~p~~vv~llD~SgSM~~~~l~~ak~~~~~ll~~---l~~~d~v~lv~F~~~~~~~~----------~~------~~~~ 70 (190)
T cd01463 10 ATSPKDIVILLDVSGSMTGQRLHLAKQTVSSILDT---LSDNDFFNIITFSNEVNPVV----------PC------FNDT 70 (190)
T ss_pred ccCCceEEEEEECCCCCCcHHHHHHHHHHHHHHHh---CCCCCEEEEEEeCCCeeEEe----------ee------cccc
Confidence 356999999999999997 5577777777777654 45566999999999754321 11 1111
Q ss_pred eeecCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccc---cccccCCccEEEEEecCCC
Q psy12966 198 NVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKE---EIGWRDRARRLLVFSTDAE 259 (741)
Q Consensus 198 ~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~---~igWR~~a~rliv~~TDa~ 259 (741)
-....+.+...+.+.|..+...|+-+.- .+|.+.++.+.-.. .-+=|++.++.|||+||..
T Consensus 71 ~~~~~~~~~~~~~~~l~~l~~~G~T~~~-~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~ 134 (190)
T cd01463 71 LVQATTSNKKVLKEALDMLEAKGIANYT-KALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGV 134 (190)
T ss_pred eEecCHHHHHHHHHHHhhCCCCCcchHH-HHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCC
Confidence 1222345778888888887776643222 22222222221100 0111345678999999986
No 33
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.08 E-value=5e-05 Score=73.68 Aligned_cols=107 Identities=17% Similarity=0.158 Sum_probs=68.2
Q ss_pred cceeEEeecCCCChHHh-HHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeee
Q psy12966 122 PVDLYYLMDLSNSMRDD-KDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVM 200 (741)
Q Consensus 122 pvDly~LmDlS~SM~dd-l~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l 200 (741)
|.|++||+|.|+||... ++.+|..+..++. .+...-++++-.|.+.....+ +.+ .
T Consensus 2 ~~~v~~vlD~S~SM~~~~~~~~~~al~~~l~---~l~~~~~~~l~~Fs~~~~~~~----------------~~~-----~ 57 (171)
T cd01461 2 PKEVVFVIDTSGSMSGTKIEQTKEALLTALK---DLPPGDYFNIIGFSDTVEEFS----------------PSS-----V 57 (171)
T ss_pred CceEEEEEECCCCCCChhHHHHHHHHHHHHH---hCCCCCEEEEEEeCCCceeec----------------Ccc-----e
Confidence 78999999999999754 6666666655544 455566899999988633211 000 0
Q ss_pred cC-CccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCC
Q psy12966 201 SL-SQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAE 259 (741)
Q Consensus 201 ~l-T~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~ 259 (741)
+. .++.....+.++.+...|+-+ ...||..|. +.+.++++..+.|||+||..
T Consensus 58 ~~~~~~~~~~~~~l~~~~~~g~T~----l~~al~~a~---~~l~~~~~~~~~iillTDG~ 110 (171)
T cd01461 58 SATAENVAAAIEYVNRLQALGGTN----MNDALEAAL---ELLNSSPGSVPQIILLTDGE 110 (171)
T ss_pred eCCHHHHHHHHHHHHhcCCCCCcC----HHHHHHHHH---HhhccCCCCccEEEEEeCCC
Confidence 11 234455666666665544422 444555554 45666667789999999987
No 34
>PRK13685 hypothetical protein; Provisional
Probab=97.99 E-value=0.00013 Score=79.90 Aligned_cols=111 Identities=15% Similarity=0.208 Sum_probs=76.5
Q ss_pred CCCcceeEEeecCCCChHH------hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCC
Q psy12966 119 EDYPVDLYYLMDLSNSMRD------DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAA 192 (741)
Q Consensus 119 ~~~pvDly~LmDlS~SM~d------dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~ 192 (741)
...+.|+++++|+|+||.. -++..|+.+.++++.+ ..+-|+|+..|.+...
T Consensus 85 ~~~~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l---~~~d~vglv~Fa~~a~-------------------- 141 (326)
T PRK13685 85 PRNRAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADEL---TPGINLGLIAFAGTAT-------------------- 141 (326)
T ss_pred CCCCceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhC---CCCCeEEEEEEcCcee--------------------
Confidence 3457899999999999983 5888888888887654 4678999999998521
Q ss_pred CcceeeeecCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhcccccc-----ccCCccEEEEEecCCCCC
Q psy12966 193 PYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIG-----WRDRARRLLVFSTDAEFH 261 (741)
Q Consensus 193 ~f~f~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~ig-----WR~~a~rliv~~TDa~~H 261 (741)
-.+++|.|.+.....++.+...++-+. -+||..|+-=-.... .+....+.||++||..-+
T Consensus 142 -----~~~p~t~d~~~l~~~l~~l~~~~~T~~----g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~ 206 (326)
T PRK13685 142 -----VLVSPTTNREATKNAIDKLQLADRTAT----GEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKET 206 (326)
T ss_pred -----ecCCCCCCHHHHHHHHHhCCCCCCcch----HHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCC
Confidence 235789999999999999887655332 244444431001111 122335678999998644
No 35
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.89 E-value=4.3e-05 Score=75.63 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=40.3
Q ss_pred cceeEEeecCCCChH-HhHHHHHHHHHHHHHHHHhhc---CceeEEeeEeecc
Q psy12966 122 PVDLYYLMDLSNSMR-DDKDRLSALGDQLSASMQEVT---SNFRLGFGSFVDK 170 (741)
Q Consensus 122 pvDly~LmDlS~SM~-ddl~~lk~l~~~l~~~l~~~t---~~~r~GfgsFvDk 170 (741)
+++++||+|.|+||. ++++.+|+.+..|++.|..-. .+.|+|+..|.+.
T Consensus 3 ~~~v~~llD~SgSM~~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~ 55 (176)
T cd01464 3 RLPIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSA 55 (176)
T ss_pred CCCEEEEEECCCCCCChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCC
Confidence 589999999999996 467889988888888887522 4679999998874
No 36
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=97.89 E-value=0.00018 Score=70.99 Aligned_cols=112 Identities=20% Similarity=0.228 Sum_probs=69.7
Q ss_pred eEEeecCCCChHH--hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeecC
Q psy12966 125 LYYLMDLSNSMRD--DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMSL 202 (741)
Q Consensus 125 ly~LmDlS~SM~d--dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~l 202 (741)
+.||+|.|+||.. -++.+|..+..|++.|.. .+.++|+-.|.+.. |-.. ... +....++
T Consensus 3 v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~--~~d~~~l~~F~~~~--~~~~-~~~--------------~~~~~~~ 63 (174)
T cd01454 3 VTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEA--CGVPHAILGFTTDA--GGRE-RVR--------------WIKIKDF 63 (174)
T ss_pred EEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHH--cCCcEEEEEecCCC--CCcc-ceE--------------EEEecCc
Confidence 6899999999998 788899999999888876 57789998898763 1000 000 0000122
Q ss_pred CccH-HHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCc
Q psy12966 203 SQDT-SRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHH 262 (741)
Q Consensus 203 T~d~-~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~ 262 (741)
+... ......+..+...|+ +| ..+||..|+ +.+.=++..+|+||++||..++.
T Consensus 64 ~~~~~~~~~~~l~~~~~~g~--T~--~~~al~~a~---~~l~~~~~~~~~iiliTDG~~~~ 117 (174)
T cd01454 64 DESLHERARKRLAALSPGGN--TR--DGAAIRHAA---ERLLARPEKRKILLVISDGEPND 117 (174)
T ss_pred ccccchhHHHHHHccCCCCC--Cc--HHHHHHHHH---HHHhcCCCcCcEEEEEeCCCcCc
Confidence 2221 234455555554442 22 345555555 33433456789999999998664
No 37
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.86 E-value=0.00036 Score=81.95 Aligned_cols=180 Identities=13% Similarity=0.084 Sum_probs=114.5
Q ss_pred cceeEEeecCCCChH-HhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeee
Q psy12966 122 PVDLYYLMDLSNSMR-DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVM 200 (741)
Q Consensus 122 pvDly~LmDlS~SM~-ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l 200 (741)
+.+++||+|.|+||. +-|..+|..+..|+.. .....=++|+..|..... ...+
T Consensus 401 ~~~vvfvvD~SGSM~~~rl~~aK~a~~~ll~~--ay~~rD~v~lI~F~g~~a------------------------~~~l 454 (584)
T PRK13406 401 ETTTIFVVDASGSAALHRLAEAKGAVELLLAE--AYVRRDQVALVAFRGRGA------------------------ELLL 454 (584)
T ss_pred CccEEEEEECCCCCcHhHHHHHHHHHHHHHHh--hcCCCCEEEEEEECCCce------------------------eEEc
Confidence 599999999999995 4566666666665533 234566899998865311 1357
Q ss_pred cCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCccc
Q psy12966 201 SLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCH 280 (741)
Q Consensus 201 ~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Ch 280 (741)
+.|.+.......|..+...|+ +| ..+||..|.-=- ..-.+.+.++.|||+||...+...++.. |-
T Consensus 455 ppT~~~~~~~~~L~~l~~gGg--Tp--L~~gL~~A~~~l-~~~~~~~~~~~iVLlTDG~~n~~~~~~~-~~--------- 519 (584)
T PRK13406 455 PPTRSLVRAKRSLAGLPGGGG--TP--LAAGLDAAAALA-LQVRRKGMTPTVVLLTDGRANIARDGTA-GR--------- 519 (584)
T ss_pred CCCcCHHHHHHHHhcCCCCCC--Ch--HHHHHHHHHHHH-HHhccCCCceEEEEEeCCCCCCCccccc-cc---------
Confidence 788899999999987765554 22 445554444100 1124456789999999999775433221 10
Q ss_pred ccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecch-hhhHHHHhhcccCceeeeccCCcchHHHHHHHH
Q psy12966 281 MDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQ-IGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQ 353 (741)
Q Consensus 281 l~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~~-~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI~~a 353 (741)
.+ ..-..-++.+.+.+.+|..++.-+... ...-++|++...+-.+-.=..++..|.++++.+
T Consensus 520 --~~---------~~~~~~~~a~~~~~~gi~~~vId~g~~~~~~~~~LA~~~gg~y~~l~~~~a~~~~~~v~~~ 582 (584)
T PRK13406 520 --AQ---------AEEDALAAARALRAAGLPALVIDTSPRPQPQARALAEAMGARYLPLPRADAGRLSQAVRAA 582 (584)
T ss_pred --cc---------hhhHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHhcCCeEEECCCCCHHHHHHHHHhh
Confidence 00 001245678889999988776666532 234467777777665543356777888877654
No 38
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=97.86 E-value=0.00023 Score=72.21 Aligned_cols=131 Identities=14% Similarity=0.235 Sum_probs=89.4
Q ss_pred eEEeecCCCChHH------hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceee
Q psy12966 125 LYYLMDLSNSMRD------DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHN 198 (741)
Q Consensus 125 ly~LmDlS~SM~d------dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~ 198 (741)
.++++|+|.||.. =|+..|..+..|+.+.-+.-..-|+|+.+|.++. | .-
T Consensus 6 ~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~--a----------------------~v 61 (187)
T cd01452 6 TMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNS--P----------------------EV 61 (187)
T ss_pred EEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCc--e----------------------EE
Confidence 5899999999974 4677777777776544444455699999999952 1 13
Q ss_pred eecCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCC--cc-EEEEEecCC-CCCcCCCCCccceecC
Q psy12966 199 VMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDR--AR-RLLVFSTDA-EFHHAGDGKLGGIVKP 274 (741)
Q Consensus 199 ~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~--a~-rliv~~TDa-~~H~agDg~L~Gi~~p 274 (741)
..+||.|...+...++.+...|+-| --.||.+|. ..+.-|++ .+ |+|||+++. .-|. +
T Consensus 62 ~~plT~D~~~~~~~L~~i~~~g~~~----l~~AL~~A~---~~L~~~~~~~~~~rivi~v~S~~~~d~-~---------- 123 (187)
T cd01452 62 LVTLTNDQGKILSKLHDVQPKGKAN----FITGIQIAQ---LALKHRQNKNQKQRIVAFVGSPIEEDE-K---------- 123 (187)
T ss_pred EECCCCCHHHHHHHHHhCCCCCcch----HHHHHHHHH---HHHhcCCCcCCcceEEEEEecCCcCCH-H----------
Confidence 5789999999999999877655532 334444444 23333444 44 877777665 3221 1
Q ss_pred CCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecc
Q psy12966 275 NDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAE 319 (741)
Q Consensus 275 nDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~ 319 (741)
.+-++.++|+++||.+-+.....
T Consensus 124 ----------------------~i~~~~~~lkk~~I~v~vI~~G~ 146 (187)
T cd01452 124 ----------------------DLVKLAKRLKKNNVSVDIINFGE 146 (187)
T ss_pred ----------------------HHHHHHHHHHHcCCeEEEEEeCC
Confidence 26678999999999987655544
No 39
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=97.82 E-value=8.4e-05 Score=72.28 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=64.8
Q ss_pred ceeEEeecCCCChHHh-HHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeec
Q psy12966 123 VDLYYLMDLSNSMRDD-KDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMS 201 (741)
Q Consensus 123 vDly~LmDlS~SM~dd-l~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~ 201 (741)
+||+||+|.|+||..+ ++.+|.....|++ .+..+-++|+-.|.+.....+ .+ .+
T Consensus 1 ~~v~~vlD~S~SM~~~rl~~ak~a~~~l~~---~l~~~~~~~li~F~~~~~~~~-------------------~~---~~ 55 (155)
T cd01466 1 VDLVAVLDVSGSMAGDKLQLVKHALRFVIS---SLGDADRLSIVTFSTSAKRLS-------------------PL---RR 55 (155)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHHHH---hCCCcceEEEEEecCCccccC-------------------CC---cc
Confidence 6999999999999975 6666665555544 445667899999987532110 00 11
Q ss_pred CCc-cHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCC
Q psy12966 202 LSQ-DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAE 259 (741)
Q Consensus 202 lT~-d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~ 259 (741)
++. +...+.+.++.+...|+- ....+|....+.+ .-.|+.+..+.|||+||..
T Consensus 56 ~~~~~~~~~~~~i~~~~~~g~T-~~~~al~~a~~~~----~~~~~~~~~~~iillTDG~ 109 (155)
T cd01466 56 MTAKGKRSAKRVVDGLQAGGGT-NVVGGLKKALKVL----GDRRQKNPVASIMLLSDGQ 109 (155)
T ss_pred cCHHHHHHHHHHHHhccCCCCc-cHHHHHHHHHHHH----hhcccCCCceEEEEEcCCC
Confidence 222 456778888876554432 2222232223332 1245556678999999986
No 40
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.75 E-value=0.00076 Score=68.52 Aligned_cols=118 Identities=21% Similarity=0.222 Sum_probs=72.4
Q ss_pred CCCcceeEEeecCCCChH-------HhHHHHHHHHHHHHHHHHhhcCceeEEeeEeeccccc--CccccCcccccCCCCC
Q psy12966 119 EDYPVDLYYLMDLSNSMR-------DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVM--PYVSMVPKNLLEPCAG 189 (741)
Q Consensus 119 ~~~pvDly~LmDlS~SM~-------ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~--P~~~~~p~~l~~Pc~~ 189 (741)
...|.+++||+|.|+||. +-|+.+|..+..+++. +..+-|+|+-.|.+..-. +|....| +|
T Consensus 17 ~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~---l~~~~~v~lv~F~~~~~~~~~~~~~~p-----~~-- 86 (206)
T cd01456 17 PQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANA---LPDGTRLGLWTFSGDGDNPLDVRVLVP-----KG-- 86 (206)
T ss_pred cCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHh---CCCCceEEEEEecCCCCCCcccccccc-----cc--
Confidence 345899999999999998 4566777777766544 567889999999985211 1110000 01
Q ss_pred CCCCcceeeeecCC-ccHHHHHHhcccee-eccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCC
Q psy12966 190 CAAPYGYHNVMSLS-QDTSRFSAQVKGAN-VSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAE 259 (741)
Q Consensus 190 c~~~f~f~~~l~lT-~d~~~F~~~v~~~~-isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~ 259 (741)
.... .+..+. .+...+.+.|+.+. ..|+ + ...+||.+|. +.+. ++..+.|||+||..
T Consensus 87 -~~~~---~~~~~~~~~~~~l~~~i~~i~~~~G~--T--~l~~aL~~a~---~~l~--~~~~~~iillTDG~ 145 (206)
T cd01456 87 -CLTA---PVNGFPSAQRSALDAALNSLQTPTGW--T--PLAAALAEAA---AYVD--PGRVNVVVLITDGE 145 (206)
T ss_pred -cccc---ccCCCCcccHHHHHHHHHhhcCCCCc--C--hHHHHHHHHH---HHhC--CCCcceEEEEcCCC
Confidence 0000 001111 47788888888887 4443 2 2455666665 3443 34448999999986
No 41
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=97.74 E-value=0.00064 Score=71.45 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=109.9
Q ss_pred CCcceeEEeecCCCChHHh--HHHHHHHHHHHHHHHHhhcCceeEEeeEeec-ccccCccccCcccccCCCCCCCCCcce
Q psy12966 120 DYPVDLYYLMDLSNSMRDD--KDRLSALGDQLSASMQEVTSNFRLGFGSFVD-KVVMPYVSMVPKNLLEPCAGCAAPYGY 196 (741)
Q Consensus 120 ~~pvDly~LmDlS~SM~dd--l~~lk~l~~~l~~~l~~~t~~~r~GfgsFvD-k~~~P~~~~~p~~l~~Pc~~c~~~f~f 196 (741)
.-...++|++|.|+||.-+ ++..|..+-.|+.. .....-++++..|.- + .
T Consensus 76 r~g~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~d--AYq~RdkvavI~F~G~~---------A---------------- 128 (261)
T COG1240 76 RAGNLIVFVVDASGSMAARRRMAAAKGAALSLLRD--AYQRRDKVAVIAFRGEK---------A---------------- 128 (261)
T ss_pred CcCCcEEEEEeCcccchhHHHHHHHHHHHHHHHHH--HHHccceEEEEEecCCc---------c----------------
Confidence 3358999999999999999 99999988888744 445688999988873 2 1
Q ss_pred eeeecCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccC-----CccEEEEEecCCCCCcCCCCCccce
Q psy12966 197 HNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRD-----RARRLLVFSTDAEFHHAGDGKLGGI 271 (741)
Q Consensus 197 ~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~-----~a~rliv~~TDa~~H~agDg~L~Gi 271 (741)
.-+++.|+++..++++|..+...|.=.-| +||.||. ++.=|. +-+-++|++||.-+-.+.
T Consensus 129 ~lll~pT~sv~~~~~~L~~l~~GG~TPL~----~aL~~a~----ev~~r~~r~~p~~~~~~vviTDGr~n~~~------- 193 (261)
T COG1240 129 ELLLPPTSSVELAERALERLPTGGKTPLA----DALRQAY----EVLAREKRRGPDRRPVMVVITDGRANVPI------- 193 (261)
T ss_pred eEEeCCcccHHHHHHHHHhCCCCCCCchH----HHHHHHH----HHHHHhhccCCCcceEEEEEeCCccCCCC-------
Confidence 24688999999999999999998885444 5566665 333232 356789999998722211
Q ss_pred ecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecch---hhhHHHHhhcccCcee
Q psy12966 272 VKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQ---IGVYERLKTHIEGSSS 336 (741)
Q Consensus 272 ~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~~---~~~Y~~l~~~i~gs~v 336 (741)
+.+ +.. -.-....++.+.+++.++.=+... ..+-++|+..+++-.+
T Consensus 194 -----------~~~-~~~-------e~~~~a~~~~~~g~~~lvid~e~~~~~~g~~~~iA~~~Gg~~~ 242 (261)
T COG1240 194 -----------PLG-PKA-------ETLEAASKLRLRGIQLLVIDTEGSEVRLGLAEEIARASGGEYY 242 (261)
T ss_pred -----------CCc-hHH-------HHHHHHHHHhhcCCcEEEEecCCccccccHHHHHHHHhCCeEE
Confidence 111 111 145688899999998887777643 3455677777766544
No 42
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=97.71 E-value=0.0012 Score=68.66 Aligned_cols=157 Identities=11% Similarity=0.135 Sum_probs=110.7
Q ss_pred cceeEEeecCCCChHHhHHHHHH-HHHHHHHHHHhh----------cCceeEEeeEeecccccCccccCcccccCCCCCC
Q psy12966 122 PVDLYYLMDLSNSMRDDKDRLSA-LGDQLSASMQEV----------TSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGC 190 (741)
Q Consensus 122 pvDly~LmDlS~SM~ddl~~lk~-l~~~l~~~l~~~----------t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c 190 (741)
--||+|+||-|..|+..++.||+ ....+++.+..- +....+|+..|.+.+..|- .+
T Consensus 13 ~~~vVfvvEgTAalgpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~------~~------- 79 (226)
T PF11265_consen 13 QAQVVFVVEGTAALGPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPE------PI------- 79 (226)
T ss_pred cceEEEEEecchhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcc------cc-------
Confidence 47999999999999999999998 556777777642 2457899999998754431 11
Q ss_pred CCCcceeeeecCCccHHHHHHhccceeeccCCCCCcc-hHHHHHHHHhccccccc-c-----CCccEEEEEecCCCCCcC
Q psy12966 191 AAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEG-GFDAIMQAIVCKEEIGW-R-----DRARRLLVFSTDAEFHHA 263 (741)
Q Consensus 191 ~~~f~f~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~-~ldAl~qa~vC~~~igW-R-----~~a~rliv~~TDa~~H~a 263 (741)
-....+|.|...|.+++.++...||+=.+=+ ..+||..|+.|=+.+.= | ....|-.||++-.++|..
T Consensus 80 ------v~~~g~T~~~~~fl~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP~~~ 153 (226)
T PF11265_consen 80 ------VQRSGPTSSPQKFLQWLDAIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPPYRL 153 (226)
T ss_pred ------eeccCCcCCHHHHHHHHHccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCCccc
Confidence 1234689999999999999998887655555 66777777665442220 1 124577788999988875
Q ss_pred CCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecc
Q psy12966 264 GDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAE 319 (741)
Q Consensus 264 gDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~ 319 (741)
.= + +...|.. -+..|++.++.|++|..-+.-...
T Consensus 154 p~--------------~--~~~~~~~------~~~d~la~~~~~~~I~LSiisPrk 187 (226)
T PF11265_consen 154 PV--------------N--ECPQYSG------KTCDQLAVLISERNISLSIISPRK 187 (226)
T ss_pred cc--------------c--CCCcccC------CCHHHHHHHHHhcCceEEEEcCcc
Confidence 41 1 1122321 158999999999999987666544
No 43
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=97.70 E-value=0.00099 Score=67.70 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=64.8
Q ss_pred eEEeecCCCChHH----------hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCc
Q psy12966 125 LYYLMDLSNSMRD----------DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPY 194 (741)
Q Consensus 125 ly~LmDlS~SM~d----------dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f 194 (741)
|.+.+|+|+||.+ -|+.+|..+..+.+-.++ -..=|+|| +.|.++.|+..
T Consensus 3 l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~f~~~-r~~DriG~--~g~~~~~~~lt----------------- 62 (191)
T cd01455 3 LKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDGFEDK-IQYDIIGH--SGDGPCVPFVK----------------- 62 (191)
T ss_pred eEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHHHHHh-Cccceeee--cCcccccCccc-----------------
Confidence 7899999999963 223344444444433222 35668887 55554455432
Q ss_pred ceeeeecCCccHH---HHHHhccceeeccCCCCCcchHHHHHHHHhcccccc-ccCCccEEEEEecCCCC
Q psy12966 195 GYHNVMSLSQDTS---RFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIG-WRDRARRLLVFSTDAEF 260 (741)
Q Consensus 195 ~f~~~l~lT~d~~---~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~ig-WR~~a~rliv~~TDa~~ 260 (741)
| -.|+|.|.+ ...+.+....+.--+ ++..|||..|+ +.+- =.+...|+|||.||+.-
T Consensus 63 -~--d~p~t~d~~~~~~l~~~l~~~q~g~ag---~~TadAi~~av---~rl~~~~~a~~kvvILLTDG~n 123 (191)
T cd01455 63 -T--NHPPKNNKERLETLKMMHAHSQFCWSG---DHTVEATEFAI---KELAAKEDFDEAIVIVLSDANL 123 (191)
T ss_pred -c--ccCcccchhHHHHHHHHHHhcccCccC---ccHHHHHHHHH---HHHHhcCcCCCcEEEEEeCCCc
Confidence 1 236677764 556666665543212 24459999998 4543 23445889999999983
No 44
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=97.68 E-value=0.00087 Score=81.40 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=39.5
Q ss_pred eccCCCcceeEEeecCCCChHH--hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecc
Q psy12966 116 AQAEDYPVDLYYLMDLSNSMRD--DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDK 170 (741)
Q Consensus 116 ~~~~~~pvDly~LmDlS~SM~d--dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk 170 (741)
+..+..+.++++|+|.|+||.. -|+.+|+.+..++..+ +..+-|+|+..|.+.
T Consensus 298 s~lq~~~r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~--l~~~DrVGLVtFsss 352 (863)
T TIGR00868 298 SLLKIRQRIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQT--VEKGSWVGMVTFDSA 352 (863)
T ss_pred eecccCCceEEEEEECCccccccCHHHHHHHHHHHHHHHh--CCCCCEEEEEEECCc
Confidence 3334445789999999999974 4777777777665443 456789999999996
No 45
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.59 E-value=0.0007 Score=80.54 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=98.4
Q ss_pred CCcceeEEeecCCCChHH--hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCccee
Q psy12966 120 DYPVDLYYLMDLSNSMRD--DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYH 197 (741)
Q Consensus 120 ~~pvDly~LmDlS~SM~d--dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~ 197 (741)
.....++||+|+|+||.. -++.+|..+..|+.. .....-++|+..|.+... .
T Consensus 463 r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~--a~~~~D~v~lI~F~g~~a------------------------~ 516 (633)
T TIGR02442 463 RAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRD--AYQKRDKVALITFRGEEA------------------------E 516 (633)
T ss_pred CCCceEEEEEECCccCCCccHHHHHHHHHHHHHHH--hhcCCCEEEEEEECCCCc------------------------e
Confidence 335899999999999974 466677776666543 234578999999976311 1
Q ss_pred eeecCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhcccccc----ccCCccEEEEEecCCCCCcCCCCCccceec
Q psy12966 198 NVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIG----WRDRARRLLVFSTDAEFHHAGDGKLGGIVK 273 (741)
Q Consensus 198 ~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~ig----WR~~a~rliv~~TDa~~H~agDg~L~Gi~~ 273 (741)
..+++|.+...+...|..+...|+ +| ..+||.+|+ ..+. +.+..+++|||+||...... |+.
T Consensus 517 ~~~p~t~~~~~~~~~L~~l~~gG~--Tp--l~~aL~~A~---~~l~~~~~~~~~~~~~vvliTDG~~n~~-~~~------ 582 (633)
T TIGR02442 517 VLLPPTSSVELAARRLEELPTGGR--TP--LAAGLLKAA---EVLSNELLRDDDGRPLLVVITDGRANVA-DGG------ 582 (633)
T ss_pred EEcCCCCCHHHHHHHHHhCCCCCC--CC--HHHHHHHHH---HHHHHhhccCCCCceEEEEECCCCCCCC-CCC------
Confidence 346788888888888887766544 22 234444444 2222 55578899999999875543 110
Q ss_pred CCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecch---hhhHHHHhhcccCc
Q psy12966 274 PNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQ---IGVYERLKTHIEGS 334 (741)
Q Consensus 274 pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~~---~~~Y~~l~~~i~gs 334 (741)
+ + ..+ -+-++++.|.+.+|..++.-|... ...-++|++.++|-
T Consensus 583 ~---------~-------~~~--~~~~~a~~l~~~~i~~~vIdt~~~~~~~~~~~~lA~~~gg~ 628 (633)
T TIGR02442 583 E---------P-------PTD--DARTIAAKLAARGILFVVIDTESGFVRLGLAEDLARALGGE 628 (633)
T ss_pred C---------C-------hHH--HHHHHHHHHHhcCCeEEEEeCCCCCcchhHHHHHHHhhCCe
Confidence 0 0 000 145678888888988776555431 23345566655543
No 46
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.53 E-value=0.00038 Score=66.86 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=64.5
Q ss_pred eeEEeecCCCChHHh-HHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeecC
Q psy12966 124 DLYYLMDLSNSMRDD-KDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMSL 202 (741)
Q Consensus 124 Dly~LmDlS~SM~dd-l~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~l 202 (741)
|+++|+|.|+||... +...|.++..|+..+.. .+-++++..|.++... ..++.
T Consensus 2 ~v~illD~SgSM~~~k~~~a~~~~~~l~~~~~~--~~~~v~li~F~~~~~~------------------------~~~~~ 55 (152)
T cd01462 2 PVILLVDQSGSMYGAPEEVAKAVALALLRIALA--ENRDTYLILFDSEFQT------------------------KIVDK 55 (152)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH--cCCcEEEEEeCCCceE------------------------EecCC
Confidence 799999999999854 44556666666665554 4668999888776111 11223
Q ss_pred CccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCC
Q psy12966 203 SQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAE 259 (741)
Q Consensus 203 T~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~ 259 (741)
+.+..++.+.+..+...|+ -....+|..++..+- .-++ .+++||++||..
T Consensus 56 ~~~~~~~~~~l~~~~~~gg-T~l~~al~~a~~~l~---~~~~---~~~~ivliTDG~ 105 (152)
T cd01462 56 TDDLEEPVEFLSGVQLGGG-TDINKALRYALELIE---RRDP---RKADIVLITDGY 105 (152)
T ss_pred cccHHHHHHHHhcCCCCCC-cCHHHHHHHHHHHHH---hcCC---CCceEEEECCCC
Confidence 4566666666765555443 444555655555442 2233 367999999964
No 47
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=97.51 E-value=0.0002 Score=69.08 Aligned_cols=105 Identities=20% Similarity=0.283 Sum_probs=69.2
Q ss_pred eeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeecCC
Q psy12966 124 DLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMSLS 203 (741)
Q Consensus 124 Dly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~lT 203 (741)
|++||+|.|+||....+.+|.....++ +.++++-++.+.+|-+.+. ++. | +..+.+
T Consensus 2 ~vvilvD~S~Sm~g~~~~~k~al~~~l---~~L~~~d~fnii~f~~~~~-~~~---~-----------------~~~~~~ 57 (155)
T PF13768_consen 2 DVVILVDTSGSMSGEKELVKDALRAIL---RSLPPGDRFNIIAFGSSVR-PLF---P-----------------GLVPAT 57 (155)
T ss_pred eEEEEEeCCCCCCCcHHHHHHHHHHHH---HhCCCCCEEEEEEeCCEee-Ecc---h-----------------hHHHHh
Confidence 899999999999999966777666555 4567777999999998633 221 1 112223
Q ss_pred -ccHHHHHHhccceee-ccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCC
Q psy12966 204 -QDTSRFSAQVKGANV-SGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEF 260 (741)
Q Consensus 204 -~d~~~F~~~v~~~~i-sgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~ 260 (741)
.+.....++|+.+.. .|+-| ..+.|.+.+... =+++..+.|||+||..+
T Consensus 58 ~~~~~~a~~~I~~~~~~~G~t~-l~~aL~~a~~~~-------~~~~~~~~IilltDG~~ 108 (155)
T PF13768_consen 58 EENRQEALQWIKSLEANSGGTD-LLAALRAALALL-------QRPGCVRAIILLTDGQP 108 (155)
T ss_pred HHHHHHHHHHHHHhcccCCCcc-HHHHHHHHHHhc-------ccCCCccEEEEEEeccC
Confidence 466778888888887 55533 333333333221 23466888888999875
No 48
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=97.45 E-value=0.0014 Score=69.97 Aligned_cols=138 Identities=13% Similarity=0.159 Sum_probs=79.8
Q ss_pred eccCCCcceeEEeecCCCChHHhH-HH--HHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCC
Q psy12966 116 AQAEDYPVDLYYLMDLSNSMRDDK-DR--LSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAA 192 (741)
Q Consensus 116 ~~~~~~pvDly~LmDlS~SM~ddl-~~--lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~ 192 (741)
..+..-..++++++|.|.||...- .. +.++ ..|.+.|+.+ +.-|+|+.+|...+ +
T Consensus 54 tkpskr~~qIvlaID~S~SM~~~~~~~~aleak-~lIs~al~~L-e~g~vgVv~Fg~~~---~----------------- 111 (266)
T cd01460 54 TKPAKRDYQILIAIDDSKSMSENNSKKLALESL-CLVSKALTLL-EVGQLGVCSFGEDV---Q----------------- 111 (266)
T ss_pred ccCCccCceEEEEEecchhcccccccccHHHHH-HHHHHHHHhC-cCCcEEEEEeCCCc---e-----------------
Confidence 344556799999999999997631 11 1111 1333334333 55899999999852 1
Q ss_pred CcceeeeecCCccHHH--HHHhccceeeccCCCCCcchHHHHHHHHhcccccccc---CCc---cEEEEEecCCC--CCc
Q psy12966 193 PYGYHNVMSLSQDTSR--FSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWR---DRA---RRLLVFSTDAE--FHH 262 (741)
Q Consensus 193 ~f~f~~~l~lT~d~~~--F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR---~~a---~rliv~~TDa~--~H~ 262 (741)
.++|||+|.+. +...++...+....- ....||..|+ +.+.=+ ..+ .|+||++||.. +|.
T Consensus 112 -----~v~Plt~d~~~~a~~~~l~~~~f~~~~T---ni~~aL~~a~---~~f~~~~~~~~s~~~~qlilLISDG~~~~~e 180 (266)
T cd01460 112 -----ILHPFDEQFSSQSGPRILNQFTFQQDKT---DIANLLKFTA---QIFEDARTQSSSGSLWQLLLIISDGRGEFSE 180 (266)
T ss_pred -----EeCCCCCCchhhHHHHHhCcccCCCCCC---cHHHHHHHHH---HHHHhhhccccccccccEEEEEECCCcccCc
Confidence 34667777664 433443322221111 1233333333 222111 111 38999999988 443
Q ss_pred CCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecc
Q psy12966 263 AGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAE 319 (741)
Q Consensus 263 agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~ 319 (741)
.. ...+++.+++++|.++|.+-..
T Consensus 181 ~~---------------------------------~~~~~r~a~e~~i~l~~I~ld~ 204 (266)
T cd01460 181 GA---------------------------------QKVRLREAREQNVFVVFIIIDN 204 (266)
T ss_pred cH---------------------------------HHHHHHHHHHcCCeEEEEEEcC
Confidence 21 3456889999999999998755
No 49
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=97.44 E-value=9.5e-05 Score=53.85 Aligned_cols=25 Identities=48% Similarity=1.038 Sum_probs=23.7
Q ss_pred CCCCCCeEEe--CceeeeCCCccCCcc
Q psy12966 459 PNCSGFGTFK--CGLCECDQSHFGRRC 483 (741)
Q Consensus 459 ~~Csg~G~c~--cG~C~C~~G~~G~~C 483 (741)
..|++||+|. +|+|.|++||+|+.|
T Consensus 6 ~~C~~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 6 NICSGHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred CccCCCCEEeCCCCEEECCCCCcCCCC
Confidence 5799999999 999999999999987
No 50
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.41 E-value=0.0023 Score=75.54 Aligned_cols=168 Identities=13% Similarity=0.103 Sum_probs=99.0
Q ss_pred cceeEEeecCCCChHH-hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeee
Q psy12966 122 PVDLYYLMDLSNSMRD-DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVM 200 (741)
Q Consensus 122 pvDly~LmDlS~SM~d-dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l 200 (741)
...++||+|.|+||.. -++.+|..+..|+..+ ....=++|+..|.+... ...+
T Consensus 407 ~~~v~fvvD~SGSM~~~rl~~aK~av~~Ll~~~--~~~~D~v~Li~F~~~~a------------------------~~~l 460 (589)
T TIGR02031 407 GRLLIFVVDASGSAAVARMSEAKGAVELLLGEA--YVHRDQVSLIAFRGTAA------------------------EVLL 460 (589)
T ss_pred CceEEEEEECCCCCChHHHHHHHHHHHHHHHhh--ccCCCEEEEEEECCCCc------------------------eEEC
Confidence 5779999999999964 5666777766666432 22344899999976420 1235
Q ss_pred cCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCccc
Q psy12966 201 SLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCH 280 (741)
Q Consensus 201 ~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Ch 280 (741)
++|.+...+...|..+...|+-. ..+||..|+---.+ .++...++.|||+||...-..-+|.+.|. .|
T Consensus 461 p~t~~~~~~~~~L~~l~~gGgTp----L~~gL~~A~~~~~~-~~~~~~~~~ivllTDG~~nv~~~~~~~~~-~~------ 528 (589)
T TIGR02031 461 PPSRSVEQAKRRLDVLPGGGGTP----LAAGLAAAFQTALQ-ARSSGGTPTIVLITDGRGNIPLDGDPESI-KA------ 528 (589)
T ss_pred CCCCCHHHHHHHHhcCCCCCCCc----HHHHHHHHHHHHHH-hcccCCceEEEEECCCCCCCCCCcccccc-cc------
Confidence 67888899998998887766522 23333333310011 23445678999999997654433221110 00
Q ss_pred ccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecch-h--hhHHHHhhcccCcee
Q psy12966 281 MDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQ-I--GVYERLKTHIEGSSS 336 (741)
Q Consensus 281 l~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~~-~--~~Y~~l~~~i~gs~v 336 (741)
+ +..... .+..+.+.+.+.+|..++.-+... . ..-++|++...+...
T Consensus 529 ----~-~~~~~~----~~~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA~~~~g~y~ 578 (589)
T TIGR02031 529 ----D-REQAAE----EALALARKIREAGMPALVIDTAMRFVSTGFAQKLARKMGAHYI 578 (589)
T ss_pred ----c-chhHHH----HHHHHHHHHHhcCCeEEEEeCCCCCccchHHHHHHHhcCCcEE
Confidence 0 000000 245678899999988776656532 2 234566766665433
No 51
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=97.40 E-value=0.0076 Score=71.31 Aligned_cols=219 Identities=16% Similarity=0.181 Sum_probs=120.5
Q ss_pred EEEEEEecc------CCCcceeEEeecCCCChHH-hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCccc
Q psy12966 110 RMVVDYAQA------EDYPVDLYYLMDLSNSMRD-DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKN 182 (741)
Q Consensus 110 ~~~~~~~~~------~~~pvDly~LmDlS~SM~d-dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~ 182 (741)
-|.+.+.++ ...|.+++||+|.|+||.. +++.+|..+..+ |+.+..+-++++..|.+....-|.
T Consensus 253 y~~~~~~pp~~~~~~~~~p~~vvfvlD~SgSM~g~~i~~ak~al~~~---l~~L~~~d~~~ii~F~~~~~~~~~------ 323 (596)
T TIGR03788 253 YGLAMVMPPTEAAVAQVLPRELVFVIDTSGSMAGESIEQAKSALLLA---LDQLRPGDRFNIIQFDSDVTLLFP------ 323 (596)
T ss_pred EEEEEEeCCCccccccCCCceEEEEEECCCCCCCccHHHHHHHHHHH---HHhCCCCCEEEEEEECCcceEecc------
Confidence 345555554 3557999999999999975 477777655443 456667789999999886432110
Q ss_pred ccCCCCCCCCCcceeeeecCC-ccHHHHHHhccceeeccCCCCCcchHHHHHHHHhcccccccc-CCccEEEEEecCCCC
Q psy12966 183 LLEPCAGCAAPYGYHNVMSLS-QDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWR-DRARRLLVFSTDAEF 260 (741)
Q Consensus 183 l~~Pc~~c~~~f~f~~~l~lT-~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR-~~a~rliv~~TDa~~ 260 (741)
...+.+ .+..+..+.|+.+...|+- ..++||..|+ +..... ++..|.|||+||...
T Consensus 324 ---------------~~~~~~~~~~~~a~~~i~~l~a~GgT----~l~~aL~~a~---~~~~~~~~~~~~~iillTDG~~ 381 (596)
T TIGR03788 324 ---------------VPVPATAHNLARARQFVAGLQADGGT----EMAGALSAAL---RDDGPESSGALRQVVFLTDGAV 381 (596)
T ss_pred ---------------ccccCCHHHHHHHHHHHhhCCCCCCc----cHHHHHHHHH---HhhcccCCCceeEEEEEeCCCC
Confidence 011122 3456667778777776652 2556665555 222222 245678899999742
Q ss_pred CcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhc-CccEEEEEecc---hhhhHHHHhhcccCcee
Q psy12966 261 HHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQN-SINLIFAVTAE---QIGVYERLKTHIEGSSS 336 (741)
Q Consensus 261 H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~-~I~~Ifavt~~---~~~~Y~~l~~~i~gs~v 336 (741)
+| ..++.+.++++ +=..||++.-. ....-+.|++. +++..
T Consensus 382 ---~~--------------------------------~~~~~~~~~~~~~~~ri~tvGiG~~~n~~lL~~lA~~-g~G~~ 425 (596)
T TIGR03788 382 ---GN--------------------------------EDALFQLIRTKLGDSRLFTVGIGSAPNSYFMRKAAQF-GRGSF 425 (596)
T ss_pred ---CC--------------------------------HHHHHHHHHHhcCCceEEEEEeCCCcCHHHHHHHHHc-CCCEE
Confidence 10 11233333222 12366666422 22233445544 33333
Q ss_pred eeccCCcchHHHHHHHHhhhccceEEeeeCCCCceEEEEEeecCC-CCCCCCCCCCCCCcccCcEEEEEEEE
Q psy12966 337 GTLTNDSSNVVDLVKDQYNKISSSVEMKDTSSSAVKVTYHSKCLN-KDGPSKPTAKCDGLKVGTVVHFEIDI 407 (741)
Q Consensus 337 g~L~~dSsNiv~lI~~aY~~i~s~v~l~~~~~~~~~v~~~s~C~~-~~~~~~~~~~C~~v~~g~~V~F~v~v 407 (741)
.. ..+.+.+.+.+.+.+.++.+.+.- .+++.|.. .. ...++ ..-.++..|+.+.+-..+
T Consensus 426 ~~-i~~~~~~~~~~~~~l~~~~~p~l~------~v~v~~~~--~~~~~v~P---~~~p~L~~g~~l~v~g~~ 485 (596)
T TIGR03788 426 TF-IGSTDEVQRKMSQLFAKLEQPALT------DIALTFDN--GNAADVYP---SPIPDLYRGEPLQIAIKL 485 (596)
T ss_pred EE-CCCHHHHHHHHHHHHHhhcCeEEE------EEEEEEcC--Cccceecc---CCCccccCCCEEEEEEEe
Confidence 33 345667888888888876544421 23344421 10 01111 245577888877766653
No 52
>KOG0994|consensus
Probab=97.11 E-value=0.0013 Score=79.40 Aligned_cols=57 Identities=26% Similarity=0.603 Sum_probs=32.0
Q ss_pred ccceeEEEecccCCC-ccCCCCCCCCCC-CCCCCCCCCeEEeCceeeeCCCccCCccc-ccC
Q psy12966 429 GIDETLRVDLEMQCE-CPCEVDGHPSFV-RNSPNCSGFGTFKCGLCECDQSHFGRRCE-CDA 487 (741)
Q Consensus 429 g~~e~l~v~l~~~C~-C~Ce~~~~~~~~-~~s~~Csg~G~c~cG~C~C~~G~~G~~Ce-C~~ 487 (741)
||-..-.+-....|. |+|... |... .-...|+-.-.=.-=+|.|.+||.|..|+ |-.
T Consensus 893 GyyGdP~lg~g~~CrPCpCP~g--p~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~RCe~CA~ 952 (1758)
T KOG0994|consen 893 GYYGDPRLGSGIGCRPCPCPDG--PASGRQHADSCYLDTRTQQIVCHCQEGYSGSRCEICAD 952 (1758)
T ss_pred cccCCcccCCCCCCCCCCCCCC--CccchhccccccccccccceeeecccCccccchhhhcc
Confidence 343333555667785 888864 1111 11234543211122379999999999997 543
No 53
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=97.07 E-value=0.0042 Score=63.91 Aligned_cols=147 Identities=19% Similarity=0.212 Sum_probs=83.8
Q ss_pred eEEeecCCCChH--------HhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcce
Q psy12966 125 LYYLMDLSNSMR--------DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGY 196 (741)
Q Consensus 125 ly~LmDlS~SM~--------ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f 196 (741)
+.||+|+|.||. ..++..++.+.++++..--..++=++|+..|......+ +.+|
T Consensus 4 ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~------------------~~~~ 65 (218)
T cd01458 4 VVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKN------------------PVGY 65 (218)
T ss_pred EEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCC------------------cCCC
Confidence 689999999995 34566666666665543113456799999888753221 1234
Q ss_pred eee---ecC-CccHHHHHHhccceeeccCC-------CCCc-chHHHHHHHHhccccccccCCccEEEEEecCCCCCcCC
Q psy12966 197 HNV---MSL-SQDTSRFSAQVKGANVSGNL-------DGPE-GGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAG 264 (741)
Q Consensus 197 ~~~---l~l-T~d~~~F~~~v~~~~isgn~-------D~PE-~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~ag 264 (741)
+|+ .+| +.+........+-+. .+.. ..++ ...+||..|.---.. +......|.|||+||+.-+.++
T Consensus 66 ~~i~v~~~l~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~-~~~~~~~k~IvL~TDg~~p~~~ 143 (218)
T cd01458 66 ENIYVLLDLDTPGAERVEDLKELIE-PGGLSFAGQVGDSGQVSLSDALWVCLDLFSK-GKKKKSHKRIFLFTNNDDPHGG 143 (218)
T ss_pred CceEEeecCCCCCHHHHHHHHHHhh-cchhhhcccCCCCCCccHHHHHHHHHHHHHh-ccccccccEEEEECCCCCCCCC
Confidence 443 344 556555444433222 1211 2233 255666655532222 2344567888899998755544
Q ss_pred CCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEe
Q psy12966 265 DGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVT 317 (741)
Q Consensus 265 Dg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt 317 (741)
|+. +...+.++++.|.+.+|.+.+...
T Consensus 144 ~~~--------------------------~~~~~~~~a~~l~~~gI~i~~i~i 170 (218)
T cd01458 144 DSI--------------------------KDSQAAVKAEDLKDKGIELELFPL 170 (218)
T ss_pred CHH--------------------------HHHHHHHHHHHHHhCCcEEEEEec
Confidence 321 111256788889888998775444
No 54
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=96.76 E-value=0.0061 Score=61.71 Aligned_cols=108 Identities=13% Similarity=0.055 Sum_probs=62.8
Q ss_pred cceeEEeecCCCChHHh--------HHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCC
Q psy12966 122 PVDLYYLMDLSNSMRDD--------KDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAP 193 (741)
Q Consensus 122 pvDly~LmDlS~SM~dd--------l~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~ 193 (741)
+-|++|++|.|+||... ++..|.++..|+..+...- .-++++..|-+....
T Consensus 2 ~~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D-~d~i~l~~f~~~~~~-------------------- 60 (199)
T cd01457 2 NRDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYD-SDGITVYLFSGDFRR-------------------- 60 (199)
T ss_pred CcCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcC-CCCeEEEEecCCccc--------------------
Confidence 45999999999999853 6788888888887766552 334666666554210
Q ss_pred cceeeeecCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhc-ccc-ccccCC-ccEEEEEecCCCCC
Q psy12966 194 YGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVC-KEE-IGWRDR-ARRLLVFSTDAEFH 261 (741)
Q Consensus 194 f~f~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC-~~~-igWR~~-a~rliv~~TDa~~H 261 (741)
..+++ ...+.+.+.+....|+- ....||.+|+.= ... -+++.. ..++||++||..+|
T Consensus 61 -----~~~~~--~~~v~~~~~~~~p~G~T----~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~ 120 (199)
T cd01457 61 -----YDNVN--SSKVDQLFAENSPDGGT----NLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPD 120 (199)
T ss_pred -----cCCcC--HHHHHHHHhcCCCCCcC----cHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCC
Confidence 11233 56666666555444442 233444444310 000 011111 26899999999876
No 55
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=96.53 E-value=0.0015 Score=47.58 Aligned_cols=24 Identities=29% Similarity=0.583 Sum_probs=20.8
Q ss_pred cccCCCceec--CCCCccCCCCCceecCc
Q psy12966 506 MECSGRGNCL--CNQKSLDNIVNVIISHV 532 (741)
Q Consensus 506 ~~Csg~G~C~--cG~C~C~~~~~~~~G~~ 532 (741)
.+|++||+|+ +|+|+|.. +|+|++
T Consensus 6 ~~C~~~G~C~~~~g~C~C~~---g~~G~~ 31 (32)
T PF07974_consen 6 NICSGHGTCVSPCGRCVCDS---GYTGPD 31 (32)
T ss_pred CccCCCCEEeCCCCEEECCC---CCcCCC
Confidence 5799999999 89999964 689988
No 56
>KOG4289|consensus
Probab=96.48 E-value=0.0017 Score=79.82 Aligned_cols=70 Identities=23% Similarity=0.423 Sum_probs=51.2
Q ss_pred eeeeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceec----CCCCccCCCCCceecCcccccee------ec
Q psy12966 471 LCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCL----CNQKSLDNIVNVIISHVIVTTEC------CV 540 (741)
Q Consensus 471 ~C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~----cG~C~C~~~~~~~~G~~~~~Cec------C~ 540 (741)
+|.|.+||+|++||... +.|. +..|+++|.|. -.+|+|.. +|+|+. ||. |.
T Consensus 1223 rCrCPpGFTgd~CeTei--------DlCY-----s~pC~nng~C~srEggYtCeCrp---g~tGeh---CEvs~~agrCv 1283 (2531)
T KOG4289|consen 1223 RCRCPPGFTGDYCETEI--------DLCY-----SGPCGNNGRCRSREGGYTCECRP---GFTGEH---CEVSARAGRCV 1283 (2531)
T ss_pred eEeCCCCCCcccccchh--------Hhhh-----cCCCCCCCceEEecCceeEEecC---Cccccc---eeeecccCccc
Confidence 69999999999999754 4687 35799999997 45799954 799999 997 53
Q ss_pred C-CCCCceeeec----C-ceEecCC
Q psy12966 541 L-DLNTVGACVA----S-AIVKTAG 559 (741)
Q Consensus 541 ~-~~gG~G~C~c----g-~C~C~~G 559 (741)
. .+-.-|+|+- | .|+|..|
T Consensus 1284 pGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1284 PGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred cceecCCCEEeecCCCceeccCCCc
Confidence 2 2223466653 2 4677665
No 57
>KOG0994|consensus
Probab=96.38 E-value=0.01 Score=72.05 Aligned_cols=39 Identities=36% Similarity=0.912 Sum_probs=28.2
Q ss_pred CccCCCCCCCCCCCCCCCCCCCeEEeCceeeeCCCccCCccc-ccCCCC
Q psy12966 443 ECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCE-CDAESS 490 (741)
Q Consensus 443 ~C~Ce~~~~~~~~~~s~~Csg~G~c~cG~C~C~~G~~G~~Ce-C~~~~~ 490 (741)
.|+|..+| .-|.+|+-|| |.|.|.|+-.|+.|. |-.+..
T Consensus 764 ~CnCnptG-----SlS~vCn~~G----GqCqCkPnVVGR~CdqCApGty 803 (1758)
T KOG0994|consen 764 MCNCNPTG-----SLSSVCNPNG----GQCQCKPNVVGRRCDQCAPGTY 803 (1758)
T ss_pred ccccCCCc-----cccccccCCC----ceecccCccccccccccCCccc
Confidence 36676552 3466788776 789999999999996 755443
No 58
>PLN00162 transport protein sec23; Provisional
Probab=96.22 E-value=0.17 Score=61.88 Aligned_cols=194 Identities=14% Similarity=0.147 Sum_probs=107.3
Q ss_pred CCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCc-----------------cc
Q psy12966 120 DYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVP-----------------KN 182 (741)
Q Consensus 120 ~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p-----------------~~ 182 (741)
..|.=.+||+|+|.. ..+++.|| ..|.+.|..+..+.++||.+|-...- |.+... ++
T Consensus 122 ~~pp~fvFvID~s~~-~~~l~~lk---~sl~~~L~~LP~~a~VGlITF~s~V~--~~~L~~~~~~~~~Vf~g~k~~t~~~ 195 (761)
T PLN00162 122 PSPPVFVFVVDTCMI-EEELGALK---SALLQAIALLPENALVGLITFGTHVH--VHELGFSECSKSYVFRGNKEVSKDQ 195 (761)
T ss_pred CCCcEEEEEEecchh-HHHHHHHH---HHHHHHHHhCCCCCEEEEEEECCEEE--EEEcCCCCCcceEEecCCccCCHHH
Confidence 346679999999964 44555555 58888888899999999999987541 111100 01
Q ss_pred ccC--------CCCCC-------CC---CcceeeeecCCccHHHHHHhcccee-ec---cCCCCCcchHHHHHHHHhccc
Q psy12966 183 LLE--------PCAGC-------AA---PYGYHNVMSLSQDTSRFSAQVKGAN-VS---GNLDGPEGGFDAIMQAIVCKE 240 (741)
Q Consensus 183 l~~--------Pc~~c-------~~---~f~f~~~l~lT~d~~~F~~~v~~~~-is---gn~D~PE~~ldAl~qa~vC~~ 240 (741)
++. +.+.. ++ |..=+-.+++.+....+...+..+. .. .+.-.|+..+-+.++||+---
T Consensus 196 l~~~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL 275 (761)
T PLN00162 196 ILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLL 275 (761)
T ss_pred HHHHhccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHH
Confidence 100 00000 00 0011223445443333444444432 11 223457787887788775211
Q ss_pred cccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccC--CC--CccccccCCCCCHHHHHHHHHhcCccE-EEE
Q psy12966 241 EIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDR--NG--MYTHSTVQDYPSISQINMKVKQNSINL-IFA 315 (741)
Q Consensus 241 ~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~--~~--~Y~~s~~~DYPSv~ql~~~l~e~~I~~-Ifa 315 (741)
+.-.....-|||+|++=. =..|.|++.+--..+..+-|.|- +. .|..+. +| -.+|+..+.+++|.+ |||
T Consensus 276 ~~~~~~~gGrI~~F~sgp--pT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~--~f--Y~~la~~~~~~gisvDlF~ 349 (761)
T PLN00162 276 GACVPGTGARIMAFVGGP--CTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAV--KF--YEGLAKQLVAQGHVLDVFA 349 (761)
T ss_pred hhccCCCceEEEEEeCCC--CCCCCceeecccccccccCccccccchhhhcchHH--HH--HHHHHHHHHHcCceEEEEE
Confidence 101112346899999733 35688888665444555566541 11 122221 22 467888888888876 688
Q ss_pred EecchhhhHH
Q psy12966 316 VTAEQIGVYE 325 (741)
Q Consensus 316 vt~~~~~~Y~ 325 (741)
......++++
T Consensus 350 ~s~dqvglae 359 (761)
T PLN00162 350 CSLDQVGVAE 359 (761)
T ss_pred ccccccCHHH
Confidence 8877777764
No 59
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.10 E-value=0.013 Score=68.25 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=45.9
Q ss_pred EEEEeeCccEEEEEEEeccCCCcceeEEeecCCCChHHhHHHHHH-HHHHHHHHHHhhcCceeE-EeeEe
Q psy12966 100 SLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSA-LGDQLSASMQEVTSNFRL-GFGSF 167 (741)
Q Consensus 100 ~~~LR~G~~~~~~~~~~~~~~~pvDly~LmDlS~SM~ddl~~lk~-l~~~l~~~l~~~t~~~r~-GfgsF 167 (741)
++-.-|+++..|...-.... ...=+-+|||.|+||.+....|-. .+.-|++.|....-.++| ||-++
T Consensus 371 R~v~~p~~~~~Fk~e~~~~~-~D~~V~LLID~SGSM~~r~~~vA~~~a~iLa~aL~~~gIp~eVlGFtt~ 439 (600)
T TIGR01651 371 RVIIDPMQPLSFKQEEDTEF-RDTVVTLLIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTR 439 (600)
T ss_pred HHhcCCCCCcceeecccCCC-CCcEEEEEEECCccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEeeccc
Confidence 33333666666665543221 124456799999999999888766 588899999988766665 88665
No 60
>KOG1219|consensus
Probab=96.07 E-value=0.0097 Score=76.29 Aligned_cols=82 Identities=16% Similarity=0.297 Sum_probs=58.3
Q ss_pred cccCCCceec-----CCCCccCCCCCceecCcccccee----ecCCC-CCceeeec---C-ceEecCCcee-ccccc---
Q psy12966 506 MECSGRGNCL-----CNQKSLDNIVNVIISHVIVTTEC----CVLDL-NTVGACVA---S-AIVKTAGLVQ-RVTVA--- 567 (741)
Q Consensus 506 ~~Csg~G~C~-----cG~C~C~~~~~~~~G~~~~~Cec----C~~~~-gG~G~C~c---g-~C~C~~G~~G-~~~~~--- 567 (741)
..|-+.|+|. -.+|.|+. .|+|.. ||. |...- -..|+|.- | .|.|..||+| .|..+
T Consensus 3870 npCqhgG~C~~~~~ggy~CkCps---qysG~~---CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~~Gi~ 3943 (4289)
T KOG1219|consen 3870 NPCQHGGTCISQPKGGYKCKCPS---QYSGNH---CEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEARGIS 3943 (4289)
T ss_pred CcccCCCEecCCCCCceEEeCcc---cccCcc---cccccccccCCCCCCCCEEEecCCCeeEeCCCCccCceeeccccc
Confidence 4688889996 24699965 799999 998 64322 24689973 3 7999999999 44333
Q ss_pred cCCCCccccCccccCCcccccc--c--cccccccccccCCCCCcc
Q psy12966 568 PLMTPVYLLREERCARARESVS--A--VCANVLKIAREDIPAGSA 608 (741)
Q Consensus 568 ~C~~~~~~~~~~~Csg~G~C~c--G--~C~~~~~C~~~~~~gy~G 608 (741)
.| .. ..|..-|.|+. | .|. | .+||.|
T Consensus 3944 eC--s~-----n~C~~gg~C~n~~gsf~Cn----c----T~g~~g 3973 (4289)
T KOG1219|consen 3944 EC--SK-----NVCGTGGQCINIPGSFHCN----C----TPGILG 3973 (4289)
T ss_pred cc--cc-----ccccCCceeeccCCceEec----c----ChhHhc
Confidence 36 21 56777788874 6 777 8 777777
No 61
>KOG1219|consensus
Probab=95.61 E-value=0.012 Score=75.42 Aligned_cols=85 Identities=26% Similarity=0.491 Sum_probs=64.3
Q ss_pred CCCCCeEEeC----c-eeeeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceec----CCCCccCCCCCceec
Q psy12966 460 NCSGFGTFKC----G-LCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCL----CNQKSLDNIVNVIIS 530 (741)
Q Consensus 460 ~Csg~G~c~c----G-~C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~----cG~C~C~~~~~~~~G 530 (741)
-|..-|+|.- | .|.|.+-|.|..||-.. ..|. ...|-..|+|. --.|.|++ +|+|
T Consensus 3871 pCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~--------epC~-----snPC~~GgtCip~~n~f~CnC~~---gyTG 3934 (4289)
T KOG1219|consen 3871 PCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDL--------EPCA-----SNPCLTGGTCIPFYNGFLCNCPN---GYTG 3934 (4289)
T ss_pred cccCCCEecCCCCCceEEeCcccccCccccccc--------cccc-----CCCCCCCCEEEecCCCeeEeCCC---CccC
Confidence 4766777752 2 79999999999999754 4575 25688899997 23599976 7999
Q ss_pred Ccccccee-----ecCCCCC-ceeeec--C--ceEecCCceec
Q psy12966 531 HVIVTTEC-----CVLDLNT-VGACVA--S--AIVKTAGLVQR 563 (741)
Q Consensus 531 ~~~~~Cec-----C~~~~gG-~G~C~c--g--~C~C~~G~~G~ 563 (741)
+. ||- |.+.-.+ .|.|.. | .|.|.+||.|.
T Consensus 3935 ~~---Ce~~Gi~eCs~n~C~~gg~C~n~~gsf~CncT~g~~gr 3974 (4289)
T KOG1219|consen 3935 KR---CEARGISECSKNVCGTGGQCINIPGSFHCNCTPGILGR 3974 (4289)
T ss_pred ce---eecccccccccccccCCceeeccCCceEeccChhHhcc
Confidence 99 997 7654333 578863 6 79999999984
No 62
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=95.46 E-value=0.068 Score=55.42 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=35.4
Q ss_pred ceeEEeecCCCChHHhHHHHH-HHHHHHHHHHHhhcCceeE-EeeEee
Q psy12966 123 VDLYYLMDLSNSMRDDKDRLS-ALGDQLSASMQEVTSNFRL-GFGSFV 168 (741)
Q Consensus 123 vDly~LmDlS~SM~ddl~~lk-~l~~~l~~~l~~~t~~~r~-GfgsFv 168 (741)
.=+-+|+|.||||...-..+. ..+.-|++.|....-.+++ ||-++.
T Consensus 13 ~~VtlLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT~a 60 (219)
T PF11775_consen 13 TVVTLLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTTRA 60 (219)
T ss_pred eEEEEEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeecCC
Confidence 346689999999999655555 4578899999988766654 998874
No 63
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=95.46 E-value=0.16 Score=54.43 Aligned_cols=193 Identities=17% Similarity=0.239 Sum_probs=111.1
Q ss_pred cceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcc-----------------cc-
Q psy12966 122 PVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPK-----------------NL- 183 (741)
Q Consensus 122 pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~-----------------~l- 183 (741)
|.=.+||+|+|.. ..+ +..+...|.+.|..+..+.++||.+|-...- |.+..++ ++
T Consensus 3 pp~~vFviDvs~~-~~e---l~~l~~sl~~~L~~lP~~a~VGlITfd~~V~--~~~L~~~~~~~~~vf~g~~~~~~~~~~ 76 (267)
T cd01478 3 PPVFLFVVDTCMD-EEE---LDALKESLIMSLSLLPPNALVGLITFGTMVQ--VHELGFEECSKSYVFRGNKDYTAKQIQ 76 (267)
T ss_pred CCEEEEEEECccC-HHH---HHHHHHHHHHHHHhCCCCCEEEEEEECCEEE--EEEcCCCcCceeeeccCCccCCHHHHH
Confidence 5568999999985 334 4455578888999999999999999976531 1111110 00
Q ss_pred -----cCC------C--CCCCCCc---c-eeeeecCCccHHHHHHhccceeec----cCCCCCcchHHHHHHHHhccccc
Q psy12966 184 -----LEP------C--AGCAAPY---G-YHNVMSLSQDTSRFSAQVKGANVS----GNLDGPEGGFDAIMQAIVCKEEI 242 (741)
Q Consensus 184 -----~~P------c--~~c~~~f---~-f~~~l~lT~d~~~F~~~v~~~~is----gn~D~PE~~ldAl~qa~vC~~~i 242 (741)
..| = ..-+.+| . =+-.+++.+....+.+.|+.+.-. .+.-.|+..+-+.++||..-=+-
T Consensus 77 ~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll~~ 156 (267)
T cd01478 77 DMLGLGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLEA 156 (267)
T ss_pred HHhccccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHHHHh
Confidence 000 0 0000111 1 122346666666666666665321 23456888887777777532122
Q ss_pred cccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCC---CccccccCCCCCHHHHHHHHHhcCccE-EEEEec
Q psy12966 243 GWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNG---MYTHSTVQDYPSISQINMKVKQNSINL-IFAVTA 318 (741)
Q Consensus 243 gWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~---~Y~~s~~~DYPSv~ql~~~l~e~~I~~-Ifavt~ 318 (741)
.++...-||++|.+=.+ ..|.|+|..--..+..+-|.|.+. .|.... .+| ..+|+..+.+++|.. ||+...
T Consensus 157 ~~~~~gGki~~F~sg~p--T~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a-~~f--Y~~la~~~~~~~vsvDlF~~s~ 231 (267)
T cd01478 157 CFPNTGARIMLFAGGPC--TVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKA-VKF--YDSLAKRLAANGHAVDIFAGCL 231 (267)
T ss_pred hcCCCCcEEEEEECCCC--CCCCceeeccccccccccccccccchhhhhhhH-HHH--HHHHHHHHHhCCeEEEEEeccc
Confidence 23334568999998777 458888865544455555554221 122111 122 356777777788765 577777
Q ss_pred chhhhHH
Q psy12966 319 EQIGVYE 325 (741)
Q Consensus 319 ~~~~~Y~ 325 (741)
...++++
T Consensus 232 d~vglae 238 (267)
T cd01478 232 DQVGLLE 238 (267)
T ss_pred cccCHHH
Confidence 7777764
No 64
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.05 E-value=0.053 Score=61.58 Aligned_cols=142 Identities=17% Similarity=0.135 Sum_probs=90.5
Q ss_pred ceeEEeecCCCChHHhHHHHHH-HHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeec
Q psy12966 123 VDLYYLMDLSNSMRDDKDRLSA-LGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMS 201 (741)
Q Consensus 123 vDly~LmDlS~SM~ddl~~lk~-l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~ 201 (741)
=.+|+|+|.||||..+.+.+-+ .+-.|++. .+-.|-++.+-.|.+ |+. .+.
T Consensus 273 GpvilllD~SGSM~G~~e~~AKAvalAl~~~--alaenR~~~~~lF~s----~~~----------------------~~e 324 (437)
T COG2425 273 GPVILLLDKSGSMSGFKEQWAKAVALALMRI--ALAENRDCYVILFDS----EVI----------------------EYE 324 (437)
T ss_pred CCEEEEEeCCCCcCCcHHHHHHHHHHHHHHH--HHHhccceEEEEecc----cce----------------------eee
Confidence 5789999999999999998654 44444443 334677888888888 221 122
Q ss_pred CCc---cHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCc
Q psy12966 202 LSQ---DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGL 278 (741)
Q Consensus 202 lT~---d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~ 278 (741)
++. ++.++.+.+.....+| -.++..+-+.+..+ ++..|.. + =|||+||.-+-.. |
T Consensus 325 l~~k~~~~~e~i~fL~~~f~GG--TD~~~~l~~al~~~---k~~~~~~-a--div~ITDg~~~~~-~------------- 382 (437)
T COG2425 325 LYEKKIDIEELIEFLSYVFGGG--TDITKALRSALEDL---KSRELFK-A--DIVVITDGEDERL-D------------- 382 (437)
T ss_pred ecCCccCHHHHHHHHhhhcCCC--CChHHHHHHHHHHh---hcccccC-C--CEEEEeccHhhhh-h-------------
Confidence 222 5566666555444433 77888888878887 6788985 3 3667888753221 1
Q ss_pred ccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecc-hhhhHHHHhhcc
Q psy12966 279 CHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAE-QIGVYERLKTHI 331 (741)
Q Consensus 279 Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~-~~~~Y~~l~~~i 331 (741)
|+ +.++.+..++.+...+....+. ..+.+...+..+
T Consensus 383 ---------------~~--~~~v~e~~k~~~~rl~aV~I~~~~~~~l~~Isd~~ 419 (437)
T COG2425 383 ---------------DF--LRKVKELKKRRNARLHAVLIGGYGKPGLMRISDHI 419 (437)
T ss_pred ---------------HH--HHHHHHHHHHhhceEEEEEecCCCCcccceeeeee
Confidence 11 7788888888888876544443 324454445443
No 65
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=95.04 E-value=0.051 Score=56.41 Aligned_cols=61 Identities=21% Similarity=0.203 Sum_probs=37.1
Q ss_pred EeeCccEEEEEEEec-cCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecc
Q psy12966 103 LRINEAYRMVVDYAQ-AEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDK 170 (741)
Q Consensus 103 LR~G~~~~~~~~~~~-~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk 170 (741)
+|.|.. .+.+.+++ ....|..|++|+|+||||.+.-.-+-.+...|....+ ++.+-.|.+.
T Consensus 38 ~r~~g~-~~~l~~r~~r~~~~~~lvvl~DvSGSM~~~s~~~l~~~~~l~~~~~------~~~~f~F~~~ 99 (222)
T PF05762_consen 38 LRTGGE-PLRLVRRRRRPRKPRRLVVLCDVSGSMAGYSEFMLAFLYALQRQFR------RVRVFVFSTR 99 (222)
T ss_pred HhcCCC-cceeeccccccCCCccEEEEEeCCCChHHHHHHHHHHHHHHHHhCC------CEEEEEEeee
Confidence 444332 44555555 4566779999999999999876554444443333322 4555556654
No 66
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=94.92 E-value=0.16 Score=52.17 Aligned_cols=138 Identities=17% Similarity=0.242 Sum_probs=75.6
Q ss_pred eEEeecCCCChHHhHHH--HHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeecC
Q psy12966 125 LYYLMDLSNSMRDDKDR--LSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMSL 202 (741)
Q Consensus 125 ly~LmDlS~SM~ddl~~--lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~l 202 (741)
+|+++|.||||...-.+ ++.++..++---..+-.+-.+=+-.|..+.- + .=++
T Consensus 4 V~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~---------~----------------~~~v 58 (200)
T PF10138_consen 4 VYLVLDISGSMRPLYKDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFD---------R----------------LPDV 58 (200)
T ss_pred EEEEEeCCCCCchhhhCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCC---------c----------------CCCc
Confidence 79999999999976654 5555555443333445566666655655411 1 1122
Q ss_pred Cc-cHHHHHHhc-cce---eeccCCCCCcchHHHHHHHHhccccccccCC--ccEEEEEecCCCCCcCCCCCccceecCC
Q psy12966 203 SQ-DTSRFSAQV-KGA---NVSGNLDGPEGGFDAIMQAIVCKEEIGWRDR--ARRLLVFSTDAEFHHAGDGKLGGIVKPN 275 (741)
Q Consensus 203 T~-d~~~F~~~v-~~~---~isgn~D~PE~~ldAl~qa~vC~~~igWR~~--a~rliv~~TDa~~H~agDg~L~Gi~~pn 275 (741)
|. |...+.+.+ .+. .-.|+-|.|.. |++++ +...|+.. .--+|||+||..++-
T Consensus 59 t~~~~~~~v~~~~~~~~~~~~~G~t~y~~v-----m~~v~--~~y~~~~~~~~P~~VlFiTDG~~~~------------- 118 (200)
T PF10138_consen 59 TLDNYEGYVDELHAGLPDWGRMGGTNYAPV-----MEDVL--DHYFKREPSDAPALVLFITDGGPDD------------- 118 (200)
T ss_pred CHHHHHHHHHHHhccccccCCCCCcchHHH-----HHHHH--HHHhhcCCCCCCeEEEEEecCCccc-------------
Confidence 22 223333332 222 22244454443 44433 34445533 256999999998663
Q ss_pred CCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEE----ecchhhhHHHHhh
Q psy12966 276 DGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAV----TAEQIGVYERLKT 329 (741)
Q Consensus 276 Dg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifav----t~~~~~~Y~~l~~ 329 (741)
-.++.++|.+..=.|||-. -...+..-++|-+
T Consensus 119 ----------------------~~~~~~~i~~as~~pifwqFVgiG~~~f~fL~kLD~ 154 (200)
T PF10138_consen 119 ----------------------RRAIEKLIREASDEPIFWQFVGIGDSNFGFLEKLDD 154 (200)
T ss_pred ----------------------hHHHHHHHHhccCCCeeEEEEEecCCcchHHHHhhc
Confidence 2446677777777777643 2344566667766
No 67
>KOG4260|consensus
Probab=94.86 E-value=0.019 Score=60.58 Aligned_cols=45 Identities=20% Similarity=0.603 Sum_probs=30.5
Q ss_pred eCCCccCCccc-ccCCCCCCcCcccCccCCCCccccCCCceec-------CCCCccCCCCCceecCccccceee
Q psy12966 474 CDQSHFGRRCE-CDAESSQGITSTGCKADANSTMECSGRGNCL-------CNQKSLDNIVNVIISHVIVTTECC 539 (741)
Q Consensus 474 C~~G~~G~~Ce-C~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~-------cG~C~C~~~~~~~~G~~~~~CecC 539 (741)
|..|.+|++|. ||-. . ...|+|+|.|. .|.|.|.. +|.|.. |..|
T Consensus 132 Cp~gtyGpdCl~Cpgg-------------s--er~C~GnG~C~GdGsR~GsGkCkC~~---GY~Gp~---C~~C 184 (350)
T KOG4260|consen 132 CPDGTYGPDCLQCPGG-------------S--ERPCFGNGSCHGDGSREGSGKCKCET---GYTGPL---CRYC 184 (350)
T ss_pred cCCCCcCCccccCCCC-------------C--cCCcCCCCcccCCCCCCCCCcccccC---CCCCcc---cccc
Confidence 67899999996 5421 1 13477777774 47788853 688888 7654
No 68
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=94.01 E-value=0.6 Score=49.26 Aligned_cols=192 Identities=16% Similarity=0.308 Sum_probs=106.6
Q ss_pred cceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCc---eeEEeeEeecccccCccccC-----cc-----cccCCCC
Q psy12966 122 PVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSN---FRLGFGSFVDKVVMPYVSMV-----PK-----NLLEPCA 188 (741)
Q Consensus 122 pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~---~r~GfgsFvDk~~~P~~~~~-----p~-----~l~~Pc~ 188 (741)
|.=.+||+|+|..=-. -.-+..+...|.+.|..+..+ .++||-+|-...- |.+.. |. ++.+|=
T Consensus 3 pp~~~FvIDvs~~a~~-~g~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v~--~y~l~~~~~~~q~~vv~dl~d~f- 78 (244)
T cd01479 3 PAVYVFLIDVSYNAIK-SGLLATACEALLSNLDNLPGDDPRTRVGFITFDSTLH--FFNLKSSLEQPQMMVVSDLDDPF- 78 (244)
T ss_pred CCEEEEEEEccHHHHh-hChHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeEE--EEECCCCCCCCeEEEeeCccccc-
Confidence 6678999999874321 113555556666777777655 9999999987542 22211 11 122221
Q ss_pred CCCCCcceeeeecCCccHHHHHHhcccee-eccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCC
Q psy12966 189 GCAAPYGYHNVMSLSQDTSRFSAQVKGAN-VSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGK 267 (741)
Q Consensus 189 ~c~~~f~f~~~l~lT~d~~~F~~~v~~~~-isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~ 267 (741)
-|+.-+-.+++.+..+.+.+.+.++. ...+...|+..+-+.++||+ .-+. +-.=||++|.+=.+- -|.|+
T Consensus 79 ---~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~--~lL~--~~GGkIi~f~s~~pt--~GpG~ 149 (244)
T cd01479 79 ---LPLPDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAF--LLLK--ETGGKIIVFQSSLPT--LGAGK 149 (244)
T ss_pred ---CCCCcceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHH--HHHH--hcCCEEEEEeCCCCC--cCCcc
Confidence 11222234667776666666666652 33455667777777777765 3444 223578888875553 45666
Q ss_pred ccceecCCCCc--ccccCCCCccccccCCCCCHHHHHHHHHhcCccE-EEEEecchhhhH--HHHhhcccC
Q psy12966 268 LGGIVKPNDGL--CHMDRNGMYTHSTVQDYPSISQINMKVKQNSINL-IFAVTAEQIGVY--ERLKTHIEG 333 (741)
Q Consensus 268 L~Gi~~pnDg~--Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~-Ifavt~~~~~~Y--~~l~~~i~g 333 (741)
|..- .+++ -|-++...+..+ .+| ..+|+..+.+++|.+ ||+.+....+++ ..|+++-+|
T Consensus 150 l~~~---~~~~~~~~~~e~~~~~p~--~~f--Y~~la~~~~~~~isvDlF~~~~~~~dla~l~~l~~~TGG 213 (244)
T cd01479 150 LKSR---EDPKLLSTDKEKQLLQPQ--TDF--YKKLALECVKSQISVDLFLFSNQYVDVATLGCLSRLTGG 213 (244)
T ss_pred cccC---ccccccCchhhhhhcCcc--hHH--HHHHHHHHHHcCeEEEEEEccCcccChhhhhhhhhhcCc
Confidence 6432 1211 111111111111 122 568899999999876 577777655554 334444444
No 69
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=93.88 E-value=0.26 Score=49.98 Aligned_cols=54 Identities=22% Similarity=0.364 Sum_probs=38.7
Q ss_pred ceeEEeecCCCChHHh-HHHHHHHHHHHHHHHHhh---cCceeEEeeEeec--ccccCcc
Q psy12966 123 VDLYYLMDLSNSMRDD-KDRLSALGDQLSASMQEV---TSNFRLGFGSFVD--KVVMPYV 176 (741)
Q Consensus 123 vDly~LmDlS~SM~dd-l~~lk~l~~~l~~~l~~~---t~~~r~GfgsFvD--k~~~P~~ 176 (741)
+=+|+|+|.|+||... |+.|..-.+.|+++|++= -..+.+++.+|-- +...||+
T Consensus 4 lP~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~ 63 (207)
T COG4245 4 LPCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFT 63 (207)
T ss_pred CCEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechh
Confidence 4579999999999765 677777778888888753 2467888877753 3344444
No 70
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=93.55 E-value=0.99 Score=47.27 Aligned_cols=184 Identities=18% Similarity=0.239 Sum_probs=95.6
Q ss_pred cceeEEeecCCCC-h-HHhHHHHHHHHHHHHHHHHhhc--CceeEEeeEeecccccCccccC----cc-----cccCCCC
Q psy12966 122 PVDLYYLMDLSNS-M-RDDKDRLSALGDQLSASMQEVT--SNFRLGFGSFVDKVVMPYVSMV----PK-----NLLEPCA 188 (741)
Q Consensus 122 pvDly~LmDlS~S-M-~ddl~~lk~l~~~l~~~l~~~t--~~~r~GfgsFvDk~~~P~~~~~----p~-----~l~~Pc~ 188 (741)
|.=++||+|+|.. . .+.++.+++ .|.+.|..+. ++.||||.+| |..+.=|.-.. |. .+++|-
T Consensus 3 pp~~vFvID~s~~ai~~~~l~~~~~---sl~~~l~~lp~~~~~~igiITf-~~~V~~~~~~~~~~~~~~~v~~dl~d~f- 77 (239)
T cd01468 3 PPVFVFVIDVSYEAIKEGLLQALKE---SLLASLDLLPGDPRARVGLITY-DSTVHFYNLSSDLAQPKMYVVSDLKDVF- 77 (239)
T ss_pred CCEEEEEEEcchHhccccHHHHHHH---HHHHHHHhCCCCCCcEEEEEEe-CCeEEEEECCCCCCCCeEEEeCCCccCc-
Confidence 5667999999985 2 345555555 5555566666 8999999999 55443221110 11 122221
Q ss_pred CCCCCcceeeeecCCccHHHHHHhccceeec-cC--CCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCC
Q psy12966 189 GCAAPYGYHNVMSLSQDTSRFSAQVKGANVS-GN--LDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGD 265 (741)
Q Consensus 189 ~c~~~f~f~~~l~lT~d~~~F~~~v~~~~is-gn--~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agD 265 (741)
. |+.-...+++.+..+.+.+.+.++.-. .+ --.|+..+-+.++||. .-+.=+...-|+++|.+=.+ ..|.
T Consensus 78 -~--p~~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~--~ll~~~~~gGkI~~f~sg~p--t~Gp 150 (239)
T cd01468 78 -L--PLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAF--LLLKGTFAGGRIIVFQGGLP--TVGP 150 (239)
T ss_pred -C--CCcCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHH--HHHhhcCCCceEEEEECCCC--CCCC
Confidence 0 112222355666666666666665422 22 3445555555555554 22222212457888877544 3455
Q ss_pred CCccceecCCCCcccccCCC--CccccccCCCCCHHHHHHHHHhcCccE-EEEEecchhhhH
Q psy12966 266 GKLGGIVKPNDGLCHMDRNG--MYTHSTVQDYPSISQINMKVKQNSINL-IFAVTAEQIGVY 324 (741)
Q Consensus 266 g~L~Gi~~pnDg~Chl~~~~--~Y~~s~~~DYPSv~ql~~~l~e~~I~~-Ifavt~~~~~~Y 324 (741)
|++.. .+..=++..+. .|... ..+| ..+|...+.+++|.+ ||+......+++
T Consensus 151 G~l~~----~~~~~~~~~~~e~~~~~~-a~~f--Y~~la~~~~~~~isvdlF~~~~~~~dl~ 205 (239)
T cd01468 151 GKLKS----REDKEPIRSHDEAQLLKP-ATKF--YKSLAKECVKSGICVDLFAFSLDYVDVA 205 (239)
T ss_pred Ccccc----CcccccCCCccchhcccc-cHHH--HHHHHHHHHHcCeEEEEEeccccccCHH
Confidence 66543 22222222111 11111 1122 467888888888876 455555555554
No 71
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=93.20 E-value=0.44 Score=45.33 Aligned_cols=93 Identities=13% Similarity=0.157 Sum_probs=53.5
Q ss_pred eEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeecCCc
Q psy12966 125 LYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMSLSQ 204 (741)
Q Consensus 125 ly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~lT~ 204 (741)
|++.+|.||||.++ .|++....+..-++.. ..++-+-.|-.+.... +.|+ +
T Consensus 1 i~vaiDtSGSis~~--~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~-------------------~~~~------~ 51 (126)
T PF09967_consen 1 IVVAIDTSGSISDE--ELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDV-------------------QVFR------S 51 (126)
T ss_pred CEEEEECCCCCCHH--HHHHHHHHHHHHHHhC--CCCEEEEEECCEeeee-------------------eEEe------c
Confidence 67899999999874 4556566665544444 4556665554442221 1121 1
Q ss_pred cHHHHHHhccce-eeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCC
Q psy12966 205 DTSRFSAQVKGA-NVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEF 260 (741)
Q Consensus 205 d~~~F~~~v~~~-~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~ 260 (741)
....+... ..+||+-.-...|+.+.+.. ....++|++||...
T Consensus 52 ----~~~~~~~~~~~GgGGTdf~pvf~~~~~~~----------~~~~~vi~fTDg~~ 94 (126)
T PF09967_consen 52 ----LEDELRDIKLKGGGGTDFRPVFEYLEENR----------PRPSVVIYFTDGEG 94 (126)
T ss_pred ----ccccccccccCCCCCCcchHHHHHHHhcC----------CCCCEEEEEeCCCC
Confidence 11112222 34566666677777766542 23568889999654
No 72
>KOG4289|consensus
Probab=93.13 E-value=0.11 Score=64.94 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=34.0
Q ss_pred ccCCCceec------CCCCccCCCCCceecCcccccee-----ecCCCCCc---eeeec--------------CceEecC
Q psy12966 507 ECSGRGNCL------CNQKSLDNIVNVIISHVIVTTEC-----CVLDLNTV---GACVA--------------SAIVKTA 558 (741)
Q Consensus 507 ~Csg~G~C~------cG~C~C~~~~~~~~G~~~~~Cec-----C~~~~gG~---G~C~c--------------g~C~C~~ 558 (741)
.|.+.|.|+ -..|.|+. +|+|++ ||- ||+..-|+ |.|.| |+|+|+.
T Consensus 1723 pc~~~g~Cv~sp~a~GY~C~C~~---g~~G~~---Ce~~~dq~CPrGWWG~P~CgpC~CavsKgfdp~CnKt~G~CqCKe 1796 (2531)
T KOG4289|consen 1723 PCENQGTCVRSPGAHGYTCECPP---GYTGPY---CELRADQPCPRGWWGFPTCGPCNCAVSKGFDPDCNKTNGQCQCKE 1796 (2531)
T ss_pred ccccCceeecCCCCCceeEECCC---cccCcc---hhhhccCCCCCcccCCCCccCccccccCCCCCCccccCcceeecc
Confidence 466667775 24699964 799999 998 99854333 44444 6888877
Q ss_pred Ccee
Q psy12966 559 GLVQ 562 (741)
Q Consensus 559 G~~G 562 (741)
.+.-
T Consensus 1797 ~hy~ 1800 (2531)
T KOG4289|consen 1797 NHYR 1800 (2531)
T ss_pred cccc
Confidence 6543
No 73
>KOG2807|consensus
Probab=93.00 E-value=1.7 Score=47.52 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=105.1
Q ss_pred eeEEeecCCCChHH------hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCccee
Q psy12966 124 DLYYLMDLSNSMRD------DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYH 197 (741)
Q Consensus 124 Dly~LmDlS~SM~d------dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~ 197 (741)
-||+++|.|.+|.+ -++++-+.+..++.+.=...+=-+|||.+-+|+..-
T Consensus 62 hl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~------------------------ 117 (378)
T KOG2807|consen 62 HLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKAD------------------------ 117 (378)
T ss_pred eEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhh------------------------
Confidence 58999999999975 356677777777766655556689999999986321
Q ss_pred eeecCCccHHHHHHhcccee-eccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCC
Q psy12966 198 NVMSLSQDTSRFSAQVKGAN-VSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPND 276 (741)
Q Consensus 198 ~~l~lT~d~~~F~~~v~~~~-isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnD 276 (741)
....||.|...-+.++++++ -+|+ =.-..+|+-.++.+ ..+-= ..+|-+||+++--..
T Consensus 118 ~lt~ltgnp~~hI~aL~~~~~~~g~-fSLqNaLe~a~~~L---k~~p~-H~sREVLii~sslsT---------------- 176 (378)
T KOG2807|consen 118 RLTDLTGNPRIHIHALKGLTECSGD-FSLQNALELAREVL---KHMPG-HVSREVLIIFSSLST---------------- 176 (378)
T ss_pred HHHHhcCCHHHHHHHHhcccccCCC-hHHHHHHHHHHHHh---cCCCc-ccceEEEEEEeeecc----------------
Confidence 12358899999999999988 4444 22233444444444 33311 245666666532221
Q ss_pred CcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecchhhhHHHHhhcccCceeeec
Q psy12966 277 GLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTL 339 (741)
Q Consensus 277 g~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~~~~~Y~~l~~~i~gs~vg~L 339 (741)
-|=-.|-+..++|...+|..-|..-...+-+|++|++.-.|...-.|
T Consensus 177 ----------------~DPgdi~~tI~~lk~~kIRvsvIgLsaEv~icK~l~kaT~G~Y~V~l 223 (378)
T KOG2807|consen 177 ----------------CDPGDIYETIDKLKAYKIRVSVIGLSAEVFICKELCKATGGRYSVAL 223 (378)
T ss_pred ----------------cCcccHHHHHHHHHhhCeEEEEEeechhHHHHHHHHHhhCCeEEEEe
Confidence 12124778999999999999988888888899999998887543333
No 74
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=92.76 E-value=1.6 Score=44.69 Aligned_cols=161 Identities=15% Similarity=0.212 Sum_probs=105.4
Q ss_pred eecCCCChHH------hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeec
Q psy12966 128 LMDLSNSMRD------DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMS 201 (741)
Q Consensus 128 LmDlS~SM~d------dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~ 201 (741)
++|+|.+|.+ -+.-+.+.+..++++.=..-+=-++|+.+.+|+.. ....+
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a------------------------~~ls~ 56 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRA------------------------ERLSE 56 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeeccee------------------------EEeee
Confidence 5899999975 24556666677777766666678999999999732 23467
Q ss_pred CCccHHHHHHhcccee---eccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCc
Q psy12966 202 LSQDTSRFSAQVKGAN---VSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGL 278 (741)
Q Consensus 202 lT~d~~~F~~~v~~~~---isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~ 278 (741)
|+.|..+..+++++.. -+|. =.-..+|+..+++.. .+- ...+|.+||+++ ..+.
T Consensus 57 lsgn~~~h~~~L~~~~~~~~~G~-~SLqN~Le~A~~~L~---~~p-~~~srEIlvi~g--Sl~t---------------- 113 (193)
T PF04056_consen 57 LSGNPQEHIEALKKLRKLEPSGE-PSLQNGLEMARSSLK---HMP-SHGSREILVIFG--SLTT---------------- 113 (193)
T ss_pred cCCCHHHHHHHHHHhccCCCCCC-hhHHHHHHHHHHHHh---hCc-cccceEEEEEEe--eccc----------------
Confidence 9999999999887764 2221 112235665555552 222 235677777662 1111
Q ss_pred ccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecchhhhHHHHhhcccCceeeeccCCcchHHHHHH
Q psy12966 279 CHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVK 351 (741)
Q Consensus 279 Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~~~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI~ 351 (741)
-|=-++-+..+.|++++|..=+..-...+..+++|++.-+|...-.|. ....-+++.
T Consensus 114 --------------~Dp~di~~ti~~l~~~~IrvsvI~laaEv~I~k~i~~~T~G~y~V~ld--e~H~~~lL~ 170 (193)
T PF04056_consen 114 --------------CDPGDIHETIESLKKENIRVSVISLAAEVYICKKICKETGGTYGVILD--EDHFKELLM 170 (193)
T ss_pred --------------CCchhHHHHHHHHHHcCCEEEEEEEhHHHHHHHHHHHhhCCEEEEecC--HHHHHHHHH
Confidence 111147789999999999987777777777999999999875444443 444555443
No 75
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=92.70 E-value=0.06 Score=31.60 Aligned_cols=13 Identities=31% Similarity=0.958 Sum_probs=10.9
Q ss_pred eeeeCCCccCCcc
Q psy12966 471 LCECDQSHFGRRC 483 (741)
Q Consensus 471 ~C~C~~G~~G~~C 483 (741)
+|.|.+||.|++|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 5999999999987
No 76
>smart00051 DSL delta serrate ligand.
Probab=92.22 E-value=0.11 Score=43.67 Aligned_cols=43 Identities=19% Similarity=0.412 Sum_probs=29.3
Q ss_pred eeeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceec-CCCCccCCCCCceecCc
Q psy12966 472 CECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCL-CNQKSLDNIVNVIISHV 532 (741)
Q Consensus 472 C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~-cG~C~C~~~~~~~~G~~ 532 (741)
=.|+++|+|..|+ ..|...+ .+.+|..|. -|.|+|.. +|+|.+
T Consensus 19 v~C~~~~yG~~C~-----------~~C~~~~----d~~~~~~Cd~~G~~~C~~---Gw~G~~ 62 (63)
T smart00051 19 VTCDENYYGEGCN-----------KFCRPRD----DFFGHYTCDENGNKGCLE---GWMGPY 62 (63)
T ss_pred eeCCCCCcCCccC-----------CEeCcCc----cccCCccCCcCCCEecCC---CCcCCC
Confidence 3688999999996 2455322 255666665 67888853 688887
No 77
>KOG3637|consensus
Probab=91.53 E-value=0.11 Score=65.15 Aligned_cols=36 Identities=31% Similarity=0.526 Sum_probs=30.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy12966 683 HVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRR 718 (741)
Q Consensus 683 ~~~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~Drr 718 (741)
+.++|+||++++||+||++||++++||+=..=+-|+
T Consensus 975 ~vp~wiIi~svl~GLLlL~llv~~LwK~GFFKR~r~ 1010 (1030)
T KOG3637|consen 975 PVPLWIIILSVLGGLLLLALLVLLLWKCGFFKRNRK 1010 (1030)
T ss_pred ccceeeehHHHHHHHHHHHHHHHHHHhcCccccCCC
Confidence 378999999999999999999999999877644443
No 78
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=91.38 E-value=0.59 Score=48.93 Aligned_cols=185 Identities=16% Similarity=0.299 Sum_probs=92.0
Q ss_pred cceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhc--CceeEEeeEeecccccCccccCc----------ccccCCCCC
Q psy12966 122 PVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVT--SNFRLGFGSFVDKVVMPYVSMVP----------KNLLEPCAG 189 (741)
Q Consensus 122 pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t--~~~r~GfgsFvDk~~~P~~~~~p----------~~l~~Pc~~ 189 (741)
|.=.+||+|+|.. .-+-..++.+...|.+.|..+. ++.|+||-+|-++ +.=| +..+ .++.+|=
T Consensus 3 pp~y~FvID~s~~-av~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~-V~~y-~l~~~~~~~~~~v~~dl~~~~-- 77 (243)
T PF04811_consen 3 PPVYVFVIDVSYE-AVQSGLLQSLIESLKSALDSLPGDERTRVGIITFDSS-VHFY-NLSSSLSQPQMIVVSDLDDPF-- 77 (243)
T ss_dssp --EEEEEEE-SHH-HHHHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSS-EEEE-ETTTTSSSTEEEEEHHTTSHH--
T ss_pred CCEEEEEEECchh-hhhccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCE-EEEE-ECCCCcCCCcccchHHHhhcc--
Confidence 5668999999954 1122334445556666667777 8999999999544 4322 2221 1122211
Q ss_pred CCCCcceeeeecCCccHHHHHHhcccee-eccC--CCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCC
Q psy12966 190 CAAPYGYHNVMSLSQDTSRFSAQVKGAN-VSGN--LDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDG 266 (741)
Q Consensus 190 c~~~f~f~~~l~lT~d~~~F~~~v~~~~-isgn--~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg 266 (741)
.|..-.-.+++.+..+.+.+.++.+. ...+ .-.|+..+-+.+++|. .-+.=+...-||++|.+-.+-.-.|
T Consensus 78 --~p~~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~--~ll~~~~~gGkI~~F~s~~pt~G~G-- 151 (243)
T PF04811_consen 78 --IPLPDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAAL--SLLSSRNTGGKILVFTSGPPTYGPG-- 151 (243)
T ss_dssp --SSTSSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHH--HHHHHHTS-EEEEEEESS---SSST--
T ss_pred --cCCcccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHH--HHHhccccCCEEEEEeccCCCCCCC--
Confidence 01111224667776666666666543 2222 2556666666666654 3334112446899998766644332
Q ss_pred CccceecCCCCcccccCCC---CccccccCCCCCHHHHHHHHHhcCccE-EEEEecchhhh
Q psy12966 267 KLGGIVKPNDGLCHMDRNG---MYTHSTVQDYPSISQINMKVKQNSINL-IFAVTAEQIGV 323 (741)
Q Consensus 267 ~L~Gi~~pnDg~Chl~~~~---~Y~~s~~~DYPSv~ql~~~l~e~~I~~-Ifavt~~~~~~ 323 (741)
|++.+.+..-|.+.+. .|..... + -..+|...+.+++|-+ ||+.+....++
T Consensus 152 ---g~l~~~~~~~~~~~~~~~~~~~~~~~-~--fY~~la~~~~~~~isvDlf~~~~~~~~l 206 (243)
T PF04811_consen 152 ---GSLKKREDSSHYDTEKEKALLLPPAN-E--FYKKLAEECSKQGISVDLFVFSSDYVDL 206 (243)
T ss_dssp ---TSS-SBTTSCCCCHCTTHHCHSHSSS-H--HHHHHHHHHHHCTEEEEEEEECSS--SH
T ss_pred ---ceecccccccccccccchhhhccccc-h--HHHHHHHHHHhcCCEEEEEeecCCCCCc
Confidence 5566655554443211 1222211 1 2578999999999965 56666654443
No 79
>PRK10997 yieM hypothetical protein; Provisional
Probab=90.17 E-value=1.3 Score=51.36 Aligned_cols=108 Identities=19% Similarity=0.120 Sum_probs=60.0
Q ss_pred cCCCcceeEEeecCCCChHHhH-HHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcce
Q psy12966 118 AEDYPVDLYYLMDLSNSMRDDK-DRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGY 196 (741)
Q Consensus 118 ~~~~pvDly~LmDlS~SM~ddl-~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f 196 (741)
++..+..+++++|.|+||.+.. ...|.++-.|+.. .+..+=++|+-.|.|.... |
T Consensus 319 ~~~~kGpiII~VDtSGSM~G~ke~~AkalAaAL~~i--Al~q~dr~~li~Fs~~i~~-~--------------------- 374 (487)
T PRK10997 319 DEQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRI--ALAENRRCYIMLFSTEVVT-Y--------------------- 374 (487)
T ss_pred cCCCCCcEEEEEECCCCCCCCHHHHHHHHHHHHHHH--HHhcCCCEEEEEecCCcee-e---------------------
Confidence 3455689999999999998443 2234444444322 3345677888888886431 1
Q ss_pred eeeecCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCC
Q psy12966 197 HNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAE 259 (741)
Q Consensus 197 ~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~ 259 (741)
.++=......+.+.+... ..|+-| -+..+..++..+ ..-.|| +-+||++||--
T Consensus 375 --~l~~~~gl~~ll~fL~~~-f~GGTD-l~~aL~~al~~l---~~~~~r---~adIVVISDF~ 427 (487)
T PRK10997 375 --ELTGPDGLEQAIRFLSQS-FRGGTD-LAPCLRAIIEKM---QGREWF---DADAVVISDFI 427 (487)
T ss_pred --ccCCccCHHHHHHHHHHh-cCCCCc-HHHHHHHHHHHH---cccccC---CceEEEECCCC
Confidence 011112344445555432 344433 333444444444 355577 44788898864
No 80
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=89.69 E-value=0.46 Score=45.20 Aligned_cols=25 Identities=24% Similarity=0.580 Sum_probs=17.9
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHH
Q psy12966 682 PHVYILGLVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 682 ~~~~~~~Ivlgvi~~ivliGl~lLliw 708 (741)
..+.+.+|++||++|||++ ||||+|
T Consensus 62 s~~~i~~Ii~gv~aGvIg~--Illi~y 86 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVIGI--ILLISY 86 (122)
T ss_dssp S-TCHHHHHHHHHHHHHHH--HHHHHH
T ss_pred cccceeehhHHHHHHHHHH--HHHHHH
Confidence 4567999999999999654 444444
No 81
>smart00051 DSL delta serrate ligand.
Probab=88.89 E-value=0.28 Score=41.33 Aligned_cols=34 Identities=9% Similarity=-0.102 Sum_probs=26.8
Q ss_pred ceecCcccccee-ecCCC--CCceeee-cCceEecCCceec
Q psy12966 527 VIISHVIVTTEC-CVLDL--NTVGACV-ASAIVKTAGLVQR 563 (741)
Q Consensus 527 ~~~G~~~~~Cec-C~~~~--gG~G~C~-cg~C~C~~G~~G~ 563 (741)
.|+|.. |+. |...+ .+|.+|+ -|.|+|.+||+|+
T Consensus 24 ~~yG~~---C~~~C~~~~d~~~~~~Cd~~G~~~C~~Gw~G~ 61 (63)
T smart00051 24 NYYGEG---CNKFCRPRDDFFGHYTCDENGNKGCLEGWMGP 61 (63)
T ss_pred CCcCCc---cCCEeCcCccccCCccCCcCCCEecCCCCcCC
Confidence 588999 988 74322 3888997 6899999999984
No 82
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=88.82 E-value=1.8 Score=50.10 Aligned_cols=119 Identities=17% Similarity=0.222 Sum_probs=65.9
Q ss_pred cCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeE-EeeEeecccccCccccCcccccCCCCCCCCCcce
Q psy12966 118 AEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRL-GFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGY 196 (741)
Q Consensus 118 ~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~-GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f 196 (741)
+...-+=+-+|+|+|.||.+-+++-|....-+.++|+.+..-.++ ||- -| +..|++-. .||.+
T Consensus 442 p~~~Dla~TLLvD~S~St~a~mdetrRvidl~~eaL~~la~~~qa~gd~--~~--~~~fts~r------------r~~vr 505 (637)
T COG4548 442 PSAHDLAFTLLVDVSASTDAKMDETRRVIDLFHEALLVLAHGHQALGDS--ED--ILDFTSRR------------RPWVR 505 (637)
T ss_pred cccccceeEEEeecccchHHHhhhhhhhHHHHHHHHHHhhchhhhhCCH--HH--hcCchhhc------------Cccee
Confidence 444334445689999999999999888888888888877543332 331 11 11222211 11222
Q ss_pred eee-ecCCccHHHHHHhccc--eeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCC
Q psy12966 197 HNV-MSLSQDTSRFSAQVKG--ANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEF 260 (741)
Q Consensus 197 ~~~-l~lT~d~~~F~~~v~~--~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~ 260 (741)
.+. .+|... +...+.. +-..-+.|+--| -||-+|. ..+.=|++++|+||+.||.-+
T Consensus 506 i~tvk~FDes---~~~~~~~RImALePg~ytR~G--~AIR~As---~kL~~rpq~qklLivlSDGkP 564 (637)
T COG4548 506 INTVKDFDES---MGETVGPRIMALEPGYYTRDG--AAIRHAS---AKLMERPQRQKLLIVLSDGKP 564 (637)
T ss_pred eeeeeccccc---cccccchhheecCcccccccc--HHHHHHH---HHHhcCcccceEEEEecCCCc
Confidence 111 111111 1111111 012222233323 2677777 688999999999999999753
No 83
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=87.72 E-value=0.93 Score=48.77 Aligned_cols=41 Identities=24% Similarity=0.523 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy12966 686 ILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKER 727 (741)
Q Consensus 686 ~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~kFekE~ 727 (741)
+|.||+|+++|++++||+.+++..+. -+.-|++-++.|++.
T Consensus 212 ~W~iv~g~~~G~~~L~ll~~lv~~~v-r~krk~k~~eMEr~A 252 (278)
T PF06697_consen 212 WWKIVVGVVGGVVLLGLLSLLVAMLV-RYKRKKKIEEMERRA 252 (278)
T ss_pred eEEEEEEehHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHhh
Confidence 67789999999999999876655333 222244444444443
No 84
>KOG1214|consensus
Probab=85.88 E-value=2.2 Score=51.56 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=34.0
Q ss_pred ceEecCCcee----ccccccCCCCccccCccccCCcccccc----ccccccccccccCCCCCccc-CCC
Q psy12966 553 AIVKTAGLVQ----RVTVAPLMTPVYLLREERCARARESVS----AVCANVLKIAREDIPAGSAR-NAR 612 (741)
Q Consensus 553 ~C~C~~G~~G----~~~~~~C~~~~~~~~~~~Csg~G~C~c----G~C~~~~~C~~~~~~gy~G~-e~C 612 (741)
.|.|-+||+| -+..+.|.. ..|...-.|.. -.|+ | .+||+|+ ..|
T Consensus 810 ~C~CLPGfsGDG~~c~dvDeC~p-------srChp~A~CyntpgsfsC~----C----~pGy~GDGf~C 863 (1289)
T KOG1214|consen 810 SCACLPGFSGDGHQCTDVDECSP-------SRCHPAATCYNTPGSFSCR----C----QPGYYGDGFQC 863 (1289)
T ss_pred EEeecCCccCCccccccccccCc-------cccCCCceEecCCCcceee----c----ccCccCCCcee
Confidence 7999999999 344566732 35777777763 4789 9 8999999 677
No 85
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=85.41 E-value=5.7 Score=40.76 Aligned_cols=45 Identities=18% Similarity=0.123 Sum_probs=24.7
Q ss_pred eEEeecCCCChH-------HhHHHHHHHHHHHHHHHHhhcCceeEEeeEeec
Q psy12966 125 LYYLMDLSNSMR-------DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVD 169 (741)
Q Consensus 125 ly~LmDlS~SM~-------ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvD 169 (741)
+.||+|+|.||. .+++...+.+..+++..--....=.+|+..|.=
T Consensus 2 ~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt 53 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGT 53 (224)
T ss_dssp EEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-
T ss_pred EEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcC
Confidence 689999999998 345555555554443332223345588876653
No 86
>KOG1984|consensus
Probab=84.02 E-value=21 Score=43.97 Aligned_cols=203 Identities=17% Similarity=0.250 Sum_probs=109.0
Q ss_pred eeEEEEEeeCcc---EEEEEE--E--eccCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHh---hcCceeEEeeE
Q psy12966 97 QHVSLKLRINEA---YRMVVD--Y--AQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQE---VTSNFRLGFGS 166 (741)
Q Consensus 97 q~v~~~LR~G~~---~~~~~~--~--~~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~---~t~~~r~Gfgs 166 (741)
+++.++=||-.. +.|-++ | +.-.-.|.=.+|++|+|+.--.+ .-+|.++..|-+.|.. ...+.|+||..
T Consensus 385 rr~D~~erpEL~~Gt~dfvatk~Y~~~~k~p~ppafvFmIDVSy~Ai~~-G~~~a~ce~ik~~l~~lp~~~p~~~Vgivt 463 (1007)
T KOG1984|consen 385 RRVDVEERPELCLGTVDFVATKDYCRKTKPPKPPAFVFMIDVSYNAISN-GAVKAACEAIKSVLEDLPREEPNIRVGIVT 463 (1007)
T ss_pred cccccccCchhcccccceeeehhhhhcCCCCCCceEEEEEEeehhhhhc-chHHHHHHHHHHHHhhcCccCCceEEEEEE
Confidence 455566565322 344443 2 22244568899999999753221 1133334444333433 56789999999
Q ss_pred eecccccCccccCcccccCCC----CCCCC---CcceeeeecCCccHHHHHHhcccee-eccCCCCCcchHHHHHHHHhc
Q psy12966 167 FVDKVVMPYVSMVPKNLLEPC----AGCAA---PYGYHNVMSLSQDTSRFSAQVKGAN-VSGNLDGPEGGFDAIMQAIVC 238 (741)
Q Consensus 167 FvDk~~~P~~~~~p~~l~~Pc----~~c~~---~f~f~~~l~lT~d~~~F~~~v~~~~-isgn~D~PE~~ldAl~qa~vC 238 (741)
|-++. =|.+..+ .|.+|= ..-+. ||.---.+....+.......|..+. +-..--.||.+|-+.+||++
T Consensus 464 fd~tv--hFfnl~s-~L~qp~mliVsdv~dvfvPf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~- 539 (1007)
T KOG1984|consen 464 FDKTV--HFFNLSS-NLAQPQMLIVSDVDDVFVPFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAK- 539 (1007)
T ss_pred eccee--EeeccCc-cccCceEEEeecccccccccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHH-
Confidence 98763 3444332 233333 01111 2211122444445555555555542 22333459999999999986
Q ss_pred cccccccCCccEEEEEecCCCCCcCC-------CCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCcc
Q psy12966 239 KEEIGWRDRARRLLVFSTDAEFHHAG-------DGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSIN 311 (741)
Q Consensus 239 ~~~igWR~~a~rliv~~TDa~~H~ag-------Dg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~ 311 (741)
..++--+ +-|++||.+=-+---+| |++|.|- +++-.....+|- +...|++.+.|.+|-
T Consensus 540 -lalk~~~-gGKl~vF~s~Lpt~g~g~kl~~r~D~~l~~t------------~kek~l~~pq~~-~y~~LA~e~v~~g~s 604 (1007)
T KOG1984|consen 540 -LALKAAD-GGKLFVFHSVLPTAGAGGKLSNRDDRRLIGT------------DKEKNLLQPQDK-TYTTLAKEFVESGCS 604 (1007)
T ss_pred -HHHhccC-CceEEEEecccccccCcccccccchhhhhcc------------cchhhccCcchh-HHHHHHHHHHHhCce
Confidence 4555543 78999988766544443 4444332 111111111111 346789999999998
Q ss_pred EEEEEecc
Q psy12966 312 LIFAVTAE 319 (741)
Q Consensus 312 ~Ifavt~~ 319 (741)
+=.-+|..
T Consensus 605 vDlF~t~~ 612 (1007)
T KOG1984|consen 605 VDLFLTPN 612 (1007)
T ss_pred EEEEEccc
Confidence 76666543
No 87
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=82.58 E-value=2.9 Score=34.95 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcc
Q psy12966 689 LVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKERMLAK 731 (741)
Q Consensus 689 Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~kFekE~~~ak 731 (741)
|++..++|+++.+|+.+.- .+.-|||.++.+||.++.+
T Consensus 24 il~~f~~G~llg~l~~~~~-----~~~~r~~~~~~~k~l~~le 61 (68)
T PF06305_consen 24 ILIAFLLGALLGWLLSLPS-----RLRLRRRIRRLRKELKKLE 61 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333 3888888888888887654
No 88
>KOG1836|consensus
Probab=78.09 E-value=3.7 Score=54.10 Aligned_cols=81 Identities=19% Similarity=0.318 Sum_probs=45.7
Q ss_pred ceeeeCCCccCCccc-ccCCCCCC-c-CcccCccCCCCccccCCC-ceec--CCCCccCCCCCceecCccccceeecCCC
Q psy12966 470 GLCECDQSHFGRRCE-CDAESSQG-I-TSTGCKADANSTMECSGR-GNCL--CNQKSLDNIVNVIISHVIVTTECCVLDL 543 (741)
Q Consensus 470 G~C~C~~G~~G~~Ce-C~~~~~~~-~-~~~~C~~~~~~~~~Csg~-G~C~--cG~C~C~~~~~~~~G~~~~~CecC~~~~ 543 (741)
..|.|..||.|+.|| |....... . ....|+.-+ -.|+|| ..|. .|+|.|.. .-.|.. |+-|....
T Consensus 695 e~c~C~~g~tG~~Ce~C~~gfrr~~~~~~~~~~c~~---C~cngh~~~Cd~~tG~C~C~~---~t~G~~---C~~C~~Gf 765 (1705)
T KOG1836|consen 695 EQCTCPVGYTGQFCESCAPGFRRLSPQLGPFCPCIP---CDCNGHSNICDPRTGQCKCKH---NTFGGQ---CAQCVDGF 765 (1705)
T ss_pred hhccCCCCcccchhhhcchhhhcccccCCCCCcccc---cccCCccccccCCCCceeccc---CCCCCc---hhhhcCCC
Confidence 459999999999998 65443221 1 212233211 346776 7785 78999932 234777 77665432
Q ss_pred C---Cceeee-cCceEecCC
Q psy12966 544 N---TVGACV-ASAIVKTAG 559 (741)
Q Consensus 544 g---G~G~C~-cg~C~C~~G 559 (741)
. -.|+=. |-.|.|..+
T Consensus 766 Yg~~~~~~~~dC~~C~Cp~~ 785 (1705)
T KOG1836|consen 766 YGLPDLGTSGDCQPCPCPNG 785 (1705)
T ss_pred CCccccCCCCCCccCCCCCC
Confidence 2 122222 455666544
No 89
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=75.75 E-value=18 Score=39.44 Aligned_cols=146 Identities=14% Similarity=0.183 Sum_probs=92.2
Q ss_pred eeEEeecCCCChHH------hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCccee
Q psy12966 124 DLYYLMDLSNSMRD------DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYH 197 (741)
Q Consensus 124 Dly~LmDlS~SM~d------dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~ 197 (741)
-|.+++|+|.+|.. -.+++-+.+..++-+.=...+=-+++|-+.+|--+ +
T Consensus 89 hl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~qNPiSqlsii~irdg~a------------------------~ 144 (421)
T COG5151 89 HLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQNPISQLSIISIRDGCA------------------------K 144 (421)
T ss_pred eeEEEEEhhhhhhhhhccchHHHHHHHHHHHHhHHHhccCCchheeeeehhhhHH------------------------H
Confidence 58899999999963 23455566666655544444446788877777421 1
Q ss_pred eeecCCccHHHHHHhcccee-eccCCCCCcchHHHHHHH--HhccccccccCCccEEEEEecCCCCCcCCCCCccceecC
Q psy12966 198 NVMSLSQDTSRFSAQVKGAN-VSGNLDGPEGGFDAIMQA--IVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKP 274 (741)
Q Consensus 198 ~~l~lT~d~~~F~~~v~~~~-isgn~D~PE~~ldAl~qa--~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~p 274 (741)
.+-++..|...|..+++..+ -+||.- ...||--| .+= .+- -.+.|-+||++.-...-..
T Consensus 145 ~~s~~~gnpq~hi~~lkS~rd~~gnfS----LqNaLEmar~~l~--~~~-~H~trEvLiifgS~st~DP----------- 206 (421)
T COG5151 145 YTSSMDGNPQAHIGQLKSKRDCSGNFS----LQNALEMARIELM--KNT-MHGTREVLIIFGSTSTRDP----------- 206 (421)
T ss_pred HhhhcCCCHHHHHHHhhcccccCCChh----HHhHHHHhhhhhc--ccc-cccceEEEEEEeecccCCC-----------
Confidence 23467789999999998876 667632 22232222 110 111 0133555555533221111
Q ss_pred CCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecchhhhHHHHhhccc
Q psy12966 275 NDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIE 332 (741)
Q Consensus 275 nDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~~~~~Y~~l~~~i~ 332 (741)
-.+.|...+|...+|.+-|..-...+.+|+++.+.-.
T Consensus 207 ---------------------gdi~~tid~Lv~~~IrV~~igL~aevaicKeickaTn 243 (421)
T COG5151 207 ---------------------GDIAETIDKLVAYNIRVHFIGLCAEVAICKEICKATN 243 (421)
T ss_pred ---------------------ccHHHHHHHHHhhceEEEEEeehhHHHHHHHHHhhcC
Confidence 1478999999999999999998888899999988763
No 90
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=75.72 E-value=1.3 Score=37.36 Aligned_cols=34 Identities=12% Similarity=-0.057 Sum_probs=21.5
Q ss_pred ceecCcccccee-ecCCC--CCceeee-cCceEecCCceec
Q psy12966 527 VIISHVIVTTEC-CVLDL--NTVGACV-ASAIVKTAGLVQR 563 (741)
Q Consensus 527 ~~~G~~~~~Cec-C~~~~--gG~G~C~-cg~C~C~~G~~G~ 563 (741)
.|+|+. |.. |...+ .+|-+|+ -|+=.|.+||+|+
T Consensus 24 nyyG~~---C~~~C~~~~d~~ghy~Cd~~G~~~C~~Gw~G~ 61 (63)
T PF01414_consen 24 NYYGPN---CSKFCKPRDDSFGHYTCDSNGNKVCLPGWTGP 61 (63)
T ss_dssp TEETTT---T-EE---EEETTEEEEE-SS--EEE-TTEEST
T ss_pred CCCCcc---ccCCcCCCcCCcCCcccCCCCCCCCCCCCcCC
Confidence 599999 998 85442 3788997 6899999999994
No 91
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=75.37 E-value=4.3 Score=41.78 Aligned_cols=37 Identities=32% Similarity=0.411 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q psy12966 693 VIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKERML 729 (741)
Q Consensus 693 vi~~ivliGl~lLliwK~~~~i~DrrE~~kFekE~~~ 729 (741)
+|.+++|+|+|+|=+=..+....|++|-++|++|.+.
T Consensus 138 ~Ii~~~LvGVLvLQaG~~YAe~~~~~~~~~~~~~e~~ 174 (196)
T PF08229_consen 138 TIIALVLVGVLVLQAGQWYAERKDAKELEEFEKEEAE 174 (196)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHH
Confidence 6888999999999999999999999999999988854
No 92
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=73.95 E-value=2.9 Score=30.26 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=19.0
Q ss_pred CCCCCeEEeCc-----eeeeCCCccCCc
Q psy12966 460 NCSGFGTFKCG-----LCECDQSHFGRR 482 (741)
Q Consensus 460 ~Csg~G~c~cG-----~C~C~~G~~G~~ 482 (741)
.|..+|+|+-. .|.|.+||.|++
T Consensus 5 ~C~n~g~C~~~~~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 5 PCQNGGTCIDLPGGGYTCECPPGYTGKR 32 (32)
T ss_dssp SSTTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred cCCCCeEEEeCCCCCEEeECCCCCccCC
Confidence 68899999642 699999999974
No 93
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=73.45 E-value=3.8 Score=32.55 Aligned_cols=19 Identities=47% Similarity=1.253 Sum_probs=15.9
Q ss_pred CceeeeCCCccCCccc-ccC
Q psy12966 469 CGLCECDQSHFGRRCE-CDA 487 (741)
Q Consensus 469 cG~C~C~~G~~G~~Ce-C~~ 487 (741)
-|+|.|.++|.|..|+ |..
T Consensus 18 ~G~C~C~~~~~G~~C~~C~~ 37 (50)
T cd00055 18 TGQCECKPNTTGRRCDRCAP 37 (50)
T ss_pred CCEEeCCCcCCCCCCCCCCC
Confidence 4789999999999997 543
No 94
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=71.68 E-value=1e+02 Score=36.91 Aligned_cols=44 Identities=18% Similarity=0.085 Sum_probs=25.7
Q ss_pred eEEeecCCCChHHh---------HHHHHHHHHHHHHHHHhhcCceeEEeeEee
Q psy12966 125 LYYLMDLSNSMRDD---------KDRLSALGDQLSASMQEVTSNFRLGFGSFV 168 (741)
Q Consensus 125 ly~LmDlS~SM~dd---------l~~lk~l~~~l~~~l~~~t~~~r~GfgsFv 168 (741)
|.||||+|.||..- +..+.+.+..|++..==..++=.+|+-.|-
T Consensus 13 ilflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfg 65 (584)
T TIGR00578 13 LIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYG 65 (584)
T ss_pred EEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 78999999999951 233333344444321111345677887663
No 95
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=71.48 E-value=2.6 Score=34.59 Aligned_cols=28 Identities=36% Similarity=0.761 Sum_probs=16.3
Q ss_pred CCCCCCCeEEe-C-----c--eeeeCCCccCCcccc
Q psy12966 458 SPNCSGFGTFK-C-----G--LCECDQSHFGRRCEC 485 (741)
Q Consensus 458 s~~Csg~G~c~-c-----G--~C~C~~G~~G~~CeC 485 (741)
+..|||||..- - | .|.|+.-|.|++|+-
T Consensus 16 ai~CSGHGr~flDg~~~dG~p~CECn~Cy~GpdCS~ 51 (56)
T PF04863_consen 16 AISCSGHGRAFLDGLIADGSPVCECNSCYGGPDCST 51 (56)
T ss_dssp TS--TTSEE--TTS-EETTEE--EE-TTEESTTS-E
T ss_pred cCCcCCCCeeeeccccccCCccccccCCcCCCCccc
Confidence 34699999874 3 3 699999999999974
No 96
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=70.17 E-value=26 Score=36.40 Aligned_cols=170 Identities=17% Similarity=0.219 Sum_probs=91.8
Q ss_pred cceeEEeecCCCChHHhHHHHHHHH-------HHHHHHHHhh-cCceeEEeeEeec----ccccCccccCcccccCCCCC
Q psy12966 122 PVDLYYLMDLSNSMRDDKDRLSALG-------DQLSASMQEV-TSNFRLGFGSFVD----KVVMPYVSMVPKNLLEPCAG 189 (741)
Q Consensus 122 pvDly~LmDlS~SM~ddl~~lk~l~-------~~l~~~l~~~-t~~~r~GfgsFvD----k~~~P~~~~~p~~l~~Pc~~ 189 (741)
-+.|++.||+|+||..+=-.|+.-| ..+++.|..- ...+.+-+--|.+ ..++||
T Consensus 3 dlaLvLavDvS~SVD~~E~~lQ~~G~A~Al~dp~V~~Ai~~g~~g~Iav~~~eWsg~~~q~~~v~W-------------- 68 (205)
T PF06707_consen 3 DLALVLAVDVSGSVDADEYRLQREGYAAALRDPEVIAAILSGPIGRIAVAVVEWSGPGRQRVVVPW-------------- 68 (205)
T ss_pred cceeeeeeeccCCCCHHHHHHHHHHHHHHHCCHHHHHHHhcCCCCeEEEEEEEecCCCCceEEeCC--------------
Confidence 3789999999999998888887755 2333333331 1234444444443 223332
Q ss_pred CCCCcceeeeecCCccHHHHHHhcccee-eccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCc
Q psy12966 190 CAAPYGYHNVMSLSQDTSRFSAQVKGAN-VSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKL 268 (741)
Q Consensus 190 c~~~f~f~~~l~lT~d~~~F~~~v~~~~-isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L 268 (741)
..+.=..|...|...+.... ..++... -=.||..++-=-.+.+++ ..||+|=+++|.+-
T Consensus 69 --------t~i~~~~da~a~A~~l~~~~r~~~~~Ta---ig~Al~~a~~ll~~~~~~-~~RrVIDvSGDG~~-------- 128 (205)
T PF06707_consen 69 --------TRIDSPADAEAFAARLRAAPRRFGGRTA---IGSALDFAAALLAQNPFE-CWRRVIDVSGDGPN-------- 128 (205)
T ss_pred --------EEeCCHHHHHHHHHHHHhCCCCCCCCch---HHHHHHHHHHHHHhCCCC-CceEEEEECCCCCC--------
Confidence 23444568889999998874 3333322 233444443111233332 44778777776651
Q ss_pred cceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEE-EEEec-------chhhhHHHHhhcc--cCceeee
Q psy12966 269 GGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLI-FAVTA-------EQIGVYERLKTHI--EGSSSGT 338 (741)
Q Consensus 269 ~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~I-favt~-------~~~~~Y~~l~~~i--~gs~vg~ 338 (741)
|+ -.+-+...+..+...+|.+= +++.. ....+|+ ...| ||++| +
T Consensus 129 ------N~-----------------G~~p~~~ard~~~~~GitINgL~I~~~~~~~~~~L~~yy~--~~VIgGpgAFV-~ 182 (205)
T PF06707_consen 129 ------NQ-----------------GPRPVTSARDAAVAAGITINGLAILDDDPFGGADLDAYYR--RCVIGGPGAFV-E 182 (205)
T ss_pred ------CC-----------------CCCccHHHHHHHHHCCeEEeeeEecCCCCCccccHHHHHh--hhcccCCCceE-E
Confidence 11 11223467777777887543 33322 2344564 3344 45666 3
Q ss_pred ccCCcchHHHHHH
Q psy12966 339 LTNDSSNVVDLVK 351 (741)
Q Consensus 339 L~~dSsNiv~lI~ 351 (741)
.+.+-....+.|+
T Consensus 183 ~a~~~~df~~Air 195 (205)
T PF06707_consen 183 TARGFEDFAEAIR 195 (205)
T ss_pred EcCCHHHHHHHHH
Confidence 4566666665555
No 97
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=68.94 E-value=7.9 Score=39.74 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy12966 693 VIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKERM 728 (741)
Q Consensus 693 vi~~ivliGl~lLliwK~~~~i~DrrE~~kFekE~~ 728 (741)
+|.+++|+|+|+|=+=..+....|++|.++|.+|.+
T Consensus 138 ~Il~~vLvGVL~LQaG~wYAer~~~~~~~~~~~~~~ 173 (196)
T smart00786 138 TILLFVLVGVLVLQAGLWYAERKDAKQKEEFAAEER 173 (196)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH
Confidence 688899999999999999999999999999976543
No 98
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=68.68 E-value=8.9 Score=43.87 Aligned_cols=45 Identities=24% Similarity=0.177 Sum_probs=34.5
Q ss_pred ceeEEeecCCCChHHhH-HHHHHHHHHHHHHHHhhcCceeEEeeEe
Q psy12966 123 VDLYYLMDLSNSMRDDK-DRLSALGDQLSASMQEVTSNFRLGFGSF 167 (741)
Q Consensus 123 vDly~LmDlS~SM~ddl-~~lk~l~~~l~~~l~~~t~~~r~GfgsF 167 (741)
.=+++|||+||||.... .-+|...--|..-|+.--.++.+=|...
T Consensus 247 AVv~~lmDvSGSM~~~~K~lak~ff~~l~~fL~~~Y~~Ve~vfI~H 292 (421)
T PF04285_consen 247 AVVFCLMDVSGSMGEFKKDLAKRFFFWLYLFLRRKYENVEIVFIRH 292 (421)
T ss_pred EEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEee
Confidence 66899999999999985 4456666677777777777888877543
No 99
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=68.62 E-value=1.5 Score=37.02 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=21.3
Q ss_pred eeeeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceec-CCCCccCCCCCceecCc
Q psy12966 471 LCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCL-CNQKSLDNIVNVIISHV 532 (741)
Q Consensus 471 ~C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~-cG~C~C~~~~~~~~G~~ 532 (741)
.-.|++.|+|+.|.- -|.+.++ -.+|-+|. .|+-+|.. +|+|++
T Consensus 18 rv~C~~nyyG~~C~~-----------~C~~~~d----~~ghy~Cd~~G~~~C~~---Gw~G~~ 62 (63)
T PF01414_consen 18 RVVCDENYYGPNCSK-----------FCKPRDD----SFGHYTCDSNGNKVCLP---GWTGPN 62 (63)
T ss_dssp -----TTEETTTT-E-----------E---EEE----TTEEEEE-SS--EEE-T---TEESTT
T ss_pred EEECCCCCCCccccC-----------CcCCCcC----CcCCcccCCCCCCCCCC---CCcCCC
Confidence 457899999999972 3543221 23455554 57788843 799998
No 100
>KOG2353|consensus
Probab=67.78 E-value=17 Score=46.28 Aligned_cols=123 Identities=15% Similarity=0.283 Sum_probs=72.8
Q ss_pred eccCCCcceeEEeecCCCChHHhHHH-HHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCc
Q psy12966 116 AQAEDYPVDLYYLMDLSNSMRDDKDR-LSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPY 194 (741)
Q Consensus 116 ~~~~~~pvDly~LmDlS~SM~ddl~~-lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f 194 (741)
-+++..|-|++||+|.|+||..-.-. .|..+..|++.|... +| +=.-+|.-. +.| -.|| +
T Consensus 219 i~aAt~pKdiviLlD~SgSm~g~~~~lak~tv~~iLdtLs~~--Df-vni~tf~~~-~~~---------v~pc------~ 279 (1104)
T KOG2353|consen 219 IQAATSPKDIVILLDVSGSMSGLRLDLAKQTVNEILDTLSDN--DF-VNILTFNSE-VNP---------VSPC------F 279 (1104)
T ss_pred ccccCCccceEEEEeccccccchhhHHHHHHHHHHHHhcccC--Ce-EEEEeeccc-cCc---------cccc------c
Confidence 46788899999999999999986544 466777777777543 22 222233322 111 2344 1
Q ss_pred ceeeee-cCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccC----CccEEEEEecCCCC
Q psy12966 195 GYHNVM-SLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRD----RARRLLVFSTDAEF 260 (741)
Q Consensus 195 ~f~~~l-~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~----~a~rliv~~TDa~~ 260 (741)
+.+.+ .=..+...|+++++.+..-|....-. +|+...+... ..+.|=.. .-.++|+++||...
T Consensus 280 -~~~lvqAt~~nk~~~~~~i~~l~~k~~a~~~~-~~e~aF~lL~-~~n~s~~~~~~~~C~~~iml~tdG~~ 347 (1104)
T KOG2353|consen 280 -NGTLVQATMRNKKVFKEAIETLDAKGIANYTA-ALEYAFSLLR-DYNDSRANTQRSPCNQAIMLITDGVD 347 (1104)
T ss_pred -cCceeecchHHHHHHHHHHhhhccccccchhh-hHHHHHHHHH-HhccccccccccccceeeEEeecCCc
Confidence 22333 34458999999999888666654433 3433333332 23333221 14578888888764
No 101
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=64.38 E-value=21 Score=34.66 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=32.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHhcccCCCCCCCC
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLCLWKILT------SIHDRREFAKFEKERMLAKWDTKLNSLI 740 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLliwK~~~------~i~DrrE~~kFekE~~~akw~~~~NPly 740 (741)
....|+.|++++| .|++++.++.|+.+ ++- +||+.-+.||+++. ..|||.
T Consensus 73 ewk~v~~~~~~~i-~~s~~~~~~~r~~~~~~~P~T~t--~Ewqea~~er~~~~---~~NPit 128 (136)
T cd00922 73 EWKTVFGGVLAFI-GITGVIFGLQRAFVYGPKPHTFT--EEWQEAQLERMLDM---KVNPIT 128 (136)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHhccCCCCCCcC--HHHHHHHHHHHHHh---CCCCCc
Confidence 4555555655554 55555555566655 122 49999999999876 569985
No 102
>KOG1217|consensus
Probab=64.34 E-value=16 Score=40.73 Aligned_cols=108 Identities=21% Similarity=0.372 Sum_probs=64.6
Q ss_pred eeeeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceecC----CCCccCCCCCceecCcccccee------e-
Q psy12966 471 LCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLC----NQKSLDNIVNVIISHVIVTTEC------C- 539 (741)
Q Consensus 471 ~C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~c----G~C~C~~~~~~~~G~~~~~Cec------C- 539 (741)
.|.|..||.|..|+... ..|.... ..|.+.+.|.. -.|.|.. +|.|.. |+. |
T Consensus 153 ~c~C~~g~~~~~~~~~~--------~~C~~~~---~~c~~~~~C~~~~~~~~C~c~~---~~~~~~---~~~~~~~~~c~ 215 (487)
T KOG1217|consen 153 RCSCTEGYEGEPCETDL--------DECIQYS---SPCQNGGTCVNTGGSYLCSCPP---GYTGST---CETTGNGGTCV 215 (487)
T ss_pred eeeeCCCcccccccccc--------cccccCC---CCcCCCcccccCCCCeeEeCCC---CccCCc---CcCCCCCceEe
Confidence 58999999999998531 2354222 23666666652 2377743 456665 441 1
Q ss_pred -------cCCC-C-----C-------ceeeec----CceEecCCceecc-----ccccCCCCccccCccccCCcccccc-
Q psy12966 540 -------VLDL-N-----T-------VGACVA----SAIVKTAGLVQRV-----TVAPLMTPVYLLREERCARARESVS- 589 (741)
Q Consensus 540 -------~~~~-g-----G-------~G~C~c----g~C~C~~G~~G~~-----~~~~C~~~~~~~~~~~Csg~G~C~c- 589 (741)
+... + . .|+|.- ..|.|.+||++.. ....|.... . |...|+|.-
T Consensus 216 ~~~~~~~~~g~~~~~c~~~~~~~~~~~~~c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~-----~-c~~~~~C~~~ 289 (487)
T KOG1217|consen 216 DSVACSCPPGARGPECEVSIVECASGDGTCVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIA-----S-CPNGGTCVNV 289 (487)
T ss_pred cceeccCCCCCCCCCcccccccccCCCCcccccCCceeeeCCCCccccccceeeeccccCCCC-----c-cCCCCeeecC
Confidence 1000 0 0 056642 2799999999943 455664321 2 777888874
Q ss_pred ---ccccccccccccCCCCCccc
Q psy12966 590 ---AVCANVLKIAREDIPAGSAR 609 (741)
Q Consensus 590 ---G~C~~~~~C~~~~~~gy~G~ 609 (741)
-.|. | .+||.|.
T Consensus 290 ~~~~~C~----C----~~g~~g~ 304 (487)
T KOG1217|consen 290 PGSYRCT----C----PPGFTGR 304 (487)
T ss_pred CCcceee----C----CCCCCCC
Confidence 4688 8 8899987
No 103
>PTZ00395 Sec24-related protein; Provisional
Probab=62.57 E-value=1.9e+02 Score=37.98 Aligned_cols=189 Identities=11% Similarity=0.192 Sum_probs=98.5
Q ss_pred EEEEEeccCC-CcceeEEeecCCCC-hHHhHHHHHHHHHHHHHHHHhh-cCceeEEeeEeecccccCccccCcc------
Q psy12966 111 MVVDYAQAED-YPVDLYYLMDLSNS-MRDDKDRLSALGDQLSASMQEV-TSNFRLGFGSFVDKVVMPYVSMVPK------ 181 (741)
Q Consensus 111 ~~~~~~~~~~-~pvDly~LmDlS~S-M~ddl~~lk~l~~~l~~~l~~~-t~~~r~GfgsFvDk~~~P~~~~~p~------ 181 (741)
|-.++.+.++ -|.=..||+|+|.. ++. .-+...+..|.+.|..+ ....||||-+|-.. + =|.+..+.
T Consensus 940 ~~~~~~~~~~p~PP~YvFLIDVS~~AVkS--GLl~tacesIK~sLDsL~dpRTRVGIITFDSs-L-HFYNLks~l~~~~~ 1015 (1560)
T PTZ00395 940 FLAKYPQVKNMLPPYFVFVVECSYNAIYN--NITYTILEGIRYAVQNVKCPQTKIAIITFNSS-I-YFYHCKGGKGVSGE 1015 (1560)
T ss_pred hhhccccccCCCCCEEEEEEECCHHHHhh--ChHHHHHHHHHHHHhcCCCCCcEEEEEEecCc-E-EEEecCcccccccc
Confidence 3334444432 36789999999964 111 11344555555555554 35789999988664 2 24443332
Q ss_pred ------cccCCC----CCCCCCc---cee-eeecCCccHHHHHHhcccee-eccCCCCCcchHHHHHHHHhccccccccC
Q psy12966 182 ------NLLEPC----AGCAAPY---GYH-NVMSLSQDTSRFSAQVKGAN-VSGNLDGPEGGFDAIMQAIVCKEEIGWRD 246 (741)
Q Consensus 182 ------~l~~Pc----~~c~~~f---~f~-~~l~lT~d~~~F~~~v~~~~-isgn~D~PE~~ldAl~qa~vC~~~igWR~ 246 (741)
.+.+|= ..-+.|| .+. -.+++.+..+.+...|+.+. +..+.=.+|..|-+.+|||. .-|.=+.
T Consensus 1016 ~~~~~~~l~qPQMLVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~--~aLk~~G 1093 (1560)
T PTZ00395 1016 EGDGGGGSGNHQVIVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAM--DMLKERN 1093 (1560)
T ss_pred cccccccCCCceEEeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHH--HHHHhcC
Confidence 133333 1111222 111 23455566666666666653 22222346666666666664 3444333
Q ss_pred CccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEE-EEEe
Q psy12966 247 RARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLI-FAVT 317 (741)
Q Consensus 247 ~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~I-favt 317 (741)
+.-||++|.+=.|- .|.|+|--. + .+ +.+...... +-.-..+|+..+.+++|-+= |+..
T Consensus 1094 GGGKIiVF~SSLPn--iGpGaLK~R-e-~~----~KEk~Ll~p----qd~FYK~LA~ECsk~qISVDLFLfS 1153 (1560)
T PTZ00395 1094 GLGSICMFYTTTPN--CGIGAIKEL-K-KD----LQENFLEVK----QKIFYDSLLLDLYAFNISVDIFIIS 1153 (1560)
T ss_pred CCceEEEEEcCCCC--CCCCccccc-c-cc----ccccccccc----chHHHHHHHHHHHhcCCceEEEEcc
Confidence 34689999886663 477887411 1 11 111111111 11124679999999999884 4443
No 104
>PRK14762 membrane protein; Provisional
Probab=60.45 E-value=9.5 Score=26.43 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12966 689 LVLGVIGAIVLIGLAFLC 706 (741)
Q Consensus 689 Ivlgvi~~ivliGl~lLl 706 (741)
|++.+++-|.||||+.+.
T Consensus 3 i~lw~i~iifligllvvt 20 (27)
T PRK14762 3 IILWAVLIIFLIGLLVVT 20 (27)
T ss_pred eHHHHHHHHHHHHHHHHH
Confidence 667778788899988754
No 105
>PRK05325 hypothetical protein; Provisional
Probab=60.38 E-value=14 Score=42.18 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=32.4
Q ss_pred ceeEEeecCCCChHHhHHH-HHHHHHHHHHHHHhhcCceeEEee
Q psy12966 123 VDLYYLMDLSNSMRDDKDR-LSALGDQLSASMQEVTSNFRLGFG 165 (741)
Q Consensus 123 vDly~LmDlS~SM~ddl~~-lk~l~~~l~~~l~~~t~~~r~Gfg 165 (741)
.=+++|||+||||...... +|+.---|..-|+..-.++.+=|.
T Consensus 223 AVmfclMDvSGSM~~~~K~lakrff~lly~fL~r~Y~~vEvvFI 266 (401)
T PRK05325 223 AVMFCLMDVSGSMDEAEKDLAKRFFFLLYLFLRRKYENVEVVFI 266 (401)
T ss_pred EEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEE
Confidence 5688999999999988744 455556667777777778877774
No 106
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=60.03 E-value=11 Score=42.27 Aligned_cols=41 Identities=20% Similarity=0.112 Sum_probs=32.7
Q ss_pred EEEEEEeccCCCcceeEEeecCCCChHHhHHHHHHHHHHHH
Q psy12966 110 RMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLS 150 (741)
Q Consensus 110 ~~~~~~~~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~ 150 (741)
.+.+.++++..-+-+|++|.|+|+||+.+-.-.-.+...|.
T Consensus 206 ~i~l~~~~pr~~~~~lvvL~DVSGSm~~ys~~~L~l~hAl~ 246 (395)
T COG3552 206 VILLVRRRPRRRKPPLVVLCDVSGSMSGYSRIFLHLLHALR 246 (395)
T ss_pred eehhhhcCCccCCCCeEEEEecccchhhhHHHHHHHHHHHH
Confidence 55667788889999999999999999998776655554444
No 107
>KOG3658|consensus
Probab=57.66 E-value=21 Score=42.74 Aligned_cols=106 Identities=22% Similarity=0.443 Sum_probs=56.7
Q ss_pred CCCCCCCCCCeEEeCceeeeCCCccCCccc---ccCCCCCCcCcccCccCCCCccccCC-CceecCCCCccCCCCCceec
Q psy12966 455 VRNSPNCSGFGTFKCGLCECDQSHFGRRCE---CDAESSQGITSTGCKADANSTMECSG-RGNCLCNQKSLDNIVNVIIS 530 (741)
Q Consensus 455 ~~~s~~Csg~G~c~cG~C~C~~G~~G~~Ce---C~~~~~~~~~~~~C~~~~~~~~~Csg-~G~C~cG~C~C~~~~~~~~G 530 (741)
++.++.| |||..+-|. .|+.||. ..|. |... .......|....+ ..||. +|-|-.-.|+=.. .|
T Consensus 463 E~~~sfC-GN~iVE~GE-ECDcG~~-~~~~D~CC~p~--~~~~~k~C~lk~g--aqCSpsqgpCC~~~Cqf~~-----~~ 530 (764)
T KOG3658|consen 463 ERESSFC-GNGIVEPGE-ECDCGFS-TDCKDSCCDPQ--PNLDEKPCTLKPG--AQCSPSQGPCCTPNCQFHT-----SG 530 (764)
T ss_pred Ccccccc-CCccccCCc-ccCcccc-cccCCcccCCC--CCCCCCCceeCCC--CccCCCCCCccCCcceeec-----cc
Confidence 4456778 889888875 6677776 5554 3211 1113456765554 56876 4555433333321 24
Q ss_pred Ccccccee-----ecCCCCCceeeecCceEecCCceeccccccCCCCcc-ccCccccCCcccccccccc
Q psy12966 531 HVIVTTEC-----CVLDLNTVGACVASAIVKTAGLVQRVTVAPLMTPVY-LLREERCARARESVSAVCA 593 (741)
Q Consensus 531 ~~~~~Cec-----C~~~~gG~G~C~cg~C~C~~G~~G~~~~~~C~~~~~-~~~~~~Csg~G~C~cG~C~ 593 (741)
.. |.+ |. +-++|+ |+ ...|+.+.. -++ .+|+..|.|.-|+|.
T Consensus 531 ~k---c~~~d~~~C~----~~s~Cn--------G~-----~aeCP~s~~~~d~-t~C~~~~~C~~G~C~ 578 (764)
T KOG3658|consen 531 EK---CREADEATCK----GESTCN--------GF-----SAECPPSPPKPDG-TVCNETGVCINGKCI 578 (764)
T ss_pred Ce---eeccccccCc----Cccccc--------CC-----ccCCcCCCCCCCC-CcccccceEeCCcCc
Confidence 44 543 32 122222 22 233433211 124 789999999999886
No 108
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=57.18 E-value=3.5 Score=34.92 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy12966 688 GLVLGVIGAIVLIGLAFLCLWKI 710 (741)
Q Consensus 688 ~Ivlgvi~~ivliGl~lLliwK~ 710 (741)
+|+++|+|++++|=|+++++||+
T Consensus 14 vIaG~Vvgll~ailLIlf~iyR~ 36 (64)
T PF01034_consen 14 VIAGGVVGLLFAILLILFLIYRM 36 (64)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666654
No 109
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=56.13 E-value=20 Score=40.34 Aligned_cols=43 Identities=19% Similarity=0.105 Sum_probs=30.8
Q ss_pred ceeEEeecCCCChHHhHHHH-HHHHHHHHHHHHhhcCceeEEee
Q psy12966 123 VDLYYLMDLSNSMRDDKDRL-SALGDQLSASMQEVTSNFRLGFG 165 (741)
Q Consensus 123 vDly~LmDlS~SM~ddl~~l-k~l~~~l~~~l~~~t~~~r~Gfg 165 (741)
.=+++|||+||||......| |+.---|..-|+..-.++.+=|.
T Consensus 203 AV~fc~MDvSGSM~~~~K~lak~ff~~ly~FL~~~Y~~VeivFI 246 (371)
T TIGR02877 203 AVVIAMMDTSGSMGQFKKYIARSFFFWMVKFLRTKYENVEICFI 246 (371)
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhccCceEEEEE
Confidence 55889999999998876554 33444556667776777777764
No 110
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=56.08 E-value=7.3 Score=30.61 Aligned_cols=19 Identities=37% Similarity=1.064 Sum_probs=14.7
Q ss_pred CceeeeCCCccCCccc-ccC
Q psy12966 469 CGLCECDQSHFGRRCE-CDA 487 (741)
Q Consensus 469 cG~C~C~~G~~G~~Ce-C~~ 487 (741)
-|+|.|.++|.|+.|+ |..
T Consensus 17 ~G~C~C~~~~~G~~C~~C~~ 36 (49)
T PF00053_consen 17 TGQCVCKPGTTGPRCDQCKP 36 (49)
T ss_dssp CEEESBSTTEESTTS-EE-T
T ss_pred CCEEeccccccCCcCcCCCC
Confidence 5789999999999997 543
No 111
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=55.38 E-value=39 Score=40.00 Aligned_cols=169 Identities=15% Similarity=0.181 Sum_probs=97.2
Q ss_pred ceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhc-CceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeec
Q psy12966 123 VDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVT-SNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMS 201 (741)
Q Consensus 123 vDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t-~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~ 201 (741)
=+..-+.|+||||...--. .+..|.--+++++ .-|+=.|.+|...|-+ |.+.
T Consensus 341 ~n~iav~DvSGSM~~~pm~---vaiaLgll~ae~~~~pf~~~~ITFs~~P~~------------------------~~i~ 393 (534)
T PF11443_consen 341 ENCIAVCDVSGSMSGPPMD---VAIALGLLIAELNKGPFKGRFITFSENPQL------------------------HKIK 393 (534)
T ss_pred cceEEEEecCCccCccHHH---HHHHHHHHHHHhcccccCCeEEeecCCceE------------------------EEec
Confidence 5788999999999998222 2333333344443 3567777888775332 2333
Q ss_pred CCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccC-CccEEEEEecCCCCCcCCCCCccceecCCCCccc
Q psy12966 202 LSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRD-RARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCH 280 (741)
Q Consensus 202 lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~-~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Ch 280 (741)
-. +..+-.+.+....-.+| -.=+++||.|+..|+ +-+=.. +=-|-|++++|=-|..|..+.
T Consensus 394 g~-~l~ekv~~~~~~~wg~n-Tn~~aVFdlIL~~Av---~~~l~~e~M~k~lfV~SDMeFD~a~~~~------------- 455 (534)
T PF11443_consen 394 GD-TLREKVRFIRRMDWGMN-TNFQAVFDLILETAV---KNKLKQEDMPKRLFVFSDMEFDQASNSS------------- 455 (534)
T ss_pred CC-CHHHHHHHHHhCCcccC-CcHHHHHHHHHHHHH---HcCCChHHCCceEEEEeccccccccccc-------------
Confidence 33 34444444554444444 345889999999997 222222 223567778999998875211
Q ss_pred ccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecchhhhHHHHhhc---cc----CceeeeccCCcchHHHHHHHH
Q psy12966 281 MDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTH---IE----GSSSGTLTNDSSNVVDLVKDQ 353 (741)
Q Consensus 281 l~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~~~~~Y~~l~~~---i~----gs~vg~L~~dSsNiv~lI~~a 353 (741)
+..+.+ ....|.++.+++|..+ +.- +|..|... +| -.-|.-++.-|.|++.++.+.
T Consensus 456 ------~~~w~T----~~e~i~~~f~~aGY~~----P~i---VFWNl~~~~~~~PV~~~~~GvaLVSGfS~~llk~~l~~ 518 (534)
T PF11443_consen 456 ------DRPWET----NFEAIKRKFEEAGYEL----PEI---VFWNLRGRSSNKPVTANEKGVALVSGFSPNLLKMFLEG 518 (534)
T ss_pred ------cCcccc----HHHHHHHHHHHhCCCC----Cce---EEeecCCCCCCCCceeCCCCeEEEecCCHHHHHHHHcC
Confidence 101111 3466899999998762 111 13333221 22 113445688899999987654
No 112
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=55.35 E-value=12 Score=31.91 Aligned_cols=24 Identities=33% Similarity=0.681 Sum_probs=20.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLliw 708 (741)
.+.+.+.|.+.|++|+|+.+++.|
T Consensus 41 ~~~GfaiG~~~AlvLv~ip~~l~~ 64 (64)
T PF09472_consen 41 GIKGFAIGFLFALVLVGIPILLMF 64 (64)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhC
Confidence 567889999999999999998877
No 113
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=55.06 E-value=4 Score=40.61 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=0.0
Q ss_pred CCCchhhHHHHHHHHHH-HHHHHHHHHHHH
Q psy12966 682 PHVYILGLVLGVIGAIV-LIGLAFLCLWKI 710 (741)
Q Consensus 682 ~~~~~~~Ivlgvi~~iv-liGl~lLliwK~ 710 (741)
.-.-+.+||+||++||- |.||++++++|+
T Consensus 127 ~T~tLVGIIVGVLlaIG~igGIIivvvRKm 156 (162)
T PF05808_consen 127 STVTLVGIIVGVLLAIGFIGGIIIVVVRKM 156 (162)
T ss_dssp ------------------------------
T ss_pred ceeeeeeehhhHHHHHHHHhheeeEEeehh
Confidence 34567778888877776 445666666664
No 114
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=55.03 E-value=5.8 Score=47.07 Aligned_cols=27 Identities=11% Similarity=0.300 Sum_probs=10.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLCLWKIL 711 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLliwK~~ 711 (741)
|+|+||+.++..+|++=|+++|.|||+
T Consensus 268 NlWII~gVlvPv~vV~~Iiiil~~~LC 294 (684)
T PF12877_consen 268 NLWIIAGVLVPVLVVLLIIIILYWKLC 294 (684)
T ss_pred CeEEEehHhHHHHHHHHHHHHHHHHHh
Confidence 444433333322233333444445555
No 115
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=54.53 E-value=18 Score=33.32 Aligned_cols=38 Identities=11% Similarity=0.006 Sum_probs=29.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy12966 683 HVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREF 720 (741)
Q Consensus 683 ~~~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~ 720 (741)
+...|....||+++.|.+-||+.|+.|.=+-.+.+.-|
T Consensus 13 ~g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY 50 (102)
T PF15176_consen 13 GGRSWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASY 50 (102)
T ss_pred CCcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 35789999999989999999998888876655555444
No 116
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=53.42 E-value=12 Score=26.44 Aligned_cols=25 Identities=40% Similarity=0.802 Sum_probs=17.9
Q ss_pred CCCCCeEEeC--c--eeeeCCCccCCccc
Q psy12966 460 NCSGFGTFKC--G--LCECDQSHFGRRCE 484 (741)
Q Consensus 460 ~Csg~G~c~c--G--~C~C~~G~~G~~Ce 484 (741)
.|..+|.|.- | .|.|.+||.|..|+
T Consensus 10 ~C~~~~~C~~~~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 10 PCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred CcCCCCEeECCCCCeEeECCCCCcCCcCC
Confidence 3655666642 2 58999999998875
No 117
>KOG1836|consensus
Probab=52.78 E-value=27 Score=46.47 Aligned_cols=115 Identities=22% Similarity=0.415 Sum_probs=64.3
Q ss_pred cceeEEEecccCCC-ccCCCCCCCCCCCCCCCCCCCeEEeCceeeeCCCccCCccc-ccCCCCCCcCcccCccCCCCccc
Q psy12966 430 IDETLRVDLEMQCE-CPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCE-CDAESSQGITSTGCKADANSTME 507 (741)
Q Consensus 430 ~~e~l~v~l~~~C~-C~Ce~~~~~~~~~~s~~Csg~G~c~cG~C~C~~G~~G~~Ce-C~~~~~~~~~~~~C~~~~~~~~~ 507 (741)
|.+.|+-+.+..|. |.|-..+ ....+..|... -|.|.|.+.=.|..|. |-.+...-.....|.. -.
T Consensus 876 ~gd~l~~~p~~~c~~c~c~p~g---s~~~~~~c~~~----tGQcec~~~v~g~~c~~c~~g~fnl~s~~gC~~-----c~ 943 (1705)
T KOG1836|consen 876 FGDPLAPNPEDKCFACGCVPAG---SELPSLTCNPV----TGQCECKPNVEGRDCLYCFKGFFNLNSGVGCEP-----CN 943 (1705)
T ss_pred cccccCCCcCCccccccCccCC---cccccccCCCc----ccceeccCCCCccccccccccccccCCCCCccc-----cc
Confidence 34555556677775 8887653 33334556532 3667777777777774 4332211111123331 12
Q ss_pred cCCC----ceec--CCCCccCCCCCceecCccccceeecCC-CC------------Cce----eee--cCceEecCCcee
Q psy12966 508 CSGR----GNCL--CNQKSLDNIVNVIISHVIVTTECCVLD-LN------------TVG----ACV--ASAIVKTAGLVQ 562 (741)
Q Consensus 508 Csg~----G~C~--cG~C~C~~~~~~~~G~~~~~CecC~~~-~g------------G~G----~C~--cg~C~C~~G~~G 562 (741)
|+-. ..|. .|+|.|.. +++|.. |.-|..+ -+ .+| .|+ .|+|.|.+++.|
T Consensus 944 c~~~gs~~~~c~~~tGqc~c~~---gVtgqr---c~qc~~~~~~~~~~gc~~c~c~~~Gs~~~qc~~~~G~c~c~~~~~g 1017 (1705)
T KOG1836|consen 944 CDPTGSESSDCDVGTGQCYCRP---GVTGQR---CDQCETYHFGFQTEGCGLCECDPLGSRGFQCDPEDGQCPCRPGFEG 1017 (1705)
T ss_pred ccccccccccccccCCceeeec---Cccccc---cCccccCcccccccCCcceecccCCcccceecccCCeeeecCCCCC
Confidence 3222 2565 68899943 577888 7764433 11 233 464 489999999988
No 118
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=52.45 E-value=2.1e+02 Score=33.03 Aligned_cols=179 Identities=18% Similarity=0.195 Sum_probs=98.2
Q ss_pred EEEEeccCCCc-ceeEEeecCCCChHHh--HHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCC
Q psy12966 112 VVDYAQAEDYP-VDLYYLMDLSNSMRDD--KDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCA 188 (741)
Q Consensus 112 ~~~~~~~~~~p-vDly~LmDlS~SM~dd--l~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~ 188 (741)
.|.|.+++... .-+.+|+|.|+||--+ +--+|+.+-.|.--++.....=.+-|..|-|. ..+.|
T Consensus 452 Dvev~etE~rt~aAvallvDtS~SM~~eGRw~PmKQtALALhHLv~TrfrGD~l~~i~Fgr~-----A~~v~-------- 518 (652)
T COG4867 452 DVEVAETETRTQAAVALLVDTSFSMVMEGRWLPMKQTALALHHLVCTRFRGDALQIIAFGRY-----ARTVT-------- 518 (652)
T ss_pred ceeehhhhhhcccceeeeeeccHHHHHhccCCchHHHHHHHHHHHHhcCCCcceEEEeccch-----hcccC--------
Confidence 34556665443 6688999999999644 34477777777766666555556677777764 11111
Q ss_pred CCCCCcceeeeecCCccHHHHHHhccceee-ccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCC--CcC-C
Q psy12966 189 GCAAPYGYHNVMSLSQDTSRFSAQVKGANV-SGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEF--HHA-G 264 (741)
Q Consensus 189 ~c~~~f~f~~~l~lT~d~~~F~~~v~~~~i-sgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~--H~a-g 264 (741)
+.+... +..+.- .-| .--||.-|- .-+.-.+...+.||++||.-+ |.. +
T Consensus 519 -----------------v~eLt~-l~~v~eqgTN------lhhaL~LA~---r~l~Rh~~~~~~il~vTDGePtAhle~~ 571 (652)
T COG4867 519 -----------------AAELTG-LAGVYEQGTN------LHHALALAG---RHLRRHAGAQPVVLVVTDGEPTAHLEDG 571 (652)
T ss_pred -----------------HHHHhc-CCCccccccc------hHHHHHHHH---HHHHhCcccCceEEEEeCCCccccccCC
Confidence 111100 111100 011 222333332 122333467899999999854 655 4
Q ss_pred CCCccceecCCCCcccccCCCCccccccCCCC--------CHHHHHHHHHhcCccE-EEEEecc--hhhhHHHHhhcccC
Q psy12966 265 DGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYP--------SISQINMKVKQNSINL-IFAVTAE--QIGVYERLKTHIEG 333 (741)
Q Consensus 265 Dg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYP--------Sv~ql~~~l~e~~I~~-Ifavt~~--~~~~Y~~l~~~i~g 333 (741)
||+. |. ++|| ++-|+.+. ...+|++ ||-.... ..+.-+.++....|
T Consensus 572 DG~~------------------~~----f~yp~DP~t~~~Tvr~~d~~-~r~G~q~t~FrLg~DpgL~~Fv~qva~rv~G 628 (652)
T COG4867 572 DGTS------------------VF----FDYPPDPRTIAHTVRGFDDM-ARLGAQVTIFRLGSDPGLARFIDQVARRVQG 628 (652)
T ss_pred CCce------------------Ee----cCCCCChhHHHHHHHHHHHH-HhccceeeEEeecCCHhHHHHHHHHHHHhCC
Confidence 5542 11 2333 24444433 4455544 5666553 45556677777776
Q ss_pred ceeeeccCCcchHHHHHHHHhhh
Q psy12966 334 SSSGTLTNDSSNVVDLVKDQYNK 356 (741)
Q Consensus 334 s~vg~L~~dSsNiv~lI~~aY~~ 356 (741)
-.+ ..|-.||-+.|..-|-.
T Consensus 629 ~vv---~pdldglGaaVvgdylr 648 (652)
T COG4867 629 RVV---VPDLDGLGAAVVGDYLR 648 (652)
T ss_pred eEE---ecCcchhhHHHHHHHHh
Confidence 544 35677888877777743
No 119
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=51.35 E-value=18 Score=33.79 Aligned_cols=8 Identities=13% Similarity=-0.022 Sum_probs=5.7
Q ss_pred CCCCCCCC
Q psy12966 733 DTKLNSLI 740 (741)
Q Consensus 733 ~~~~NPly 740 (741)
...++|+|
T Consensus 42 ~~E~~p~Y 49 (107)
T PF15330_consen 42 PTEDDPCY 49 (107)
T ss_pred CCCCCccc
Confidence 34578988
No 120
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=50.94 E-value=8.2 Score=40.49 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=24.9
Q ss_pred CCchhhHHHHH-HHHHHHHHHHHHHHHHHHhhh
Q psy12966 683 HVYILGLVLGV-IGAIVLIGLAFLCLWKILTSI 714 (741)
Q Consensus 683 ~~~~~~Ivlgv-i~~ivliGl~lLliwK~~~~i 714 (741)
.|-||.-...| |..|.+|||++++.|+-+++.
T Consensus 16 sPWiWltagaVSIslia~iGlllvia~rGl~yF 48 (289)
T COG4985 16 SPWIWLTAGAVSISLIAVIGLLLVIAWRGLTYF 48 (289)
T ss_pred CCeEEEecchhHHHHHHHHHHHHHHHhcccccc
Confidence 35667766666 666779999999999988765
No 121
>PF07096 DUF1358: Protein of unknown function (DUF1358); InterPro: IPR009792 This family consists of several hypothetical eukaryotic proteins of around 125 residues in length. The function of this family is unknown.
Probab=49.95 E-value=25 Score=33.70 Aligned_cols=37 Identities=22% Similarity=0.480 Sum_probs=31.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAK 722 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~k 722 (741)
-+-++..|.+.++.-.|++.+.+||++- +||..||+-
T Consensus 79 AlRALgWGTlyA~~GvG~l~~~iwK~~G-v~~~~eFr~ 115 (124)
T PF07096_consen 79 ALRALGWGTLYAVCGVGVLVFGIWKLSG-VKNLKEFRE 115 (124)
T ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHHhc-cCcHHHHHH
Confidence 3445788889999999999999999875 889999863
No 122
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=49.24 E-value=9.2 Score=41.71 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=14.9
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q psy12966 678 RECPPHVYILGLVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 678 ~~Cp~~~~~~~Ivlgvi~~ivliGl~lLliw 708 (741)
.+|+.-.. -+++.|+.|++|+||+||++.
T Consensus 262 ~~C~~D~~--~~~vPIaVG~~La~lvlivLi 290 (306)
T PF01299_consen 262 EECSSDDT--SDLVPIAVGAALAGLVLIVLI 290 (306)
T ss_pred hcCCcCCc--cchHHHHHHHHHHHHHHHHHH
Confidence 47976432 344444445555555555433
No 123
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=49.05 E-value=16 Score=42.01 Aligned_cols=64 Identities=27% Similarity=0.304 Sum_probs=42.1
Q ss_pred EEEEEeeCccEEEEEEEeccCCCc-ce--eEEeecCCCChHHhHHHHHH-HHHHHHHHHHhhc-CceeEEeeE
Q psy12966 99 VSLKLRINEAYRMVVDYAQAEDYP-VD--LYYLMDLSNSMRDDKDRLSA-LGDQLSASMQEVT-SNFRLGFGS 166 (741)
Q Consensus 99 v~~~LR~G~~~~~~~~~~~~~~~p-vD--ly~LmDlS~SM~ddl~~lk~-l~~~l~~~l~~~t-~~~r~Gfgs 166 (741)
++|-+-|-+|..| ++-++.. +| +-.|+|.||||..---+|.. -+..|+.+|.... ++--+||-+
T Consensus 391 ~Rliidp~qplsF----kqe~D~~frdtvVtlviDnSGSMrGRpItvAatcAdilArtLeRcgVk~eIlGFTT 459 (620)
T COG4547 391 VRLIIDPMQPLSF----KQEEDTRFRDTVVTLVIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTT 459 (620)
T ss_pred eEEEeCCCCcccc----chhhcchHhhhhheeeeccCCCcCCcceehhHHHHHHHHHHHHHcCCceEEeeeee
Confidence 3455556665554 4444443 33 45789999999987666554 5677888888876 455668865
No 124
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=48.98 E-value=23 Score=30.45 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=19.1
Q ss_pred eeecceeEEEEEeeCccEEEEEEEeccCCCc
Q psy12966 92 VQISPQHVSLKLRINEAYRMVVDYAQAEDYP 122 (741)
Q Consensus 92 ~qi~Pq~v~~~LR~G~~~~~~~~~~~~~~~p 122 (741)
+...|+.+. .|.||+.++++++|+.+++-+
T Consensus 36 ~~~~~~~~~-~l~pG~s~~~~~~V~vp~~a~ 65 (78)
T PF10633_consen 36 VSASPASVP-SLPPGESVTVTFTVTVPADAA 65 (78)
T ss_dssp ---EEEEE---B-TTSEEEEEEEEEE-TT--
T ss_pred ccCCccccc-cCCCCCEEEEEEEEECCCCCC
Confidence 457788888 899999999999999887655
No 125
>PHA02887 EGF-like protein; Provisional
Probab=48.32 E-value=11 Score=35.58 Aligned_cols=25 Identities=28% Similarity=0.627 Sum_probs=19.4
Q ss_pred CCCCCeEEeC------ceeeeCCCccCCcccc
Q psy12966 460 NCSGFGTFKC------GLCECDQSHFGRRCEC 485 (741)
Q Consensus 460 ~Csg~G~c~c------G~C~C~~G~~G~~CeC 485 (741)
-|- ||+|.= -.|.|++||+|..|+-
T Consensus 93 YCi-HG~C~yI~dL~epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 93 FCI-NGECMNIIDLDEKFCICNKGYTGIRCDE 123 (126)
T ss_pred Eee-CCEEEccccCCCceeECCCCcccCCCCc
Confidence 564 687741 3799999999999973
No 126
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=47.51 E-value=20 Score=24.82 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=17.9
Q ss_pred CCCCCeEEeC----ceeeeCCCccCC-ccc
Q psy12966 460 NCSGFGTFKC----GLCECDQSHFGR-RCE 484 (741)
Q Consensus 460 ~Csg~G~c~c----G~C~C~~G~~G~-~Ce 484 (741)
.|..+|.|.- -.|.|..||.|. .|+
T Consensus 7 ~C~~~~~C~~~~~~~~C~C~~g~~g~~~C~ 36 (36)
T cd00053 7 PCSNGGTCVNTPGSYRCVCPPGYTGDRSCE 36 (36)
T ss_pred CCCCCCEEecCCCCeEeECCCCCcccCCcC
Confidence 4666677753 268999999998 663
No 127
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=47.47 E-value=12 Score=29.28 Aligned_cols=18 Identities=50% Similarity=1.285 Sum_probs=15.1
Q ss_pred CceeeeCCCccCCccc-cc
Q psy12966 469 CGLCECDQSHFGRRCE-CD 486 (741)
Q Consensus 469 cG~C~C~~G~~G~~Ce-C~ 486 (741)
-|+|.|.+++.|+.|+ |+
T Consensus 17 ~G~C~C~~~~~G~~C~~C~ 35 (46)
T smart00180 17 TGQCECKPNVTGRRCDRCA 35 (46)
T ss_pred CCEEECCCCCCCCCCCcCC
Confidence 4788999999999997 54
No 128
>KOG4260|consensus
Probab=47.03 E-value=14 Score=39.68 Aligned_cols=35 Identities=11% Similarity=0.023 Sum_probs=22.2
Q ss_pred ceecCccccceeecCCC----CCceeeec-------CceEecCCceecc
Q psy12966 527 VIISHVIVTTECCVLDL----NTVGACVA-------SAIVKTAGLVQRV 564 (741)
Q Consensus 527 ~~~G~~~~~CecC~~~~----gG~G~C~c-------g~C~C~~G~~G~~ 564 (741)
+-+|++ |.-||... +|+|.|.- |.|.|++||+|+.
T Consensus 135 gtyGpd---Cl~Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~ 180 (350)
T KOG4260|consen 135 GTYGPD---CLQCPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPL 180 (350)
T ss_pred CCcCCc---cccCCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCcc
Confidence 457899 88787542 26677642 4666666666654
No 129
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=46.60 E-value=18 Score=26.09 Aligned_cols=25 Identities=44% Similarity=0.848 Sum_probs=18.4
Q ss_pred CCCCCeEEeC--c--eeeeCCCcc-CCccc
Q psy12966 460 NCSGFGTFKC--G--LCECDQSHF-GRRCE 484 (741)
Q Consensus 460 ~Csg~G~c~c--G--~C~C~~G~~-G~~Ce 484 (741)
.|..+|.|.- | .|.|.+||. |..|+
T Consensus 10 ~C~~~~~C~~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 10 PCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred CcCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence 4666677752 3 589999999 88885
No 130
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=46.35 E-value=9.8 Score=38.18 Aligned_cols=15 Identities=40% Similarity=0.855 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHH
Q psy12966 686 ILGLVLGVIGAIVLI 700 (741)
Q Consensus 686 ~~~Ivlgvi~~ivli 700 (741)
+.+|++|||++||+|
T Consensus 77 ~~~iivgvi~~Vi~I 91 (179)
T PF13908_consen 77 ITGIIVGVICGVIAI 91 (179)
T ss_pred eeeeeeehhhHHHHH
Confidence 556777777767666
No 131
>PHA03265 envelope glycoprotein D; Provisional
Probab=46.30 E-value=11 Score=41.69 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHH
Q psy12966 683 HVYILGLVLGVIGAIVLIGLAFLCLWK 709 (741)
Q Consensus 683 ~~~~~~Ivlgvi~~ivliGl~lLliwK 709 (741)
.+++-+||++.|+|+|++|.||.++||
T Consensus 347 ~~~~g~~ig~~i~glv~vg~il~~~~r 373 (402)
T PHA03265 347 STFVGISVGLGIAGLVLVGVILYVCLR 373 (402)
T ss_pred CcccceEEccchhhhhhhhHHHHHHhh
Confidence 457777888889999999999999994
No 132
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=45.72 E-value=35 Score=38.84 Aligned_cols=52 Identities=17% Similarity=0.170 Sum_probs=39.6
Q ss_pred eccCCCcceeEEeecCCCChH------HhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecc
Q psy12966 116 AQAEDYPVDLYYLMDLSNSMR------DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDK 170 (741)
Q Consensus 116 ~~~~~~pvDly~LmDlS~SM~------ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk 170 (741)
...+. ..++++++|.+.||. ..++..-.++-.|+.. .+-.+-++|+..|-+.
T Consensus 219 fe~er-~~~v~l~lD~~~~m~~~~~~~~~~e~av~~a~~la~~--~l~~gd~vg~~~~~~~ 276 (416)
T COG1721 219 FEEER-GRTVVLVLDASRSMLFGSGVASKFEEAVRAAASLAYA--ALKNGDRVGLLIFGGG 276 (416)
T ss_pred hhhhc-CceEEEEEeCCccccCCCCCccHHHHHHHHHHHHHHH--HHhCCCeeEEEEECCC
Confidence 33444 799999999999999 6778777777777643 4456788899888653
No 133
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=44.44 E-value=16 Score=33.99 Aligned_cols=26 Identities=35% Similarity=0.772 Sum_probs=0.0
Q ss_pred CCCCCCeEEeCc---------eeeeCC-------------CccCCccc
Q psy12966 459 PNCSGFGTFKCG---------LCECDQ-------------SHFGRRCE 484 (741)
Q Consensus 459 ~~Csg~G~c~cG---------~C~C~~-------------G~~G~~Ce 484 (741)
..|||||.|.-. .|.|.+ .|.|..|+
T Consensus 13 n~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCq 60 (103)
T PF12955_consen 13 NNCSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQ 60 (103)
T ss_pred cCCCCCceEeeccCCCccceEEEEeeccccccccccCceeeecccccc
No 134
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=42.96 E-value=76 Score=31.09 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=28.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHhcccCCCCCCC
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLCLWKILTSIHDR------REFAKFEKERMLAKWDTKLNSL 739 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~Dr------rE~~kFekE~~~akw~~~~NPl 739 (741)
....|++|+++ .|.+++++.+..|.++. .- +||+.-+.||+... .-|||
T Consensus 73 ewk~v~~~~~~-~i~~s~~l~~~~r~~~~--~~~P~T~~~Ew~ea~~~~m~~~---~~nPi 127 (142)
T PF02936_consen 73 EWKKVFGGVFI-FIGFSVLLFIWQRSYVY--PPLPHTFSKEWQEAQNERMLDM---KVNPI 127 (142)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHT-------GGGSHHHHHHHHHHHHHT---TSSTT
T ss_pred chHHHHHHHHH-HHHHHHHHHHHHHHHhC--CCCCCCcCHHHHHHHHHHHHHc---CCCCC
Confidence 34445555544 44444444444565543 22 69999999999874 45786
No 135
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=42.80 E-value=10 Score=39.50 Aligned_cols=42 Identities=14% Similarity=0.350 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-hcccC
Q psy12966 687 LGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKERM-LAKWD 733 (741)
Q Consensus 687 ~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~kFekE~~-~akw~ 733 (741)
.+||.|+++.||+|.++.| ||.+- .+..++-+|+.++ +.-|-
T Consensus 41 iaiVAG~~tVILVI~i~v~--vR~CR---q~~~k~g~QagKqe~~e~~ 83 (221)
T PF08374_consen 41 IAIVAGIMTVILVIFIVVL--VRYCR---QSPHKKGYQAGKQENSEWV 83 (221)
T ss_pred eeeecchhhhHHHHHHHHH--HHHHh---hccccchhhhccccccccc
Confidence 4466666655555544333 34332 2334444555444 55663
No 136
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=42.69 E-value=41 Score=33.69 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=27.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy12966 683 HVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRRE 719 (741)
Q Consensus 683 ~~~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE 719 (741)
+++++.+++-+|..+||++|+-.++||-+.-+-|.|+
T Consensus 15 ~~~~~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~ 51 (173)
T PRK13453 15 GVEWGTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRE 51 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677788888999998889998777666654
No 137
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=42.61 E-value=41 Score=33.00 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=29.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy12966 684 VYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRRE 719 (741)
Q Consensus 684 ~~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE 719 (741)
.+++.+++-+|..+||++|+--++||-+..+-|.|+
T Consensus 3 ~~~~~~~~~~inF~il~~iL~~f~~kpi~~~l~~R~ 38 (159)
T PRK13461 3 INIPTIIATIINFIILLLILKHFFFDKIKAVIDSRQ 38 (159)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 466677788888889999998999998887777664
No 138
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=41.84 E-value=86 Score=26.03 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHH
Q psy12966 688 GLVLGVIGAIVLIGLAF-LCLWKILTSIHDRRE 719 (741)
Q Consensus 688 ~Ivlgvi~~ivliGl~l-LliwK~~~~i~DrrE 719 (741)
+.|+++||+.+..|.++ .-+|........+|+
T Consensus 16 ~tV~~Lig~T~~~g~~~~~~~y~~~~~~r~~~~ 48 (59)
T PF14880_consen 16 TTVLGLIGFTVYGGGLTVYTVYSYFKYNRRRRA 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777766554443 344555554444444
No 139
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=41.28 E-value=41 Score=34.79 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=27.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy12966 684 VYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRR 718 (741)
Q Consensus 684 ~~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~Drr 718 (741)
|++|.+++-+|..+||++|+.-++||-+..+-|.|
T Consensus 46 ~~~~~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R 80 (205)
T PRK06231 46 PNFWVFIAHLIAFSILLLLGIFLFWKPTQRFLNKR 80 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777788889999999999999665555544
No 140
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=41.27 E-value=46 Score=28.78 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=31.5
Q ss_pred cceeEEeecCCCChH------HhHHHHHHHHHHHHHHHHhhcCce
Q psy12966 122 PVDLYYLMDLSNSMR------DDKDRLSALGDQLSASMQEVTSNF 160 (741)
Q Consensus 122 pvDly~LmDlS~SM~------ddl~~lk~l~~~l~~~l~~~t~~~ 160 (741)
..++++++|++.+|. ..++.+-..+..|+..+.+....+
T Consensus 40 ~~~~~i~ld~~~~~~~~~~~~~~~e~~l~~a~~l~~~~~~~g~~v 84 (86)
T PF01882_consen 40 SQPVWIVLDLSPSMYFGSNGRSKFERALSAAASLANQALRQGDPV 84 (86)
T ss_pred CCcEEEEEECCCccccCcCCCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 489999999999997 678888888888887777654443
No 141
>smart00423 PSI domain found in Plexins, Semaphorins and Integrins.
Probab=41.15 E-value=25 Score=27.23 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=8.1
Q ss_pred CCCCccccccC
Q psy12966 3 ICPVCPTYNSS 13 (741)
Q Consensus 3 ~~p~CaWC~~~ 13 (741)
.+|.|+||.+.
T Consensus 14 ~~~~C~Wc~~~ 24 (46)
T smart00423 14 RDPYCAWCSSQ 24 (46)
T ss_pred CCCCCCccCCC
Confidence 45679999844
No 142
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=40.83 E-value=46 Score=32.85 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=28.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy12966 684 VYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRRE 719 (741)
Q Consensus 684 ~~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE 719 (741)
.|++.+++-+|..+||++|+--++||=+.-+-|.|+
T Consensus 6 ~~~~~~~~~~inflil~~lL~~fl~kpi~~~l~~R~ 41 (164)
T PRK14473 6 INLGLLIAQLINFLLLIFLLRTFLYRPVLNLLNERT 41 (164)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788889999999999997777666664
No 143
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=40.45 E-value=40 Score=25.85 Aligned_cols=21 Identities=10% Similarity=0.390 Sum_probs=13.2
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFL 705 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lL 705 (741)
...+|+.||++++++|-|.++
T Consensus 4 s~IaIIv~V~vg~~iiii~~~ 24 (38)
T PF02439_consen 4 STIAIIVAVVVGMAIIIICMF 24 (38)
T ss_pred chhhHHHHHHHHHHHHHHHHH
Confidence 456777777776666644443
No 144
>COG3825 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.91 E-value=51 Score=36.36 Aligned_cols=58 Identities=21% Similarity=0.269 Sum_probs=42.7
Q ss_pred EEEEEeccCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeec
Q psy12966 111 MVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVD 169 (741)
Q Consensus 111 ~~~~~~~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvD 169 (741)
.+|..++-....|-|..|||.-+||.+.+..+..+.+.+-.+.+. ++-+-+.+-+|-|
T Consensus 220 ldiqmRPer~n~vklLll~D~ggsMd~hik~~EelfsA~k~Efk~-le~~yfhn~~Ye~ 277 (393)
T COG3825 220 LDIQMRPERRNQVKLLLLIDVGGSMDDHIKAVEELFSAAKAEFKH-LEYFYFHNCSYED 277 (393)
T ss_pred ceeecchhhhcceeEEEEEecCcchhHHHHHHHHHHHHHHHHHhc-CceeeeecccchH
Confidence 344556666777999999999999999999998888776655543 4555566655544
No 145
>KOG0196|consensus
Probab=39.75 E-value=51 Score=40.68 Aligned_cols=84 Identities=21% Similarity=0.435 Sum_probs=50.7
Q ss_pred EEEEEEeccCCCCCcccceEEEEEecccceeEEEecccCCCccCCCCCCCCCCCCCCCCCCCeEEe--CceeeeCCCc--
Q psy12966 403 FEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFK--CGLCECDQSH-- 478 (741)
Q Consensus 403 F~v~v~~~~Cp~~~~~~~~~~~I~~~g~~e~l~v~l~~~C~C~Ce~~~~~~~~~~s~~Csg~G~c~--cG~C~C~~G~-- 478 (741)
..|.|--++||..-.. .-.|.=.+.|-..+..|++...|-=.=+... .....-.|++.|.-. -|.|.|++||
T Consensus 194 lsVrvyYkkCp~~~~n-lA~FpeTvtGa~~tslv~v~GtCV~nA~~~~---~~~p~m~C~~dGeWlvpiG~C~C~aGye~ 269 (996)
T KOG0196|consen 194 LSVRVYYKKCPETTRN-LAHFPETVTGAESTSLVEVRGSCVPNAEEEP---VPVPRMYCSGDGEWLVPIGGCVCKAGYEE 269 (996)
T ss_pred EEEEeeeecChHHHhh-hccCCCcCCCCCccceEEecccccCCCccCC---CCCceeEEcCCCcEEEEcCceeecCCCCc
Confidence 4566777899964221 0123333445445666777776543333220 011233699888874 5999999998
Q ss_pred --cCCccc-ccCCCC
Q psy12966 479 --FGRRCE-CDAESS 490 (741)
Q Consensus 479 --~G~~Ce-C~~~~~ 490 (741)
.|..|+ |+.+..
T Consensus 270 ~~~~~~C~aCp~G~y 284 (996)
T KOG0196|consen 270 AENGKACQACPPGTY 284 (996)
T ss_pred ccCCCcceeCCCCcc
Confidence 578897 887664
No 146
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=38.96 E-value=48 Score=33.15 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=28.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy12966 683 HVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRRE 719 (741)
Q Consensus 683 ~~~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE 719 (741)
.++++.++.-+|..+||++|+--++||-+..+-|.|+
T Consensus 15 ~~~~~~~~~~~i~Flil~~lL~~~l~kpi~~~l~~R~ 51 (175)
T PRK14472 15 SPNPGLIFWTAVTFVIVLLILKKIAWGPILSALEERE 51 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455566677777888999998999998888777764
No 147
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=38.73 E-value=62 Score=30.98 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy12966 694 IGAIVLIGLAFLCLWKILTSIHDRREFAKFEKE 726 (741)
Q Consensus 694 i~~ivliGl~lLliwK~~~~i~DrrE~~kFekE 726 (741)
+++|++|||++.+++-.+....+|.+.+..+.+
T Consensus 9 livlaIigil~~i~~p~~~~~~~~a~~~~~~~~ 41 (134)
T TIGR01710 9 MVVLVILGLLAALVAPKLFSQADKAKAQVAKAQ 41 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666555556665555444433
No 148
>COG4218 MtrF Tetrahydromethanopterin S-methyltransferase, subunit F [Coenzyme metabolism]
Probab=38.36 E-value=35 Score=29.48 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=19.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLCL 707 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLli 707 (741)
.+.+++.|++-|+||+|+++|+.
T Consensus 50 ~i~GlaiGfvfA~vLv~illlla 72 (73)
T COG4218 50 RIAGLAIGFVFAGVLVGILLLLA 72 (73)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Confidence 46788999999999999988874
No 149
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=37.65 E-value=46 Score=32.66 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-H-HHhhhhhHHHHH
Q psy12966 689 LVLGVIGAIVLIGLAFLCLW-K-ILTSIHDRREFA 721 (741)
Q Consensus 689 Ivlgvi~~ivliGl~lLliw-K-~~~~i~DrrE~~ 721 (741)
++..+|..+++++|+..+.| | +.-.|..|+++=
T Consensus 4 ~~w~~i~f~i~l~~l~~~~~~~pi~~~l~~R~~~I 38 (159)
T PRK09173 4 TFWAFVGLVLFLALVVYLKVPGMIARSLDARADRI 38 (159)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44444555566666666556 5 667777777653
No 150
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=37.49 E-value=37 Score=32.18 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=18.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12966 683 HVYILGLVLGVIGAIVLIGLAFLCLWKILT 712 (741)
Q Consensus 683 ~~~~~~Ivlgvi~~ivliGl~lLliwK~~~ 712 (741)
|..|+++|||.|. .--|||++|. |+|+-
T Consensus 9 ~a~Ia~mVlGFi~-fWPlGla~La-y~iw~ 36 (115)
T PF11014_consen 9 PAWIAAMVLGFIV-FWPLGLALLA-YMIWG 36 (115)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHH-HHHHH
Confidence 4456667777653 4567888876 66554
No 151
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=37.40 E-value=47 Score=27.53 Aligned_cols=22 Identities=18% Similarity=0.242 Sum_probs=16.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLC 706 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLl 706 (741)
+...|+.|+++++++++.++++
T Consensus 30 p~~~Ii~gii~~~~fV~~Lv~l 51 (56)
T PF11174_consen 30 PVHFIIVGIILAALFVAGLVLL 51 (56)
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 4566888888888877776665
No 152
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.39 E-value=65 Score=29.82 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy12966 694 IGAIVLIGLAFLCLWKILTSIHDRREFAKFEKE 726 (741)
Q Consensus 694 i~~ivliGl~lLliwK~~~~i~DrrE~~kFekE 726 (741)
+++|++|||++.++.--+....++.+-++.+++
T Consensus 16 LVvl~Iigil~~~~~p~~~~~~~~~~~~~~~~~ 48 (149)
T COG2165 16 LVVLAIIGILAALALPSLQGSIDKAKRLEAAQQ 48 (149)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 344566666666666556666666644444433
No 153
>PF06799 DUF1230: Protein of unknown function (DUF1230); InterPro: IPR009631 This family represents Ycf36, which is found in plants, encoded in the genomes of algal chloroplasts and in cyanobacteria. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=36.31 E-value=45 Score=32.84 Aligned_cols=42 Identities=29% Similarity=0.313 Sum_probs=33.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKE 726 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~kFekE 726 (741)
..-.|+.+.+||.+++.|++|-+|-=..+++||--=+.-|-|
T Consensus 61 ~~~~~l~~~~ga~~~~~l~llRlyLGW~YV~~RL~s~tV~YE 102 (144)
T PF06799_consen 61 PLEFILSGAVGALLLLLLVLLRLYLGWSYVGDRLLSATVEYE 102 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHhhhccCccccc
Confidence 455688889999999999999999999999998755544433
No 154
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=36.04 E-value=92 Score=29.08 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=49.6
Q ss_pred hHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHh
Q psy12966 228 GFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQ 307 (741)
Q Consensus 228 ~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e 307 (741)
|.+..+.|+ +.+.-++||+++|++.+. ..++.....+
T Consensus 29 G~~~vlkal--------k~gkaklViiA~D~~~~~-----------------------------------kkki~~~~~~ 65 (108)
T PTZ00106 29 GTKSTLKAL--------RNGKAKLVIISNNCPPIR-----------------------------------RSEIEYYAML 65 (108)
T ss_pred cHHHHHHHH--------HcCCeeEEEEeCCCCHHH-----------------------------------HHHHHHHHhh
Confidence 355666666 346789999999999553 4557777777
Q ss_pred cCccEEE-EEecchhhhHHHHhhccc----CceeeeccCCcchHHHHH
Q psy12966 308 NSINLIF-AVTAEQIGVYERLKTHIE----GSSSGTLTNDSSNVVDLV 350 (741)
Q Consensus 308 ~~I~~If-avt~~~~~~Y~~l~~~i~----gs~vg~L~~dSsNiv~lI 350 (741)
++|..+. ..+. ++|...++ .+.++++...-++++.++
T Consensus 66 ~~Vpv~~~~~t~------~eLG~A~Gk~~r~svvaI~D~G~a~~l~~~ 107 (108)
T PTZ00106 66 SKTGVHHYAGNN------NDLGTACGRHFRVSVMSITDAGDSDILRAL 107 (108)
T ss_pred cCCCEEEeCCCH------HHHHHHhCCccCeEEEEEeCcchHHHHhhc
Confidence 7877653 2332 45666665 236888888888877654
No 155
>PF12044 Metallopep: Putative peptidase family; InterPro: IPR021917 This family of proteins is functionally uncharacterised. However, it does contain an HEXXH motif characteristic of metallopeptidases. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 625 to 773 amino acids in length.
Probab=34.71 E-value=6.4e+02 Score=29.24 Aligned_cols=200 Identities=15% Similarity=0.204 Sum_probs=97.6
Q ss_pred CceeecceeEEEEEeeC--------ccEEEEEEEecc-CCCcceeEEeecCC--C-----------ChHHhHHHHHHHHH
Q psy12966 90 EAVQISPQHVSLKLRIN--------EAYRMVVDYAQA-EDYPVDLYYLMDLS--N-----------SMRDDKDRLSALGD 147 (741)
Q Consensus 90 ~~~qi~Pq~v~~~LR~G--------~~~~~~~~~~~~-~~~pvDly~LmDlS--~-----------SM~ddl~~lk~l~~ 147 (741)
..+-|+|-.-+|+|+-+ ....+++.|.+. ..+||-|.||+-=. + ....+++...+...
T Consensus 57 AlV~L~pG~N~l~~~~~s~~~~~~~~~~~l~l~y~P~~~~~pv~l~~lv~kDS~~~fd~p~~~~~~~~~n~l~~Ai~Klr 136 (423)
T PF12044_consen 57 ALVHLSPGENRLRLDFGSPKLTNCSHSSELTLNYLPLTNNPPVHLAYLVCKDSPGTFDAPPDRIQREEGNSLEAAIRKLR 136 (423)
T ss_pred EEEEccCCCCeEEEEeecCCCCCccceEEEEEEEecCCCCCcEEEEEEEccCCCCcccCChhhhccCCCCCHHHHHHHHH
Confidence 36777888777777554 346888888876 46789999998322 1 24455555333222
Q ss_pred HHHHHHHhhcC--ceeEEee--Ee--ecccccCccccCc--ccccCCCCCCCCCcceeeeecCCccHHHHHHhccceeec
Q psy12966 148 QLSASMQEVTS--NFRLGFG--SF--VDKVVMPYVSMVP--KNLLEPCAGCAAPYGYHNVMSLSQDTSRFSAQVKGANVS 219 (741)
Q Consensus 148 ~l~~~l~~~t~--~~r~Gfg--sF--vDk~~~P~~~~~p--~~l~~Pc~~c~~~f~f~~~l~lT~d~~~F~~~v~~~~is 219 (741)
--+.-|+.+|. =.|-||| +| .+-.. .++.. ..+++ =.=-|++.-...+.+.... +-+.=.
T Consensus 137 ~aa~L~QaftaE~m~r~gfgrRtF~~eeE~~---~~t~~~~~~~r~--------e~kvhv~rS~ktv~e~r~~-~~aQqn 204 (423)
T PF12044_consen 137 MAAYLWQAFTAEQMRRNGFGRRTFRFEEEWT---TDTLSQQGQMRS--------EAKVHVIRSDKTVAELRDL-NLAQQN 204 (423)
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEeeeecc---CCcccccccccc--------ceEEEEEeCCCcHHHHhhh-hhhhcC
Confidence 22223334332 2445555 23 22100 00000 00000 0001333333334443222 111112
Q ss_pred cCCCCCcchHHHHHHHHhccccccccC-CccEEEEEecCCCCCcCC-----CCCccceecCCCCcccccCCCCccccccC
Q psy12966 220 GNLDGPEGGFDAIMQAIVCKEEIGWRD-RARRLLVFSTDAEFHHAG-----DGKLGGIVKPNDGLCHMDRNGMYTHSTVQ 293 (741)
Q Consensus 220 gn~D~PE~~ldAl~qa~vC~~~igWR~-~a~rliv~~TDa~~H~ag-----Dg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~ 293 (741)
.+.....+.++-++.|+. +--+|.+ ...++++|+-|+-+.... -..|||= ++.=+| +++-.-..+
T Consensus 205 ~~~~~~~~L~~~~~~al~--~~~~~~~~~~~~~a~l~ldth~d~~~~~i~gHAALGgG----~~~~~L---AiFGSh~L~ 275 (423)
T PF12044_consen 205 PKAKDGGELFSIAAEALK--KYGGPQPGQKVKVAVLLLDTHYDPKSNLITGHAALGGG----GGDIKL---AIFGSHGLY 275 (423)
T ss_pred CCCCCchHHHHHHHHHHH--HcCCCCCCCeEEEEEEEEecCCCcccCccccccccccC----CCCeeE---EEecccccc
Confidence 233344567777777774 4456743 468888999887654332 1122221 000001 134444556
Q ss_pred CCC-CHHHHHHHHHhcCc
Q psy12966 294 DYP-SISQINMKVKQNSI 310 (741)
Q Consensus 294 DYP-Sv~ql~~~l~e~~I 310 (741)
-|| ++++|...+...--
T Consensus 276 swP~~~eev~~~f~D~t~ 293 (423)
T PF12044_consen 276 SWPSCLEEVVPCFLDCTR 293 (423)
T ss_pred cCcccHHHHHHHhcCCcc
Confidence 788 78899888877543
No 156
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=34.49 E-value=24 Score=34.00 Aligned_cols=25 Identities=28% Similarity=0.610 Sum_probs=19.1
Q ss_pred CCCCCeEEe------CceeeeCCCccCCcccc
Q psy12966 460 NCSGFGTFK------CGLCECDQSHFGRRCEC 485 (741)
Q Consensus 460 ~Csg~G~c~------cG~C~C~~G~~G~~CeC 485 (741)
-| -||.|. --.|.|..||.|.+||-
T Consensus 52 YC-lHG~C~yI~dl~~~~CrC~~GYtGeRCEh 82 (139)
T PHA03099 52 YC-LHGDCIHARDIDGMYCRCSHGYTGIRCQH 82 (139)
T ss_pred Ee-ECCEEEeeccCCCceeECCCCcccccccc
Confidence 46 467773 13699999999999984
No 157
>KOG0196|consensus
Probab=33.68 E-value=29 Score=42.59 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=38.8
Q ss_pred cccCCCceec--CCCCccC-CCCCceecCccccceeecCCCC----Cceeee-c-----------CceEecCCcee
Q psy12966 506 MECSGRGNCL--CNQKSLD-NIVNVIISHVIVTTECCVLDLN----TVGACV-A-----------SAIVKTAGLVQ 562 (741)
Q Consensus 506 ~~Csg~G~C~--cG~C~C~-~~~~~~~G~~~~~CecC~~~~g----G~G~C~-c-----------g~C~C~~G~~G 562 (741)
..|++-|+-. -|.|.|. +..+...|.. |+-||.... |...|. | ..|.|..||.-
T Consensus 246 m~C~~dGeWlvpiG~C~C~aGye~~~~~~~---C~aCp~G~yK~~~~~~~C~~CP~~S~s~~ega~~C~C~~gyyR 318 (996)
T KOG0196|consen 246 MYCSGDGEWLVPIGGCVCKAGYEEAENGKA---CQACPPGTYKASQGDSLCLPCPPNSHSSSEGATSCTCENGYYR 318 (996)
T ss_pred eEEcCCCcEEEEcCceeecCCCCcccCCCc---ceeCCCCcccCCCCCCCCCCCCCCCCCCCCCCCcccccCCccc
Confidence 4799988885 7999994 3323356777 988986533 566674 5 37999999876
No 158
>PF02723 NS3_envE: Non-structural protein NS3/Small envelope protein E; InterPro: IPR003873 This is a family of small nonstructural proteins, well conserved among Coronavirus strains. This protein is also found in Murine hepatitis virus as small envelope protein E.; GO: 0016020 membrane
Probab=32.90 E-value=61 Score=28.97 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q psy12966 694 IGAIVLIGLAFLCLWKILTSIH 715 (741)
Q Consensus 694 i~~ivliGl~lLliwK~~~~i~ 715 (741)
...++++++++|.+.|++...|
T Consensus 23 c~~~liv~~AlL~~IqLC~~cc 44 (82)
T PF02723_consen 23 CLVVLIVCIALLQLIQLCFQCC 44 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3457899999999999997654
No 159
>KOG1218|consensus
Probab=32.78 E-value=1.6e+02 Score=31.46 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=8.2
Q ss_pred eecCceEecCCcee
Q psy12966 549 CVASAIVKTAGLVQ 562 (741)
Q Consensus 549 C~cg~C~C~~G~~G 562 (741)
+..+.|.|.+||.|
T Consensus 159 ~~~~~c~c~~g~~g 172 (316)
T KOG1218|consen 159 CKNGICTCQPGFVG 172 (316)
T ss_pred CCCCceeccCCccc
Confidence 34556666666666
No 160
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=32.74 E-value=96 Score=30.09 Aligned_cols=30 Identities=33% Similarity=0.533 Sum_probs=12.4
Q ss_pred CCCCchhhHHHHH-HHHHHHHHHHHHHHHHH
Q psy12966 681 PPHVYILGLVLGV-IGAIVLIGLAFLCLWKI 710 (741)
Q Consensus 681 p~~~~~~~Ivlgv-i~~ivliGl~lLliwK~ 710 (741)
|+++.+|-..-|- +.++++|.++++++|+.
T Consensus 11 P~~vswwP~a~GWwll~~lll~~~~~~~~~~ 41 (146)
T PF14316_consen 11 PPPVSWWPLAPGWWLLLALLLLLLILLLWRL 41 (146)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554444332 22333333333444443
No 161
>KOG3607|consensus
Probab=32.63 E-value=26 Score=42.90 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=25.9
Q ss_pred CCCCCCCCeEEe-CceeeeCCCccCCcccccC
Q psy12966 457 NSPNCSGFGTFK-CGLCECDQSHFGRRCECDA 487 (741)
Q Consensus 457 ~s~~Csg~G~c~-cG~C~C~~G~~G~~CeC~~ 487 (741)
....|+|||.|. -..|.|.+||.+++|+-..
T Consensus 628 ~~~~C~g~GVCnn~~~ChC~~gwapp~C~~~~ 659 (716)
T KOG3607|consen 628 CPTTCNGHGVCNNELNCHCEPGWAPPFCFIFG 659 (716)
T ss_pred cccccCCCcccCCCcceeeCCCCCCCcccccc
Confidence 345699999996 4789999999999998643
No 162
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=32.29 E-value=80 Score=29.07 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=22.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy12966 684 VYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKE 726 (741)
Q Consensus 684 ~~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~kFekE 726 (741)
|-+++|.+.+++|.+++.++ -..-.+.-|||-+|..+|
T Consensus 60 PLilvil~s~v~G~Li~~~~-----~~~Ri~~lrr~~krlr~~ 97 (98)
T COG5416 60 PLILVILGAAVVGALIAMFA-----GIARILQLRREVKRLRAE 97 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHhhc
Confidence 34455555555555444333 333457789999988776
No 163
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=32.26 E-value=83 Score=30.99 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=10.1
Q ss_pred hhhhHHHHHHHHHHHH
Q psy12966 713 SIHDRREFAKFEKERM 728 (741)
Q Consensus 713 ~i~DrrE~~kFekE~~ 728 (741)
.-+-|+.-+.||+|-.
T Consensus 53 ssRKkKaaAAi~eedi 68 (189)
T PF05568_consen 53 SSRKKKAAAAIEEEDI 68 (189)
T ss_pred hhhhHHHHhhhhhhcc
Confidence 3444555688888863
No 164
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=32.16 E-value=73 Score=31.81 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=26.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy12966 684 VYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRRE 719 (741)
Q Consensus 684 ~~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE 719 (741)
+++...+.-+|..+||++|+..++||-+..+-|.|+
T Consensus 17 ~~~~~~~~~iinflIl~~lL~~fl~kpI~~~l~~R~ 52 (174)
T PRK07352 17 LNLNLLETNLINLAIVIGLLYYFGRGFLGKILEERR 52 (174)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444445556788889999999999998877666553
No 165
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.09 E-value=66 Score=30.80 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHhcc
Q psy12966 716 DRREFAKFEKERMLAK 731 (741)
Q Consensus 716 DrrE~~kFekE~~~ak 731 (741)
..++-+++|+|...++
T Consensus 23 ~~~~q~~l~~eL~~~k 38 (128)
T PF06295_consen 23 NQQKQAKLEQELEQAK 38 (128)
T ss_pred chhhHHHHHHHHHHHH
Confidence 3345566666665543
No 166
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=31.84 E-value=38 Score=29.54 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q psy12966 689 LVLGVIGA 696 (741)
Q Consensus 689 Ivlgvi~~ 696 (741)
|++++++|
T Consensus 2 ii~~~~~g 9 (75)
T PF14575_consen 2 IIASIIVG 9 (75)
T ss_dssp HHHHHHHH
T ss_pred EEehHHHH
Confidence 34444333
No 167
>KOG1217|consensus
Probab=31.67 E-value=99 Score=34.36 Aligned_cols=89 Identities=24% Similarity=0.411 Sum_probs=54.7
Q ss_pred CCCCeEEeC----ceeeeCCCccCCcc-cccCCCCCCcCcccCccCCCCccccCCCceec------CCCCccCCCCCcee
Q psy12966 461 CSGFGTFKC----GLCECDQSHFGRRC-ECDAESSQGITSTGCKADANSTMECSGRGNCL------CNQKSLDNIVNVII 529 (741)
Q Consensus 461 Csg~G~c~c----G~C~C~~G~~G~~C-eC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~------cG~C~C~~~~~~~~ 529 (741)
|..+|+|.- -.|.|.+||.|..| ++.. ...|...+. ...|...+.|. .-.|.|.. ++.
T Consensus 280 c~~~~~C~~~~~~~~C~C~~g~~g~~~~~~~~-------~~~C~~~~~-~~~c~~g~~C~~~~~~~~~~C~c~~---~~~ 348 (487)
T KOG1217|consen 280 CPNGGTCVNVPGSYRCTCPPGFTGRLCTECVD-------VDECSPRNA-GGPCANGGTCNTLGSFGGFRCACGP---GFT 348 (487)
T ss_pred cCCCCeeecCCCcceeeCCCCCCCCCCccccc-------ccccccccc-CCcCCCCcccccCCCCCCCCcCCCC---CCC
Confidence 666777754 36899999999999 3321 134543222 23466666662 33477743 478
Q ss_pred cCcccccee----ecCCC-CCceeeec-----CceEecCCceec
Q psy12966 530 SHVIVTTEC----CVLDL-NTVGACVA-----SAIVKTAGLVQR 563 (741)
Q Consensus 530 G~~~~~Cec----C~~~~-gG~G~C~c-----g~C~C~~G~~G~ 563 (741)
|.. |+. |.... ...+.|.. -.|.|..+|.|.
T Consensus 349 g~~---C~~~~~~C~~~~~~~~~~c~~~~~~~~~c~~~~~~~~~ 389 (487)
T KOG1217|consen 349 GRR---CEDSNDECASSPCCPGGTCVNETPGSYRCACPAGFAGK 389 (487)
T ss_pred CCc---cccCCccccCCccccCCEeccCCCCCeEecCCCccccC
Confidence 999 873 43322 24567764 268888888874
No 168
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=31.67 E-value=1e+02 Score=27.86 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=15.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHh
Q psy12966 707 LWKILTSIHDRREFAKFEKERML 729 (741)
Q Consensus 707 iwK~~~~i~DrrE~~kFekE~~~ 729 (741)
.|..+-.-+=++|-+|+++|.+.
T Consensus 19 ~y~~~k~~ka~~~~~kL~~en~q 41 (87)
T PF10883_consen 19 AYLWWKVKKAKKQNAKLQKENEQ 41 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677888888877654
No 169
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=31.46 E-value=40 Score=26.84 Aligned_cols=17 Identities=29% Similarity=0.712 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHHH
Q psy12966 686 ILGLVLGVIGAIVLIGL 702 (741)
Q Consensus 686 ~~~Ivlgvi~~ivliGl 702 (741)
++.|+||.+..++|||+
T Consensus 5 V~~iilg~~ll~~Ligi 21 (49)
T PF05624_consen 5 VVLIILGALLLLLLIGI 21 (49)
T ss_pred EeHHHHHHHHHHHHHHH
Confidence 34566666666666665
No 170
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=31.09 E-value=49 Score=29.51 Aligned_cols=10 Identities=30% Similarity=0.674 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q psy12966 718 REFAKFEKER 727 (741)
Q Consensus 718 rE~~kFekE~ 727 (741)
+||+|-.+++
T Consensus 28 ieYrk~~rqr 37 (81)
T PF00558_consen 28 IEYRKIKRQR 37 (81)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 5565555554
No 171
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=30.87 E-value=59 Score=31.97 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHH-HHH-HHHHHHHHHH
Q psy12966 686 ILGLVLGVIGAI-VLI-GLAFLCLWKI 710 (741)
Q Consensus 686 ~~~Ivlgvi~~i-vli-Gl~lLliwK~ 710 (741)
++.+++++|+|+ |+| |++-.++-|+
T Consensus 117 ~~~~i~~~i~g~ll~i~~giy~~~r~~ 143 (145)
T PF10661_consen 117 ISPTILLSIGGILLAICGGIYVVLRKV 143 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566655444 333 4444443443
No 172
>KOG1218|consensus
Probab=30.76 E-value=2.4e+02 Score=30.05 Aligned_cols=118 Identities=15% Similarity=0.311 Sum_probs=55.6
Q ss_pred ceeeeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceecCCCCccCCCCCceecCcccccee-ecCCCC-Cce
Q psy12966 470 GLCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLCNQKSLDNIVNVIISHVIVTTEC-CVLDLN-TVG 547 (741)
Q Consensus 470 G~C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~cG~C~C~~~~~~~~G~~~~~Cec-C~~~~g-G~G 547 (741)
+.|.+..+|.|..|........ ....|... ..|...+.+..-...|. ..+|.|.. |+- |+.... -.-
T Consensus 49 ~~~~~~~~~~~~~c~~~~~~~~--~~~~c~~~----~~c~~~~~~~~~~~~~~--~~~~~g~~---C~~~~~~~~~c~~~ 117 (316)
T KOG1218|consen 49 GECGLGYGFVGSVCRIECVCGN--AGGGCSQP----CRCKNGGTCVSSTGYCH--LNGYEGPQ---CESPCPCGDGCAEK 117 (316)
T ss_pred eeEecccccCCCccccccccCC--CCCcccCc----cccCCCCcccCCCCccc--CCCCCccc---ccCCCCcCCccccc
Confidence 5677888888888764321100 00111110 11333333333333341 12677888 776 443211 001
Q ss_pred eeec-C-ceEecCCceeccccc-cCCCCccccCcccc--CCccccccccccccccccccCCCCCccc
Q psy12966 548 ACVA-S-AIVKTAGLVQRVTVA-PLMTPVYLLREERC--ARARESVSAVCANVLKIAREDIPAGSAR 609 (741)
Q Consensus 548 ~C~c-g-~C~C~~G~~G~~~~~-~C~~~~~~~~~~~C--sg~G~C~cG~C~~~~~C~~~~~~gy~G~ 609 (741)
+|.- . .|.|..+|.+..... .-.... ....| ...-.+..+.|. | .+||.|.
T Consensus 118 ~C~~~~~~c~~~~~~~~~~C~~~~~~g~~---C~~~c~~~~~~~~~~~~c~----c----~~g~~g~ 173 (316)
T KOG1218|consen 118 TCANPRRECRCGGGYIGEQCGEENLVGLK---CQRDCQCTGGCDCKNGICT----C----QPGFVGV 173 (316)
T ss_pred ccCCCccceecCCcCccccccccCCCCCC---ccCCCCCccccCCCCCcee----c----cCCcccc
Confidence 3332 2 477777777622222 111111 11233 333445568999 9 8899998
No 173
>KOG4075|consensus
Probab=30.74 E-value=93 Score=31.32 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=33.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHhcccCCCCCCC
Q psy12966 683 HVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHD------RREFAKFEKERMLAKWDTKLNSL 739 (741)
Q Consensus 683 ~~~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~D------rrE~~kFekE~~~akw~~~~NPl 739 (741)
+.+-|-.++|+.+ +++||.++++|=..+.++. -+||+.-+.||++.. .-||+
T Consensus 95 ~~~ewKtv~g~~~--~f~Gl~~~v~l~~~v~vy~~~P~Tf~~Ewq~kq~erml~~---~~NPi 152 (167)
T KOG4075|consen 95 GSNEWKTVFGVAG--FFLGLTISVILFGKVRVYGPLPKTFNKEWQEKQLERMLDL---KINPI 152 (167)
T ss_pred CCCcccchhhHHH--HHHHHHHHHHHHHhheecCCCCcchhHHHHHHHHHHHHHc---ccCCc
Confidence 3456667777664 5566666666655555655 378998889988754 34664
No 174
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=30.60 E-value=97 Score=33.44 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy12966 696 AIVLIGLAFLCLWKILTS 713 (741)
Q Consensus 696 ~ivliGl~lLliwK~~~~ 713 (741)
++|++.+++++.|-+..-
T Consensus 237 ~L~~~~i~l~~gw~~y~~ 254 (262)
T PF11884_consen 237 ALVLANILLVLGWSLYRW 254 (262)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 446667777777744433
No 175
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=30.00 E-value=50 Score=35.90 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy12966 687 LGLVLGVIGAIVLIGLAFLCL 707 (741)
Q Consensus 687 ~~Ivlgvi~~ivliGl~lLli 707 (741)
++|.||++..|+|+|||+-.+
T Consensus 234 lAiALG~v~ll~l~Gii~~~~ 254 (281)
T PF12768_consen 234 LAIALGTVFLLVLIGIILAYI 254 (281)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777766543
No 176
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=29.89 E-value=52 Score=25.65 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12966 689 LVLGVIGAIVLIGLAFLCLWK 709 (741)
Q Consensus 689 Ivlgvi~~ivliGl~lLliwK 709 (741)
|..-++.+++.+||+.++++|
T Consensus 11 IlVF~lVglv~i~iva~~iYR 31 (43)
T PF08114_consen 11 ILVFCLVGLVGIGIVALFIYR 31 (43)
T ss_pred eeehHHHHHHHHHHHHHHHHH
Confidence 333345677788888888764
No 177
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=29.87 E-value=72 Score=24.17 Aligned_cols=23 Identities=39% Similarity=0.804 Sum_probs=14.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Q psy12966 684 VYILGLVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 684 ~~~~~Ivlgvi~~ivliGl~lLliw 708 (741)
|-..+||||.| -|-|+||..- +|
T Consensus 4 plL~GiVLGli-piTl~Glfva-Ay 26 (37)
T PRK00665 4 PLLCGIVLGLI-PVTLAGLFVA-AW 26 (37)
T ss_pred hhhhhHHHHhH-HHHHHHHHHH-HH
Confidence 34567888876 4667777653 35
No 178
>PRK10506 hypothetical protein; Provisional
Probab=29.67 E-value=1.1e+02 Score=30.37 Aligned_cols=33 Identities=3% Similarity=0.016 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy12966 696 AIVLIGLAFLCLWKILTSIHDRREFAKFEKERM 728 (741)
Q Consensus 696 ~ivliGl~lLliwK~~~~i~DrrE~~kFekE~~ 728 (741)
+++++||++.+.+-.+..+.++.+.+...++.+
T Consensus 19 vl~Ii~il~~~a~p~~~~~~~~~~~~~~~~~l~ 51 (162)
T PRK10506 19 VMTIVSILSAWGLYGWQRWQQRQRLWQTAQQLL 51 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666777777777766665543
No 179
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=29.42 E-value=71 Score=27.52 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLliw 708 (741)
.+.+++.|.+.|++|+++.+++.|
T Consensus 41 ~~~G~aiG~~~AlvLv~ip~~l~~ 64 (67)
T PRK13275 41 GIIGFAIGFLLALLLVVVPPLLYG 64 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888889999999888877
No 180
>PF15069 FAM163: FAM163 family
Probab=29.32 E-value=31 Score=33.77 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12966 687 LGLVLGVIGAIVLIGLAFLCLWKILTSI 714 (741)
Q Consensus 687 ~~Ivlgvi~~ivliGl~lLliwK~~~~i 714 (741)
..|.+||+|.++|+-||++|++=-|.+.
T Consensus 6 vVItGgILAtVILLcIIaVLCYCRLQYY 33 (143)
T PF15069_consen 6 VVITGGILATVILLCIIAVLCYCRLQYY 33 (143)
T ss_pred EEEechHHHHHHHHHHHHHHHHHhhHHH
Confidence 4578888888888888888877444443
No 181
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=29.26 E-value=3.3e+02 Score=27.46 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=47.2
Q ss_pred EEEEEecCCCCC-cCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecc-hhhhHHHH
Q psy12966 250 RLLVFSTDAEFH-HAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAE-QIGVYERL 327 (741)
Q Consensus 250 rliv~~TDa~~H-~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~-~~~~Y~~l 327 (741)
|++||=-|+.+- .+.+..+.+.++|-|+.--.-. .-......=||-+.++.+.|+++|+... .+|+. ..+..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~pGv~elL~~Lk~~G~~l~-I~Sn~~~~~~~~~~ 79 (174)
T TIGR01685 3 RVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIII--DKSGTEVTLIKEVRDVLQTLKDAGTYLA-TASWNDVPEWAYEI 79 (174)
T ss_pred cEEEEeCCCCCcCcccccccCCCceeccCCCCeEE--eCCCCEEEEcccHHHHHHHHHHCCCEEE-EEeCCCChHHHHHH
Confidence 789999999873 3467777777777765221100 0111223448999999999999988764 55544 44443333
No 182
>PHA02639 EEV host range protein; Provisional
Probab=29.17 E-value=35 Score=37.33 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=21.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Q psy12966 684 VYILGLVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 684 ~~~~~Ivlgvi~~ivliGl~lLliw 708 (741)
..+++|+|+||..|.++|+++|++-
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (295)
T PHA02639 256 IFTVIILLSIISFMFILGVLSLLCS 280 (295)
T ss_pred EEEhhHHHHHHHHHHHHHHHHHeee
Confidence 4567789999999999999998754
No 183
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=29.16 E-value=78 Score=24.02 Aligned_cols=23 Identities=43% Similarity=0.795 Sum_probs=14.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Q psy12966 684 VYILGLVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 684 ~~~~~Ivlgvi~~ivliGl~lLliw 708 (741)
|-..+||||.| -|-|+||..- +|
T Consensus 4 ~lL~GiVLGli-pvTl~Glfva-Ay 26 (37)
T CHL00008 4 VLLFGIVLGLI-PITLAGLFVT-AY 26 (37)
T ss_pred hhhhhHHHHhH-HHHHHHHHHH-HH
Confidence 34567888876 4667776653 35
No 184
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=28.99 E-value=87 Score=31.25 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy12966 687 LGLVLGVIGAIVLIGLAFLCLWKILTSIHDRRE 719 (741)
Q Consensus 687 ~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE 719 (741)
..+++-+|..+||++++--++||-+..+-|.|+
T Consensus 17 ~~~~~~~i~Flil~~iL~~~~~kpi~~~l~~R~ 49 (173)
T PRK13460 17 GLVVWTLVTFLVVVLVLKKFAWDVILKALDERA 49 (173)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345556778888999998999997766666553
No 185
>COG3462 Predicted membrane protein [Function unknown]
Probab=28.72 E-value=61 Score=30.46 Aligned_cols=48 Identities=21% Similarity=0.325 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-----HHHhcccCCC
Q psy12966 687 LGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEK-----ERMLAKWDTK 735 (741)
Q Consensus 687 ~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~kFek-----E~~~akw~~~ 735 (741)
+.++..|+++|+||-|++ .+..++-.+|+--.+..+|+ |..+.++.++
T Consensus 49 m~lImpI~~~vvli~lvv-fm~~~~g~~r~~~~~d~~e~~sRA~eIlkER~AkG 101 (117)
T COG3462 49 MWLIMPIFWAVVLIFLVV-FMFYILGAVRRGSDDDDAERGSRAEEILKERYAKG 101 (117)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHhcccchhcccccccHHHHHHHHHHhcC
Confidence 447777888888775554 45778887777666766666 4444455444
No 186
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=28.60 E-value=20 Score=32.95 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy12966 687 LGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAK 722 (741)
Q Consensus 687 ~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~k 722 (741)
+.|++.++.++++|-+++.+|+ .++.++||+.++.
T Consensus 61 ~~iili~lls~v~IlVily~Iy-YFVILRer~~~~~ 95 (101)
T PF06024_consen 61 GNIILISLLSFVCILVILYAIY-YFVILRERQKSIR 95 (101)
T ss_pred ccchHHHHHHHHHHHHHHhhhe-EEEEEeccccccc
Confidence 3344444445555545554444 6777888887654
No 187
>smart00181 EGF Epidermal growth factor-like domain.
Probab=28.52 E-value=32 Score=24.40 Aligned_cols=24 Identities=38% Similarity=0.665 Sum_probs=16.3
Q ss_pred CCCCCeEEeC----ceeeeCCCccC-Cccc
Q psy12966 460 NCSGFGTFKC----GLCECDQSHFG-RRCE 484 (741)
Q Consensus 460 ~Csg~G~c~c----G~C~C~~G~~G-~~Ce 484 (741)
.|..+ .|.- -.|.|.+||.| ..|+
T Consensus 7 ~C~~~-~C~~~~~~~~C~C~~g~~g~~~C~ 35 (35)
T smart00181 7 PCSNG-TCINTPGSYTCSCPPGYTGDKRCE 35 (35)
T ss_pred CCCCC-EEECCCCCeEeECCCCCccCCccC
Confidence 35544 5542 26899999999 7774
No 188
>KOG3512|consensus
Probab=28.04 E-value=1.2e+02 Score=35.19 Aligned_cols=14 Identities=29% Similarity=1.016 Sum_probs=11.9
Q ss_pred eeeeCCCccCCccc
Q psy12966 471 LCECDQSHFGRRCE 484 (741)
Q Consensus 471 ~C~C~~G~~G~~Ce 484 (741)
+|.|..+-.|+.|+
T Consensus 296 tCdC~HNTaGPdCg 309 (592)
T KOG3512|consen 296 TCDCEHNTAGPDCG 309 (592)
T ss_pred EEecccCCCCCCcc
Confidence 57888888999987
No 189
>PHA02831 EEV host range protein; Provisional
Probab=27.92 E-value=49 Score=35.81 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=21.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHH
Q psy12966 683 HVYILGLVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 683 ~~~~~~Ivlgvi~~ivliGl~lLliw 708 (741)
...+++|+|+||..|..+||++|++-
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (268)
T PHA02831 229 NIITIIILLSIICFIFVLGLIALFLS 254 (268)
T ss_pred ceEeehhHHHHHHHHHHHHHHHHhhc
Confidence 45567799999999999999988753
No 190
>PF09049 SNN_transmemb: Stannin transmembrane; InterPro: IPR015135 This region consists of a single highly hydrophobic transmembrane helix that transverses the lipid bilayer at a 20 degree angle with respect to the membrane normal. It contains a conserved cysteine residue (Cys32) that, together with Cys34 found in the stannin unstructured linker domain, constitutes the putative trimethyltin-binding site that resides at the end of the transmembrane domain close to the lipid/solvent interface []. ; PDB: 1ZZA_A.
Probab=27.77 E-value=92 Score=22.65 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12966 691 LGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 691 lgvi~~ivliGl~lLliw 708 (741)
+.|++++..+|.+++.+|
T Consensus 16 ~viliavaalg~licgcw 33 (33)
T PF09049_consen 16 IVILIAVAALGALICGCW 33 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhheecC
Confidence 334556777787777777
No 191
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=27.51 E-value=20 Score=41.32 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFA 721 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~ 721 (741)
..++++++|+|++++|.|+++++|=++.--.-||.++
T Consensus 350 ~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 350 RGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp -------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHhheeeeehhcccccc
Confidence 3445666666777777777777775555555555555
No 192
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=27.31 E-value=90 Score=34.35 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12966 694 IGAIVLIGLAFLCLWKIL 711 (741)
Q Consensus 694 i~~ivliGl~lLliwK~~ 711 (741)
+++||+|-|++|+|+-+|
T Consensus 262 iiaIliIVLIMvIIYLIL 279 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLIL 279 (299)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666656555555443
No 193
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=27.20 E-value=1.6e+02 Score=26.87 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=46.8
Q ss_pred hHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHh
Q psy12966 228 GFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQ 307 (741)
Q Consensus 228 ~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e 307 (741)
|....+.++ |.+--+++|++.|++.+. ..+|.....+
T Consensus 20 G~~~v~kai--------~~gkaklViiA~D~~~~~-----------------------------------~~~i~~~c~~ 56 (99)
T PRK01018 20 GSKRTIKAI--------KLGKAKLVIVASNCPKDI-----------------------------------KEDIEYYAKL 56 (99)
T ss_pred cHHHHHHHH--------HcCCceEEEEeCCCCHHH-----------------------------------HHHHHHHHHH
Confidence 355556665 345678999999987432 4567777778
Q ss_pred cCccEEEEE-ecchhhhHHHHhhccc----CceeeeccCCcchHHHH
Q psy12966 308 NSINLIFAV-TAEQIGVYERLKTHIE----GSSSGTLTNDSSNVVDL 349 (741)
Q Consensus 308 ~~I~~Ifav-t~~~~~~Y~~l~~~i~----gs~vg~L~~dSsNiv~l 349 (741)
++|..++-+ +. ++|...++ -+.++++...-++++++
T Consensus 57 ~~Ip~~~~~~tk------~eLG~a~Gk~~~~~~vaI~D~G~a~~~~~ 97 (99)
T PRK01018 57 SGIPVYEYEGSS------VELGTLCGKPFTVSALAIVDPGESDILEL 97 (99)
T ss_pred cCCCEEEECCCH------HHHHHHhCCCCCEEEEEEecCCHHHHHHh
Confidence 887655432 33 44555554 25777777777777654
No 194
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=27.14 E-value=1.5e+02 Score=25.99 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy12966 689 LVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEK 725 (741)
Q Consensus 689 Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~kFek 725 (741)
|-..|++++++. ++.-++||+.+...-|+-|+.|=+
T Consensus 17 l~~~i~~a~~ls-~~~~~~~kf~v~~pRKk~YadFYk 52 (73)
T PF02937_consen 17 LKRHIVVAFVLS-LGVAAAYKFGVAEPRKKAYADFYK 52 (73)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344455555544 444456999999999999999854
No 195
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=27.02 E-value=2.4e+02 Score=26.61 Aligned_cols=99 Identities=13% Similarity=0.280 Sum_probs=57.0
Q ss_pred HHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCC
Q psy12966 207 SRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGM 286 (741)
Q Consensus 207 ~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~ 286 (741)
.++.+.|+...=+|++- -|....+.|+ |.+.-+++|++.|+++..
T Consensus 12 ~ki~~lL~la~ragkl~---~G~~~v~kai--------kkgka~LVilA~D~s~~~------------------------ 56 (117)
T TIGR03677 12 NKALEAVEKARETGKIK---KGTNEVTKAV--------ERGIAKLVVIAEDVEPPE------------------------ 56 (117)
T ss_pred HHHHHHHHHHHHcCCEe---EcHHHHHHHH--------HcCCccEEEEeCCCCcHH------------------------
Confidence 34444454444444422 2466667676 346688999999997431
Q ss_pred ccccccCCCCCHHHHHHHHHhcCccEEEEEecchhhhHHHHhhccc----CceeeeccC-CcchHHHHHHHHhhh
Q psy12966 287 YTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIE----GSSSGTLTN-DSSNVVDLVKDQYNK 356 (741)
Q Consensus 287 Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~~~~~Y~~l~~~i~----gs~vg~L~~-dSsNiv~lI~~aY~~ 356 (741)
.+..+.....+++|..+|.-+.. +|...++ -+.++++.. .+.-+++-|.+..+.
T Consensus 57 ----------~~~~i~~lc~~~~Ip~~~~~sk~------eLG~a~Gk~~~~svvaI~d~g~a~~~~~~~~~~i~~ 115 (117)
T TIGR03677 57 ----------IVAHLPALCEEKGIPYVYVKKKE------DLGAAAGLEVGAASAAIVDEGKAEELLKEIIEKVEA 115 (117)
T ss_pred ----------HHHHHHHHHHHcCCCEEEeCCHH------HHHHHhCCCCCeEEEEEEchhhhHHHHHHHHHHHHh
Confidence 13556677778888866655443 3444443 456776643 344556655555544
No 196
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=26.93 E-value=94 Score=31.00 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy12966 687 LGLVLGVIGAIVLIGLAFLCLWKILTSIHDRRE 719 (741)
Q Consensus 687 ~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE 719 (741)
+-++.-+|..+||++|+..++||-+..+-|.|+
T Consensus 23 ~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~ 55 (167)
T PRK08475 23 YDIIERTINFLIFVGILWYFAAKPLKNFYKSRI 55 (167)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555788889999999999997776666654
No 197
>KOG3415|consensus
Probab=26.80 E-value=1.1e+02 Score=29.04 Aligned_cols=41 Identities=29% Similarity=0.457 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHH-HHH---HHHHHHHHHHhhhhhHHHHHHHHHH
Q psy12966 686 ILGLVLGVIGAIV-LIG---LAFLCLWKILTSIHDRREFAKFEKE 726 (741)
Q Consensus 686 ~~~Ivlgvi~~iv-liG---l~lLliwK~~~~i~DrrE~~kFekE 726 (741)
+.++++|+|=||+ |.| |++.+..-.-+..+....|.|-.+|
T Consensus 51 Vi~l~lGviwGi~pL~G~l~iv~f~~issgIvy~y~~~~~~VDEe 95 (129)
T KOG3415|consen 51 VIGLILGVIWGIIPLVGFLGIVLFLGISSGIVYLYYANFLKVDEE 95 (129)
T ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHhhhhHHHHHHHHHHhcCHH
Confidence 4567788776666 444 4444444333334443444443333
No 198
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=26.78 E-value=95 Score=27.70 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=34.0
Q ss_pred eecceeEEEEEe-------eCccEEEEEEEeccCCCcceeEEeecCCCC--hH-HhHHHHHHHHHHHHHHH
Q psy12966 93 QISPQHVSLKLR-------INEAYRMVVDYAQAEDYPVDLYYLMDLSNS--MR-DDKDRLSALGDQLSASM 153 (741)
Q Consensus 93 qi~Pq~v~~~LR-------~G~~~~~~~~~~~~~~~pvDly~LmDlS~S--M~-ddl~~lk~l~~~l~~~l 153 (741)
...|..+.++|+ ......+.|.|+-+.+|| +-.=.+.+... +. .++..|.+...++++++
T Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP-~~~P~i~l~~~~~~~~~~~~~l~~~l~~~~~~~ 95 (113)
T PF05773_consen 26 SKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYP-ESPPKISLESPKNSRNEQIEKLNKELEQIAEEN 95 (113)
T ss_dssp SSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTT-SS--EEEEEEESSSHCHHHHHHHHHHHHHHHHS
T ss_pred cCCCCceeeeecccccccccccceeEEEEEeCCCcCC-CcCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 345666777773 356678889999999999 43322333333 33 55666655555555443
No 199
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=26.69 E-value=64 Score=26.23 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12966 689 LVLGVIGAIVLIGLAFLCLWKIL 711 (741)
Q Consensus 689 Ivlgvi~~ivliGl~lLliwK~~ 711 (741)
+++.+|.-++++||+.+++|-++
T Consensus 2 ~~~~iV~i~iv~~lLg~~I~~~~ 24 (50)
T PF12606_consen 2 IAFLIVSIFIVMGLLGLSICTTL 24 (50)
T ss_pred eehHHHHHHHHHHHHHHHHHHHh
No 200
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.44 E-value=57 Score=31.06 Aligned_cols=10 Identities=30% Similarity=0.464 Sum_probs=6.3
Q ss_pred hhhhHHHHHH
Q psy12966 713 SIHDRREFAK 722 (741)
Q Consensus 713 ~i~DrrE~~k 722 (741)
.+|-||.-+|
T Consensus 20 ~~~~rRR~r~ 29 (130)
T PF12273_consen 20 YCHNRRRRRR 29 (130)
T ss_pred HHHHHHHhhc
Confidence 3566776666
No 201
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.29 E-value=61 Score=31.06 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=6.0
Q ss_pred HHHHHHHHHH
Q psy12966 698 VLIGLAFLCL 707 (741)
Q Consensus 698 vliGl~lLli 707 (741)
|++|+|++++
T Consensus 73 v~aGvIg~Il 82 (122)
T PF01102_consen 73 VMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4566766554
No 202
>PF15106 TMEM156: TMEM156 protein family
Probab=26.09 E-value=1e+02 Score=32.19 Aligned_cols=64 Identities=20% Similarity=0.406 Sum_probs=35.5
Q ss_pred CCceeec-CCCcEEEEEEEEcCCCcEEEEEeccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy12966 646 NLCVYFD-EDECKFEYVYWYDAQGKIHLRAQQERECPPHVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFE 724 (741)
Q Consensus 646 ~~C~~~~-~d~C~~~f~y~~~~~~~~~i~v~~~~~Cp~~~~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~kFe 724 (741)
..|.... -++|.-....-. ..| +...|--. |..-|++.+|+|=|++|+|.|++.. .|+.+|++
T Consensus 145 htC~~me~~NnC~~ISL~Le-------mdv-kn~~CsmK-----ITWYvLVllVfiflii~iI~KIle~---hrrvqkwq 208 (226)
T PF15106_consen 145 HTCRIMEYLNNCTHISLHLE-------MDV-KNSTCSMK-----ITWYVLVLLVFIFLIILIIYKILEG---HRRVQKWQ 208 (226)
T ss_pred cchhhhcCCCccEEEEEEEE-------ecc-cCceeehh-----hHHHHHHHHHHHHHHHHHHHHHHHh---hhhHhHHh
Confidence 3476653 477875553211 111 12356443 4444444556666778888998754 46666666
Q ss_pred H
Q psy12966 725 K 725 (741)
Q Consensus 725 k 725 (741)
+
T Consensus 209 ~ 209 (226)
T PF15106_consen 209 S 209 (226)
T ss_pred h
Confidence 5
No 203
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=25.99 E-value=13 Score=33.90 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHH-HHHHHHH
Q psy12966 688 GLVLGVIGAIVLIG-LAFLCLW 708 (741)
Q Consensus 688 ~Ivlgvi~~ivliG-l~lLliw 708 (741)
+|+.++|++++++| |+.+|+|
T Consensus 67 aiagi~vg~~~~v~~lv~~l~w 88 (96)
T PTZ00382 67 AIAGISVAVVAVVGGLVGFLCW 88 (96)
T ss_pred cEEEEEeehhhHHHHHHHHHhh
Confidence 34444454555553 3445555
No 204
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=25.85 E-value=3.7e+02 Score=28.88 Aligned_cols=54 Identities=15% Similarity=0.082 Sum_probs=29.7
Q ss_pred CCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCC
Q psy12966 202 LSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEF 260 (741)
Q Consensus 202 lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~ 260 (741)
+..=.+.+.+.+..+..+|--..-+---.|+..|.- -. ..+...+||++||...
T Consensus 115 i~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~----~~-~~~~Y~VLLIiTDG~i 168 (254)
T cd01459 115 FEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKA----SN-SQSKYHILLIITDGEI 168 (254)
T ss_pred HHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHH----hc-CCCceEEEEEECCCCc
Confidence 344456677788888887654333222222222221 11 1124789999999874
No 205
>PRK11677 hypothetical protein; Provisional
Probab=25.82 E-value=1.1e+02 Score=29.81 Aligned_cols=14 Identities=21% Similarity=0.121 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhcc
Q psy12966 718 REFAKFEKERMLAK 731 (741)
Q Consensus 718 rE~~kFekE~~~ak 731 (741)
++-++.|+|..++|
T Consensus 29 ~~q~~le~eLe~~k 42 (134)
T PRK11677 29 RQQQALQYELEKNK 42 (134)
T ss_pred hHHHHHHHHHHHHH
Confidence 56666777766554
No 206
>PTZ00046 rifin; Provisional
Probab=25.61 E-value=92 Score=35.08 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12966 687 LGLVLGVIGAIVLIGLAFLCLWKIL 711 (741)
Q Consensus 687 ~~Ivlgvi~~ivliGl~lLliwK~~ 711 (741)
-+|+.+|| |||+|=|+.++|+-+|
T Consensus 315 taIiaSii-AIvVIVLIMvIIYLIL 338 (358)
T PTZ00046 315 TAIIASIV-AIVVIVLIMVIIYLIL 338 (358)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34565554 6777777777777554
No 207
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=25.59 E-value=99 Score=22.30 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy12966 688 GLVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 688 ~Ivlgvi~~ivliGl~lLliw 708 (741)
.++.|++..++|+|-+++.++
T Consensus 4 ~vi~G~ilv~lLlgYLvyALi 24 (29)
T PRK14748 4 GVITGVLLVFLLLGYLVYALI 24 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 355566656666665555443
No 208
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=25.55 E-value=17 Score=36.89 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q psy12966 686 ILGLVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 686 ~~~Ivlgvi~~ivliGl~lLliw 708 (741)
.++|+|.++.+++++++++++.|
T Consensus 159 ~laI~lPvvv~~~~~~~~~~~~~ 181 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIMYGFFFW 181 (189)
T ss_pred eEEEEccHHHHHHHHHHHhhhee
Confidence 78899999888888888887776
No 209
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=25.22 E-value=36 Score=37.12 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=19.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLCLWK 709 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLliwK 709 (741)
-+.+||+.+++++|||.|+.-+|+|
T Consensus 272 ~vPIaVG~~La~lvlivLiaYli~R 296 (306)
T PF01299_consen 272 LVPIAVGAALAGLVLIVLIAYLIGR 296 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHhheeEe
Confidence 3556777778889999988888763
No 210
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=25.08 E-value=96 Score=34.84 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12966 687 LGLVLGVIGAIVLIGLAFLCLWKIL 711 (741)
Q Consensus 687 ~~Ivlgvi~~ivliGl~lLliwK~~ 711 (741)
-+|+.+|| |||+|-|++|+|+-+|
T Consensus 310 t~IiaSiI-AIvvIVLIMvIIYLIL 333 (353)
T TIGR01477 310 TPIIASII-AILIIVLIMVIIYLIL 333 (353)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44666554 6777777777776444
No 211
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=24.86 E-value=30 Score=35.85 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy12966 687 LGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAK 722 (741)
Q Consensus 687 ~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~k 722 (741)
+.|+|.++|+++||-++++.++ .+|-||-|++
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y----~~~~Rrs~~~ 132 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGY----CCHQRRSWSK 132 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHH----HhhhhccCCc
Confidence 4455555555555544444433 5668887754
No 212
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=24.80 E-value=1e+02 Score=30.63 Aligned_cols=31 Identities=10% Similarity=0.056 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy12966 689 LVLGVIGAIVLIGLAFLCLWKILTSIHDRRE 719 (741)
Q Consensus 689 Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE 719 (741)
++.-+|..+||++|+-..+||-++-+-|.|+
T Consensus 7 ~fwq~I~FlIll~ll~kfawkPI~~~LeeR~ 37 (154)
T PRK06568 7 SFWLAVSFVIFVYLIYRPAKKAILNSLDAKI 37 (154)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455566778888899999999998888775
No 213
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=24.75 E-value=3.2e+02 Score=21.80 Aligned_cols=15 Identities=20% Similarity=0.623 Sum_probs=7.0
Q ss_pred chhhHHHHHHHHHHHHHH
Q psy12966 685 YILGLVLGVIGAIVLIGL 702 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl 702 (741)
.++..+++|+ +++|+
T Consensus 3 ~wlt~iFsvv---Iil~I 17 (49)
T PF11044_consen 3 TWLTTIFSVV---IILGI 17 (49)
T ss_pred hHHHHHHHHH---HHHHH
Confidence 3445555543 44444
No 214
>PRK01741 cell division protein ZipA; Provisional
Probab=24.64 E-value=56 Score=36.32 Aligned_cols=22 Identities=14% Similarity=0.449 Sum_probs=16.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHH
Q psy12966 684 VYILGLVLGVIGAIVLIGLAFL 705 (741)
Q Consensus 684 ~~~~~Ivlgvi~~ivliGl~lL 705 (741)
-|++.||||+|+.|+|+|--|+
T Consensus 3 Ln~iliILg~lal~~Lv~hgiW 24 (332)
T PRK01741 3 LNTILIILGILALVALVAHGIW 24 (332)
T ss_pred ceehHHHHHHHHHHHHHHhhhh
Confidence 3678888888887777776664
No 215
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=24.54 E-value=89 Score=22.10 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12966 692 GVIGAIVLIGLAFLCLWK 709 (741)
Q Consensus 692 gvi~~ivliGl~lLliwK 709 (741)
|..++.+.+||+.|+.||
T Consensus 5 GST~~Ll~~~l~~l~~~r 22 (26)
T TIGR03778 5 GSTLALLGLGLLGLLGLR 22 (26)
T ss_pred hhHHHHHHHHHHHHHHHh
Confidence 334556677777777774
No 216
>PF14828 Amnionless: Amnionless
Probab=24.51 E-value=15 Score=42.33 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH--------HHHhhhhhHHHHH
Q psy12966 686 ILGLVLGVIGAIVLIGLAFLCLW--------KILTSIHDRREFA 721 (741)
Q Consensus 686 ~~~Ivlgvi~~ivliGl~lLliw--------K~~~~i~DrrE~~ 721 (741)
++++|+++++.|+|+++++|+.. ++...+|++++.+
T Consensus 340 v~~~vl~~Lllv~ll~~~~ll~~~~~~~~l~~~~~w~r~~~~~~ 383 (437)
T PF14828_consen 340 VVGIVLGCLLLVALLFGVILLYRLPRNPSLPRIPRWRRDERRVR 383 (437)
T ss_pred eeeehHHHHHHHHHHHHhheEEeccccccccccceeeecccccc
Confidence 45555555555555555444322 3455667776544
No 217
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=24.47 E-value=1.2e+02 Score=28.15 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHHH
Q psy12966 697 IVLIGLAFLCLWKIL-------TSIHDRREFAKFEKER 727 (741)
Q Consensus 697 ivliGl~lLliwK~~-------~~i~DrrE~~kFekE~ 727 (741)
+++++|++++.+.++ .+.+-+++.+..++|.
T Consensus 6 ~vll~ll~~l~y~l~~g~~G~~~~~~l~~q~~~~~~e~ 43 (105)
T PRK00888 6 LLLLALLVWLQYSLWFGKNGILDYWRVNDQVAAQQQTN 43 (105)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 344455555555553 3444455555444443
No 218
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.28 E-value=2.6e+02 Score=23.08 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q psy12966 687 LGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKERML 729 (741)
Q Consensus 687 ~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~kFekE~~~ 729 (741)
.+.++|++.|.+ +++.-.+-+|.-. -+-+||.++.|+|.++
T Consensus 26 ~~f~~G~llg~l-~~~~~~~~~r~~~-~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 26 IAFLLGALLGWL-LSLPSRLRLRRRI-RRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 334555544443 3333333344333 4456677777777654
No 219
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=24.21 E-value=10 Score=37.57 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q psy12966 686 ILGLVLGVIGAIVLIGLAFLC 706 (741)
Q Consensus 686 ~~~Ivlgvi~~ivliGl~lLl 706 (741)
+.++|.||-++|||+ +++|+
T Consensus 51 VIGvVVGVGg~ill~-il~lv 70 (154)
T PF04478_consen 51 VIGVVVGVGGPILLG-ILALV 70 (154)
T ss_pred EEEEEecccHHHHHH-HHHhh
Confidence 566777766555554 44433
No 220
>COG5547 Small integral membrane protein [Function unknown]
Probab=24.13 E-value=1.2e+02 Score=25.52 Aligned_cols=26 Identities=19% Similarity=0.524 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12966 687 LGLVLGVIGAIVLIGLAFLCLWKILT 712 (741)
Q Consensus 687 ~~Ivlgvi~~ivliGl~lLliwK~~~ 712 (741)
+.|+.|+++.++.|=++.+-.||-+.
T Consensus 9 ypIIgglvglliAili~t~GfwKtil 34 (62)
T COG5547 9 YPIIGGLVGLLIAILILTFGFWKTIL 34 (62)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55888888777777777777787554
No 221
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=24.12 E-value=3.2e+02 Score=30.03 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=63.9
Q ss_pred ccCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcce
Q psy12966 117 QAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGY 196 (741)
Q Consensus 117 ~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f 196 (741)
.....+.++.++.|.++||..++ ++.........+..+-....+.+-.|... .
T Consensus 32 ~~~~~~~~~~~~~~~~~s~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------------------------~ 84 (399)
T COG2304 32 LDLLVPANLTLAIDTSGSMTGAL--LELAKSAAIELVNGLNPGDLLSIVTFAGS-------------------------A 84 (399)
T ss_pred cccccCcceEEEeccCCCccchh--HHHHHHHHHHHhcccCCCCceEEEEecCC-------------------------c
Confidence 34566899999999999999988 44333333334444444555555433321 0
Q ss_pred eeeec--CCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecC
Q psy12966 197 HNVMS--LSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTD 257 (741)
Q Consensus 197 ~~~l~--lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TD 257 (741)
.-.++ .-.+.+.+..++......++.+..+.++.-+.+-+. .....|+ -..+.+.||
T Consensus 85 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~td 143 (399)
T COG2304 85 DVLIPPTGATNKESITAAIDQSLQAGGATAVEASLSLAVELAA-KALPRGT---LNRILLLTD 143 (399)
T ss_pred ceecCcccccCHHHHHHHHhhhhccccccHHHHHHHHHHHHhh-hcCCccc---eeeEeeecc
Confidence 11122 336778888888885555666666666654444431 0122343 446666777
No 222
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=24.11 E-value=1.2e+02 Score=29.86 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=23.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRRE 719 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE 719 (741)
++..+++-+|..+||+.|+--++||=+.-+-|.|+
T Consensus 7 ~~~~~~~~~i~Flil~~ll~~~l~~pi~~~l~~R~ 41 (164)
T PRK14471 7 DFGLFFWQTILFLILLLLLAKFAWKPILGAVKERE 41 (164)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455555677777787787788887776666654
No 223
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=24.10 E-value=1.2e+02 Score=23.57 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12966 689 LVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 689 Ivlgvi~~ivliGl~lLliw 708 (741)
.+.|.+++++.||++-|..+
T Consensus 11 WlVgtv~G~~vi~lvglFfY 30 (40)
T PF01788_consen 11 WLVGTVAGIAVIGLVGLFFY 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhee
Confidence 34677788888888877654
No 224
>PRK07714 hypothetical protein; Provisional
Probab=23.91 E-value=2.8e+02 Score=25.17 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=19.4
Q ss_pred hHHHHHHHHhccccccccCCccEEEEEecCCCCCc
Q psy12966 228 GFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHH 262 (741)
Q Consensus 228 ~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~ 262 (741)
|++..+.|+ +.+.-+++|++.|++.+.
T Consensus 22 G~~~v~~al--------~~g~~~lViiA~D~s~~~ 48 (100)
T PRK07714 22 GEELVLKEV--------RSGKAKLVLLSEDASVNT 48 (100)
T ss_pred cHHHHHHHH--------HhCCceEEEEeCCCCHHH
Confidence 466667676 235568999999999654
No 225
>PF15149 CATSPERB: Cation channel sperm-associated protein subunit beta protein family
Probab=23.84 E-value=1.6e+02 Score=34.50 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=32.1
Q ss_pred CcEEEEEeccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy12966 668 GKIHLRAQQERECPPHVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKER 727 (741)
Q Consensus 668 ~~~~i~v~~~~~Cp~~~~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~kFekE~ 727 (741)
.+++|+|.+.+- |....-++.+..||+|-|||+++..--+-.+|- |..|++-.
T Consensus 477 ~EFqIYVDe~PL----pfPg~~LIa~~tAvvlGglif~~f~~ql~~ih~---~~~~~~~~ 529 (540)
T PF15149_consen 477 EEFQIYVDEVPL----PFPGHTLIAVATAVVLGGLIFMAFMFQLRNIHP---WDAFKKWI 529 (540)
T ss_pred hheEEEeccCCC----CCCchhHHHHHHHHHHHHHHHHHHHHHHhccCc---HHHHHHHH
Confidence 447889886533 333444555667888889888775544444555 55554443
No 226
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=23.82 E-value=2e+02 Score=24.88 Aligned_cols=31 Identities=13% Similarity=0.015 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy12966 698 VLIGLAFLCLWKILTSIHDRREFAKFEKERM 728 (741)
Q Consensus 698 vliGl~lLliwK~~~~i~DrrE~~kFekE~~ 728 (741)
+++.+++.++|--...-+.+++.++-++|..
T Consensus 11 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 41 (85)
T TIGR02209 11 AILVSAISVVSAQHQTRQLNNELQKLQLEID 41 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444544445566677777776664
No 227
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=23.67 E-value=1.2e+02 Score=30.62 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=12.4
Q ss_pred HHHHHHHHHHH----HH-HHhhhhhHHHH
Q psy12966 697 IVLIGLAFLCL----WK-ILTSIHDRREF 720 (741)
Q Consensus 697 ivliGl~lLli----wK-~~~~i~DrrE~ 720 (741)
+|.++|+++++ || +.-+|.+|++.
T Consensus 38 lI~F~iL~~ll~k~l~~PI~~~l~~R~~~ 66 (181)
T PRK13454 38 LVTLVAIYFVLTRVALPRIGAVLAERQGT 66 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 44 55666666654
No 228
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=23.65 E-value=4.4e+02 Score=23.16 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=30.3
Q ss_pred eEEEEEeeCc------cEEEEEEEeccCCCccee--EEeecCCCChHHhHHHHHHHHHHHH
Q psy12966 98 HVSLKLRINE------AYRMVVDYAQAEDYPVDL--YYLMDLSNSMRDDKDRLSALGDQLS 150 (741)
Q Consensus 98 ~v~~~LR~G~------~~~~~~~~~~~~~~pvDl--y~LmDlS~SM~ddl~~lk~l~~~l~ 150 (741)
.+.++|.+.. ...+.+.|+-+.+||-.. +++....+=-..++..|.+....++
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~~~~l~~~~~~~l~~~l~~~~ 84 (107)
T smart00591 24 EITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLNSEGLSDEQLAELLKKLEEIA 84 (107)
T ss_pred EEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4777776653 467888888889999433 3444433323444444444444443
No 229
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=23.52 E-value=1.9e+02 Score=25.92 Aligned_cols=33 Identities=24% Similarity=0.117 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q psy12966 697 IVLIGLAFLCLWKILTSIHDRREFAKFEKERML 729 (741)
Q Consensus 697 ivliGl~lLliwK~~~~i~DrrE~~kFekE~~~ 729 (741)
+++++++++++|--..+...-.|.++.++|..+
T Consensus 21 ~~v~~~a~~~v~~~~~~~~~~~~l~~l~~~~~~ 53 (97)
T PF04999_consen 21 IVVLISALGVVYSRHQSRQLFYELQQLEKEIDQ 53 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555444444555566666666544
No 230
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=23.40 E-value=1.1e+02 Score=25.69 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=20.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEK 725 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~kFek 725 (741)
...+|++|+++ +||+++--|. +-=+-+-.||++.++
T Consensus 6 r~~~~~ggfVg---~iG~a~Ypi~--~~Pmm~~eeYk~~Q~ 41 (58)
T PF15061_consen 6 RYALFVGGFVG---LIGAALYPIY--FRPMMNPEEYKKEQK 41 (58)
T ss_pred cchhhHHHHHH---HHHHHHhhhh--cccccChHHHHHHHH
Confidence 34556665543 5666664433 223446678887654
No 231
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=23.30 E-value=1.2e+02 Score=30.48 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=26.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRRE 719 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE 719 (741)
|...++.-+|..+||++|+.-++||-+..+-+.|+
T Consensus 23 n~~~~~~~~Inflill~lL~~fl~kPI~~~l~~R~ 57 (184)
T CHL00019 23 NTDILETNLINLSVVLGVLIYFGKGVLSDLLDNRK 57 (184)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 33334445788889999999999998887777664
No 232
>PRK11899 prephenate dehydratase; Provisional
Probab=22.82 E-value=1.4e+02 Score=32.51 Aligned_cols=48 Identities=8% Similarity=0.151 Sum_probs=35.8
Q ss_pred EEeccCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEee
Q psy12966 114 DYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFV 168 (741)
Q Consensus 114 ~~~~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFv 168 (741)
.-|+..+.+=+-+|.+|+.+++.|. ++ .+.+++|++.+..+|+ +|+|-
T Consensus 226 eSRP~~~~~~~Y~F~id~eg~~~d~--~v----~~aL~~l~~~~~~~kv-LGsYp 273 (279)
T PRK11899 226 ESYMVGGSFTATQFYADIEGHPEDR--NV----ALALEELRFFSEEVRI-LGVYP 273 (279)
T ss_pred EeeecCCCCceEEEEEEEECCCCCH--HH----HHHHHHHHHhcCcEEE-eeeec
Confidence 3456667789999999999998765 22 4556677888888887 68883
No 233
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=22.60 E-value=2.2e+02 Score=25.29 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=35.3
Q ss_pred hHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHh
Q psy12966 228 GFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQ 307 (741)
Q Consensus 228 ~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e 307 (741)
|.+..+.|+ |.+.-+++|++.|++.+. ...|..+..+
T Consensus 12 G~~~vlkaI--------k~gkakLViiA~Da~~~~-----------------------------------~k~i~~~c~~ 48 (82)
T PRK13601 12 GAKQTLKAI--------TNCNVLQVYIAKDAEEHV-----------------------------------TKKIKELCEE 48 (82)
T ss_pred chHHHHHHH--------HcCCeeEEEEeCCCCHHH-----------------------------------HHHHHHHHHh
Confidence 455666666 346788999999999543 5668888888
Q ss_pred cCccEEEEEec
Q psy12966 308 NSINLIFAVTA 318 (741)
Q Consensus 308 ~~I~~Ifavt~ 318 (741)
++|..++.-+.
T Consensus 49 ~~Vpv~~~~t~ 59 (82)
T PRK13601 49 KSIKIVYIDTM 59 (82)
T ss_pred CCCCEEEeCCH
Confidence 99988766654
No 234
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=22.39 E-value=3.3e+02 Score=21.73 Aligned_cols=15 Identities=33% Similarity=0.782 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy12966 687 LGLVLGVIGAIVLIGLAF 704 (741)
Q Consensus 687 ~~Ivlgvi~~ivliGl~l 704 (741)
..|+|||+ +-|||++
T Consensus 11 vvIil~If---~~iGl~I 25 (49)
T PF11044_consen 11 VVIILGIF---AWIGLSI 25 (49)
T ss_pred HHHHHHHH---HHHHHHH
Confidence 45666665 4566654
No 235
>PF15345 TMEM51: Transmembrane protein 51
Probab=22.27 E-value=64 Score=34.11 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q psy12966 701 GLAFLCLWKILTSIHDRREFAKFEKERML 729 (741)
Q Consensus 701 Gl~lLliwK~~~~i~DrrE~~kFekE~~~ 729 (741)
|++||| ..|+..|.|||.=+.=+.+.++
T Consensus 68 Gv~LLL-LSICL~IR~KRr~rq~~e~~Q~ 95 (233)
T PF15345_consen 68 GVALLL-LSICLSIRDKRRRRQGEERIQH 95 (233)
T ss_pred HHHHHH-HHHHHHHHHHHHHhhccccccc
Confidence 555555 6788889999987766664443
No 236
>KOG1214|consensus
Probab=22.25 E-value=1.5e+02 Score=36.93 Aligned_cols=58 Identities=17% Similarity=0.191 Sum_probs=36.9
Q ss_pred ecCCCCCceeeec----CceEecCCceeccc------------cccCCCCccccCccccCCcccccc-------cccccc
Q psy12966 539 CVLDLNTVGACVA----SAIVKTAGLVQRVT------------VAPLMTPVYLLREERCARARESVS-------AVCANV 595 (741)
Q Consensus 539 C~~~~gG~G~C~c----g~C~C~~G~~G~~~------------~~~C~~~~~~~~~~~Csg~G~C~c-------G~C~~~ 595 (741)
|+..+|.+..|+- -+|+|..||.=.-+ ...|... .-.|.-.|.|.| -.|.
T Consensus 740 ~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g-----~h~C~i~g~a~c~~hGgs~y~C~-- 812 (1289)
T KOG1214|consen 740 GFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDG-----SHTCAIAGQARCVHHGGSTYSCA-- 812 (1289)
T ss_pred CCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccC-----ccccCcCCceEEEecCCceEEEe--
Confidence 5555667888874 27888877653111 2233222 145777777776 2789
Q ss_pred ccccccCCCCCccc
Q psy12966 596 LKIAREDIPAGSAR 609 (741)
Q Consensus 596 ~~C~~~~~~gy~G~ 609 (741)
| -+||+|+
T Consensus 813 --C----LPGfsGD 820 (1289)
T KOG1214|consen 813 --C----LPGFSGD 820 (1289)
T ss_pred --e----cCCccCC
Confidence 9 9999999
No 237
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=21.99 E-value=88 Score=25.88 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=10.1
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFL 705 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lL 705 (741)
++|.|++.|+ |+|+-.|++|
T Consensus 4 ~~wlIIviVl-gvIigNia~L 23 (55)
T PF11446_consen 4 NPWLIIVIVL-GVIIGNIAAL 23 (55)
T ss_pred hhhHHHHHHH-HHHHhHHHHH
Confidence 4566665555 4444444443
No 238
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=21.62 E-value=72 Score=25.23 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=15.2
Q ss_pred cc--cccccccccccccCCCCCccc--CCCCC
Q psy12966 587 SV--SAVCANVLKIAREDIPAGSAR--NARPV 614 (741)
Q Consensus 587 C~--cG~C~~~~~C~~~~~~gy~G~--e~Cp~ 614 (741)
|+ .|+|. | .++|.|. +.|+.
T Consensus 14 C~~~~G~C~----C----~~~~~G~~C~~C~~ 37 (50)
T cd00055 14 CDPGTGQCE----C----KPNTTGRRCDRCAP 37 (50)
T ss_pred ccCCCCEEe----C----CCcCCCCCCCCCCC
Confidence 64 48888 9 7899998 67754
No 239
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=21.46 E-value=57 Score=30.85 Aligned_cols=24 Identities=21% Similarity=0.056 Sum_probs=18.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLliw 708 (741)
+.|-+|+-++.|||+-|+++++++
T Consensus 82 ~p~evvG~l~LGvV~GG~i~vLcy 105 (127)
T PF06040_consen 82 SPWEVVGYLILGVVAGGLIAVLCY 105 (127)
T ss_pred CCeeeeehhhHHHHhccHHHHHHH
Confidence 557777778888888888777755
No 240
>COG1470 Predicted membrane protein [Function unknown]
Probab=21.21 E-value=1.1e+02 Score=35.62 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=27.5
Q ss_pred EEEeeCccEEEEEEEeccCCCcceeEEeecCC
Q psy12966 101 LKLRINEAYRMVVDYAQAEDYPVDLYYLMDLS 132 (741)
Q Consensus 101 ~~LR~G~~~~~~~~~~~~~~~pvDly~LmDlS 132 (741)
++|||++.++|+++|.+...-.-+++|-+|=+
T Consensus 39 ~~lr~~e~~~l~~~v~~~~~g~~~v~f~i~~~ 70 (513)
T COG1470 39 LKLRPKESVELQFKVLPGKAGSYSVKFSIEGV 70 (513)
T ss_pred eEcCCCcceEEEEEEecCCCCcEEEEEEECCc
Confidence 78999999999999998876678888887744
No 241
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=21.17 E-value=1e+02 Score=28.10 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy12966 687 LGLVLGVIGAIVLIGLAFLC 706 (741)
Q Consensus 687 ~~Ivlgvi~~ivliGl~lLl 706 (741)
..+++|++.+..++|+++-+
T Consensus 28 ~~~~~Gi~~~~~l~g~~lg~ 47 (95)
T TIGR02762 28 TLFGIGILSGKALIGLILGA 47 (95)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 34455555555555555544
No 242
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=20.96 E-value=1.3e+02 Score=26.05 Aligned_cols=31 Identities=35% Similarity=0.454 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy12966 690 VLGVIGAIVLIGLAFLCLWKILTSIHDRREFA 721 (741)
Q Consensus 690 vlgvi~~ivliGl~lLliwK~~~~i~DrrE~~ 721 (741)
+.||+++|++ |++.++.=-.+..-.||||=+
T Consensus 35 aIGvi~gi~~-~~lt~ltN~YFK~k~drr~~a 65 (68)
T PF04971_consen 35 AIGVIGGIFF-GLLTYLTNLYFKIKEDRRKAA 65 (68)
T ss_pred hHHHHHHHHH-HHHHHHhHhhhhhhHhhhHhh
Confidence 3455555443 344433332333344555543
No 243
>PRK09190 hypothetical protein; Provisional
Probab=20.81 E-value=3.5e+02 Score=28.55 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=19.7
Q ss_pred hHHHHHHHHhccccccccCCccEEEEEecCCCCCc
Q psy12966 228 GFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHH 262 (741)
Q Consensus 228 ~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~ 262 (741)
|++....|+ +.+.-++||+++|+....
T Consensus 115 G~~~V~~al--------k~gk~~Lvi~A~DaS~~t 141 (220)
T PRK09190 115 GFEKVDAAL--------RSGEAAALIHASDGAADG 141 (220)
T ss_pred cHHHHHHHH--------HcCCceEEEEeccCChhH
Confidence 467777776 345679999999998543
No 244
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
Probab=20.79 E-value=2.1e+02 Score=34.27 Aligned_cols=70 Identities=20% Similarity=0.325 Sum_probs=54.0
Q ss_pred ecceeEEEEEeeCccEEEEEEEeccCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEee
Q psy12966 94 ISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFV 168 (741)
Q Consensus 94 i~Pq~v~~~LR~G~~~~~~~~~~~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFv 168 (741)
|+|..+-+.|-| |..++..+...+...|.=..|+||+.- |=++|..|-+.|...|..+..+.-+||..|-
T Consensus 95 iS~~~Lplellp-qssTiey~lskp~~~ppvf~fvvD~~~----D~e~l~~LkdslivslsllppeaLvglItyg 164 (755)
T COG5047 95 ISNANLPLELLP-QSSTIEYTLSKPVILPPVFFFVVDACC----DEEELTALKDSLIVSLSLLPPEALVGLITYG 164 (755)
T ss_pred CCcccCCccccC-CCceEEEEccCCccCCceEEEEEEeec----CHHHHHHHHHHHHHHHhcCCccceeeEEEec
Confidence 555555555544 345666777778888888999999987 7777888888999999999999999987764
No 245
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=20.67 E-value=1.5e+02 Score=33.71 Aligned_cols=48 Identities=13% Similarity=0.405 Sum_probs=36.1
Q ss_pred EEeccCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEee
Q psy12966 114 DYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFV 168 (741)
Q Consensus 114 ~~~~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFv 168 (741)
.-|+..+.+-+.+|.+|+.+++.|. .+ .+.++.|++.+..+|+ +|+|-
T Consensus 329 eSRP~~~~~~~Y~Ffid~eg~~~d~--~~----~~aL~~l~~~~~~~kv-LGsYp 376 (386)
T PRK10622 329 ESRPIHGNPWEEMFYLDVQANLRSA--EM----QKALKELGEITRSLKV-LGCYP 376 (386)
T ss_pred EeeecCCCCceEEEEEEEeCCCCCH--HH----HHHHHHHHHhcCcEEE-eeeec
Confidence 3466677789999999999999875 22 3446677788888876 78883
No 246
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=20.52 E-value=1.5e+02 Score=31.67 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=26.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRRE 719 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE 719 (741)
+++.+++-+|-.+||+.|+--++||=+..+.|.|+
T Consensus 4 d~~t~~~qiInFlILv~lL~~fl~kPi~~~l~eR~ 38 (250)
T PRK14474 4 DWFTVVAQIINFLILVYLLRRFLYKPIIQVMKKRQ 38 (250)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888899999999999996666555553
Done!