Query psy12966
Match_columns 741
No_of_seqs 293 out of 1485
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 15:41:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fcs_B Integrin beta-3; beta p 100.0 6E-147 2E-151 1282.0 52.6 630 2-683 18-690 (690)
2 3k6s_B Integrin beta-2; cell r 100.0 1E-147 4E-152 1285.4 36.7 620 2-687 16-680 (687)
3 3t3p_B Integrin beta-3; integr 100.0 2E-133 7E-138 1112.5 38.1 446 2-484 18-472 (472)
4 3v4v_B Integrin beta-7; cell a 100.0 1E-132 5E-137 1108.6 35.9 445 2-487 37-496 (503)
5 3vi3_B Integrin beta-1; beta p 100.0 2E-126 7E-131 1049.5 38.6 419 2-449 20-449 (454)
6 2iue_A Pactolus I-domain; memb 100.0 3.8E-67 1.3E-71 531.7 20.5 212 120-357 1-212 (212)
7 2p26_A Integrin beta-2; hybrid 100.0 2E-47 6.9E-52 402.2 15.0 171 354-538 99-275 (280)
8 2p28_B Integrin beta-2; hybrid 100.0 7.7E-36 2.6E-40 304.2 16.0 194 356-563 1-210 (217)
9 2knc_B Integrin beta-3; transm 99.9 4.9E-26 1.7E-30 196.1 6.0 64 678-741 2-65 (79)
10 1s4x_A Integrin beta-3; cell a 99.7 2.1E-19 7.2E-24 149.2 1.1 44 698-741 10-53 (67)
11 2kv9_B Integrin beta-3; platel 99.6 2.7E-17 9.1E-22 138.8 1.6 42 700-741 20-61 (75)
12 2k9j_B Integrin beta-3; transm 99.6 9.6E-17 3.3E-21 122.5 3.9 43 678-720 1-43 (43)
13 2p26_A Integrin beta-2; hybrid 99.6 2.3E-16 7.9E-21 166.2 5.7 154 394-593 84-257 (280)
14 3k6s_B Integrin beta-2; cell r 99.5 2.4E-14 8.3E-19 167.1 6.7 124 458-614 481-627 (687)
15 3g9w_C Integrin beta-1D; prote 99.5 1.7E-14 5.9E-19 114.2 3.4 33 709-741 3-35 (52)
16 3fcs_B Integrin beta-3; beta p 99.4 1.4E-13 4.9E-18 160.9 11.2 115 459-609 493-624 (690)
17 1m8o_B Platele integrin BETA3 99.4 8E-14 2.7E-18 108.6 2.6 33 709-741 1-33 (47)
18 2ygq_A WIF-1, WNT inhibitory f 99.1 3.9E-11 1.3E-15 129.1 6.2 126 460-625 154-290 (324)
19 2p28_B Integrin beta-2; hybrid 99.1 4.4E-11 1.5E-15 121.8 5.5 87 505-609 95-210 (217)
20 1mf7_A Integrin alpha M; cell 99.0 7.8E-10 2.7E-14 108.5 11.0 111 121-261 4-119 (194)
21 2ygq_A WIF-1, WNT inhibitory f 99.0 1.3E-10 4.6E-15 124.9 5.1 113 459-609 185-304 (324)
22 1ijb_A VON willebrand factor; 99.0 7.9E-09 2.7E-13 102.6 17.5 139 121-317 12-153 (202)
23 1atz_A VON willebrand factor; 99.0 4.4E-09 1.5E-13 102.8 14.6 111 121-259 4-119 (189)
24 2xgg_A Microneme protein 2; A/ 99.0 2.2E-09 7.4E-14 104.4 12.2 138 121-317 16-158 (178)
25 1n3y_A Integrin alpha-X; alpha 98.9 5.2E-09 1.8E-13 102.4 13.0 135 120-316 7-146 (198)
26 1v7p_C Integrin alpha-2; snake 98.9 1E-08 3.4E-13 101.3 14.7 134 122-316 6-143 (200)
27 3ibs_A Conserved hypothetical 98.9 3.5E-08 1.2E-12 98.0 16.4 131 118-313 7-143 (218)
28 4hqo_A Sporozoite surface prot 98.9 8.4E-09 2.9E-13 107.1 12.2 136 120-317 16-161 (266)
29 4hqf_A Thrombospondin-related 98.8 1.2E-08 4.3E-13 106.4 12.4 133 120-313 19-161 (281)
30 1q0p_A Complement factor B; VO 98.8 1.6E-08 5.4E-13 100.5 12.1 120 119-262 12-141 (223)
31 3n2n_F Anthrax toxin receptor 98.8 1.7E-08 5.9E-13 97.5 12.0 109 119-260 4-118 (185)
32 2vj2_A Jagged-1; signalling, p 98.8 1.9E-09 6.5E-14 105.2 5.2 114 460-609 39-165 (169)
33 2odp_A Complement C2; C3/C5 co 98.8 4.7E-08 1.6E-12 109.8 17.0 117 116-261 3-137 (509)
34 1shu_X Anthrax toxin receptor 98.8 2.6E-08 8.7E-13 96.0 12.0 106 121-260 5-115 (182)
35 2b2x_A Integrin alpha-1; compu 98.8 3.6E-08 1.2E-12 99.1 13.0 135 121-316 21-159 (223)
36 1pt6_A Integrin alpha-1; cell 98.8 3.8E-08 1.3E-12 98.1 13.0 136 121-317 6-145 (213)
37 3hrz_D Complement factor B; se 98.7 7E-08 2.4E-12 113.2 15.2 116 117-264 238-371 (741)
38 4fx5_A VON willebrand factor t 98.7 5.7E-07 1.9E-11 101.1 21.7 186 120-376 75-280 (464)
39 3zqk_A VON willebrand factor; 98.7 6.5E-08 2.2E-12 95.7 12.3 115 119-260 18-137 (199)
40 1rrk_A Complement factor B; BB 98.7 2.6E-07 8.9E-12 103.2 17.6 117 122-262 1-127 (497)
41 1mjn_A Integrin alpha-L; rossm 98.6 1.5E-07 5.3E-12 91.5 10.5 109 122-261 2-116 (179)
42 2vj2_A Jagged-1; signalling, p 98.6 1.8E-08 6.3E-13 98.2 2.9 118 470-625 17-147 (169)
43 2x31_A Magnesium-chelatase 60 98.5 2.2E-07 7.5E-12 90.4 8.8 114 119-263 2-116 (189)
44 2gy5_A Angiopoietin-1 receptor 98.4 4.4E-07 1.5E-11 100.9 7.7 94 460-563 204-316 (423)
45 2gy5_A Angiopoietin-1 receptor 98.2 1.2E-06 4.3E-11 97.3 8.1 107 471-609 186-316 (423)
46 2jf1_T Integrin beta-2 subunit 98.2 3.8E-07 1.3E-11 66.6 1.6 21 720-741 1-21 (35)
47 3k6s_A Integrin alpha-X; cell 98.2 1.8E-06 6.1E-11 106.4 8.4 136 120-317 128-268 (1095)
48 2ww8_A RRGA, cell WALL surface 98.2 6.1E-06 2.1E-10 99.4 12.5 139 119-262 221-392 (893)
49 2x5n_A SPRPN10, 26S proteasome 98.1 3.5E-05 1.2E-09 76.6 14.7 144 124-331 4-159 (192)
50 4b4t_W RPN10, 26S proteasome r 98.0 1.4E-05 4.9E-10 83.6 9.7 148 125-332 6-162 (268)
51 2vj3_A Neurogenic locus notch 97.9 1.4E-05 4.9E-10 74.6 7.0 85 459-562 13-114 (135)
52 4d90_A EGF-like repeat and dis 97.7 4.8E-05 1.7E-09 71.1 7.3 93 460-563 7-129 (143)
53 3rag_A Uncharacterized protein 97.6 5.4E-05 1.8E-09 78.0 6.3 92 119-236 131-222 (242)
54 1z1y_A Ookinete surface protei 97.5 4.9E-05 1.7E-09 74.6 4.3 127 458-609 10-171 (186)
55 1klo_A Laminin; glycoprotein; 97.4 7.3E-05 2.5E-09 72.4 4.1 111 461-614 3-149 (162)
56 2vj3_A Neurogenic locus notch 97.3 0.00026 8.9E-09 66.0 6.2 83 506-609 13-115 (135)
57 2wg3_C Hedgehog-interacting pr 97.2 6E-05 2.1E-09 84.6 1.2 69 472-563 379-451 (463)
58 1jey_B KU80; double-strand DNA 97.0 0.0061 2.1E-07 70.0 14.2 143 122-316 7-165 (565)
59 4aqs_A Laminin subunit beta-1; 97.0 0.00094 3.2E-08 75.8 7.3 15 470-484 279-293 (525)
60 2wg3_C Hedgehog-interacting pr 96.9 0.00032 1.1E-08 78.7 2.6 55 461-538 399-455 (463)
61 1z1y_A Ookinete surface protei 96.7 0.00066 2.3E-08 66.4 3.3 85 460-563 55-171 (186)
62 2l8s_A Integrin alpha-1; trans 96.6 0.0022 7.4E-08 50.9 4.6 33 681-713 4-36 (54)
63 4aqs_A Laminin subunit beta-1; 96.5 0.00094 3.2E-08 75.9 2.8 60 470-537 407-474 (525)
64 2knc_A Integrin alpha-IIB; tra 96.3 0.0041 1.4E-07 49.5 4.8 34 680-713 6-39 (54)
65 2k1a_A Integrin alpha-IIB; sin 96.2 0.0051 1.8E-07 46.5 4.6 32 680-711 4-35 (42)
66 2bou_A EGF-like module contain 96.2 0.0077 2.6E-07 56.3 7.0 99 459-571 7-138 (143)
67 1pcx_A Protein transport prote 96.1 0.18 6.3E-06 60.2 19.9 239 121-376 186-455 (810)
68 4d90_A EGF-like repeat and dis 96.1 0.0038 1.3E-07 58.0 4.4 83 506-609 6-129 (143)
69 1yo8_A Thrombospondin-2; EGF, 96.1 0.015 5.2E-07 67.5 9.8 84 461-562 11-139 (634)
70 2ks1_B Epidermal growth factor 95.6 0.0082 2.8E-07 45.8 3.4 30 679-708 2-32 (44)
71 2e26_A Reelin, reeler protein; 95.5 0.0035 1.2E-07 73.3 1.5 70 470-562 518-589 (725)
72 1jey_A KU70; double-strand DNA 95.3 0.089 3E-06 60.9 12.5 49 123-171 36-92 (609)
73 1m2v_B SEC24, protein transpor 95.1 0.27 9.4E-06 59.5 16.3 234 122-376 303-571 (926)
74 2bou_A EGF-like module contain 95.0 0.025 8.7E-07 52.7 5.5 93 506-609 7-130 (143)
75 2y38_A Laminin subunit alpha-5 94.9 0.023 8E-07 62.6 5.5 21 469-489 285-306 (403)
76 2ygo_A WIF-1, WNT inhibitory f 94.7 0.071 2.4E-06 52.8 7.9 72 391-485 108-180 (188)
77 2e26_A Reelin, reeler protein; 94.6 0.012 4.2E-07 68.8 2.6 46 519-570 520-569 (725)
78 1m2o_A SEC23, protein transpor 94.5 0.91 3.1E-05 53.9 18.5 236 120-376 119-417 (768)
79 3eh1_A Protein transport prote 94.5 1.6 5.6E-05 51.7 20.3 195 122-334 160-370 (751)
80 1klo_A Laminin; glycoprotein; 94.1 0.037 1.3E-06 53.3 4.4 21 469-489 74-96 (162)
81 3zyj_B Netrin-G1; cell adhesio 94.0 0.032 1.1E-06 61.8 4.2 94 470-593 313-415 (426)
82 1yvr_A RO autoantigen, 60-kDa 93.7 0.086 2.9E-06 60.0 7.2 102 119-261 365-473 (538)
83 4aqt_A Laminin subunit gamma-1 93.6 0.051 1.7E-06 59.4 4.8 14 471-484 273-286 (375)
84 2nut_A Protein transport prote 93.1 1.7 5.9E-05 51.6 17.2 235 121-376 131-423 (769)
85 2nvo_A RO sixty-related protei 93.0 0.11 3.7E-06 59.3 6.4 53 116-170 356-414 (535)
86 2l2t_A Receptor tyrosine-prote 92.8 0.12 3.9E-06 39.5 4.2 27 682-708 5-31 (44)
87 1aut_L Activated protein C; se 92.4 0.17 5.9E-06 45.4 5.7 27 459-485 20-50 (114)
88 1yo8_A Thrombospondin-2; EGF, 92.1 0.15 5.1E-06 59.3 6.1 95 506-619 9-161 (634)
89 2brq_C Integrin beta-7 subunit 90.8 0.067 2.3E-06 37.8 0.9 12 730-741 1-12 (31)
90 2k1k_A Ephrin type-A receptor 88.9 0.29 1E-05 36.1 3.0 24 685-708 12-35 (38)
91 2ddu_A Reelin; beta-jelly-roll 88.2 0.13 4.5E-06 56.1 1.2 25 460-484 197-223 (387)
92 4fbr_A Lectin, myxobacterial h 88.2 0.023 7.7E-07 59.4 -4.6 26 460-485 39-68 (267)
93 4fbr_A Lectin, myxobacterial h 87.5 0.023 7.8E-07 59.3 -5.1 27 460-486 106-136 (267)
94 2ddu_A Reelin; beta-jelly-roll 87.4 0.2 6.7E-06 54.8 1.9 30 527-562 188-217 (387)
95 3h5c_B Vitamin K-dependent pro 87.3 0.51 1.8E-05 49.3 5.1 26 461-486 13-42 (317)
96 2w86_A Fibrillin-1, fibrillin1 87.1 0.2 6.7E-06 46.9 1.5 47 517-569 88-146 (147)
97 1uzk_A Fibrillin-1; glycoprote 87.0 0.11 3.7E-06 49.4 -0.3 114 460-609 11-155 (162)
98 4aqt_A Laminin subunit gamma-1 86.2 0.23 7.9E-06 54.2 1.7 36 518-559 273-316 (375)
99 3eh2_A Protein transport prote 85.9 17 0.0006 43.0 17.6 237 121-376 172-438 (766)
100 1dx5_I Thrombomodulin; serine 85.0 0.52 1.8E-05 42.5 3.2 71 471-563 25-111 (118)
101 3v4v_B Integrin beta-7; cell a 84.9 0.18 6.1E-06 56.9 0.0 27 506-538 467-494 (503)
102 3efo_B SEC24 related gene fami 82.8 33 0.0011 40.7 18.2 237 121-375 176-441 (770)
103 2y38_A Laminin subunit alpha-5 81.0 0.73 2.5E-05 50.7 2.9 18 517-540 286-303 (403)
104 3u7u_G Neuregulin 1; signaling 80.5 0.97 3.3E-05 35.9 2.7 27 460-486 15-50 (55)
105 1x7a_L Coagulation factor IX, 80.0 1.8 6E-05 40.7 4.9 26 460-485 55-84 (146)
106 1nql_B Epidermal growth factor 80.0 1.1 3.7E-05 35.1 2.8 29 458-486 11-45 (53)
107 2ygo_A WIF-1, WNT inhibitory f 79.7 0.79 2.7E-05 45.3 2.4 27 506-538 153-180 (188)
108 1edm_B Factor IX; epidermal gr 79.4 1.1 3.8E-05 32.2 2.5 25 460-484 10-38 (39)
109 1a3p_A Epidermal growth factor 79.0 0.96 3.3E-05 33.9 2.1 27 460-486 10-42 (45)
110 3t3p_B Integrin beta-3; integr 78.8 0.6 2.1E-05 52.3 1.4 26 506-537 446-472 (472)
111 1tpg_A T-plasminogen activator 78.5 0.95 3.3E-05 39.1 2.3 44 471-532 33-83 (91)
112 2c4f_L Coagulation factor VII 78.5 1.2 4.1E-05 41.5 3.1 26 460-485 54-83 (142)
113 3ca7_A Protein spitz; argos, E 78.4 0.86 2.9E-05 35.3 1.8 26 460-485 15-48 (52)
114 2jwa_A Receptor tyrosine-prote 78.1 3.7 0.00012 31.3 5.1 12 684-695 9-20 (44)
115 1tpg_A T-plasminogen activator 78.0 1.4 4.7E-05 38.0 3.2 65 518-609 3-82 (91)
116 1k36_A Epiregulin; EGF-like fo 77.8 1.4 4.9E-05 33.4 2.8 25 460-485 13-43 (46)
117 2k9y_A Ephrin type-A receptor 77.6 2.5 8.6E-05 31.1 4.1 26 683-708 9-34 (41)
118 1egf_A Epidermal growth factor 77.2 1.5 5.1E-05 34.1 2.9 27 460-486 13-45 (53)
119 3fl7_A Ephrin receptor; ATP-bi 76.8 1 3.4E-05 51.4 2.5 97 368-485 180-278 (536)
120 3zyj_B Netrin-G1; cell adhesio 76.5 1.2 4E-05 49.4 2.8 26 580-613 372-400 (426)
121 3ltf_D Protein spitz; receptor 75.5 1.4 4.6E-05 35.3 2.2 27 460-486 15-49 (58)
122 3cfw_A L-selectin; EGF, cell a 75.3 1.4 4.7E-05 41.4 2.6 27 459-485 125-155 (164)
123 2knc_B Integrin beta-3; transm 74.3 12 0.0004 31.9 7.8 55 686-741 14-77 (79)
124 1hae_A Heregulin-alpha; growth 74.0 1.6 5.4E-05 35.0 2.3 26 461-486 14-48 (63)
125 1nfu_B Coagulation factor XA, 71.0 1.1 3.7E-05 44.6 0.7 25 461-485 50-78 (195)
126 1emn_A Fibrillin; extracellula 67.2 5.4 0.00019 33.4 4.3 55 507-569 13-81 (82)
127 1aut_L Activated protein C; se 65.9 4.9 0.00017 35.7 3.9 57 507-569 21-92 (114)
128 2fd6_A Urokinase-type plasmino 65.6 5.2 0.00018 36.4 4.1 27 461-487 3-36 (122)
129 3u7u_G Neuregulin 1; signaling 65.2 3.4 0.00012 32.7 2.4 27 506-538 14-49 (55)
130 1g1s_A P-selectin; selectin, l 65.1 2.2 7.4E-05 39.9 1.5 26 460-485 126-155 (162)
131 1lmj_A Fibrillin 1; EGF, calci 65.0 4.3 0.00015 34.2 3.2 56 507-569 12-85 (86)
132 2ks1_B Epidermal growth factor 63.9 8.5 0.00029 29.3 4.2 29 681-709 8-36 (44)
133 2vh0_B Activated factor XA lig 61.8 2.4 8.2E-05 39.0 1.1 25 461-485 50-78 (134)
134 1x7a_L Coagulation factor IX, 60.3 3.9 0.00013 38.3 2.3 50 506-562 54-117 (146)
135 3fl7_A Ephrin receptor; ATP-bi 59.6 3.8 0.00013 46.6 2.5 51 506-562 250-320 (536)
136 2rnl_A Amphiregulin; AR, color 58.8 4 0.00014 31.7 1.7 26 459-485 18-49 (50)
137 1afo_A Glycophorin A; integral 57.4 14 0.00049 27.2 4.2 24 683-708 9-32 (40)
138 2l2t_A Receptor tyrosine-prote 57.1 11 0.00036 28.8 3.7 29 681-709 7-35 (44)
139 1g1t_A E-selectin; EGF, adhesi 56.4 3.6 0.00012 38.1 1.3 27 459-485 125-155 (157)
140 1n7d_A LDL receptor, low-densi 55.0 23 0.00078 41.3 8.1 46 553-609 316-365 (699)
141 1v54_D Cytochrome C oxidase su 54.5 32 0.0011 32.6 7.5 52 684-740 75-132 (147)
142 1emn_A Fibrillin; extracellula 53.7 10 0.00035 31.6 3.6 55 460-532 13-77 (82)
143 2l34_A TYRO protein tyrosine k 53.1 7 0.00024 27.9 2.0 22 685-706 8-29 (33)
144 1cd1_A CD1, MCD1D.1; immunolog 52.6 2.9 0.0001 44.0 0.0 15 685-699 282-296 (315)
145 2w2n_E LDL receptor, low-densi 51.3 6.9 0.00024 34.6 2.3 75 474-569 18-106 (107)
146 3e50_C Protransforming growth 51.2 5.1 0.00017 31.2 1.2 26 459-485 14-45 (50)
147 2k2s_B Micronemal protein 6; m 50.5 5.2 0.00018 32.3 1.2 24 461-484 19-49 (61)
148 2aif_A Ribosomal protein L7A; 50.2 45 0.0015 30.8 7.7 83 228-358 45-131 (135)
149 1iij_A ERBB-2 receptor protein 48.2 4.8 0.00016 29.2 0.5 23 686-708 7-31 (35)
150 2ktc_A Potassium channel toxin 48.2 4.6 0.00016 28.6 0.4 25 536-560 5-32 (34)
151 1iox_A Betacellulin; EGF-like 48.2 5.3 0.00018 31.0 0.8 26 459-485 14-45 (50)
152 2c4f_L Coagulation factor VII 48.1 12 0.00041 34.5 3.5 51 506-562 53-120 (142)
153 2y69_D Cytochrome C oxidase su 46.7 48 0.0017 32.1 7.5 52 684-740 97-154 (169)
154 1nfu_B Coagulation factor XA, 46.6 5.9 0.0002 39.2 1.1 50 506-562 48-112 (195)
155 2klu_A T-cell surface glycopro 46.0 25 0.00084 29.0 4.4 32 684-718 8-39 (70)
156 2k1k_A Ephrin type-A receptor 43.7 34 0.0012 25.0 4.5 26 684-709 8-33 (38)
157 3bkd_A Transmembrane domain of 42.9 24 0.00081 23.5 3.1 18 695-717 7-24 (26)
158 1pi7_A VPU protein, U ORF prot 42.8 27 0.00094 25.4 3.8 23 700-727 14-36 (36)
159 1nql_B Epidermal growth factor 42.3 12 0.00039 29.2 2.0 27 506-538 12-44 (53)
160 2ljb_A M2 protein, BM2 protein 42.2 28 0.00097 24.8 3.7 22 696-722 12-33 (35)
161 2ale_A SNU13, NHP2/L7AE family 42.1 70 0.0024 29.5 7.7 82 228-357 36-124 (134)
162 3lbw_A M2 protein; proton chan 41.5 27 0.00091 22.7 3.1 17 696-717 5-21 (23)
163 2vh0_B Activated factor XA lig 40.1 8.8 0.0003 35.2 1.1 50 507-562 49-112 (134)
164 2i9a_A Urokinase-type plasmino 39.1 12 0.00042 35.1 2.0 28 460-487 14-48 (145)
165 3s8f_C Cytochrome C oxidase po 38.9 31 0.0011 24.8 3.6 24 691-714 6-29 (34)
166 3cfw_A L-selectin; EGF, cell a 38.4 7.7 0.00026 36.1 0.4 30 506-541 125-161 (164)
167 1xdt_R Hbegf, heparin-binding 38.2 11 0.00036 32.3 1.2 26 459-485 46-77 (79)
168 2jwa_A Receptor tyrosine-prote 37.8 25 0.00086 26.7 3.1 20 681-700 9-28 (44)
169 3m0c_C LDL receptor, low-densi 37.5 29 0.00099 41.2 5.3 10 553-562 334-343 (791)
170 1n7d_A LDL receptor, low-densi 37.4 62 0.0021 37.6 8.0 49 517-571 315-373 (699)
171 3g5c_A ADAM 22; alpha/beta fol 36.9 14 0.00049 41.7 2.4 29 459-487 454-483 (510)
172 1a3p_A Epidermal growth factor 34.8 14 0.00049 27.3 1.4 25 507-537 10-40 (45)
173 1t2y_A Metallothionein, MT; pr 34.2 14 0.00046 25.0 1.0 15 507-521 4-19 (26)
174 3h5c_B Vitamin K-dependent pro 33.8 35 0.0012 35.2 4.6 57 506-569 11-82 (317)
175 3cpq_A 50S ribosomal protein L 32.3 82 0.0028 27.8 6.2 76 228-351 25-104 (110)
176 2kih_A Matrix protein 2; S31N, 31.9 29 0.00098 25.7 2.4 18 697-719 13-30 (43)
177 1q90_G Cytochrome B6F complex 31.3 35 0.0012 24.9 2.7 22 684-706 4-25 (37)
178 2l34_A TYRO protein tyrosine k 31.2 67 0.0023 22.8 4.3 25 684-708 4-28 (33)
179 3ca7_A Protein spitz; argos, E 31.2 14 0.00047 28.3 0.8 26 507-538 15-48 (52)
180 1q4g_A Prostaglandin G/H synth 31.0 17 0.0006 41.4 1.9 26 461-486 10-41 (553)
181 2fd6_A Urokinase-type plasmino 30.8 21 0.00073 32.3 2.1 25 508-538 3-34 (122)
182 2day_A Ring finger protein 25; 29.4 1.4E+02 0.0048 26.5 7.4 56 95-150 38-102 (128)
183 1dx5_I Thrombomodulin; serine 27.8 19 0.00065 32.1 1.2 74 518-609 25-111 (118)
184 1egf_A Epidermal growth factor 27.4 27 0.00093 26.7 1.9 26 507-538 13-44 (53)
185 2w2n_E LDL receptor, low-densi 27.0 21 0.00072 31.4 1.3 10 553-562 51-60 (107)
186 1oqw_A Fimbrial protein; type 26.4 67 0.0023 29.4 4.8 34 694-727 7-40 (144)
187 1hae_A Heregulin-alpha; growth 26.4 22 0.00074 28.2 1.1 27 506-538 12-47 (63)
188 1rlg_A 50S ribosomal protein L 26.1 1.8E+02 0.0062 25.8 7.5 83 228-358 31-118 (119)
189 3sok_A Fimbrial protein; pilus 25.7 88 0.003 29.0 5.5 35 694-728 7-41 (151)
190 1acw_A Natural scorpion peptid 25.5 8.3 0.00028 26.4 -1.2 23 536-558 3-28 (29)
191 3nt1_A Prostaglandin-endoperox 25.4 27 0.00093 40.1 2.2 27 460-486 8-40 (587)
192 2jnb_A NHP2-like protein 1; sp 25.4 30 0.001 32.5 2.1 98 208-357 37-139 (144)
193 3ltf_D Protein spitz; receptor 24.9 23 0.00078 28.0 1.0 26 507-538 15-48 (58)
194 2yz0_A Serine/threonine-protei 24.5 2.2E+02 0.0074 25.6 7.8 56 96-151 45-106 (138)
195 2i9a_A Urokinase-type plasmino 23.6 34 0.0012 32.0 2.2 26 507-538 14-46 (145)
196 1v54_I STA, cytochrome C oxida 23.4 95 0.0032 26.0 4.5 28 698-725 25-52 (73)
197 1vf5_G Protein PET G; photosyn 22.9 31 0.0011 25.1 1.3 22 684-706 4-25 (37)
198 1vq8_F 50S ribosomal protein L 22.6 1.6E+02 0.0056 26.2 6.5 51 301-357 64-119 (120)
199 1du9_A BMP02 neurotoxin; helix 22.6 21 0.00073 24.2 0.3 22 536-557 3-27 (28)
200 1lsh_B Lipovitellin (LV-2); vi 22.5 39 0.0013 35.9 2.6 6 99-104 55-60 (319)
201 1hji_B NUN-protein; bacterioph 21.8 56 0.0019 21.4 2.1 18 713-730 5-22 (26)
202 2hi2_A Fimbrial protein; type 21.4 66 0.0022 29.9 3.6 32 694-725 7-38 (158)
203 3m0c_C LDL receptor, low-densi 21.2 63 0.0021 38.3 4.2 47 518-570 334-390 (791)
204 1ukx_A GCN2, GCN2 EIF2alpha ki 20.3 1.3E+02 0.0045 26.9 5.4 57 96-152 44-108 (137)
205 3arc_J Photosystem II reaction 20.1 94 0.0032 23.0 3.3 20 689-708 11-30 (40)
206 1zlg_A Anosmin 1; insulin-like 20.1 48 0.0016 38.1 2.9 28 459-486 52-79 (680)
No 1
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=100.00 E-value=5.8e-147 Score=1282.04 Aligned_cols=630 Identities=36% Similarity=0.689 Sum_probs=567.4
Q ss_pred CCCCCccccccCCCCC-CCCCCCcC-CCCCcccCCCCCCceecCCcceeEeecccccccccccCCcccCCCCCCCCCCCC
Q psy12966 2 RICPVCPTYNSSEYGD-KKRCFQPS-LNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSSSSSGSF 79 (741)
Q Consensus 2 ~~~p~CaWC~~~~f~~-~~RC~~~~-l~~~~~~~gC~~~~i~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 79 (741)
+.+|.||||++++|+. ..|||+++ |+ ++||++++|+||+++++|++|+||+...+
T Consensus 18 ~~~p~CaWC~~~~f~~~~~RC~~~~~l~----~~gC~~~~i~~p~~~~~~~~~~pl~~~~~------------------- 74 (690)
T 3fcs_B 18 AVSPMCAWCSDEALPLGSPRCDLKENLL----KDNCAPESIEFPVSEARVLEDRPLSDKGS------------------- 74 (690)
T ss_dssp HHCTTCEEECCTTSCTTSCSEECHHHHH----HTTCCGGGEECCCCEEEEEECCCCCSBCC-------------------
T ss_pred CCCCCccccCCccCCCCCCCCCCHHHHh----HCCCCHHHeeCCCCceEEeecccCccccc-------------------
Confidence 4689999999999954 57999999 88 78999999999999999999999986420
Q ss_pred CCCCCCCCCCCceeecceeEEEEEeeCccEEEEEEEeccCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCc
Q psy12966 80 SSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSN 159 (741)
Q Consensus 80 ~~~~~~~~~~~~~qi~Pq~v~~~LR~G~~~~~~~~~~~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~ 159 (741)
+ ...+++||+||+|+|+||||++++|+|+|+++++||||||||||+|+||+|||++||+||.+|+++|+++|++
T Consensus 75 --~----~~~~~~qi~Pq~~~~~Lr~g~~~~f~~~~~~~~~~pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~ 148 (690)
T 3fcs_B 75 --G----DSSQVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSN 148 (690)
T ss_dssp ----------CCCCEESCEEEEEECTTCEEEEEEEEECCBTCCEEEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSC
T ss_pred --c----ccCCCceecCceEEEEeccCCcEEEEEEEeccCCCCccEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcC
Confidence 0 0135899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeeEeecccccCccccCcccc-cCCC----CCCCCCcceeeeecCCccHHHHHHhccceeeccCCCCCcchHHHHHH
Q psy12966 160 FRLGFGSFVDKVVMPYVSMVPKNL-LEPC----AGCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQ 234 (741)
Q Consensus 160 ~r~GfgsFvDk~~~P~~~~~p~~l-~~Pc----~~c~~~f~f~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~q 234 (741)
+|||||+|||||++||++++|++| +||| ..|+|||+|||+|+||+|+++|+++|++++||||+|+|||+||||||
T Consensus 149 ~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~~f~f~~~l~lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~q 228 (690)
T 3fcs_B 149 LRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQ 228 (690)
T ss_dssp EEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHH
T ss_pred ceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCCCccceeecccCCCHHHHHHHhhceeccCCCCCCchHHHHHHH
Confidence 999999999999999999999999 9999 47999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEE
Q psy12966 235 AIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIF 314 (741)
Q Consensus 235 a~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~If 314 (741)
||||.++||||++|+|||||+|||+||+|||||||||++||||+|||+.+|+|++++++|||||+||+++|+++||+|||
T Consensus 229 a~~c~~~igWr~~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~i~~if 308 (690)
T 3fcs_B 229 ATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIF 308 (690)
T ss_dssp HHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEE
T ss_pred HhhcccccCCCCCceEEEEEECCCccccCCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecchhhhHHHHhhcccCceeeeccCCcchHHHHHHHHhhhccceEEeeeCC-CCceEEEEEeecCCCCCCCCCCCCCC
Q psy12966 315 AVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKDGPSKPTAKCD 393 (741)
Q Consensus 315 avt~~~~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI~~aY~~i~s~v~l~~~~-~~~~~v~~~s~C~~~~~~~~~~~~C~ 393 (741)
|||+.++++|++|+++|+++++|+|++||+||++||++||++|+|+|+|++.+ |++|+|+|++.|+++....++ ++|+
T Consensus 309 avt~~~~~~y~~l~~~i~~s~v~~l~~dSsni~~li~~~y~~i~s~v~l~~~~~p~~~~v~~~s~C~~~~~~~~~-~~C~ 387 (690)
T 3fcs_B 309 AVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNEVIPGL-KSCM 387 (690)
T ss_dssp EEEGGGHHHHHHHHHHSTTCEEEEECTTCTTHHHHHHHHHHHHTTCEEEEEESCCTTEEEEEEEECSTTCEEETC-CEEC
T ss_pred EEeCCchhhHHHHHhhcCCceeeeeccccHHHHHHHHHHHHhhhcceeeeccCCCCcceEEEEeecCCCCcccCC-Cccc
Confidence 99999999999999999999999999999999999999999999999999877 999999999999987655443 5899
Q ss_pred CcccCcEEEEEEEEEeccCCCCCcccceEEEEEecccceeEEEecccCCCccCCCCCCCCCCCCCCCCC-CCeEEeCcee
Q psy12966 394 GLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCS-GFGTFKCGLC 472 (741)
Q Consensus 394 ~v~~g~~V~F~v~v~~~~Cp~~~~~~~~~~~I~~~g~~e~l~v~l~~~C~C~Ce~~~~~~~~~~s~~Cs-g~G~c~cG~C 472 (741)
||++|++|+|+|+|++++||... .++|.|+|+||+|+|+|+|+++|+|+|... .-.|+..|+ ++|.|.+|.|
T Consensus 388 ~v~~g~~v~F~v~v~~~~Cp~~~---~~~~~i~p~G~~e~l~v~v~~~C~C~C~~~----pc~n~~~C~~g~G~~~~G~C 460 (690)
T 3fcs_B 388 GLKIGDTVSFSIEAKVRGCPQEK---EKSFTIKPVGFKDSLIVQVTFDCDCACQAQ----AEPNSHRCNNGNGTFECGVC 460 (690)
T ss_dssp SCCTTCEEEEEEEEEECSCCSSS---EEEEEEEETTCSCCEEEEEEECCSCGGGTT----CCTTCTTTTTTSEEEETTEE
T ss_pred ccccCCeEEEEEEEEeecCCCCC---ceEEEEeecCCccceeeecccccccCCcCC----CCCCCCcccCCCCeEeCCce
Confidence 99999999999999999999432 479999999999999999999999999976 466888999 9999999999
Q ss_pred eeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceecCCCCccC-CCCCceecCcccccee----ecCCCC---
Q psy12966 473 ECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLCNQKSLD-NIVNVIISHVIVTTEC----CVLDLN--- 544 (741)
Q Consensus 473 ~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~cG~C~C~-~~~~~~~G~~~~~Cec----C~~~~g--- 544 (741)
.|.+||+|..|+|+.+.........|...++ ...|+++|+|++|+|.|. .+..+|+|.+ ||+ |+...+
T Consensus 461 ~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~-~~~Cs~~G~C~~g~C~C~~~~~~Gy~G~~---Ce~~~~~C~~~~~~~C 536 (690)
T 3fcs_B 461 RCGPGWLGSQCECSEEDYRPSQQDECSPREG-QPVCSQRGECLCGQCVCHSSDFGKITGKY---CECDDFSCVRYKGEMC 536 (690)
T ss_dssp EECTTCCSSSSCCSCC------CCCCSSSSS-SCGGGGSEEECSSSEEECCCSSCCCBSTT---SCBCSSCCCBSSSSBG
T ss_pred EeCCCccCCceeeccCccCCccCCcCCCCCC-CCCCCCCCEEECCeeEeecCCCCCeeCCC---cCcccCcCcCCCCCCC
Confidence 9999999999999764332223345876554 468999999999999995 3334899999 997 986433
Q ss_pred -CceeeecCceEecCCcee-ccc----cccCCCCccccCccccCCccccccccccccccccccCCCCCccc--CCCCC-c
Q psy12966 545 -TVGACVASAIVKTAGLVQ-RVT----VAPLMTPVYLLREERCARARESVSAVCANVLKIAREDIPAGSAR--NARPV-L 615 (741)
Q Consensus 545 -G~G~C~cg~C~C~~G~~G-~~~----~~~C~~~~~~~~~~~Csg~G~C~cG~C~~~~~C~~~~~~gy~G~--e~Cp~-~ 615 (741)
+||+|.++.|.|.+||+| .|. ...|.... + ..|+++|+|++|+|. | ..+||+|. +.|+. +
T Consensus 537 ~~~G~C~~g~C~C~~Gy~G~~CeC~~~~~~C~~~~---g-~~C~~~G~C~~g~C~----C---~~~Gy~G~~Ce~C~~C~ 605 (690)
T 3fcs_B 537 SGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSN---G-LLCSGRGKCECGSCV----C---IQPGSYGDTCEKCPTCP 605 (690)
T ss_dssp GGSEEEETTEEEECTTEESSSSCEECCCTTTBCTT---S-SBTSSSCEEETTEEE----C---CSTTCBSTTSCBCTTSC
T ss_pred CCCCEecCCeeECcCCCcCCCCccCCCCCcccCCC---C-CCCCCCCEEeCCEEE----C---CCCCccCCCcCcCCCCC
Confidence 799999999999999999 343 56786533 3 689999999999999 9 46899999 77877 7
Q ss_pred CCCCCCCceeeecccccccc--cc-----------cCcCCCC----CCCceeecCCCcEEEEEEEEcCCCcEEEEEeccC
Q psy12966 616 EDVQEFKNCIQCQVLQDRTI--VR-----------GGNEAKD----ENLCVYFDEDECKFEYVYWYDAQGKIHLRAQQER 678 (741)
Q Consensus 616 ~~C~~~~~Cv~C~~~~~g~~--~~-----------~v~~~~~----~~~C~~~~~d~C~~~f~y~~~~~~~~~i~v~~~~ 678 (741)
++|..++.|++|+.+.+|++ .+ +|++++. +.+|+++|+|+|+|+|+|..++++++.|+|++++
T Consensus 606 ~~C~~~g~Cv~C~~g~tG~~C~~~~C~~~C~~~~~~v~~~~~~~~~~~~C~~~d~~~C~~~f~~~~~~~~~~~~~v~~~~ 685 (690)
T 3fcs_B 606 DACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNCTYKNEDDCVVRFQYYEDSSGKSILYVVEEP 685 (690)
T ss_dssp CTTTSCCGGGTTTTTCCSSSSSSSCSTTTCCCEEECCCCCSCSSSSSCEEEEECTTSEEEEEECBCSSSCBCEEECCSSC
T ss_pred CCCCCCCCcccCCCCCccCCCCccccccccCCccEEeeecccCCCccCCCccCCCCCeEEEEEEEECCCCcEEEEEeccC
Confidence 89999999999999999984 11 3455432 2579999999999999998777889999999999
Q ss_pred CCCCC
Q psy12966 679 ECPPH 683 (741)
Q Consensus 679 ~Cp~~ 683 (741)
+||++
T Consensus 686 ~Cp~~ 690 (690)
T 3fcs_B 686 ECCKG 690 (690)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 99874
No 2
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=100.00 E-value=1e-147 Score=1285.39 Aligned_cols=620 Identities=33% Similarity=0.643 Sum_probs=557.4
Q ss_pred CCCCCccccccCCCC---C--CCCCCCcC-CCCCcccCCCCCCceecCCcceeEeecccccccccccCCcccCCCCCCCC
Q psy12966 2 RICPVCPTYNSSEYG---D--KKRCFQPS-LNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSSSS 75 (741)
Q Consensus 2 ~~~p~CaWC~~~~f~---~--~~RC~~~~-l~~~~~~~gC~~~~i~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 75 (741)
+++|.||||++++|. + ..|||+++ |+ ++||++++|++|++.++|++|+||+.
T Consensus 16 ~~~p~CaWC~~~~f~~~~~~~~~RCd~~~~l~----~~gC~~~~i~~p~s~~~~~~~~~l~~------------------ 73 (687)
T 3k6s_B 16 ESGPGCTWCQKLNFTGPGDPDSIRCDTRPQLL----MRGCAADDIMDPTSLAETQEDHNGGQ------------------ 73 (687)
T ss_dssp TTCTTCEEECCTTCSCTTCCSGGGEECHHHHH----HHTCCSTTEECCCCBCCBCCCCSSSC------------------
T ss_pred CCCCCccccCCcccCCCCCcCcCCCCCHHHHh----HCCCCHhheeCCCCeeEEeccCCCCC------------------
Confidence 579999999999993 1 46999999 88 78999999999999999999999863
Q ss_pred CCCCCCCCCCCCCCCceeecceeEEEEEeeCccEEEEEEEeccCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHh
Q psy12966 76 SGSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQE 155 (741)
Q Consensus 76 ~~~~~~~~~~~~~~~~~qi~Pq~v~~~LR~G~~~~~~~~~~~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~ 155 (741)
.||+||+|+|+||||++++|+|+|+++++||||||||||+|+||+|||++||+||.+|+++|++
T Consensus 74 ----------------~qi~Pq~~~~~Lr~g~~~~f~~~~~~~~~ypvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~ 137 (687)
T 3k6s_B 74 ----------------KQLSPQKVTLYLRPGQAAAFNVTFRRAKGYPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNE 137 (687)
T ss_dssp ----------------SSSBCSCBEEEECTTSCEEEEEEECCCCCCCCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHS
T ss_pred ----------------ccccCcEEEEEEecCCeeEEEEEEeccCCCceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 4999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCceeEEeeEeecccccCccccCcccccCCCC----CCCCCcceeeeecCCccHHHHHHhccceeeccCCCCCcchHHH
Q psy12966 156 VTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCA----GCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDA 231 (741)
Q Consensus 156 ~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~----~c~~~f~f~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldA 231 (741)
+|+++|||||+|||||++||++|+|++|+|||. .|+|||+|||+|+||+|+++|+++|++++||||+|+|||+|||
T Consensus 138 ~t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~~~f~f~~~l~lt~~~~~F~~~v~~~~isgn~D~PE~g~dA 217 (687)
T 3k6s_B 138 ITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPPFAFRHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDA 217 (687)
T ss_dssp SCCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCCCCCSCEEEEEEESCSHHHHHHHHTSCCCCCSSSSCCHHHH
T ss_pred hCcCcEEeeEEeeccccCCccccCchhccCCCCCCCCCcCCcccceeecccCCCHHHHHHHHhhccccCCCCCCchHHHH
Confidence 999999999999999999999999999999993 6999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCcc
Q psy12966 232 IMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSIN 311 (741)
Q Consensus 232 l~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~ 311 (741)
|||||||+++||||+ |+|||||+|||+||+|||||||||++||||+|||+ +|+|++++++|||||+||+++|+++||+
T Consensus 218 l~qa~vc~~~igWr~-a~rllV~~TDa~~H~agDg~l~gi~~pndg~Chl~-~~~y~~s~~~DyPS~~ql~~~l~~~~I~ 295 (687)
T 3k6s_B 218 MMQVAACPEEIGWRN-VTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLE-DNLYKRSNEFDYPSVGQLAHKLAENNIQ 295 (687)
T ss_dssp HHHHTTCHHHHCCCS-SCCEEEEECSSCCCCTTGGGGGTCCCCCCSCCCCS-SSBCSSGGGSCCCCGGGHHHHHHHTTCB
T ss_pred HHHHhhcccccCCcc-ceEEEEEECCCccccCCCccccceecCCCCccccC-CCccccccccCCCCHHHHHHHHHHcCCe
Confidence 999999999999998 99999999999999999999999999999999995 8899999999999999999999999999
Q ss_pred EEEEEecchhhhHHHHhhcccCceeeeccCCcchHHHHHHHHhhhccceEEeeeCC-CCceEEEEEeecCCCCCCCCC-C
Q psy12966 312 LIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKDGPSKP-T 389 (741)
Q Consensus 312 ~Ifavt~~~~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI~~aY~~i~s~v~l~~~~-~~~~~v~~~s~C~~~~~~~~~-~ 389 (741)
||||||+.++++|++|+++|+++++|+|++||+||++||++||++|+|+|+|++.. |++|+|+|++.|+++...+++ +
T Consensus 296 ~ifavt~~~~~~y~~l~~~i~~s~v~~L~~dSsni~~li~~ay~~i~s~v~l~~~~~p~~~~~~~~s~c~~~~~~~~~~~ 375 (687)
T 3k6s_B 296 PIFAVTSRMVKTYEKLTEIIPKSAVGELSEDSSNVVQLIKNAYNKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPR 375 (687)
T ss_dssp CCEEECGGGHHHHHHHHHHSSSCCEEECCTTCCSCGGGTTTHHHHHSSCCCCCBSCCCTTEEEECCBCCSSSCCBCSCSS
T ss_pred EEEEEeccchhhHHHHHhhcCCceeeeeccccHHHHHHHHHHHHhhhceeEEeccCCCCceEEEEEeeCCCCCccCcccC
Confidence 99999999999999999999999999999999999999999999999999999988 999999999999988765543 5
Q ss_pred CCCCCcccCcEEEEEEEEEeccCCCCCcccceEEEEEecccceeEEEecccCCCccCCCCCCCCCCCCCCCCCCCeEEeC
Q psy12966 390 AKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKC 469 (741)
Q Consensus 390 ~~C~~v~~g~~V~F~v~v~~~~Cp~~~~~~~~~~~I~~~g~~e~l~v~l~~~C~C~Ce~~~~~~~~~~s~~Csg~G~c~c 469 (741)
++|++|++|++|+|+|+|++++||. .++|.|+|+||.|+++|+++++|+|+|+.. .. ++..|+++|+|.+
T Consensus 376 ~~C~~v~ig~~v~F~v~v~~~~Cp~-----~~~~~i~p~Gf~~~~~v~~~~~C~C~C~~~----~~-~s~~Cs~~G~C~~ 445 (687)
T 3k6s_B 376 GDCDGVQINVPITFQVKVTATECIQ-----EQSFVIRALGFTDIVTVQVLPQCECRCRDQ----SR-DRSLCHGKGFLEC 445 (687)
T ss_dssp CCCTTCCSSCCEEEEEEEEESSCCC-----SEEEEBCCTTCCCCCEEEEEECCCCCCCCS----SS-CSSTGGGSEEESS
T ss_pred CcccceecCCeEEEEEEEEEecCCC-----CCeEEEccccCCCceeccccccccccCccC----CC-CCCCCCCCCEEeC
Confidence 6899999999999999999999985 258999999999999999999999999976 33 7889999999999
Q ss_pred ceeeeCCCccCCcccccCCCCCCc-CcccCccCCCCccccCCCceecCCCCccC-C--CCCceecCcccccee----ecC
Q psy12966 470 GLCECDQSHFGRRCECDAESSQGI-TSTGCKADANSTMECSGRGNCLCNQKSLD-N--IVNVIISHVIVTTEC----CVL 541 (741)
Q Consensus 470 G~C~C~~G~~G~~CeC~~~~~~~~-~~~~C~~~~~~~~~Csg~G~C~cG~C~C~-~--~~~~~~G~~~~~Cec----C~~ 541 (741)
|+|.|.+||+|..|+|+....... ....|...++ +..|+++|+|.+|+|.|. . ++.+|+|.+ ||+ |+.
T Consensus 446 g~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~-~~~Cs~~G~C~~G~C~C~~~~~~~~G~~G~~---Ce~~~~~C~~ 521 (687)
T 3k6s_B 446 GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNN-SIICSGLGDCVCGQCLCHTSDVPGKLIYGQY---CECDTINCER 521 (687)
T ss_dssp SSEEECSSEESTTSCEESSSCCCSGGGSTTSSSTT-SCGGGSSEEEETTEEEECCCCSTTCCEESTT---SCEESSCSCE
T ss_pred CEeEcCCCCcCCcccccCCcCCccccCCCCCCCCC-CCcCCCCCEEeCCEEEcCCCCCCCCCccccc---cccccccccC
Confidence 999999999999999986543322 3345886554 468999999999999995 2 225899999 996 886
Q ss_pred CC----CC--ceeeecCceEecCCcee-ccc----cccCCCCccccCccccCCccccccccccccccccccCCCCCccc-
Q psy12966 542 DL----NT--VGACVASAIVKTAGLVQ-RVT----VAPLMTPVYLLREERCARARESVSAVCANVLKIAREDIPAGSAR- 609 (741)
Q Consensus 542 ~~----gG--~G~C~cg~C~C~~G~~G-~~~----~~~C~~~~~~~~~~~Csg~G~C~cG~C~~~~~C~~~~~~gy~G~- 609 (741)
.+ ++ ||+|.+|+|.|.+||+| .|. ...|.... + ..|+++|+|++|+|. | .+||+|+
T Consensus 522 ~~~~~C~~~~~G~C~~g~C~C~~G~~G~~Cec~~~~~~C~~~~---g-~~Cs~~G~C~~g~C~----C----~~Gy~G~~ 589 (687)
T 3k6s_B 522 YNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPR---R-VECSGRGRCRCNVCE----C----HSGYQLPL 589 (687)
T ss_dssp ETTEETSHHHHEEEETTEEEECTTCCSTTSCSCCSSCTTBCTT---C-SBTSSSCCBCSSCBC----C----STTCCTTT
T ss_pred CCCcCcCCCCCCeEECCEEEcCCCCcCCCCccCCCCCCCCCCC---C-CCCCCCCcCCCCEEE----C----CCCCcCCC
Confidence 43 36 99999999999999999 343 46776543 3 689999999999999 9 8999999
Q ss_pred -CCCCC-cCCCCCCCceeeecccccccccc--------c-CcCCCC-CCCceeecCCCcEEEEEEEEc-CCCcEEEEEec
Q psy12966 610 -NARPV-LEDVQEFKNCIQCQVLQDRTIVR--------G-GNEAKD-ENLCVYFDEDECKFEYVYWYD-AQGKIHLRAQQ 676 (741)
Q Consensus 610 -e~Cp~-~~~C~~~~~Cv~C~~~~~g~~~~--------~-v~~~~~-~~~C~~~~~d~C~~~f~y~~~-~~~~~~i~v~~ 676 (741)
+.|++ +++|..++.|++|+.+.+|++.+ . +.+... +.+|+++|+|+|+|+|+|..+ ..+++.|+|++
T Consensus 590 Ce~c~~C~~~C~~~g~Cv~C~~~~~G~~~~~C~~~C~~~~~~~~~~~~~~C~~~d~d~C~~~f~~~~~~~~~~~~~~v~~ 669 (687)
T 3k6s_B 590 CQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDE 669 (687)
T ss_dssp TCCCTTSCCCCTTTHHHHTTTTSCSCCCSSCSSSSCCCCBCCSSCCCSSCEEEECSSSCEEEEEECCCSSTTCCBEEECS
T ss_pred CCCCCCCCcccCCCCCCCcccCCCCCCCCcccccccCCcccccccCCCCcceEECCCCeEEEEEEEEcCCCCeEEEEEee
Confidence 88887 78999999999999999998643 1 111111 367999999999999999654 34568899999
Q ss_pred cCCCCCCCchh
Q psy12966 677 ERECPPHVYIL 687 (741)
Q Consensus 677 ~~~Cp~~~~~~ 687 (741)
++|||++||..
T Consensus 670 ~~~Cp~~~~~~ 680 (687)
T 3k6s_B 670 SRECVAGPDGC 680 (687)
T ss_dssp CCCCC------
T ss_pred cCCCCCCCCcc
Confidence 99999988753
No 3
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=100.00 E-value=2.1e-133 Score=1112.48 Aligned_cols=446 Identities=42% Similarity=0.796 Sum_probs=417.6
Q ss_pred CCCCCccccccCCCCC-CCCCCCcC-CCCCcccCCCCCCceecCCcceeEeecccccccccccCCcccCCCCCCCCCCCC
Q psy12966 2 RICPVCPTYNSSEYGD-KKRCFQPS-LNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSSSSSGSF 79 (741)
Q Consensus 2 ~~~p~CaWC~~~~f~~-~~RC~~~~-l~~~~~~~gC~~~~i~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 79 (741)
+.+|.||||++++|+. ..|||+++ |+ ++||++++|+||++++++++|+||+...+
T Consensus 18 ~~~p~CaWC~~~~f~~~~~RCd~~~~l~----~~gC~~~~i~~p~s~~~i~~~~pls~~~~------------------- 74 (472)
T 3t3p_B 18 AVSPMCAWCSDEALPLGSPRCDLKENLL----KDNCAPESIEFPVSEARVLEDRPLSDKGS------------------- 74 (472)
T ss_dssp HHCTTEEEECCSSCCTTSCSEEEHHHHH----HTTCCGGGEECCCCEEEEEECCCCCSCSS-------------------
T ss_pred CCCCCccccCCccCCCCCCCCCCHHHHH----HCCCCHHHeeCCCCceEEeeccccccccc-------------------
Confidence 4689999999999953 57999999 88 78999999999999999999999986410
Q ss_pred CCCCCCCCCCCceeecceeEEEEEeeCccEEEEEEEeccCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCc
Q psy12966 80 SSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSN 159 (741)
Q Consensus 80 ~~~~~~~~~~~~~qi~Pq~v~~~LR~G~~~~~~~~~~~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~ 159 (741)
| ...+++||+||+++|+||||++++|+|+|+++++||||||||||+|+||+|||++||+||.+|+++|+++|++
T Consensus 75 --~----~~~~~~Qi~Pq~v~l~LRpG~~~~f~v~~~~~~~ypvDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~ 148 (472)
T 3t3p_B 75 --G----DSSQVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSN 148 (472)
T ss_dssp --S----TTSCCCCEECCEEEEEECTTCEEEEEEEEECCSSCCEEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSC
T ss_pred --c----cccCcccccCcEEEEEecCCCcEEEEEEeecCCCCCceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 0 1245899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeeEeecccccCccccCccc-ccCCC----CCCCCCcceeeeecCCccHHHHHHhccceeeccCCCCCcchHHHHHH
Q psy12966 160 FRLGFGSFVDKVVMPYVSMVPKN-LLEPC----AGCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQ 234 (741)
Q Consensus 160 ~r~GfgsFvDk~~~P~~~~~p~~-l~~Pc----~~c~~~f~f~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~q 234 (741)
+|||||+|||||++||++++|++ |+||| ..|+|+|+|||+|+||+|+++|+++|++++||||+|+||||||||||
T Consensus 149 ~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~q 228 (472)
T 3t3p_B 149 LRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQ 228 (472)
T ss_dssp EEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTSCCCCCCSEEEEEEEESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHH
T ss_pred cEEEEEEeeccccCccccCChhhhhcCCCcccccCCCCCcceeEeeccCCCHHHHHHHHhhccccCCCCCCchHHHHHHH
Confidence 99999999999999999999999 99999 46999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEE
Q psy12966 235 AIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIF 314 (741)
Q Consensus 235 a~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~If 314 (741)
||||+++||||++|+|||||+|||+||+|||||||||++||||+|||+.+|+|++++++|||||+||+++|.|+||+|||
T Consensus 229 aavC~~~igWR~~a~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~nI~~IF 308 (472)
T 3t3p_B 229 ATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIF 308 (472)
T ss_dssp HHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTTCEEEE
T ss_pred HhcchhhcCCCCCceEEEEEECCCCcCcCCCccccceecCCCCceEECCCCcccccccCCCCCHHHHHHHHHhcCccEEE
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred EEecchhhhHHHHhhcccCceeeeccCCcchHHHHHHHHhhhccceEEeeeCC-CCceEEEEEeecCCCCCCCCCCCCCC
Q psy12966 315 AVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKDGPSKPTAKCD 393 (741)
Q Consensus 315 avt~~~~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI~~aY~~i~s~v~l~~~~-~~~~~v~~~s~C~~~~~~~~~~~~C~ 393 (741)
|||+.++++|++|+++|+++++|+|++||+|||+||++||++|+|+|+|++.+ |++|+|+|++.|+++...+++ ++|+
T Consensus 309 AVt~~~~~~Y~~L~~~ip~s~vg~L~~dSsNiv~LI~~aY~~i~s~V~l~~~~~p~~l~v~y~s~C~~~~~~~~~-~~C~ 387 (472)
T 3t3p_B 309 AVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNEVIPGL-KSCM 387 (472)
T ss_dssp EECGGGHHHHHHHHHTSTTCEEEECCTTSTTHHHHHHHHHHHHTTCEEEEEESCCTTEEEEEEEEETTTEEEETC-CEEC
T ss_pred EEeccchhHHHHHHHhCCCceeeeccccchhHHHHHHHHHHHhheEEEEeeCCCCCcEEEEEEeECCCCCccCCC-ccCC
Confidence 99999999999999999999999999999999999999999999999999877 999999999999988655543 5799
Q ss_pred CcccCcEEEEEEEEEeccCCCCCcccceEEEEEecccceeEEEecccCCCccCCCCCCCCCCCCCCCCC-CCeEEeCcee
Q psy12966 394 GLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCS-GFGTFKCGLC 472 (741)
Q Consensus 394 ~v~~g~~V~F~v~v~~~~Cp~~~~~~~~~~~I~~~g~~e~l~v~l~~~C~C~Ce~~~~~~~~~~s~~Cs-g~G~c~cG~C 472 (741)
||++|++|+|+|+|++.+||.. +.++|.|+|+||+|+|+|+|+++|+|+|+.+ ..++++.|+ |||++.||+|
T Consensus 388 ~v~ig~~v~F~v~v~~~~C~~~---~~~~~~i~p~gf~e~l~v~v~~~C~C~C~~~----~~~~s~~C~~g~G~~~CG~C 460 (472)
T 3t3p_B 388 GLKIGDTVSFSIEAKVRGCPQE---KEKSFTIKPVGFKDSLIVQVTFDCDCACQAQ----AEPNSHRCNNGNGTFECGVC 460 (472)
T ss_dssp SCCTTCEEEEEEEEEECSCCSS---SEEEEEEEETTCSCCEEEEEEECCSCGGGGG----CBTTCTTTTTTTEEEETTEE
T ss_pred CcccCCEEEEEEEEEeccCCCC---CceeEEEeecCCCceEEEEEeecccCCCCCC----CCCCCcccCCCCeeEeCCce
Confidence 9999999999999999999943 2479999999999999999999999999986 567899998 9999999999
Q ss_pred eeCCCccCCccc
Q psy12966 473 ECDQSHFGRRCE 484 (741)
Q Consensus 473 ~C~~G~~G~~Ce 484 (741)
.|++||.|+.||
T Consensus 461 ~C~~G~~G~~Ce 472 (472)
T 3t3p_B 461 RCGPGWLGSQCE 472 (472)
T ss_dssp EECTTC------
T ss_pred ECcCCCCCCCCC
Confidence 999999999997
No 4
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=100.00 E-value=1.3e-132 Score=1108.62 Aligned_cols=445 Identities=42% Similarity=0.805 Sum_probs=349.3
Q ss_pred CCCCCccccccCCCC---C--CCCCCCcC-CCCCcccCCCCCCceecCCcceeEeecccccccccccCCcccCCCCCCCC
Q psy12966 2 RICPVCPTYNSSEYG---D--KKRCFQPS-LNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSSSS 75 (741)
Q Consensus 2 ~~~p~CaWC~~~~f~---~--~~RC~~~~-l~~~~~~~gC~~~~i~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 75 (741)
+.+|.||||++++|. + ..|||+++ |+ .+||++++|++|+++++|++|+||++..
T Consensus 37 ~~~p~CaWC~~~~f~~~~~~~~~RCd~~~~L~----~~GC~~~~I~~P~s~~~i~~~~pls~~~---------------- 96 (503)
T 3v4v_B 37 LSHPSCAWCKQLNFTASGEAEARRCARREELL----ARGCPLEELEEPRGQQEVLQDQPLSQGA---------------- 96 (503)
T ss_dssp ------------------------------------------------CCEEEECCCCCCBCTT----------------
T ss_pred CCCCCcccccCcccCCCCCcCcCCCCCHHHHh----HCCCCHHHeeCCCCeeEEeecccCcccc----------------
Confidence 568999999999993 1 57999999 88 7899999999999999999999998641
Q ss_pred CCCCCCCCCCCCCCCceeecceeEEEEEeeCccEEEEEEEeccCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHh
Q psy12966 76 SGSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQE 155 (741)
Q Consensus 76 ~~~~~~~~~~~~~~~~~qi~Pq~v~~~LR~G~~~~~~~~~~~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~ 155 (741)
.+.+++||+||+|+|+||||++++|+|+|+++++||||||||||+|+||+|||++||+||.+|+++|++
T Consensus 97 -----------~~~~~~Qi~PQ~v~l~LRpG~~~~f~v~~~~~~~yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~ 165 (503)
T 3v4v_B 97 -----------RGEGATQLAPQRVRVTLRPGEPQQLQVRFLRAEGYPVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQE 165 (503)
T ss_dssp -----------TSSSCBCEECCEEEEECBTTBCEEEEEEEECCSSCCEEEEEEEECSGGGHHHHHHHHHSSHHHHHHHTT
T ss_pred -----------ccCCcceecCceEEEEecCCCcEEEEEEEEccCCCceeEEEEEecCcchhhHHHHHHHHHHHHHHHHHh
Confidence 123589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCceeEEeeEeecccccCccccCcccccCCCC----CCCCCcceeeeecCCccHHHHHHhccceeeccCCCCCcchHHH
Q psy12966 156 VTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCA----GCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDA 231 (741)
Q Consensus 156 ~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~----~c~~~f~f~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldA 231 (741)
+|+++|||||+|||||++||++|+|++|+|||. .|+|+|+|||+|+||+|+++|+++|++++||||+|+|||||||
T Consensus 166 ~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSGnlD~PEggfDA 245 (503)
T 3v4v_B 166 VTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLERCQSPFSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDA 245 (503)
T ss_dssp TCSCEEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSCCCCCCSEEEEEEEESCSHHHHHHHTTCCCCCCSSSSBCHHHH
T ss_pred hCcCcEEeeeeecccccCCcccCCHHHhcCCCcCCCCCCCCCcceEEEEEecCCHHHHHHHHhhcCccCCCCCCchHHHH
Confidence 999999999999999999999999999999994 5999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCcc
Q psy12966 232 IMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSIN 311 (741)
Q Consensus 232 l~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~ 311 (741)
|||||||+++||||+ ++|||||+|||+||+|||||||||++||||+|||+.+|+|++++++|||||+||+++|.++||+
T Consensus 246 lmQaavC~~~IgWR~-a~rllV~~TDA~fH~agDgkLaGIv~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~ennI~ 324 (503)
T 3v4v_B 246 ILQAALCQEQIGWRN-VSRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAANIQ 324 (503)
T ss_dssp HHHHHHCHHHHTCCS-SEEEEEEEESSCBCCTTGGGTTTCCSCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHTEE
T ss_pred HHHHhhcccccCCCc-ceEEEEEECCCCcCcCCCccccceecCCCCCeEECCCCccccccccCCCCHHHHHHHHHhcCCe
Confidence 999999999999996 9999999999999999999999999999999999989999999999999999999999999999
Q ss_pred EEEEEecchhhhHHHHhhcccCceeeeccCCcchHHHHHHHHhhhccceEEeeeCC-CCceEEEEEeecCCCCCCCCC--
Q psy12966 312 LIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKDGPSKP-- 388 (741)
Q Consensus 312 ~Ifavt~~~~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI~~aY~~i~s~v~l~~~~-~~~~~v~~~s~C~~~~~~~~~-- 388 (741)
||||||+.++++|++|+++|+++++|+|++||+|||+||++||++|+|+|+|++++ |++|+|+|++.|+++....+.
T Consensus 325 ~IFAVt~~~~~~Y~~L~~~ip~s~vg~Ls~dSsNiv~LI~~aY~~i~S~V~l~~~~~p~~l~v~y~s~C~~~~~~~~~~~ 404 (503)
T 3v4v_B 325 PIFAVTSAALPVYQELSKLIPKSAVGELSEDSSNVVQLIMDAYNSLSSTVTLEHSSLPPGVHISYESQCEGPEKREGKAE 404 (503)
T ss_dssp EEEEECSSSHHHHHHHHTTSTTCEEEECCTTSCTHHHHHHHHHHHHHTCEEEECCCCCTTEEEEBCEECSSSCCCCCCCB
T ss_pred EEEEEcccchhHHHHHHHhCCCceeeEccccchhHHHHHHHHHHHhheEEEEecCCCCCceEEEEEEecCCCCccCcccc
Confidence 99999999999999999999999999999999999999999999999999999988 999999999999876543322
Q ss_pred -CCCCCCcccCcEEEEEEEEEeccCCCCCcccceEEEEEecccceeEEEecccCCCccCCCCCCCCCCCCCCCCC-CCeE
Q psy12966 389 -TAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCS-GFGT 466 (741)
Q Consensus 389 -~~~C~~v~~g~~V~F~v~v~~~~Cp~~~~~~~~~~~I~~~g~~e~l~v~l~~~C~C~Ce~~~~~~~~~~s~~Cs-g~G~ 466 (741)
+++|+||++|++|+|+|+|++++||... ++|.|+|+||+|+|+|+|+++|+|+|+.. .++++.|+ |||+
T Consensus 405 ~~~~C~~v~ig~~v~F~v~v~~~~C~~~~----~~~~i~p~Gf~e~l~V~v~~~C~C~C~~~-----~~~s~~C~~g~G~ 475 (503)
T 3v4v_B 405 DRGQCNHVRINQTVTFWVSLQATHCLPEP----HLLRLRALGFSEELIVELHTLCDCNCSDT-----QPQAPHCSDGQGH 475 (503)
T ss_dssp SSEEECSCCTTCEEEEEEEEEECSCCSSC----CEEEEEEETSSCEEEEECCCC--------------------------
T ss_pred cCCcccCcccCCEEEEEEEEEeecCCCCC----cEEEEccCCCCceEEEEEecccCCCCCCC-----CCCCcccCCCCee
Confidence 3579999999999999999999998532 58999999999999999999999999864 46788997 9999
Q ss_pred EeCceeeeCCCccCCcccccC
Q psy12966 467 FKCGLCECDQSHFGRRCECDA 487 (741)
Q Consensus 467 c~cG~C~C~~G~~G~~CeC~~ 487 (741)
+.||+|.|++||.|+.|||..
T Consensus 476 ~~CG~C~C~~G~~G~~CeC~~ 496 (503)
T 3v4v_B 476 LQCGVCSCAPGRLGRLCESRG 496 (503)
T ss_dssp ---------------------
T ss_pred EeCCceECcCCCcCCCCCCCC
Confidence 999999999999999999965
No 5
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=100.00 E-value=2.1e-126 Score=1049.53 Aligned_cols=419 Identities=44% Similarity=0.775 Sum_probs=383.8
Q ss_pred CCCCCccccccCCCCC-----CCCCCCcC-CCCCcccCCCCCCceecCCcceeEeecccccccccccCCcccCCCCCCCC
Q psy12966 2 RICPVCPTYNSSEYGD-----KKRCFQPS-LNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSSSS 75 (741)
Q Consensus 2 ~~~p~CaWC~~~~f~~-----~~RC~~~~-l~~~~~~~gC~~~~i~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 75 (741)
+.+|.||||++++|++ ..|||+++ |+ .+||++++|+||++++++++|+||++..++ .
T Consensus 20 ~~~p~CaWC~~~~f~~~g~~~~~RCd~~~~L~----~~gC~~~~I~~P~s~~~i~~~~pls~~~~~---------~---- 82 (454)
T 3vi3_B 20 QAGPNCGWCTNSTFLQEGMPTSARCDDLEALK----KKGCPPDDIENPRGSKDIKKNKNVTNRSKG---------T---- 82 (454)
T ss_dssp TTCSSCCCBC-------------CCSCHHHHT----TSSCCTTTBCCCCCEEEEEECCCCCCCTTC---------T----
T ss_pred CCCCCccccCCcccCCCCCcCcCCCCCHHHHh----HCCCCHHHeeCCCCceEEeccccCcccccc---------c----
Confidence 5789999999999932 47999999 88 789999999999999999999999864210 0
Q ss_pred CCCCCCCCCCCCCCCceeecceeEEEEEeeCccEEEEEEEeccCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHh
Q psy12966 76 SGSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQE 155 (741)
Q Consensus 76 ~~~~~~~~~~~~~~~~~qi~Pq~v~~~LR~G~~~~~~~~~~~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~ 155 (741)
+......+++||+||+++|+||||++++|+|+|+++++||||||||||+|+||+|||++||+||.+|+++|++
T Consensus 83 -------~~~~~~~~~~Qi~PQ~v~l~LRpG~~~~f~v~~~~~~~yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~ 155 (454)
T 3vi3_B 83 -------AEKLKPEDIHQIQPQQLVLRLRSGEPQTFTLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRR 155 (454)
T ss_dssp -------TCCCCTTTCCCEECCEEEEEECTTCCCCEEEEEECCSCCCEEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTT
T ss_pred -------ccccccCCCceecCceEEEEecCCCeEEEEEEEecCCCCceeEEEEecCCcchhhHHHHHHHHHHHHHHHHHh
Confidence 0000123589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCceeEEeeEeecccccCccccCcccccCCCC---CCCCCcceeeeecCCccHHHHHHhccceeeccCCCCCcchHHHH
Q psy12966 156 VTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCA---GCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAI 232 (741)
Q Consensus 156 ~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~---~c~~~f~f~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl 232 (741)
+|+++|||||+|||||++||++|+|++++|||. .|+|||+|||+|+||+|+++|+++|++++||||+|+||||||||
T Consensus 156 ~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c~~~f~fr~~l~LT~d~~~F~~~V~~~~isGn~D~PEgg~DAl 235 (454)
T 3vi3_B 156 ITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTTPFSYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAI 235 (454)
T ss_dssp TCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHH
T ss_pred cCCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCCCCCcceeeeeecCCCHHHHHHHHhhccccCCCcCCchhHHHH
Confidence 999999999999999999999999999999995 79999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccE
Q psy12966 233 MQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINL 312 (741)
Q Consensus 233 ~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~ 312 (741)
||||||+++||||+ |+|||||+|||+||+|||||||||++||||+|||+ +|+|++++++|||||+||+++|.|+||+|
T Consensus 236 ~Qaavc~~~igWR~-a~rllV~~TDa~fH~agDgkL~GIv~PNDg~CHL~-~~~Yt~s~~~DYPSv~ql~~~l~e~nI~~ 313 (454)
T 3vi3_B 236 MQVAVCGSLIGWRN-VTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLE-NNMYTMSHYYDYPSIAHLVQKLSENNIQT 313 (454)
T ss_dssp HHHHHCHHHHTCCS-SEEEEEEEESSCBCCTTTTGGGTCCSCCCCCCCEE-TTEECCTTTSCCCCHHHHHHHHHHTTEEE
T ss_pred HHHhccccccCCcc-ceEEEEEECCCCcCcCCCccccceecCCCCccEeC-CCcccccccCCCCCHHHHHHHHHhcCCcE
Confidence 99999999999998 99999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred EEEEecchhhhHHHHhhcccCceeeeccCCcchHHHHHHHHhhhccceEEeeeCC-CCceEEEEEeecCCCCCCCCC-CC
Q psy12966 313 IFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKDGPSKP-TA 390 (741)
Q Consensus 313 Ifavt~~~~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI~~aY~~i~s~v~l~~~~-~~~~~v~~~s~C~~~~~~~~~-~~ 390 (741)
|||||+.++++|++|+++||++++|+|++||+|||+||++||++|+|+|+|++++ |++|+|+|++.|+++....++ ++
T Consensus 314 IFAVt~~~~~~Y~~L~~~ip~s~vg~Ls~dSsNiv~LI~~aY~~i~S~V~l~~~~~p~~l~v~y~s~C~~~~~~~~~~~~ 393 (454)
T 3vi3_B 314 IFAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGVTISYKSYCKNGVNGTGENGR 393 (454)
T ss_dssp EEEEEGGGHHHHHHHHHHSTTEEEEEECTTCTTHHHHHHHHHHHHHTCEEEEECCCCTTEEEEEEEECGGGCEEEGGGGG
T ss_pred EEEEcCccchHHHHHHHhCCCceeeEccccchhHHHHHHHHHHHhheEEEEecCCCCCceEEEEEeecCCCCccCCccCC
Confidence 9999999999999999999999999999999999999999999999999999888 999999999999987654432 35
Q ss_pred CCCCcccCcEEEEEEEEEeccCCCCCcccceEEEEEecccceeEEEecccCCCccCCCC
Q psy12966 391 KCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVD 449 (741)
Q Consensus 391 ~C~~v~~g~~V~F~v~v~~~~Cp~~~~~~~~~~~I~~~g~~e~l~v~l~~~C~C~Ce~~ 449 (741)
+|+||++|++|+|+|+|++++||.. +.++|.|+|+||+|+|+|+|+++|+|+|+.+
T Consensus 394 ~C~~v~ig~~v~F~v~v~~~~Cp~~---~~~~~~i~p~Gf~e~l~V~v~~~C~C~C~~~ 449 (454)
T 3vi3_B 394 KCSNISIGDEVQFEISITSNKCPKK---DSDSFKIRPLGFTEEVEVILQYICECEGGLE 449 (454)
T ss_dssp EECCCCTTCEEEEEEEEEESSCCCS---SEEEEEEEETTCCCCEEEEEEECCSCC----
T ss_pred CCCCccCCCEEEEEEEEEeecCCCC---CCceEEEEecCCCceEEEEEeecccCCCCCC
Confidence 8999999999999999999999953 3479999999999999999999999999976
No 6
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=100.00 E-value=3.8e-67 Score=531.74 Aligned_cols=212 Identities=39% Similarity=0.729 Sum_probs=207.9
Q ss_pred CCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeee
Q psy12966 120 DYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNV 199 (741)
Q Consensus 120 ~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~ 199 (741)
+||||||||||+|+||++||++||+++.+|+++|++++.++|+|||+|||| +|+|+
T Consensus 1 ~~pvDl~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk------------------------~~~~~ 56 (212)
T 2iue_A 1 DNSVDLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM------------------------TFQHI 56 (212)
T ss_dssp CCCEEEEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS------------------------CEEEE
T ss_pred CCceEEEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC------------------------cceec
Confidence 689999999999999999999999999999999999999999999999997 36899
Q ss_pred ecCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcc
Q psy12966 200 MSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLC 279 (741)
Q Consensus 200 l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~C 279 (741)
++||+|.++|+++|++++||||+|.||++|||||||++|.++||||+ ++|+|||+|||+||+||||+|+||++||||+|
T Consensus 57 l~lT~d~~~F~~~v~~~~vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~c 135 (212)
T 2iue_A 57 LKLTADSSQFQRELRKQLVSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRC 135 (212)
T ss_dssp EEEESCHHHHHHHHHTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCCTTGGGGGTCCSCCCSSC
T ss_pred CCcCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccccCCccccccccCCcccc
Confidence 99999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred cccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecchhhhHHHHhhcccCceeeeccCCcchHHHHHHHHhhhc
Q psy12966 280 HMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKI 357 (741)
Q Consensus 280 hl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~~~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI~~aY~~i 357 (741)
||+ +|+|++++.+||||++|++++|.++||+||||||+...+.|++|+++|+++.+++|++||+||++||++||++|
T Consensus 136 hl~-~g~y~~s~~~Dyps~~q~~~~l~~~~i~~ifavt~~~~~~Y~~l~~~i~~s~v~~L~~dSsni~~li~~~y~~~ 212 (212)
T 2iue_A 136 HLD-DGMYRSRGEPDYQSVVQLASKLAENNIQPIFVVPSRMVKTYEKLTTFIPKLTIGELSDDSSNVAQLIRNAYSKL 212 (212)
T ss_dssp CBS-SSBBGGGGSSCCCCHHHHHHHHHHHTCEEEEEEEHHHHHHHHHHHHHSTTCEEEEESSCCHHHHHHHHHHHHTC
T ss_pred ccC-CCeeccCcccCCCCHHHHHHHHHhcCCcEEEEEccchhHHHHHHHHHcccceeeeecCCcHHHHHHHHHHHhhC
Confidence 998 88999999999999999999999999999999999999999999999999999999999999999999999986
No 7
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=100.00 E-value=2e-47 Score=402.23 Aligned_cols=171 Identities=30% Similarity=0.658 Sum_probs=144.8
Q ss_pred hhhccceEEeeeCC-CCceEEEEEeecCCCCCCCCC-CCCCCCcccCcEEEEEEEEEeccCCCCCcccceEEEEEecccc
Q psy12966 354 YNKISSSVEMKDTS-SSAVKVTYHSKCLNKDGPSKP-TAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGID 431 (741)
Q Consensus 354 Y~~i~s~v~l~~~~-~~~~~v~~~s~C~~~~~~~~~-~~~C~~v~~g~~V~F~v~v~~~~Cp~~~~~~~~~~~I~~~g~~ 431 (741)
|++|+++|+|++.. |++|+|+|++.|.++....+. +++|+|+++|++|+|+|+|++.+||.. ++|.|+|+||+
T Consensus 99 y~~~~s~v~i~~~~~pe~l~v~~~s~C~~~~~~~~~~~~~C~~~~iG~~v~f~v~v~~~~C~~~-----~~~~I~p~G~~ 173 (280)
T 2p26_A 99 RAKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQE-----QSFVIRALGFT 173 (280)
T ss_dssp CSSCCSSEEEEECCCCTTEEEEEEEECSSSCEEEEESSEEESSCCTTCCEEEEEEEEESSCCCC-----EEEEEEETTCC
T ss_pred ecccccEEEEeecCCCCcEEEEEEeeccCCCccCCcCCCcCCCCccCCEEEEeeecccccCCCC-----CCEEEeecCCc
Confidence 99999999999999 999999999999876543322 357999999999999999999999854 48999999999
Q ss_pred eeEEEecccCCCccCCCCCCCCCCCCCCCCCCCeEEeCceeeeCCCccCCcccccCCCCCCc-CcccCccCCCCccccCC
Q psy12966 432 ETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGI-TSTGCKADANSTMECSG 510 (741)
Q Consensus 432 e~l~v~l~~~C~C~Ce~~~~~~~~~~s~~Csg~G~c~cG~C~C~~G~~G~~CeC~~~~~~~~-~~~~C~~~~~~~~~Csg 510 (741)
|.++|.+..+|+|+|+.. ...+++ |+|||+|.||+|.|++||.|+.|+|+....... ....|+.+++ ..+|||
T Consensus 174 e~~~v~~~~~C~C~C~~~----~~~~~~-C~g~G~~~CG~C~C~~g~~G~~CeC~~~~~~~~~~~~~C~~~~~-~~~CSg 247 (280)
T 2p26_A 174 DIVTVQVLPQCECRCRDQ----SRDRSL-CHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNN-SIICSG 247 (280)
T ss_dssp CCEEEEEEECCCCCCCCS----TTCTTG-GGGSEEEETTEEEECTTEESTTSCEECTTSCHHHHHHTTCSSTT-SCGGGG
T ss_pred ceeEEEECCcEeCcCcCC----CCcCCc-cCCCCeECCCceeCCCCCcCCcceecCCccccccccccCCCCCC-CCccCC
Confidence 999999999999999865 356677 999999999999999999999999986432111 2237986655 578999
Q ss_pred CceecCCCCcc-C--CCCCceecCcccccee
Q psy12966 511 RGNCLCNQKSL-D--NIVNVIISHVIVTTEC 538 (741)
Q Consensus 511 ~G~C~cG~C~C-~--~~~~~~~G~~~~~Cec 538 (741)
||+|+||+|+| . .+.+.|+|+| ||.
T Consensus 248 rG~C~CG~C~C~~~~~~~~~~~G~~---~~~ 275 (280)
T 2p26_A 248 LGDCVCGQCLCHTSDVPGKLIYGQY---CEH 275 (280)
T ss_dssp SEEEETTEEEECCCSSTTCEEESTT---SCE
T ss_pred CceEeCCeeECcCCCCCCeeEeeEe---ccc
Confidence 99999999999 4 3445699999 874
No 8
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=100.00 E-value=7.7e-36 Score=304.25 Aligned_cols=194 Identities=29% Similarity=0.644 Sum_probs=162.5
Q ss_pred hccceEEeeeCC-CCceEEEEEeecCCCCCCCCC-CCCCCCcccCcEEEEEEEEEeccCCCCCcccceEEEEEeccccee
Q psy12966 356 KISSSVEMKDTS-SSAVKVTYHSKCLNKDGPSKP-TAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDET 433 (741)
Q Consensus 356 ~i~s~v~l~~~~-~~~~~v~~~s~C~~~~~~~~~-~~~C~~v~~g~~V~F~v~v~~~~Cp~~~~~~~~~~~I~~~g~~e~ 433 (741)
+|+|+|+|++++ |++|+|+|++.|+++....++ +++|+||++|++|+|+|+|++.+||.. ++|.|+|+||+|+
T Consensus 1 ~i~s~v~l~~~~~p~~v~v~~~s~C~~g~~~~~~~~~~C~~v~~g~~v~F~v~v~~~~Cp~~-----~~~~i~p~g~~e~ 75 (217)
T 2p28_B 1 KLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQE-----QSFVIRALGFTDI 75 (217)
T ss_dssp CCBSCEEEEECCCCTTEEEEEEEECTTSCEEEEESSEEECCBCTTCCEEEEEEEEESSCCCS-----EEEEEEETTCSCE
T ss_pred CcccEEEEeccCCCCCEEEEEEeECCCCCcccCcccccccCccCCCEEEEEEEEEeCCCCCC-----CceEeeccCCcce
Confidence 589999999999 999999999999987755432 367999999999999999999999964 4899999999999
Q ss_pred EEEecccCCCccCCCCCCCCCCCCCCCCCCCeEEeCceeeeCCCccCCcccccCCCCCCc-CcccCccCCCCccccCCCc
Q psy12966 434 LRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGI-TSTGCKADANSTMECSGRG 512 (741)
Q Consensus 434 l~v~l~~~C~C~Ce~~~~~~~~~~s~~Csg~G~c~cG~C~C~~G~~G~~CeC~~~~~~~~-~~~~C~~~~~~~~~Csg~G 512 (741)
|+|+|+++|+|+|+. ...+++.|++||+|.+|+|.|++||+|..|||+....... ....|...+. ..+|+|||
T Consensus 76 l~i~~~~~C~C~C~~-----~~~~~~~Csg~G~C~~g~C~C~~G~~G~~Cec~~~~~~~~~~~~~C~~~~~-~~~Csg~G 149 (217)
T 2p28_B 76 VTVQVLPQCECRCRD-----QSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNN-SIICSGLG 149 (217)
T ss_dssp EEEEEEECCCCCCCC-----CCC--CTTTTSEEEETTEEEECTTEESTTSCEECCCCC-GGGGGGGBSSTT-SCBGGGTE
T ss_pred EEEEecccccCCCCC-----CCCCCCccCCCceEECCEEECCCCccCCcccccCcccccccCCCcCCCCCC-CCCCCCCC
Confidence 999999999999983 3567889999999999999999999999999986432211 2346876544 46899999
Q ss_pred eecCCCCcc-CCC--CCceecCcccccee----ecCCC----CCc--eeeecCceEecCCceec
Q psy12966 513 NCLCNQKSL-DNI--VNVIISHVIVTTEC----CVLDL----NTV--GACVASAIVKTAGLVQR 563 (741)
Q Consensus 513 ~C~cG~C~C-~~~--~~~~~G~~~~~Cec----C~~~~----gG~--G~C~cg~C~C~~G~~G~ 563 (741)
+|++|+|.| ..| .+.|+|.+ ||+ |+... .+| |+|.+|+|.|.+||+|.
T Consensus 150 ~C~~g~C~C~~gw~~~~~~~G~~---Ce~~~~~C~~~~g~~C~~~~~G~C~~g~C~C~~G~~G~ 210 (217)
T 2p28_B 150 DCVCGQCLCHTSDVPGKLIYGQY---CECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGS 210 (217)
T ss_dssp EEETTEEEECCCCSTTCCEESTT---SCEESSCSCEETTEETTCTTTEEEETTEEEECTTEEST
T ss_pred EEeCCceECCCCCCCcccEECCC---cccCCccCCCCCCCCCCCCCCcEEeCCeeECCCCCccC
Confidence 999999999 432 23489999 996 88753 366 99999999999999994
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=99.92 E-value=4.9e-26 Score=196.13 Aligned_cols=64 Identities=55% Similarity=0.813 Sum_probs=62.3
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccCCCCCCCCC
Q psy12966 678 RECPPHVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKERMLAKWDTKLNSLIY 741 (741)
Q Consensus 678 ~~Cp~~~~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~kFekE~~~akw~~~~NPly~ 741 (741)
++||+++|+++||+||++|||||||++|++||++++|||||||+||||||++++|++++||||+
T Consensus 2 ~~Cp~~~n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~~~w~~~~NPlyk 65 (79)
T 2knc_B 2 AMGSKGPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTANNPLYK 65 (79)
T ss_dssp CSSCSSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHH
T ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcc
Confidence 4799999999999999999999999999999999999999999999999999999999999995
No 10
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=99.74 E-value=2.1e-19 Score=149.21 Aligned_cols=44 Identities=48% Similarity=0.570 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccCCCCCCCCC
Q psy12966 698 VLIGLAFLCLWKILTSIHDRREFAKFEKERMLAKWDTKLNSLIY 741 (741)
Q Consensus 698 vliGl~lLliwK~~~~i~DrrE~~kFekE~~~akw~~~~NPly~ 741 (741)
-||||++|+|||++++|||||||+|||+||+++||++++|||||
T Consensus 10 ~liGl~lLliwKll~~i~DrrEyakFE~Er~~akw~~~~NPLYk 53 (67)
T 1s4x_A 10 SSGLVPRGSHMKLLITIHDRKEFAKFEEERARAKWDTANNPLYK 53 (67)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHTTTTTCSSSSTHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHccccccCCCCcc
Confidence 48999999999999999999999999999999999999999996
No 11
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=99.64 E-value=2.7e-17 Score=138.80 Aligned_cols=42 Identities=52% Similarity=0.778 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccCCCCCCCCC
Q psy12966 700 IGLAFLCLWKILTSIHDRREFAKFEKERMLAKWDTKLNSLIY 741 (741)
Q Consensus 700 iGl~lLliwK~~~~i~DrrE~~kFekE~~~akw~~~~NPly~ 741 (741)
.+||+|+|||+|++|||||||+|||+||+++||++++|||||
T Consensus 20 ~~~~~LliwKll~~i~DrREyaKFEkEr~~akw~~~eNPLYk 61 (75)
T 2kv9_B 20 HMSPECLIWKLLITIHDRKEFAKFEEERARAKWDTANNPLYK 61 (75)
T ss_dssp --CHHHHHHHHHHHHHHCHHHHHHHHHHHHGGGSSTTSHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccccCCCcc
Confidence 467888999999999999999999999999999999999996
No 12
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=99.63 E-value=9.6e-17 Score=122.49 Aligned_cols=43 Identities=56% Similarity=0.922 Sum_probs=41.7
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy12966 678 RECPPHVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREF 720 (741)
Q Consensus 678 ~~Cp~~~~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~ 720 (741)
++||++||+++|++|+++|||||||++|++||+++++||||||
T Consensus 1 ~~Cp~~~n~~~Iv~gvi~~ivliGl~lLliwk~~~~i~DrrEy 43 (43)
T 2k9j_B 1 PESPKGPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEF 43 (43)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEeehHHHHHHHHHHHHHHHHHHHHHHHheehhhcC
Confidence 4799999999999999999999999999999999999999997
No 13
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=99.61 E-value=2.3e-16 Score=166.16 Aligned_cols=154 Identities=17% Similarity=0.260 Sum_probs=111.8
Q ss_pred CcccCcEEEEEEEEEeccCCCCCcccceEEEEEecccceeEEEecccCCCccCCCCCCCCCCCCCCCCCCCeEEeCceee
Q psy12966 394 GLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCE 473 (741)
Q Consensus 394 ~v~~g~~V~F~v~v~~~~Cp~~~~~~~~~~~I~~~g~~e~l~v~l~~~C~C~Ce~~~~~~~~~~s~~Csg~G~c~cG~C~ 473 (741)
.|++|++|+|+|+|+ +.... .+|.|++.+|+|.|.|.+...|.|+|... ..++..|++
T Consensus 84 ~LRpGd~vsF~V~vr----y~~~~---s~v~i~~~~~pe~l~v~~~s~C~~~~~~~-----~~~~~~C~~---------- 141 (280)
T 2p26_A 84 YLRPGQAAAFNVTFR----RAKLS---SRVFLDHNALPDTLKVTYDSFCSNGVTHR-----NQPRGDCDG---------- 141 (280)
T ss_dssp EECTTCCEEEEEEEC----CSSCC---SSEEEEECCCCTTEEEEEEEECSSSCEEE-----EESSEEESS----------
T ss_pred EecCCCeEEEEEEEE----ecccc---cEEEEeecCCCCcEEEEEEeeccCCCccC-----CcCCCcCCC----------
Confidence 567899999999999 33222 37999999999999999999999988532 233444543
Q ss_pred eCCCccCCcccccCCCCCCcCcccCccCCCCccc-cCCCceecCCCCccCCCCCceecCcccccee-ecCC---C---CC
Q psy12966 474 CDQSHFGRRCECDAESSQGITSTGCKADANSTME-CSGRGNCLCNQKSLDNIVNVIISHVIVTTEC-CVLD---L---NT 545 (741)
Q Consensus 474 C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~-Csg~G~C~cG~C~C~~~~~~~~G~~~~~Cec-C~~~---~---gG 545 (741)
++.|+.|++.... ....|+..+. ..+ |+|+. ...+.+.|.+ |+| |... . +|
T Consensus 142 ---~~iG~~v~f~v~v----~~~~C~~~~~-~~I~p~G~~----------e~~~v~~~~~---C~C~C~~~~~~~~~C~g 200 (280)
T 2p26_A 142 ---VQINVPITFQVKV----TATECIQEQS-FVIRALGFT----------DIVTVQVLPQ---CECRCRDQSRDRSLCHG 200 (280)
T ss_dssp ---CCTTCCEEEEEEE----EESSCCCCEE-EEEEETTCC----------CCEEEEEEEC---CCCCCCCSTTCTTGGGG
T ss_pred ---CccCCEEEEeeec----ccccCCCCCC-EEEeecCCc----------ceeEEEECCc---EeCcCcCCCCcCCccCC
Confidence 7999999986422 2246875443 234 87762 2223577888 998 6422 2 28
Q ss_pred ceeeecCceEecCCcee---ccccc---------cCCCCccccCccccCCcccccccccc
Q psy12966 546 VGACVASAIVKTAGLVQ---RVTVA---------PLMTPVYLLREERCARARESVSAVCA 593 (741)
Q Consensus 546 ~G~C~cg~C~C~~G~~G---~~~~~---------~C~~~~~~~~~~~Csg~G~C~cG~C~ 593 (741)
||.|.||.|+|++||+| .++.. .|+.+. .+ .+|||||+|+||+|.
T Consensus 201 ~G~~~CG~C~C~~g~~G~~CeC~~~~~~~~~~~~~C~~~~--~~-~~CSgrG~C~CG~C~ 257 (280)
T 2p26_A 201 KGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDN--NS-IICSGLGDCVCGQCL 257 (280)
T ss_dssp SEEEETTEEEECTTEESTTSCEECTTSCHHHHHHTTCSST--TS-CGGGGSEEEETTEEE
T ss_pred CCeECCCceeCCCCCcCCcceecCCccccccccccCCCCC--CC-CccCCCceEeCCeeE
Confidence 99999999999999999 22211 797653 13 789999999999999
No 14
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=99.47 E-value=2.4e-14 Score=167.11 Aligned_cols=124 Identities=24% Similarity=0.507 Sum_probs=97.9
Q ss_pred CCCCCCCeEEeCceeeeC------CCccCCcccccCCCCCCcCcccCccCCCCccccCC--CceecCCCCccCCCCCcee
Q psy12966 458 SPNCSGFGTFKCGLCECD------QSHFGRRCECDAESSQGITSTGCKADANSTMECSG--RGNCLCNQKSLDNIVNVII 529 (741)
Q Consensus 458 s~~Csg~G~c~cG~C~C~------~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg--~G~C~cG~C~C~~~~~~~~ 529 (741)
+..|+++|+|.+|.|.|. +||+|..|+|+. ..|...++ ..|++ ||+|.+|+|.|.. +|+
T Consensus 481 ~~~Cs~~G~C~~G~C~C~~~~~~~~G~~G~~Ce~~~--------~~C~~~~~--~~C~~~~~G~C~~g~C~C~~---G~~ 547 (687)
T 3k6s_B 481 SIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDT--------INCERYNG--QVCGGPGRGLCFCGKCRCHP---GFE 547 (687)
T ss_dssp SCGGGSSEEEETTEEEECCCCSTTCCEESTTSCEES--------SCSCEETT--EETSHHHHEEEETTEEEECT---TCC
T ss_pred CCcCCCCCEEeCCEEEcCCCCCCCCCcccccccccc--------ccccCCCC--cCcCCCCCCeEECCEEEcCC---CCc
Confidence 346999999999999999 999999999864 56876544 68999 9999999999964 799
Q ss_pred cCcccccee------ecCCC----CCceeeecCceEecCCceec-ccc-ccCCCCccccCccccCCcccccccccccccc
Q psy12966 530 SHVIVTTEC------CVLDL----NTVGACVASAIVKTAGLVQR-VTV-APLMTPVYLLREERCARARESVSAVCANVLK 597 (741)
Q Consensus 530 G~~~~~Cec------C~~~~----gG~G~C~cg~C~C~~G~~G~-~~~-~~C~~~~~~~~~~~Csg~G~C~cG~C~~~~~ 597 (741)
|.+ |+| |+... .+||+|.+|+|.|.+||+|. |.. ..|. ..|+++|.|+ +|.
T Consensus 548 G~~---Cec~~~~~~C~~~~g~~Cs~~G~C~~g~C~C~~Gy~G~~Ce~c~~C~--------~~C~~~g~Cv--~C~---- 610 (687)
T 3k6s_B 548 GSA---CQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCP--------SPCGKYISCA--ECL---- 610 (687)
T ss_dssp STT---SCSCCSSCTTBCTTCSBTSSSCCBCSSCBCCSTTCCTTTTCCCTTSC--------CCCTTTHHHH--TTT----
T ss_pred CCC---CccCCCCCCCCCCCCCCCCCCCcCCCCEEECCCCCcCCCCCCCCCCC--------cccCCCCCCC--ccc----
Confidence 999 994 76542 37999999999999999994 332 3562 3699999998 788
Q ss_pred ccccCCCCCccc---CCCCC
Q psy12966 598 IAREDIPAGSAR---NARPV 614 (741)
Q Consensus 598 C~~~~~~gy~G~---e~Cp~ 614 (741)
| ...|..+. +.|+.
T Consensus 611 ~---~~~G~~~~~C~~~C~~ 627 (687)
T 3k6s_B 611 K---FEKGPFGKNCSAACPG 627 (687)
T ss_dssp T---SCSCCCSSCSSSSCCC
T ss_pred C---CCCCCCCcccccccCC
Confidence 7 34454444 35653
No 15
>3g9w_C Integrin beta-1D; protein-protein complex, PH domain superfold, PTB domain, HE bundle, intrinsically unstructured, cell adhesion; 2.17A {Homo sapiens} PDB: 1kup_B 1kuz_B
Probab=99.46 E-value=1.7e-14 Score=114.20 Aligned_cols=33 Identities=67% Similarity=1.001 Sum_probs=32.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHhcccCCCCCCCCC
Q psy12966 709 KILTSIHDRREFAKFEKERMLAKWDTKLNSLIY 741 (741)
Q Consensus 709 K~~~~i~DrrE~~kFekE~~~akw~~~~NPly~ 741 (741)
|+|++|||||||||||+||++++|++++||||+
T Consensus 3 Kll~~i~DrREyakFe~Er~~akw~~~~NPLYk 35 (52)
T 3g9w_C 3 KLLMIIHDRREFAKFEKEKMNAKWDTQENPIYK 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCEECSSCCTTCC
T ss_pred EEEEEeehHHHHHHHHHHHHHhccccCCCCccc
Confidence 899999999999999999999999999999996
No 16
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=99.45 E-value=1.4e-13 Score=160.93 Aligned_cols=115 Identities=27% Similarity=0.542 Sum_probs=93.9
Q ss_pred CCCCCCeEEeCceeeeC----CCccCCcccccCCCCCCcCcccCccCCCCccccCCCceecCCCCccCCCCCceecCccc
Q psy12966 459 PNCSGFGTFKCGLCECD----QSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLCNQKSLDNIVNVIISHVIV 534 (741)
Q Consensus 459 ~~Csg~G~c~cG~C~C~----~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~cG~C~C~~~~~~~~G~~~~ 534 (741)
..|+++|+|.+|.|.|. +||+|..|||+. ..|...++ ..|++||+|.+|+|.|.. +|+|.+
T Consensus 493 ~~Cs~~G~C~~g~C~C~~~~~~Gy~G~~Ce~~~--------~~C~~~~~--~~C~~~G~C~~g~C~C~~---Gy~G~~-- 557 (690)
T 3fcs_B 493 PVCSQRGECLCGQCVCHSSDFGKITGKYCECDD--------FSCVRYKG--EMCSGHGQCSCGDCLCDS---DWTGYY-- 557 (690)
T ss_dssp CGGGGSEEECSSSEEECCCSSCCCBSTTSCBCS--------SCCCBSSS--SBGGGSEEEETTEEEECT---TEESSS--
T ss_pred CCCCCCCEEECCeeEeecCCCCCeeCCCcCccc--------CcCcCCCC--CCCCCCCEecCCeeECcC---CCcCCC--
Confidence 46999999999999999 999999999854 46875444 689999999999999964 799999
Q ss_pred ccee------ecCCC----CCceeeecCceEe-cCCcee-cccc-ccCCCCccccCccccCCcccccccccccccccccc
Q psy12966 535 TTEC------CVLDL----NTVGACVASAIVK-TAGLVQ-RVTV-APLMTPVYLLREERCARARESVSAVCANVLKIARE 601 (741)
Q Consensus 535 ~Cec------C~~~~----gG~G~C~cg~C~C-~~G~~G-~~~~-~~C~~~~~~~~~~~Csg~G~C~cG~C~~~~~C~~~ 601 (741)
|+| |.... .++|+|+++.|.| .+||+| .|.. ..| + ..|.++|+|+ . |
T Consensus 558 -CeC~~~~~~C~~~~g~~C~~~G~C~~g~C~C~~~Gy~G~~Ce~C~~C--~------~~C~~~g~Cv--~------C--- 617 (690)
T 3fcs_B 558 -CNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTC--P------DACTFKKECV--E------C--- 617 (690)
T ss_dssp -SCEECCCTTTBCTTSSBTSSSCEEETTEEECCSTTCBSTTSCBCTTS--C------CTTTSCCGGG--T------T---
T ss_pred -CccCCCCCcccCCCCCCCCCCCEEeCCEEECCCCCccCCCcCcCCCC--C------CCCCCCCCcc--c------C---
Confidence 995 76432 3799999999999 999999 4443 455 2 4699999997 2 5
Q ss_pred CCCCCccc
Q psy12966 602 DIPAGSAR 609 (741)
Q Consensus 602 ~~~gy~G~ 609 (741)
..+|+|.
T Consensus 618 -~~g~tG~ 624 (690)
T 3fcs_B 618 -KKFDRGA 624 (690)
T ss_dssp -TTTCCSS
T ss_pred -CCCCccC
Confidence 4578886
No 17
>1m8o_B Platele integrin BETA3 subunit: cytoplasmic domain; ALFA helix, platelet, membrane protein; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2l1c_B* 2h7d_B* 2h7e_B*
Probab=99.39 E-value=8e-14 Score=108.56 Aligned_cols=33 Identities=64% Similarity=0.963 Sum_probs=31.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHhcccCCCCCCCCC
Q psy12966 709 KILTSIHDRREFAKFEKERMLAKWDTKLNSLIY 741 (741)
Q Consensus 709 K~~~~i~DrrE~~kFekE~~~akw~~~~NPly~ 741 (741)
|+|++|||||||+|||+|+++++|++++||||+
T Consensus 1 Kll~~i~DrrEyakFe~e~~~~kw~~~~NPlYk 33 (47)
T 1m8o_B 1 KLLITIHDRKEFAKFEEERARAKWDTANNPLYK 33 (47)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHTTTTTCCCCCSS
T ss_pred CEEEEEEehHHHHHHHHHHHhcccccccCCCcc
Confidence 688999999999999999999999999999997
No 18
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=99.12 E-value=3.9e-11 Score=129.07 Aligned_cols=126 Identities=16% Similarity=0.320 Sum_probs=70.2
Q ss_pred CCCCCeEEe-CceeeeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceec-CCCCccCCCCCceecCccccce
Q psy12966 460 NCSGFGTFK-CGLCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCL-CNQKSLDNIVNVIISHVIVTTE 537 (741)
Q Consensus 460 ~Csg~G~c~-cG~C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~-cG~C~C~~~~~~~~G~~~~~Ce 537 (741)
.|+++|+|. -+.|.|.+||.|..|+-+ .|. ..|+++|+|+ .+.|.|.. +|+|.. |+
T Consensus 154 ~C~~~G~C~~~~~C~C~~G~~G~~C~~~----------~C~------~~C~~~G~C~~~~~C~C~~---G~~G~~---C~ 211 (324)
T 2ygq_A 154 GCRNGGFCNERRICECPDGFHGPHCEKA----------LCT------PRCMNGGLCVTPGFCICPP---GFYGVN---CD 211 (324)
T ss_dssp CCCSSCEECTTSCEECCTTEESSSSCEE----------SSS------SCCCTTCEECSSCCEECCT---TCBTTT---TC
T ss_pred CCCCCCEECCCCeEECCCCCcCCCCCCC----------CCC------CCCCCCCEEcCCCEEeCCC---CccCCC---cc
Confidence 599999997 589999999999999853 364 4699999998 59999964 799999 99
Q ss_pred e--ecCCCCCceeee-cCceEecCCcee-ccccccCCCCccccCccccCCcccccc-ccccccccccccCCCCCccc---
Q psy12966 538 C--CVLDLNTVGACV-ASAIVKTAGLVQ-RVTVAPLMTPVYLLREERCARARESVS-AVCANVLKIAREDIPAGSAR--- 609 (741)
Q Consensus 538 c--C~~~~gG~G~C~-cg~C~C~~G~~G-~~~~~~C~~~~~~~~~~~Csg~G~C~c-G~C~~~~~C~~~~~~gy~G~--- 609 (741)
. |.....++|+|. -+.|.|.+||+| .+....|. ..|.++|+|.- ++|. | .+||+|.
T Consensus 212 ~~~C~~~C~~~G~C~~~~~C~C~~G~~G~~C~~~~C~--------~~C~~~g~C~~~~~C~----C----~~G~~G~~C~ 275 (324)
T 2ygq_A 212 KANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCP--------QPCRNGGKCIGKSKCK----C----SKGYQGDLCS 275 (324)
T ss_dssp BCCCSSCCCSSCCBSCSSCBCCCTTCCTTTTC------------------------------------------------
T ss_pred cCcCCCCCCCCCeeCCCCeeeCCCCccCCCCCcCcCC--------CcCCCCCEECCCCEEE----C----CCCCcCCCCc
Confidence 7 876666789997 479999999999 45445562 35888899985 7999 9 8999997
Q ss_pred -CCCCCcCCCCCCCcee
Q psy12966 610 -NARPVLEDVQEFKNCI 625 (741)
Q Consensus 610 -e~Cp~~~~C~~~~~Cv 625 (741)
..|+ ..|..++.|+
T Consensus 276 ~~~C~--~~C~~~g~C~ 290 (324)
T 2ygq_A 276 KPVCE--PGCGAHGTCH 290 (324)
T ss_dssp -----------------
T ss_pred CCCCC--CCCCCCCEEC
Confidence 2343 4577666665
No 19
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=99.10 E-value=4.4e-11 Score=121.80 Aligned_cols=87 Identities=18% Similarity=0.295 Sum_probs=70.0
Q ss_pred ccccCCCceecCCCCccCCCCCceecCcccccee-------------ecCC-----CCCceeeecCceEecCC------c
Q psy12966 505 TMECSGRGNCLCNQKSLDNIVNVIISHVIVTTEC-------------CVLD-----LNTVGACVASAIVKTAG------L 560 (741)
Q Consensus 505 ~~~Csg~G~C~cG~C~C~~~~~~~~G~~~~~Cec-------------C~~~-----~gG~G~C~cg~C~C~~G------~ 560 (741)
+..|+|||+|++|.|.|.. +|+|.+ ||+ |... ..+||+|++|+|.|.+| |
T Consensus 95 ~~~Csg~G~C~~g~C~C~~---G~~G~~---Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~~g~C~C~~gw~~~~~~ 168 (217)
T 2p28_B 95 RSLCHGKGFLECGICRCDT---GYIGKN---CECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLI 168 (217)
T ss_dssp -CTTTTSEEEETTEEEECT---TEESTT---SCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEETTEEEECCCCSTTCCE
T ss_pred CCccCCCceEECCEEECCC---CccCCc---ccccCcccccccCCCcCCCCCCCCCCCCCCEEeCCceECCCCCCCcccE
Confidence 3689999999999999964 799999 995 2221 12799999999999999 4
Q ss_pred ee-cc--ccccCCCCccccCccccCCc--cccccccccccccccccCCCCCccc
Q psy12966 561 VQ-RV--TVAPLMTPVYLLREERCARA--RESVSAVCANVLKIAREDIPAGSAR 609 (741)
Q Consensus 561 ~G-~~--~~~~C~~~~~~~~~~~Csg~--G~C~cG~C~~~~~C~~~~~~gy~G~ 609 (741)
+| .+ ....|.... + .+|++| |+|++|+|. | .+||+|.
T Consensus 169 ~G~~Ce~~~~~C~~~~---g-~~C~~~~~G~C~~g~C~----C----~~G~~G~ 210 (217)
T 2p28_B 169 YGQYCECDTINCERYN---G-QVCGGPGRGLCFCGKCR----C----HPGFEGS 210 (217)
T ss_dssp ESTTSCEESSCSCEET---T-EETTCTTTEEEETTEEE----E----CTTEEST
T ss_pred ECCCcccCCccCCCCC---C-CCCCCCCCcEEeCCeeE----C----CCCCccC
Confidence 88 33 356785433 3 689998 999999999 9 8999995
No 20
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.03 E-value=7.8e-10 Score=108.45 Aligned_cols=111 Identities=17% Similarity=0.162 Sum_probs=80.5
Q ss_pred CcceeEEeecCCCChHH-hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeee
Q psy12966 121 YPVDLYYLMDLSNSMRD-DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNV 199 (741)
Q Consensus 121 ~pvDly~LmDlS~SM~d-dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~ 199 (741)
.|+||+||+|.|+||.. +++.+|+.+..|++.|. ..+.|+|+..|.+.+. ..
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~--~~~~~v~vv~f~~~~~-------------------------~~ 56 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLK--KSKTLFSLMQYSEEFR-------------------------IH 56 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHC--CTTEEEEEEEESSSEE-------------------------EE
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEEecCCce-------------------------EE
Confidence 58999999999999987 88999999999998886 5689999999988632 22
Q ss_pred ecCCc--cHHHHHHhccceeeccCCCCCcchHHHHHHHHh--ccccccccCCccEEEEEecCCCCC
Q psy12966 200 MSLSQ--DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIV--CKEEIGWRDRARRLLVFSTDAEFH 261 (741)
Q Consensus 200 l~lT~--d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~v--C~~~igWR~~a~rliv~~TDa~~H 261 (741)
++|++ +...+.+.|+.+...|+. -...+||..|.- =...-|||+++.|+|||+||...+
T Consensus 57 ~~l~~~~~~~~~~~~i~~l~~~~g~---T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~ 119 (194)
T 1mf7_A 57 FTFKEFQNNPNPRSLVKPITQLLGR---THTATGIRKVVRELFNITNGARKNAFKILVVITDGEKF 119 (194)
T ss_dssp ECHHHHHHSCCHHHHHTTCCCCCSC---BCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCB
T ss_pred EecCCcCCHHHHHHHHHhCcCCCCC---chHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCC
Confidence 34444 345677778777643332 234555555541 012247899999999999998765
No 21
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=99.02 E-value=1.3e-10 Score=124.87 Aligned_cols=113 Identities=19% Similarity=0.372 Sum_probs=48.0
Q ss_pred CCCCCCeEEeC-ceeeeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceec-CCCCccCCCCCceecCccccc
Q psy12966 459 PNCSGFGTFKC-GLCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCL-CNQKSLDNIVNVIISHVIVTT 536 (741)
Q Consensus 459 ~~Csg~G~c~c-G~C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~-cG~C~C~~~~~~~~G~~~~~C 536 (741)
+.|+++|+|.. +.|.|.+||.|..|+.+ .|. ..|+++|+|+ .++|.|.. +|+|.. |
T Consensus 185 ~~C~~~G~C~~~~~C~C~~G~~G~~C~~~----------~C~------~~C~~~G~C~~~~~C~C~~---G~~G~~---C 242 (324)
T 2ygq_A 185 PRCMNGGLCVTPGFCICPPGFYGVNCDKA----------NCS------TTCFNGGTCFYPGKCICPP---GLEGEQ---C 242 (324)
T ss_dssp SCCCTTCEECSSCCEECCTTCBTTTTCBC----------CCS------SCCCSSCCBSCSSCBCCCT---TCCTTT---T
T ss_pred CCCCCCCEEcCCCEEeCCCCccCCCcccC----------cCC------CCCCCCCeeCCCCeeeCCC---CccCCC---C
Confidence 46889999975 89999999999999852 364 3599999998 58999964 799999 9
Q ss_pred ee--ecCCCCCceeee-cCceEecCCcee-ccccccCCCCccccCccccCCccccc-cccccccccccccCCCCCccc
Q psy12966 537 EC--CVLDLNTVGACV-ASAIVKTAGLVQ-RVTVAPLMTPVYLLREERCARARESV-SAVCANVLKIAREDIPAGSAR 609 (741)
Q Consensus 537 ec--C~~~~gG~G~C~-cg~C~C~~G~~G-~~~~~~C~~~~~~~~~~~Csg~G~C~-cG~C~~~~~C~~~~~~gy~G~ 609 (741)
+. |+.....+|+|. -++|.|.+||+| .+....|. ..|+++|+|. .++|. | .+||+|.
T Consensus 243 ~~~~C~~~C~~~g~C~~~~~C~C~~G~~G~~C~~~~C~--------~~C~~~g~C~~~~~C~----C----~~G~~G~ 304 (324)
T 2ygq_A 243 EISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCE--------PGCGAHGTCHEPNKCQ----C----QEGWHGR 304 (324)
T ss_dssp C-----------------------------------------------------------------------------
T ss_pred CcCcCCCcCCCCCEECCCCEEECCCCCcCCCCcCCCCC--------CCCCCCCEECCCCEeE----C----CCCCcCC
Confidence 97 875555679997 479999999999 55556662 3599999998 58999 9 8999996
No 22
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.01 E-value=7.9e-09 Score=102.57 Aligned_cols=139 Identities=12% Similarity=0.114 Sum_probs=95.6
Q ss_pred CcceeEEeecCCCChHH-hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeee
Q psy12966 121 YPVDLYYLMDLSNSMRD-DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNV 199 (741)
Q Consensus 121 ~pvDly~LmDlS~SM~d-dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~ 199 (741)
.|+||+||+|.|+||.. +++.+|+.+..|++.|.--..+.|+|+..|.+.+.. .
T Consensus 12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~-------------------------~ 66 (202)
T 1ijb_A 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHA-------------------------Y 66 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEE-------------------------E
T ss_pred CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceE-------------------------E
Confidence 37999999999999975 789999988888877653235789999999886321 2
Q ss_pred ecCC--ccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCC
Q psy12966 200 MSLS--QDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDG 277 (741)
Q Consensus 200 l~lT--~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg 277 (741)
++|+ .+.+.+.+.|+.+...|+.- -...+||..|+-=--.-++|+++.|+|||+||...+..
T Consensus 67 ~~l~~~~~~~~~~~~i~~l~~~gg~~--T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~-------------- 130 (202)
T 1ijb_A 67 IGLKDRKRPSELRRIASQVKYAGSQV--ASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQR-------------- 130 (202)
T ss_dssp ECTTCCCCHHHHHHHHHTCCCCCBSC--CCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGG--------------
T ss_pred EecCCCCCHHHHHHHHHhCcCCCCCc--CcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCcc--------------
Confidence 3444 56788888898887655411 12344555444100023688899999999999864320
Q ss_pred cccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEe
Q psy12966 278 LCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVT 317 (741)
Q Consensus 278 ~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt 317 (741)
+...+.+..+.|++.+|.+ |+|.
T Consensus 131 ----------------~~~~~~~~a~~l~~~gi~i-~~ig 153 (202)
T 1ijb_A 131 ----------------MSRNFVRYVQGLKKKKVIV-IPVG 153 (202)
T ss_dssp ----------------GCTTHHHHHHHHHHTTEEE-EEEE
T ss_pred ----------------chHHHHHHHHHHHHCCCEE-EEEe
Confidence 0113677888999999865 5553
No 23
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.00 E-value=4.4e-09 Score=102.84 Aligned_cols=111 Identities=15% Similarity=0.114 Sum_probs=79.8
Q ss_pred CcceeEEeecCCCChH-HhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeee
Q psy12966 121 YPVDLYYLMDLSNSMR-DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNV 199 (741)
Q Consensus 121 ~pvDly~LmDlS~SM~-ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~ 199 (741)
.|+||+||+|.|+||. +.++.+|+.+..|++.|..-....|+|+..|.+.+.. .
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~-------------------------~ 58 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTI-------------------------D 58 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEE-------------------------E
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceE-------------------------E
Confidence 4899999999999997 7899999999999888753345699999999875321 2
Q ss_pred ecC--CccHHHHHHhccceeeccCCCCCcchHHHHHHHHh--ccccccccCCccEEEEEecCCC
Q psy12966 200 MSL--SQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIV--CKEEIGWRDRARRLLVFSTDAE 259 (741)
Q Consensus 200 l~l--T~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~v--C~~~igWR~~a~rliv~~TDa~ 259 (741)
++| +.|.+.+.+.|+.+...|+. -...+||..|.- =....|||+++.|+||++||..
T Consensus 59 ~~l~~~~~~~~~~~~i~~l~~~~g~---T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~ 119 (189)
T 1atz_A 59 VPWNVVPEKAHLLSLVDVMQREGGP---SQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDV 119 (189)
T ss_dssp ECTTCCCCHHHHHHHHHTCCCCCCC---CCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSC
T ss_pred EecCCCCCHHHHHHHHHhCcCCCCc---chHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCC
Confidence 344 67889999999887754432 233444444431 1223578998899777777764
No 24
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=98.99 E-value=2.2e-09 Score=104.44 Aligned_cols=138 Identities=12% Similarity=0.100 Sum_probs=95.9
Q ss_pred CcceeEEeecCCCChH-HhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeee
Q psy12966 121 YPVDLYYLMDLSNSMR-DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNV 199 (741)
Q Consensus 121 ~pvDly~LmDlS~SM~-ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~ 199 (741)
.|+||+||+|.|+||. ++++.+|+.+..|++.|.......|+|+..|.+.+. ..
T Consensus 16 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~-------------------------~~ 70 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVH-------------------------LQ 70 (178)
T ss_dssp TCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE-------------------------EE
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceE-------------------------EE
Confidence 3899999999999994 689999999999888775334569999999998632 22
Q ss_pred ecCCc----cHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCC
Q psy12966 200 MSLSQ----DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPN 275 (741)
Q Consensus 200 l~lT~----d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pn 275 (741)
++|+. +.+.+.+.|+.+...|+.-.-..+|...++.+. ...-|+|++++|+|||+||...+.
T Consensus 71 ~~l~~~~~~~~~~~~~~i~~l~~~~g~T~~~~aL~~a~~~l~-~~~~g~r~~~~~~iillTDG~~~~------------- 136 (178)
T 2xgg_A 71 WDLQSPNAVDKQLAAHAVLDMPYKKGSTNTSDGLKACKQILF-TGSRPGREHVPKLVIGMTDGESDS------------- 136 (178)
T ss_dssp ECTTSGGGSCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-HCCCTTCTTSCEEEEEEESSCCCH-------------
T ss_pred EeCCCCCccCHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhc-CcccCCCCCCCEEEEEEcCCCCCC-------------
Confidence 34444 678889999888754443333333443333221 123478999999999999976331
Q ss_pred CCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEe
Q psy12966 276 DGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVT 317 (741)
Q Consensus 276 Dg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt 317 (741)
+ +++.++.+.|++.+|.+ |+|.
T Consensus 137 -~------------------~~~~~~~~~l~~~gi~v-~~ig 158 (178)
T 2xgg_A 137 -D------------------FRTVRAAKEIRELGGIV-TVLA 158 (178)
T ss_dssp -H------------------HHHSHHHHHHHHTTCEE-EEEE
T ss_pred -C------------------ccHHHHHHHHHHCCCEE-EEEE
Confidence 0 12556788888888865 5553
No 25
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.95 E-value=5.2e-09 Score=102.42 Aligned_cols=135 Identities=15% Similarity=0.159 Sum_probs=89.8
Q ss_pred CCcceeEEeecCCCChHH-hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceee
Q psy12966 120 DYPVDLYYLMDLSNSMRD-DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHN 198 (741)
Q Consensus 120 ~~pvDly~LmDlS~SM~d-dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~ 198 (741)
..|+||+||+|.|+||.. +++.++..+..+++.|. ..+.|+|+..|.+.+..
T Consensus 7 ~~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~--~~~~~v~lv~f~~~~~~------------------------- 59 (198)
T 1n3y_A 7 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQ--RPSTQFSLMQFSNKFQT------------------------- 59 (198)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSC--TTTEEEEEEEESSSEEE-------------------------
T ss_pred CCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEEeCCCccE-------------------------
Confidence 458999999999999987 78888888887776664 68999999999986322
Q ss_pred eecCCc--cHHHHHHhccceeeccCCCCCcchHHHHHHHHhc--cccccccCCccEEEEEecCCCCCcCCCCCccceecC
Q psy12966 199 VMSLSQ--DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVC--KEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKP 274 (741)
Q Consensus 199 ~l~lT~--d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC--~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~p 274 (741)
.++|++ +...+.+.|+.+...++ .....+||..|.-= ...-|+|++++|+|||+||...+.
T Consensus 60 ~~~~~~~~~~~~~~~~i~~l~~~~g---~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~------------ 124 (198)
T 1n3y_A 60 HFTFEEFRRSSNPLSLLASVHQLQG---FTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEG------------ 124 (198)
T ss_dssp EECHHHHHHCSSGGGGGTTCCCCCS---CBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBS------------
T ss_pred EEecCccCCHHHHHHHHhcCcCCCC---CchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCC------------
Confidence 123322 22445566666543232 23455666666510 112356788999999999987541
Q ss_pred CCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEE
Q psy12966 275 NDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAV 316 (741)
Q Consensus 275 nDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifav 316 (741)
|-..+.++.+.+++++|.+ |+|
T Consensus 125 -------------------~~~~~~~~~~~~~~~gi~i-~~i 146 (198)
T 1n3y_A 125 -------------------DSLDYKDVIPMADAAGIIR-YAI 146 (198)
T ss_dssp -------------------CSSCHHHHHHHHHHTTCEE-EEE
T ss_pred -------------------CcccHHHHHHHHHHCCCEE-EEE
Confidence 1113567788889999865 444
No 26
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.94 E-value=1e-08 Score=101.28 Aligned_cols=134 Identities=18% Similarity=0.234 Sum_probs=93.9
Q ss_pred cceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeeec
Q psy12966 122 PVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMS 201 (741)
Q Consensus 122 pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l~ 201 (741)
|+||+||+|.|+||. .++.+|..+.+|++.|.....+.|+|+..|.+.+. ..++
T Consensus 6 ~~div~vlD~SgSm~-~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~-------------------------~~~~ 59 (200)
T 1v7p_C 6 LIDVVVVCDESNSIY-PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPR-------------------------VVFN 59 (200)
T ss_dssp CEEEEEEEECCTTCC-CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEE-------------------------EEEC
T ss_pred cccEEEEEECCCCcc-cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCce-------------------------EEEe
Confidence 799999999999999 58889988888887665334689999999998632 2344
Q ss_pred CC--ccHHHHHHhccceeeccCCCCCcchHHHHHHHHh--ccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCC
Q psy12966 202 LS--QDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIV--CKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDG 277 (741)
Q Consensus 202 lT--~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~v--C~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg 277 (741)
|| .+...+.+.|+.+...|+.- -...+||..|.- =...-|+|++++|+|||+||...+..
T Consensus 60 l~~~~~~~~~~~~i~~l~~~~G~~--T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~-------------- 123 (200)
T 1v7p_C 60 LNTYKTKEEMIVATSQTSQYGGDL--TNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDG-------------- 123 (200)
T ss_dssp TTTCSSHHHHHHHHHHCCCCCCSC--CCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCG--------------
T ss_pred CCCcCCHHHHHHHHHhhhccCCCC--CcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCc--------------
Confidence 55 36778888888776543311 124455555541 01223789999999999999875411
Q ss_pred cccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEE
Q psy12966 278 LCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAV 316 (741)
Q Consensus 278 ~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifav 316 (741)
..+.++.+.|++.+|.+ |+|
T Consensus 124 ------------------~~~~~~~~~~~~~gi~i-~~i 143 (200)
T 1v7p_C 124 ------------------SMLKAVIDQCNHDNILR-FGI 143 (200)
T ss_dssp ------------------GGHHHHHHHHHHTTEEE-EEE
T ss_pred ------------------ccHHHHHHHHHHCCCEE-EEE
Confidence 12567888888888865 444
No 27
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=3.5e-08 Score=97.97 Aligned_cols=131 Identities=17% Similarity=0.164 Sum_probs=96.6
Q ss_pred cCCCcceeEEeecCCCChHH------hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCC
Q psy12966 118 AEDYPVDLYYLMDLSNSMRD------DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCA 191 (741)
Q Consensus 118 ~~~~pvDly~LmDlS~SM~d------dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~ 191 (741)
.+..|+||+||+|.|+||.. -++.+|..+..|++.+ .+.|+|+..|.+.+
T Consensus 7 ~~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~----~~~~v~lv~F~~~~-------------------- 62 (218)
T 3ibs_A 7 VKRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDEL----DNDKVGMIVFAGDA-------------------- 62 (218)
T ss_dssp ---CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTC----SSCEEEEEEESSSE--------------------
T ss_pred cccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhC----CCCeEEEEEECCCc--------------------
Confidence 34568999999999999996 5888898888887665 36799999998752
Q ss_pred CCcceeeeecCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccce
Q psy12966 192 APYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGI 271 (741)
Q Consensus 192 ~~f~f~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi 271 (741)
+..++||.|...+...++.+.........-...+||..|+ +.+.++++..|+|||+||...+..
T Consensus 63 -----~~~~~~~~~~~~~~~~l~~l~~~~~~~g~T~l~~al~~a~---~~l~~~~~~~~~ivllTDG~~~~~-------- 126 (218)
T 3ibs_A 63 -----FTQLPITSDYISAKMFLESISPSLISKQGTAIGEAINLAT---RSFTPQEGVGRAIIVITDGENHEG-------- 126 (218)
T ss_dssp -----EEEEEEESCHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHH---TTSCSCSSCCEEEEEEECCTTCCS--------
T ss_pred -----eEeCCCCCCHHHHHHHHHhcCcccCCCCCCcHHHHHHHHH---HHHhhCCCCCcEEEEEcCCCCCCC--------
Confidence 1346788889999998888765321122345677877777 577777788999999999874421
Q ss_pred ecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEE
Q psy12966 272 VKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLI 313 (741)
Q Consensus 272 ~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~I 313 (741)
.+.++.+.+++++|.+.
T Consensus 127 -------------------------~~~~~~~~~~~~~i~v~ 143 (218)
T 3ibs_A 127 -------------------------GAVEAAKAAAEKGIQVS 143 (218)
T ss_dssp -------------------------CHHHHHHHHHTTTEEEE
T ss_pred -------------------------cHHHHHHHHHhcCCEEE
Confidence 25678888888887654
No 28
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.87 E-value=8.4e-09 Score=107.11 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=93.1
Q ss_pred CCcceeEEeecCCCChH-HhH-HHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCccee
Q psy12966 120 DYPVDLYYLMDLSNSMR-DDK-DRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYH 197 (741)
Q Consensus 120 ~~pvDly~LmDlS~SM~-ddl-~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~ 197 (741)
..|+||+||+|.|+||. .++ +.+|..+..|++.|.--....|+|+..|.+.+.
T Consensus 16 ~~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~------------------------- 70 (266)
T 4hqo_A 16 NEQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTT------------------------- 70 (266)
T ss_dssp CCCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEE-------------------------
T ss_pred CCceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcc-------------------------
Confidence 35899999999999998 567 478888888887775334689999999998632
Q ss_pred eeecCCcc----HHHHHHhcccee----eccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCcc
Q psy12966 198 NVMSLSQD----TSRFSAQVKGAN----VSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLG 269 (741)
Q Consensus 198 ~~l~lT~d----~~~F~~~v~~~~----isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~ 269 (741)
..++|++. ...+.+.|+.+. ..|+-+.-+ +|..+++.+ ..-+.|+++.|+|||+||...+..
T Consensus 71 ~~~~l~~~~~~~~~~~~~~i~~l~~~~~~~G~T~~~~-AL~~a~~~l---~~~~~r~~~~~~iIllTDG~~~d~------ 140 (266)
T 4hqo_A 71 ELIRLGSGQSIDKRQALSKVTELRKTYTPYGTTSMTA-ALDEVQKHL---NDRVNREKAIQLVILMTDGVPNSK------ 140 (266)
T ss_dssp EEECTTSHHHHCHHHHHHHHHHHHHHCCCCSCCCHHH-HHHHHHHHH---HTTCSCTTSEEEEEEEECSCCSCH------
T ss_pred eEEecCCCCccCHHHHHHHHHHhhhccCCCCCCCHHH-HHHHHHHHH---hhccccCCCCeEEEEEccCCCCCc------
Confidence 23456653 677888888773 444322222 233333333 233577889999999999874410
Q ss_pred ceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEe
Q psy12966 270 GIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVT 317 (741)
Q Consensus 270 Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt 317 (741)
..+.+..+.|++.+|.+ |+|.
T Consensus 141 --------------------------~~~~~~a~~l~~~gi~i-~~iG 161 (266)
T 4hqo_A 141 --------------------------YRALEVANKLKQRNVRL-AVIG 161 (266)
T ss_dssp --------------------------HHHHHHHHHHHHTTCEE-EEEE
T ss_pred --------------------------hHHHHHHHHHHHCCCEE-EEEe
Confidence 13667888888999765 5553
No 29
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.85 E-value=1.2e-08 Score=106.36 Aligned_cols=133 Identities=18% Similarity=0.209 Sum_probs=90.1
Q ss_pred CCcceeEEeecCCCChHH-hH-HHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCccee
Q psy12966 120 DYPVDLYYLMDLSNSMRD-DK-DRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYH 197 (741)
Q Consensus 120 ~~pvDly~LmDlS~SM~d-dl-~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~ 197 (741)
..|+||+||+|.|+||.. ++ +.+|..+..|++.|.....+.|+|+..|.+.+..
T Consensus 19 ~~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~------------------------ 74 (281)
T 4hqf_A 19 NDEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNARE------------------------ 74 (281)
T ss_dssp CSCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEE------------------------
T ss_pred CCceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceE------------------------
Confidence 358999999999999984 56 7888888888877665555899999999986421
Q ss_pred eeecCCc----cHHHHHHhcccee----eccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCcc
Q psy12966 198 NVMSLSQ----DTSRFSAQVKGAN----VSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLG 269 (741)
Q Consensus 198 ~~l~lT~----d~~~F~~~v~~~~----isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~ 269 (741)
.++|+. +...+.+.|+.+. ..|+ -.-..+|..+++.+ ..-+.|++++|+|||+||...+.
T Consensus 75 -~~~l~~~~~~~~~~l~~~i~~l~~~~~~~G~-T~~~~aL~~a~~~l---~~~~~r~~~~~~iillTDG~~~d------- 142 (281)
T 4hqf_A 75 -IIRLHSDASKNKEKALIIIKSLLSTNLPYGK-TSLTDALLQVRKHL---NDRINRENANQLVVILTDGIPDS------- 142 (281)
T ss_dssp -EEEECSSCSSCHHHHHHHHHHHHHTTGGGCS-CCHHHHHHHHHHHH---HTSCCCTTCEEEEEEEESSCCSC-------
T ss_pred -EEEccccCccCHHHHHHHHHHHhhccCCCCC-ccHHHHHHHHHHHH---HhccCCCCCCEEEEEEecCCCCC-------
Confidence 233333 4667777777765 2343 22222333333333 23467888999999999986431
Q ss_pred ceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEE
Q psy12966 270 GIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLI 313 (741)
Q Consensus 270 Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~I 313 (741)
...+.+..+.|++.+|.++
T Consensus 143 -------------------------~~~~~~~~~~l~~~gv~i~ 161 (281)
T 4hqf_A 143 -------------------------IQDSLKESRKLSDRGVKIA 161 (281)
T ss_dssp -------------------------HHHHHHHHHHHHHTTCEEE
T ss_pred -------------------------cHHHHHHHHHHHHCCCEEE
Confidence 0126678888888887654
No 30
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.83 E-value=1.6e-08 Score=100.52 Aligned_cols=120 Identities=14% Similarity=0.182 Sum_probs=84.7
Q ss_pred CCCcceeEEeecCCCChHH-hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCccee
Q psy12966 119 EDYPVDLYYLMDLSNSMRD-DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYH 197 (741)
Q Consensus 119 ~~~pvDly~LmDlS~SM~d-dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~ 197 (741)
...|+||+||+|.|+||.. +++.+|..+..|++.|.....+.|+|+..|.+.+..-+ .+
T Consensus 12 ~~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~-------------------~~- 71 (223)
T 1q0p_A 12 PSGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWV-------------------KV- 71 (223)
T ss_dssp ---CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEE-------------------CT-
T ss_pred CCCceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceee-------------------cc-
Confidence 3458999999999999986 89999999999999998877789999999998643211 00
Q ss_pred eeecCCccHHHHHHhccceeeccC-CCCCcchHHHHHHHHhcccccccc--------CCccEEEEEecCCCCCc
Q psy12966 198 NVMSLSQDTSRFSAQVKGANVSGN-LDGPEGGFDAIMQAIVCKEEIGWR--------DRARRLLVFSTDAEFHH 262 (741)
Q Consensus 198 ~~l~lT~d~~~F~~~v~~~~isgn-~D~PE~~ldAl~qa~vC~~~igWR--------~~a~rliv~~TDa~~H~ 262 (741)
..++|.|...+.+.|+.+...+. ...--...+||..|. +.+.|+ ++++|+|||+||...+.
T Consensus 72 -~~~~~~~~~~~~~~i~~l~~~~~~~~g~T~~~~aL~~a~---~~l~~~~~~~~~~~~~~~~~iillTDG~~~~ 141 (223)
T 1q0p_A 72 -SEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVY---SMMSWPDDVPPEGWNRTRHVIILMTDGLHNM 141 (223)
T ss_dssp -TSGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHH---HHHCCTTSSCCTTGGGCEEEEEEEECSCCCS
T ss_pred -ccCCCCCHHHHHHHHHhcccccccCCCCccHHHHHHHHH---HHhhccccccccccccCCeEEEEECCCCCCC
Confidence 12466778889999988875310 111223455555554 344443 36789999999987553
No 31
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.83 E-value=1.7e-08 Score=97.46 Aligned_cols=109 Identities=21% Similarity=0.323 Sum_probs=80.2
Q ss_pred CCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceee
Q psy12966 119 EDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHN 198 (741)
Q Consensus 119 ~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~ 198 (741)
-..|+||+||+|.|+||..+...++..+..+++.+ +.++.|+|+..|.+.+. .
T Consensus 4 c~~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~~~-------------------------~ 56 (185)
T 3n2n_F 4 CYGGFDLYFILDKSGSVLHHWNEIYYFVEQLAHKF--ISPQLRMSFIVFSTRGT-------------------------T 56 (185)
T ss_dssp CBSEEEEEEEEECSGGGGGGHHHHHHHHHHHHHHC--CCTTEEEEEEEESSSEE-------------------------E
T ss_pred CCCCeeEEEEEeCCCChhhhHHHHHHHHHHHHHHh--CCCCcEEEEEEEecCce-------------------------E
Confidence 35689999999999999999999999999999887 56789999999988522 3
Q ss_pred eecCCccHHHHHHhcccee--eccCCCCCcchHHHHHHHHhccccc--ccc--CCccEEEEEecCCCC
Q psy12966 199 VMSLSQDTSRFSAQVKGAN--VSGNLDGPEGGFDAIMQAIVCKEEI--GWR--DRARRLLVFSTDAEF 260 (741)
Q Consensus 199 ~l~lT~d~~~F~~~v~~~~--isgn~D~PE~~ldAl~qa~vC~~~i--gWR--~~a~rliv~~TDa~~ 260 (741)
.++||++.+.+.+.++.+. ..|+.-. ..+||..|+ +.+ .|+ .+.+|+|||+||...
T Consensus 57 ~~~l~~~~~~~~~~i~~l~~~~~~g~T~---~~~al~~a~---~~l~~~~~~~~~~~~~iillTDG~~ 118 (185)
T 3n2n_F 57 LMKLTEDREQIRQGLEELQKVLPGGDTY---MHEGFERAS---EQIYYENRQGYRTASVIIALTDGEL 118 (185)
T ss_dssp EEEEECCHHHHHHHHHHHHTCCCCSCCC---HHHHHHHHH---HHHHHHHTTCBCEEEEEEEEECCCC
T ss_pred EeccCCCHHHHHHHHHHHhhhcCCCCcc---HHHHHHHHH---HHHhhccccCCCCCcEEEEEcCCCC
Confidence 4577889999998888866 2344333 334444443 222 222 247899999999764
No 32
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=98.83 E-value=1.9e-09 Score=105.18 Aligned_cols=114 Identities=15% Similarity=0.215 Sum_probs=86.5
Q ss_pred CCCCCeEEe-CceeeeCCCccCCcccccCCCCCCcCcccCccCCCCccccC-CCceec-CCCCccCCCCCceecCccccc
Q psy12966 460 NCSGFGTFK-CGLCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECS-GRGNCL-CNQKSLDNIVNVIISHVIVTT 536 (741)
Q Consensus 460 ~Csg~G~c~-cG~C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Cs-g~G~C~-cG~C~C~~~~~~~~G~~~~~C 536 (741)
.|+++|+|. -|.|.|.+||+|..|+-+ .|. ..|+ .+|.|+ .++|.|.. +|+|.. |
T Consensus 39 ~c~~~g~C~~~g~C~C~~G~~G~~C~~~----------~C~------~~C~~~~g~C~~~~~C~C~~---G~~G~~---C 96 (169)
T 2vj2_A 39 DFFGHYACDQNGNKTCMEGWMGPECNRA----------ICR------QGCSPKHGSCKLPGDCRCQY---GWQGLY---C 96 (169)
T ss_dssp ETTEEEEECSSCCEEECTTEESTTSCEE----------CCC------TTCCTTTEECSSTTCCEECT---TEESSS---S
T ss_pred CcCCCCEeCCCCeeECCCCCcCCCCCCC----------CCC------CCCCCCCcccCCCCeeECCC---CCCCCC---c
Confidence 578889984 689999999999999853 364 2476 788887 68999964 799999 9
Q ss_pred eeecCCCC-Cceeeec-CceEecCCceec-cc--cccCCCCccccCccccCCcccccc-----ccccccccccccCCCCC
Q psy12966 537 ECCVLDLN-TVGACVA-SAIVKTAGLVQR-VT--VAPLMTPVYLLREERCARARESVS-----AVCANVLKIAREDIPAG 606 (741)
Q Consensus 537 ecC~~~~g-G~G~C~c-g~C~C~~G~~G~-~~--~~~C~~~~~~~~~~~Csg~G~C~c-----G~C~~~~~C~~~~~~gy 606 (741)
+.|..... .+|+|+- .+|.|.+||+|. +. ...|... ..|..+|+|+. .+|. | .+||
T Consensus 97 ~~C~~~~~C~~g~C~~~~~C~C~~G~~G~~C~~~~~~C~~~------~~C~~~g~C~~~~~~~~~C~----C----~~G~ 162 (169)
T 2vj2_A 97 DKCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTH------QPCLNGGTCSNTGPDKYQCS----C----PEGY 162 (169)
T ss_dssp CEECCCTTCSSEECSSTTCCEECTTEETTTTCEESCHHHHT------CCCCTTCEEEECSTTCEEEE----C----CTTC
T ss_pred ccCCCCCCCCCCCcCCCCEEeCCCCCCCCcccCCCCCCCCC------CCCCCCCEEcCCCCCCcEeE----C----CCCC
Confidence 87644332 5788873 699999999993 22 2345221 46999999974 6899 9 8999
Q ss_pred ccc
Q psy12966 607 SAR 609 (741)
Q Consensus 607 ~G~ 609 (741)
+|+
T Consensus 163 ~G~ 165 (169)
T 2vj2_A 163 SGP 165 (169)
T ss_dssp CST
T ss_pred cCc
Confidence 995
No 33
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.83 E-value=4.7e-08 Score=109.84 Aligned_cols=117 Identities=16% Similarity=0.255 Sum_probs=85.0
Q ss_pred eccCCCcceeEEeecCCCChHH-hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCc
Q psy12966 116 AQAEDYPVDLYYLMDLSNSMRD-DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPY 194 (741)
Q Consensus 116 ~~~~~~pvDly~LmDlS~SM~d-dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f 194 (741)
+..+..++||+||+|.|+||.. +++.+|+.+..|++.|.....+.|+|+..|.+.+.
T Consensus 3 ~~~~~~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~---------------------- 60 (509)
T 2odp_A 3 QIQRSGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPK---------------------- 60 (509)
T ss_dssp ECCSSSEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEE----------------------
T ss_pred EecCCCCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCc----------------------
Confidence 3445668999999999999986 89999999999999998777899999999988532
Q ss_pred ceeeeecCC----ccHHHHHHhccceeeccCCC-CCcchHHHHHHHHhccccc------------cccCCccEEEEEecC
Q psy12966 195 GYHNVMSLS----QDTSRFSAQVKGANVSGNLD-GPEGGFDAIMQAIVCKEEI------------GWRDRARRLLVFSTD 257 (741)
Q Consensus 195 ~f~~~l~lT----~d~~~F~~~v~~~~isgn~D-~PE~~ldAl~qa~vC~~~i------------gWR~~a~rliv~~TD 257 (741)
..++|+ .|.+.+.+.|+.+...+..+ .--...+||..|. +.+ .|+ +.+|+|||+||
T Consensus 61 ---~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~---~~l~~~~~~~~~~~~~~~-~~~~~iillTD 133 (509)
T 2odp_A 61 ---VLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVY---LMMNNQMRLLGMETMAWQ-EIRHAIILLTD 133 (509)
T ss_dssp ---EEECTTSGGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHH---HHHHHHHHHHCTTSHHHH-TEEEEEEEESC
T ss_pred ---eeEeccCCCCCCHHHHHHHHHhcccccCCCCCCccHHHHHHHHH---HHHhhccccccccccccc-ccceEEEEECC
Confidence 223444 38899999999988763211 1122344444443 233 233 47899999999
Q ss_pred CCCC
Q psy12966 258 AEFH 261 (741)
Q Consensus 258 a~~H 261 (741)
...+
T Consensus 134 G~~~ 137 (509)
T 2odp_A 134 GKSN 137 (509)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 8754
No 34
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.80 E-value=2.6e-08 Score=96.03 Aligned_cols=106 Identities=21% Similarity=0.324 Sum_probs=75.9
Q ss_pred CcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeee
Q psy12966 121 YPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVM 200 (741)
Q Consensus 121 ~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l 200 (741)
.|+||+||+|.|+||.......+..+..++..+ +..+.|+|+..|.+.+. ..+
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~~~-------------------------~~~ 57 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIEIYNFVQQLAERF--VSPEMRLSFIVFSSQAT-------------------------IIL 57 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHHHHHHHHHHHHHC--CCTTEEEEEEEESSSEE-------------------------EEE
T ss_pred CceeEEEEEECCCCcccCHHHHHHHHHHHHHHh--cCCCceEEEEEeCCCce-------------------------EEE
Confidence 589999999999999987777777777777776 34789999999987522 245
Q ss_pred cCCccHHHHHHhcccee---eccCCCCCcchHHHHHHHHhcccccc--ccCCccEEEEEecCCCC
Q psy12966 201 SLSQDTSRFSAQVKGAN---VSGNLDGPEGGFDAIMQAIVCKEEIG--WRDRARRLLVFSTDAEF 260 (741)
Q Consensus 201 ~lT~d~~~F~~~v~~~~---isgn~D~PE~~ldAl~qa~vC~~~ig--WR~~a~rliv~~TDa~~ 260 (741)
+||.+...+.+.++.+. ..|+ -...+||..|+ +.+. ++++.+++|||+||...
T Consensus 58 ~~~~~~~~~~~~l~~l~~~~~~g~----T~~~~al~~a~---~~l~~~~~~~~~~~iiliTDG~~ 115 (182)
T 1shu_X 58 PLTGDRGKISKGLEDLKRVSPVGE----TYIHEGLKLAN---EQIQKAGGLKTSSIIIALTDGKL 115 (182)
T ss_dssp EEECCHHHHHHHHHHHHTCCCCSC----CCHHHHHHHHH---HHHHHHTGGGSCEEEEEEECCCC
T ss_pred CCCCCHHHHHHHHHhcccCCCCCC----chHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCc
Confidence 66777888877777654 3343 22345555554 2333 33678999999999863
No 35
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.79 E-value=3.6e-08 Score=99.09 Aligned_cols=135 Identities=19% Similarity=0.217 Sum_probs=92.7
Q ss_pred CcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeee
Q psy12966 121 YPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVM 200 (741)
Q Consensus 121 ~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l 200 (741)
.|+||+||+|.|+||. .++.+|..+..|++.|.....+.|+|+..|.+.+.. .+
T Consensus 21 ~~~div~vlD~SgSM~-~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~-------------------------~~ 74 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIY-PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTH-------------------------EF 74 (223)
T ss_dssp -CEEEEEEEECSTTCC-CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEE-------------------------EE
T ss_pred CcceEEEEEECCCChh-hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccE-------------------------EE
Confidence 3799999999999999 588899888888876653357899999999886321 22
Q ss_pred cCC--ccHHHHHHhccceeeccCCCCCcchHHHHHHHHh--ccccccccCCccEEEEEecCCCCCcCCCCCccceecCCC
Q psy12966 201 SLS--QDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIV--CKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPND 276 (741)
Q Consensus 201 ~lT--~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~v--C~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnD 276 (741)
+|+ .+...+.+.|+.+...|+.. -...+||..|.- =...-|+|++++|+|||+||...+.
T Consensus 75 ~l~~~~~~~~~~~~i~~l~~~gG~~--T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~-------------- 138 (223)
T 2b2x_A 75 NLNKYSSTEEVLVAANKIVQRGGRQ--TMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHD-------------- 138 (223)
T ss_dssp CTTTCCSHHHHHHHHTTCCCCCCSS--CCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTT--------------
T ss_pred ecCCCCCHHHHHHHHHhhhccCCCC--ccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCC--------------
Confidence 332 35677888888776444311 224556666651 0112257889999999999976432
Q ss_pred CcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEE
Q psy12966 277 GLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAV 316 (741)
Q Consensus 277 g~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifav 316 (741)
+ +.+.++.+.+++++|.+ |+|
T Consensus 139 ~------------------~~~~~~~~~~~~~gi~v-~~i 159 (223)
T 2b2x_A 139 N------------------YRLKQVIQDCEDENIQR-FSI 159 (223)
T ss_dssp G------------------GGHHHHHHHHHTTTEEE-EEE
T ss_pred C------------------ccHHHHHHHHHHCCCEE-EEE
Confidence 1 12567888899998865 444
No 36
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.79 E-value=3.8e-08 Score=98.06 Aligned_cols=136 Identities=19% Similarity=0.227 Sum_probs=92.5
Q ss_pred CcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeee
Q psy12966 121 YPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVM 200 (741)
Q Consensus 121 ~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l 200 (741)
.|+||+||+|.|+||. .++.+|..+..|++.|.....+.|+|+..|.+.+.. .+
T Consensus 6 ~~~div~vlD~SgSm~-~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~-------------------------~~ 59 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIY-PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTH-------------------------EF 59 (213)
T ss_dssp -CEEEEEEEECCTTCC-CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEE-------------------------EE
T ss_pred CCccEEEEEECCCChh-hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccE-------------------------EE
Confidence 3799999999999999 688899888888876653457899999999886322 22
Q ss_pred cCC--ccHHHHHHhccceeeccCCCCCcchHHHHHHHHh--ccccccccCCccEEEEEecCCCCCcCCCCCccceecCCC
Q psy12966 201 SLS--QDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIV--CKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPND 276 (741)
Q Consensus 201 ~lT--~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~v--C~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnD 276 (741)
+|+ .+...+.+.|+.+...|+.. -....||..|.- =...-|+|+++.|+|||+||...+.
T Consensus 60 ~l~~~~~~~~~~~~i~~l~~~~G~~--T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~-------------- 123 (213)
T 1pt6_A 60 NLNKYSSTEEVLVAAKKIVQRGGRQ--TMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHD-------------- 123 (213)
T ss_dssp CTTTCSSHHHHHHHHHTCCCCCCSS--CCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSC--------------
T ss_pred eccccCCHHHHHHHHHhccCCCCCc--ccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCC--------------
Confidence 332 35677888888776444311 123456666551 0112357889999999999986431
Q ss_pred CcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEe
Q psy12966 277 GLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVT 317 (741)
Q Consensus 277 g~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt 317 (741)
+ +.+.++.+.+++++|.+ |+|.
T Consensus 124 ~------------------~~~~~~~~~~~~~gi~i-~~ig 145 (213)
T 1pt6_A 124 N------------------HRLKKVIQDCEDENIQR-FSIA 145 (213)
T ss_dssp S------------------HHHHHHHHHHHHTTEEE-EEEE
T ss_pred C------------------ccHHHHHHHHHHCCCEE-EEEE
Confidence 1 02567788888988764 5543
No 37
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.74 E-value=7e-08 Score=113.20 Aligned_cols=116 Identities=15% Similarity=0.174 Sum_probs=86.4
Q ss_pred ccCCCcceeEEeecCCCCh-HHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcc
Q psy12966 117 QAEDYPVDLYYLMDLSNSM-RDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYG 195 (741)
Q Consensus 117 ~~~~~pvDly~LmDlS~SM-~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~ 195 (741)
.....++||+||||.|+|| .++++.+|+.+..|++.|.....+.|+|+..|.+.+.
T Consensus 238 ~~~~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~----------------------- 294 (741)
T 3hrz_D 238 LDPSGSMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPK----------------------- 294 (741)
T ss_dssp CCTTCEEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE-----------------------
T ss_pred cCCCCceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCc-----------------------
Confidence 3456689999999999999 6679999999999999998877789999999988522
Q ss_pred eeeeecCCc----cHHHHHHhccceee-----ccCCCCCcchHHHHHHHHhccccc--------cccCCccEEEEEecCC
Q psy12966 196 YHNVMSLSQ----DTSRFSAQVKGANV-----SGNLDGPEGGFDAIMQAIVCKEEI--------GWRDRARRLLVFSTDA 258 (741)
Q Consensus 196 f~~~l~lT~----d~~~F~~~v~~~~i-----sgn~D~PE~~ldAl~qa~vC~~~i--------gWR~~a~rliv~~TDa 258 (741)
..++||. |.+.+.+.|+.+.. .|+ -...+||..|+ +.+ +-|++++|+|||+||.
T Consensus 295 --~~~~l~~~~~~~~~~~~~~i~~l~~~~~~~~gg----T~~~~aL~~a~---~~l~~~~~~~~~~~~~~~~~iillTDG 365 (741)
T 3hrz_D 295 --IWVKVSEADSSNADWVTKQLNEINYEDHKLKSG----TNTKKALQAVY---SMMSWPDDVPPEGWNRTRHVIILMTDG 365 (741)
T ss_dssp --EEECTTSGGGGCHHHHHHHHTTCCGGGGSSSCC----CCHHHHHHHHH---HHHCCC--CCCTTGGGEEEEEEEEECS
T ss_pred --eeEeecccCCcCHHHHHHHHHhcccccccCCCC----hHHHHHHHHHH---HHHhhhhhccccchhccCeEEEEECCC
Confidence 2345555 78889999998873 333 22455555554 233 1234578999999999
Q ss_pred CCCcCC
Q psy12966 259 EFHHAG 264 (741)
Q Consensus 259 ~~H~ag 264 (741)
..+..+
T Consensus 366 ~~n~g~ 371 (741)
T 3hrz_D 366 LHNMGG 371 (741)
T ss_dssp CCCSSS
T ss_pred ccccCC
Confidence 765443
No 38
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.73 E-value=5.7e-07 Score=101.11 Aligned_cols=186 Identities=10% Similarity=0.047 Sum_probs=120.5
Q ss_pred CCcceeEEeecCCCChH---HhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcce
Q psy12966 120 DYPVDLYYLMDLSNSMR---DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGY 196 (741)
Q Consensus 120 ~~pvDly~LmDlS~SM~---ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f 196 (741)
..|+||+||+|.|+||. .-|+.+|..+..|++.| ..+-|+|+..|.+....
T Consensus 75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L---~~~drv~lV~Fs~~a~~----------------------- 128 (464)
T 4fx5_A 75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTL---TDGAFFAVVAGTEGARV----------------------- 128 (464)
T ss_dssp -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHS---CTTCEEEEEEESSSEEE-----------------------
T ss_pred CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhC---CCCCEEEEEEEcCceEE-----------------------
Confidence 35699999999999998 56888888888876554 46779999999886321
Q ss_pred eeeecCC--------ccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCc
Q psy12966 197 HNVMSLS--------QDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKL 268 (741)
Q Consensus 197 ~~~l~lT--------~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L 268 (741)
.+++| .+...+.+.|+.+...|+ -...+||..|+ +.+..+++..+.|||+||.....
T Consensus 129 --~~p~t~~l~~~~~~~~~~l~~~I~~L~~~Gg----T~l~~aL~~A~---~~l~~~~~~~~~IILLTDG~~~~------ 193 (464)
T 4fx5_A 129 --VYPTGGQLLRADYQSRAAAKEAVGRLHANGG----TAMGRWLAQAG---RIFDTAPSAIKHAILLTDGKDES------ 193 (464)
T ss_dssp --EESSSSSCEECSHHHHHHHHHHHHTCCCCSC----CCHHHHHHHHH---HHHTTCTTSEEEEEEEESSCCTT------
T ss_pred --EecCCcccccCCHHHHHHHHHHHHcCCCCCC----CcHHHHHHHHH---HHHhcCCCCCCEEEEEcCCCCCC------
Confidence 12332 578888999988887665 23566777666 46667778889999999986321
Q ss_pred cceecCCCCcccccCCCCccccccCCCCCHHHHHHHHH--hcCccEEEEEe--cc-hhhhHHHHhhcccCceeeeccCCc
Q psy12966 269 GGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVK--QNSINLIFAVT--AE-QIGVYERLKTHIEGSSSGTLTNDS 343 (741)
Q Consensus 269 ~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~--e~~I~~Ifavt--~~-~~~~Y~~l~~~i~gs~vg~L~~dS 343 (741)
+ ....+...+. +.+ +.||++- .. ....-+.++..-.|... ...|.
T Consensus 194 --------~-------------------~~~~l~~~~~a~~~~-i~i~tiGiG~~~d~~~L~~IA~~tgG~~~--~v~d~ 243 (464)
T 4fx5_A 194 --------E-------------------TPADLARAIQSSIGN-FTADCRGIGEDWEPKELRKIADALLGTVG--IIRDP 243 (464)
T ss_dssp --------S-------------------CHHHHHHHHHHHTTT-CEEEEEEESSSSCHHHHHHHHHHTTCCEE--EESSG
T ss_pred --------C-------------------ChHHHHHHHHHhcCC-CeEEEEEeCCccCHHHHHHHHHhCCCEEE--EcCCH
Confidence 0 1122333332 334 4455553 22 22344556655555433 23567
Q ss_pred chHHHHHHHHhhhccc----eEEeeeCCCCceEEEEE
Q psy12966 344 SNVVDLVKDQYNKISS----SVEMKDTSSSAVKVTYH 376 (741)
Q Consensus 344 sNiv~lI~~aY~~i~s----~v~l~~~~~~~~~v~~~ 376 (741)
..+.+.+.+.+..+.+ .+.|....|+++.+.+-
T Consensus 244 ~~L~~~f~~i~~~~~s~~~~dv~l~l~~~~g~~v~~v 280 (464)
T 4fx5_A 244 ATLAEDFREMTAKSMGKEVADVALRLWAPKGATIRYV 280 (464)
T ss_dssp GGHHHHHHHHHHHHHTCCEEEEEEEEECCTTCEEEEE
T ss_pred HHHHHHHHHHHHHhhchheeeeEEEEEeCCCcEEEEE
Confidence 7777777666666544 46676666888877655
No 39
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=98.73 E-value=6.5e-08 Score=95.74 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=83.1
Q ss_pred CCCcceeEEeecCCCChH-HhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCccee
Q psy12966 119 EDYPVDLYYLMDLSNSMR-DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYH 197 (741)
Q Consensus 119 ~~~pvDly~LmDlS~SM~-ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~ 197 (741)
...|+||+||+|.|+||. ++++.+|+.+..+++.|.-...+.|+|+..|.+.+..
T Consensus 18 ~~~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~------------------------ 73 (199)
T 3zqk_A 18 NSMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTV------------------------ 73 (199)
T ss_dssp -CCCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEE------------------------
T ss_pred CCCCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccE------------------------
Confidence 456899999999999998 4699999999998888754457899999999986332
Q ss_pred eeecCCc--cHHHHHHhccceeeccCCCCCcchHHHHHHHHh--ccccccccCCccEEEEEecCCCC
Q psy12966 198 NVMSLSQ--DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIV--CKEEIGWRDRARRLLVFSTDAEF 260 (741)
Q Consensus 198 ~~l~lT~--d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~v--C~~~igWR~~a~rliv~~TDa~~ 260 (741)
.++|++ +.+.+.+.|+.+...|+.. -...+||..|.- -...-|.|+++.|+|||+||...
T Consensus 74 -~~~l~~~~~~~~~~~~i~~l~~~gg~~--T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~ 137 (199)
T 3zqk_A 74 -EYPFSEAQSKGDILQRLREIRYQGGNR--TNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPA 137 (199)
T ss_dssp -EECTTSCCCHHHHHHHHHHCCCCCCSC--CCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCC
T ss_pred -EEecCCcCCHHHHHHHHHhCcCCCCCc--ChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCC
Confidence 234444 7788888998877555311 124566665541 11124678889999999999863
No 40
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.70 E-value=2.6e-07 Score=103.24 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=85.4
Q ss_pred cceeEEeecCCCChH-HhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeee
Q psy12966 122 PVDLYYLMDLSNSMR-DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVM 200 (741)
Q Consensus 122 pvDly~LmDlS~SM~-ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l 200 (741)
|+||+||+|.|+||. +.++.+|..+..|++.|.....+.|+|+..|.+.+..-+ .+ ..
T Consensus 1 ~~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~-------------------~~--~~ 59 (497)
T 1rrk_A 1 SMNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWV-------------------KV--SE 59 (497)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE-------------------CT--TS
T ss_pred CeeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEee-------------------cc--cc
Confidence 789999999999996 579999999999999998877889999999998532211 00 12
Q ss_pred cCCccHHHHHHhccceeeccC-CCCCcchHHHHHHHHhcccccccc--------CCccEEEEEecCCCCCc
Q psy12966 201 SLSQDTSRFSAQVKGANVSGN-LDGPEGGFDAIMQAIVCKEEIGWR--------DRARRLLVFSTDAEFHH 262 (741)
Q Consensus 201 ~lT~d~~~F~~~v~~~~isgn-~D~PE~~ldAl~qa~vC~~~igWR--------~~a~rliv~~TDa~~H~ 262 (741)
++|.|.+.+.+.|+.+...+. .-.--...+||..|. +.+.|+ ++++|+|||+||...+.
T Consensus 60 ~~~~~~~~~~~~l~~l~~~~~~~~g~T~~~~al~~a~---~~l~~~~~~~~~~~~~~~~~iillTDG~~~~ 127 (497)
T 1rrk_A 60 ADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVY---SMMSWPDDVPPEGWNRTRHVIILMTDGLHNM 127 (497)
T ss_dssp GGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHH---HHHCCC------CGGGCEEEEEEEECSCCCS
T ss_pred ccccCHHHHHHHHHhCcCccccccCccCHHHHHHHHH---HHhhhhhccccccccccceEEEEEeCCCccc
Confidence 567888999999988875432 111133455666555 455553 34789999999997554
No 41
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.59 E-value=1.5e-07 Score=91.46 Aligned_cols=109 Identities=21% Similarity=0.258 Sum_probs=73.2
Q ss_pred cceeEEeecCCCChHH-hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceeeee
Q psy12966 122 PVDLYYLMDLSNSMRD-DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVM 200 (741)
Q Consensus 122 pvDly~LmDlS~SM~d-dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~~l 200 (741)
|+||+||+|.|+||.. +++.+|..+..|++.|. ..+.|+|+..|.+.+.. .+
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~--~~~~rv~vv~fs~~~~~-------------------------~~ 54 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCS--NTSYQFAAVQFSTSYKT-------------------------EF 54 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTT--TSSEEEEEEEESSSEEE-------------------------EE
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhC--CCCeEEEEEEECCceeE-------------------------EE
Confidence 7999999999999986 68899999888888773 45789999999986432 23
Q ss_pred cCCccH--HHHHHhcccee-eccCCCCCcchHHHHHHHHh--ccccccccCCccEEEEEecCCCCC
Q psy12966 201 SLSQDT--SRFSAQVKGAN-VSGNLDGPEGGFDAIMQAIV--CKEEIGWRDRARRLLVFSTDAEFH 261 (741)
Q Consensus 201 ~lT~d~--~~F~~~v~~~~-isgn~D~PE~~ldAl~qa~v--C~~~igWR~~a~rliv~~TDa~~H 261 (741)
+|+... ..+.+.++.+. +.|+ -..-+||..|.- =...-|||+++.|+|||+||...+
T Consensus 55 ~l~~~~~~~~~~~~~~~i~~~~g~----T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~ 116 (179)
T 1mjn_A 55 DFSDYVKRKDPDALLKHVKHMLLL----TNTFGAINYVATEVFREELGARPDATKVLIIITDGEAT 116 (179)
T ss_dssp CHHHHHHHCCHHHHHTTCCCCCBC----CCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCS
T ss_pred cCcccCCHHHHHHHHHhcccCCCC----ChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCC
Confidence 444311 12333344333 2232 224456665541 112347999999999999998754
No 42
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=98.56 E-value=1.8e-08 Score=98.20 Aligned_cols=118 Identities=13% Similarity=0.140 Sum_probs=82.3
Q ss_pred ceeeeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceec-CCCCccCCCCCceecCcccccee--ecCCCC-C
Q psy12966 470 GLCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCL-CNQKSLDNIVNVIISHVIVTTEC--CVLDLN-T 545 (741)
Q Consensus 470 G~C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~-cG~C~C~~~~~~~~G~~~~~Cec--C~~~~g-G 545 (741)
..|.|.+||+|..|+- .|... ..|+++|+|. .|+|+|.. +|+|.. |+. |..... .
T Consensus 17 ~~c~C~~g~~G~~C~~-----------~C~~~----~~c~~~g~C~~~g~C~C~~---G~~G~~---C~~~~C~~~C~~~ 75 (169)
T 2vj2_A 17 SAVTCDDYYYGFGCNK-----------FCRPR----DDFFGHYACDQNGNKTCME---GWMGPE---CNRAICRQGCSPK 75 (169)
T ss_dssp ----CCTTEETTTTCE-----------ECCCE----EETTEEEEECSSCCEEECT---TEESTT---SCEECCCTTCCTT
T ss_pred eeeeCCCcCcCCCccc-----------ccCCC----CCcCCCCEeCCCCeeECCC---CCcCCC---CCCCCCCCCCCCC
Confidence 4689999999999872 35421 3699999996 89999964 799999 997 876554 7
Q ss_pred ceeee-cCceEecCCceeccccccCCCCccccCccccCCcccccc-ccccccccccccCCCCCcccCCCC---C----cC
Q psy12966 546 VGACV-ASAIVKTAGLVQRVTVAPLMTPVYLLREERCARARESVS-AVCANVLKIAREDIPAGSARNARP---V----LE 616 (741)
Q Consensus 546 ~G~C~-cg~C~C~~G~~G~~~~~~C~~~~~~~~~~~Csg~G~C~c-G~C~~~~~C~~~~~~gy~G~e~Cp---~----~~ 616 (741)
||.|. .+.|.|.+||+|.... .|... ..|. +|+|+- ++|. | .+||+|. .|. . ..
T Consensus 76 ~g~C~~~~~C~C~~G~~G~~C~-~C~~~------~~C~-~g~C~~~~~C~----C----~~G~~G~-~C~~~~~~C~~~~ 138 (169)
T 2vj2_A 76 HGSCKLPGDCRCQYGWQGLYCD-KCIPH------PGCV-HGICNEPWQCL----C----ETNWGGQ-LCDKDLNYCGTHQ 138 (169)
T ss_dssp TEECSSTTCCEECTTEESSSSC-EECCC------TTCS-SEECSSTTCCE----E----CTTEETT-TTCEESCHHHHTC
T ss_pred CcccCCCCeeECCCCCCCCCcc-cCCCC------CCCC-CCCcCCCCEEe----C----CCCCCCC-cccCCCCCCCCCC
Confidence 89997 5899999999994322 24321 2365 567764 7899 9 8999996 232 1 24
Q ss_pred CCCCCCcee
Q psy12966 617 DVQEFKNCI 625 (741)
Q Consensus 617 ~C~~~~~Cv 625 (741)
+|..++.|+
T Consensus 139 ~C~~~g~C~ 147 (169)
T 2vj2_A 139 PCLNGGTCS 147 (169)
T ss_dssp CCCTTCEEE
T ss_pred CCCCCCEEc
Confidence 677766665
No 43
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.51 E-value=2.2e-07 Score=90.42 Aligned_cols=114 Identities=15% Similarity=0.069 Sum_probs=79.7
Q ss_pred CCCcceeEEeecCCCCh-HHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCccee
Q psy12966 119 EDYPVDLYYLMDLSNSM-RDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYH 197 (741)
Q Consensus 119 ~~~pvDly~LmDlS~SM-~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~ 197 (741)
+..|+|++||+|.|+|| .+-++.+|..+..|++.+ .....|+|+..|.+... +
T Consensus 2 ~~~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~--~~~~~~v~lv~f~~~~~------------------------~ 55 (189)
T 2x31_A 2 EMSDRVLIFAVDASGSAAVARLSEAKGAVELLLGRA--YAARDHVSLITFRGTAA------------------------Q 55 (189)
T ss_dssp CSSCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHS--CTTTSCCCEEEESBSCC------------------------C
T ss_pred CCCCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHh--cCCCcEEEEEEECCCCc------------------------e
Confidence 35689999999999999 467788888888877655 35778999999986311 1
Q ss_pred eeecCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcC
Q psy12966 198 NVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHA 263 (741)
Q Consensus 198 ~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~a 263 (741)
..+++|.+...+.+.|+.+...|+-+..++...| ++.+. . .++++.+++|||+||...+..
T Consensus 56 ~~~~~~~~~~~~~~~i~~l~~~g~T~~~~al~~a-~~~l~---~-~~~~~~~~~ivliTDG~~~~~ 116 (189)
T 2x31_A 56 VLLQPSRSLTQTKRQLQGLPGGGGTPLASGMEMA-MVTAK---Q-ARSRGMTPTIALLTDGRGNIA 116 (189)
T ss_dssp BCTTTCSCHHHHHHHHHHCCCCBCCCCHHHHHHH-HHHHH---T-CTTTCSSEEEEECCBSCCSSC
T ss_pred EecCCCCCHHHHHHHHhcCCCCCCCCHHHHHHHH-HHHHH---h-ccCCCCceEEEEECCCCCCCC
Confidence 2346778899999999988877765544443333 33221 1 344567999999999987653
No 44
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=98.36 E-value=4.4e-07 Score=100.87 Aligned_cols=94 Identities=20% Similarity=0.332 Sum_probs=65.7
Q ss_pred CCCCCeEEeC--ceeeeCCCccCCccc--ccCCCCCCcCcccCccCCCCccccCCCceec--CCCCccCCCCCceecCcc
Q psy12966 460 NCSGFGTFKC--GLCECDQSHFGRRCE--CDAESSQGITSTGCKADANSTMECSGRGNCL--CNQKSLDNIVNVIISHVI 533 (741)
Q Consensus 460 ~Csg~G~c~c--G~C~C~~G~~G~~Ce--C~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~--cG~C~C~~~~~~~~G~~~ 533 (741)
.|+++|+|.- |.|.|.+||.|..|+ |+.+..+......|.. ...|.++|.|. -++|.|.. +|+|..
T Consensus 204 ~C~~~G~C~~~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~----~~~C~~~g~C~~~~~~C~C~~---G~~G~~- 275 (423)
T 2gy5_A 204 ACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSG----QEGCKSYVFCLPDPYGCSCAT---GWKGLQ- 275 (423)
T ss_dssp CCCTTCEECTTTCCEECCTTEESTTSCEECCTTEESTTSCEECCS----TTTTTTCCEEETTTTEEECCB---TCBSGG-
T ss_pred CCCCCCEEECCCCcEeCCCCccCCCcccccCCCCCCCCcCccCCC----CCCCCCCCEECCCCCeEEeCC---Cccccc-
Confidence 5889999984 899999999999998 6543222111123431 13588888886 57899954 688888
Q ss_pred cccee-ecCC-----------CCCceeeec-CceEecCCceec
Q psy12966 534 VTTEC-CVLD-----------LNTVGACVA-SAIVKTAGLVQR 563 (741)
Q Consensus 534 ~~Cec-C~~~-----------~gG~G~C~c-g~C~C~~G~~G~ 563 (741)
|+. |+.. ...+|.|.- ..|.|.+||+|.
T Consensus 276 --C~~~C~~G~~G~~C~~~C~C~ngg~C~~~~~C~C~~G~~G~ 316 (423)
T 2gy5_A 276 --CNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGL 316 (423)
T ss_dssp --GCBCCCTTBCSBTTCCBCCCTTCCEEETTTEEECCTTCBST
T ss_pred --ccCccCCCCcCCcccccccCCCCCEecCCCceECCCCCcCC
Confidence 876 6431 124678874 459999999993
No 45
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=98.25 E-value=1.2e-06 Score=97.28 Aligned_cols=107 Identities=15% Similarity=0.256 Sum_probs=77.0
Q ss_pred eeeeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceec--CCCCccCCCCCceecCcccccee-ecC------
Q psy12966 471 LCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCL--CNQKSLDNIVNVIISHVIVTTEC-CVL------ 541 (741)
Q Consensus 471 ~C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~--cG~C~C~~~~~~~~G~~~~~Cec-C~~------ 541 (741)
.|.|.+||+|+.|+- .|. .|+++|+|. .|+|.|.. +|+|.. |+. |+.
T Consensus 186 ~c~C~~g~~G~~C~~-----------~C~-------~C~~~G~C~~~~g~C~C~~---G~~G~~---Ce~~C~~g~~g~~ 241 (423)
T 2gy5_A 186 VRRCEAQKWGPECNH-----------LCT-------ACMNNGVCHEDTGECICPP---GFMGRT---CEKACELHTFGRT 241 (423)
T ss_dssp ECSSCTTEESTTSCE-----------ECC-------CCCTTCEECTTTCCEECCT---TEESTT---SCEECCTTEESTT
T ss_pred CCcCCCCCCCCCCCC-----------CCC-------CCCCCCEEECCCCcEeCCC---CccCCC---cccccCCCCCCCC
Confidence 589999999999873 352 488899998 58999964 799999 985 432
Q ss_pred -------CC--CCceeee--cCceEecCCceeccccccCCCCcccc-C--ccccCCcccccc-ccccccccccccCCCCC
Q psy12966 542 -------DL--NTVGACV--ASAIVKTAGLVQRVTVAPLMTPVYLL-R--EERCARARESVS-AVCANVLKIAREDIPAG 606 (741)
Q Consensus 542 -------~~--gG~G~C~--cg~C~C~~G~~G~~~~~~C~~~~~~~-~--~~~Csg~G~C~c-G~C~~~~~C~~~~~~gy 606 (741)
.. ..+|.|. -+.|.|.+||+|......|....++. . .-.|.++|+|+. ..|. | .+||
T Consensus 242 C~~~C~~~~~C~~~g~C~~~~~~C~C~~G~~G~~C~~~C~~G~~G~~C~~~C~C~ngg~C~~~~~C~----C----~~G~ 313 (423)
T 2gy5_A 242 CKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCL----C----SPGW 313 (423)
T ss_dssp SCEECCSTTTTTTCCEEETTTTEEECCBTCBSGGGCBCCCTTBCSBTTCCBCCCTTCCEEETTTEEE----C----CTTC
T ss_pred cCccCCCCCCCCCCCEECCCCCeEEeCCCcccccccCccCCCCcCCcccccccCCCCCEecCCCceE----C----CCCC
Confidence 11 1357776 36899999999955555675543211 1 015778889975 4499 9 8999
Q ss_pred ccc
Q psy12966 607 SAR 609 (741)
Q Consensus 607 ~G~ 609 (741)
.|.
T Consensus 314 ~G~ 316 (423)
T 2gy5_A 314 QGL 316 (423)
T ss_dssp BST
T ss_pred cCC
Confidence 998
No 46
>2jf1_T Integrin beta-2 subunit; actin-binding, cell adhesion, transmembrane, acetylation, polymorphism, cytoskeleton, glycoprotein, filamin, complex; 2.2A {Homo sapiens}
Probab=98.20 E-value=3.8e-07 Score=66.60 Aligned_cols=21 Identities=33% Similarity=0.808 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcccCCCCCCCCC
Q psy12966 720 FAKFEKERMLAKWDTKLNSLIY 741 (741)
Q Consensus 720 ~~kFekE~~~akw~~~~NPly~ 741 (741)
|+|||+|++++||+ ++||||+
T Consensus 1 yakFe~e~~~~kw~-~~NPlYk 21 (35)
T 2jf1_T 1 YRRFEKEKLKSQWN-NDNPLFK 21 (35)
T ss_pred ChHHHHHHHhcccc-cCCCCcc
Confidence 79999999999999 9999996
No 47
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=98.19 E-value=1.8e-06 Score=106.35 Aligned_cols=136 Identities=15% Similarity=0.188 Sum_probs=94.3
Q ss_pred CCcceeEEeecCCCChHHh-HHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceee
Q psy12966 120 DYPVDLYYLMDLSNSMRDD-KDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHN 198 (741)
Q Consensus 120 ~~pvDly~LmDlS~SM~dd-l~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~ 198 (741)
..|+||+||+|.|+||..+ ++.+|..+.+|++.+. ....|+|+..|.+.+. .
T Consensus 128 ~~~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~--~~~~rVglV~Fs~~~~-------------------------~ 180 (1095)
T 3k6s_A 128 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQ--RPSTQFSLMQFSNKFQ-------------------------T 180 (1095)
T ss_dssp CCCEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSC--SSSEEEEEEEESSSEE-------------------------E
T ss_pred CCCccEEEEEcCCCCCChhHHHHHHHHHHHHHHhcc--ccccEEEEEEECCeEE-------------------------E
Confidence 4589999999999999974 8999998888887765 3459999999988632 3
Q ss_pred eecCCc--cHHHHHHhccceeeccCCCCCcchHHHHHHHHh--ccccccccCCccEEEEEecCCCCCcCCCCCccceecC
Q psy12966 199 VMSLSQ--DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIV--CKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKP 274 (741)
Q Consensus 199 ~l~lT~--d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~v--C~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~p 274 (741)
.++|++ +...+.+.++.+.-.|+. -...+||..|+. =...-|-|++++|+||++||...+ +
T Consensus 181 ~~~lt~~~~~~~l~~ai~~i~~~gG~---T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~--~---------- 245 (1095)
T 3k6s_A 181 HFTFEEFRRSSNPLSLLASVHQLQGF---TYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKE--G---------- 245 (1095)
T ss_dssp EECSHHHHSCSCGGGGTTTCCCCCSC---BCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCB--S----------
T ss_pred EecCcccCCHHHHHHHHhhhhcccCC---ChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcC--C----------
Confidence 445654 455566667766433332 235566666641 112346778899999999998753 1
Q ss_pred CCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEe
Q psy12966 275 NDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVT 317 (741)
Q Consensus 275 nDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt 317 (741)
|-..+.+.++.+++.+|. ||||-
T Consensus 246 -------------------d~~~~~~~a~~~r~~GI~-i~aIG 268 (1095)
T 3k6s_A 246 -------------------DSLDYKDVIPMADAAGII-RYAIG 268 (1095)
T ss_dssp -------------------CSSCHHHHHHHHHHHCEE-ECCEE
T ss_pred -------------------CchhHHHHHHHHHHCCCE-EEEEe
Confidence 111366788888888887 55553
No 48
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=98.18 E-value=6.1e-06 Score=99.39 Aligned_cols=139 Identities=18% Similarity=0.181 Sum_probs=81.6
Q ss_pred CCCcceeEEeecCCCChHHh-------HHHHHHHHHHHHHHHHhhcCceeEEeeEeeccccc--------CccccCcccc
Q psy12966 119 EDYPVDLYYLMDLSNSMRDD-------KDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVM--------PYVSMVPKNL 183 (741)
Q Consensus 119 ~~~pvDly~LmDlS~SM~dd-------l~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~--------P~~~~~p~~l 183 (741)
+..|+||+||||.|+||... |+.+|..+..|++.|.. ..+-|+|+..|.+.... ++.+-. .+.
T Consensus 221 ~~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~-~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~-g~~ 298 (893)
T 2ww8_A 221 KSVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITS-DSENRVALVTYASTIFDGTEFTVEKGVADKN-GKR 298 (893)
T ss_dssp TTCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHT-STTCEEEEEEESSSBCBSCEEEEECCEECTT-CCE
T ss_pred cCCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhc-CCCcEEEEEEecCcccccccccccccccccc-ccc
Confidence 45689999999999999765 46678888888888865 36899999999986422 111100 000
Q ss_pred cCC---CCCCCCCcce----eeeecCCccHHHHH---Hhccceee--ccCC-CCC---cchHHHHHHHHhcccccc--cc
Q psy12966 184 LEP---CAGCAAPYGY----HNVMSLSQDTSRFS---AQVKGANV--SGNL-DGP---EGGFDAIMQAIVCKEEIG--WR 245 (741)
Q Consensus 184 ~~P---c~~c~~~f~f----~~~l~lT~d~~~F~---~~v~~~~i--sgn~-D~P---E~~ldAl~qa~vC~~~ig--WR 245 (741)
.+. +..=..+|.. ...++||.|.+.+. +.|..... .|+- -.| -...+||..|+ +.+. .|
T Consensus 299 ~n~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~---~lL~~~~~ 375 (893)
T 2ww8_A 299 LNDSLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKAD---EILTQQAR 375 (893)
T ss_dssp ECCCTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHH---HHHHHHSC
T ss_pred cccccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHH---HHHHhhcc
Confidence 000 0000011110 02578998885554 66654321 1100 011 12346666665 3342 45
Q ss_pred CCccEEEEEecCCCCCc
Q psy12966 246 DRARRLLVFSTDAEFHH 262 (741)
Q Consensus 246 ~~a~rliv~~TDa~~H~ 262 (741)
++++|+|||+||..++.
T Consensus 376 ~~~~kvIILLTDG~pt~ 392 (893)
T 2ww8_A 376 QNSQKVIFHITDGVPTM 392 (893)
T ss_dssp SSSEEEEEEEESSCCSE
T ss_pred cCCCeEEEEEcCCCCCc
Confidence 68899999999997764
No 49
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.12 E-value=3.5e-05 Score=76.62 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=95.5
Q ss_pred eeEEeecCCCChHH------hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCccee
Q psy12966 124 DLYYLMDLSNSMRD------DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYH 197 (741)
Q Consensus 124 Dly~LmDlS~SM~d------dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~ 197 (741)
.++|+||+|+||.. -++..|..+..|+..+-..-+.-|+|+..|.++. +|
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~--a~---------------------- 59 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNS--PQ---------------------- 59 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTS--CC----------------------
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCC--cE----------------------
Confidence 48999999999973 4777888888888776555566899999999841 11
Q ss_pred eeecCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhcccccccc---CCccEEEEEecCCCCCcCCCCCccceecC
Q psy12966 198 NVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWR---DRARRLLVFSTDAEFHHAGDGKLGGIVKP 274 (741)
Q Consensus 198 ~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR---~~a~rliv~~TDa~~H~agDg~L~Gi~~p 274 (741)
-..+||.|...+...++.+...|+ -+..+||..|. +.+.-+ ....|+|||++|... .
T Consensus 60 ~~~plT~d~~~i~~~L~~l~~~g~----t~l~~aL~~A~---~~l~~~~~~~~~~riiil~~~~~~--~----------- 119 (192)
T 2x5n_A 60 VLSTLTRDYGKFLSAMHDLPVRGN----AKFGDGIQIAQ---LALKHRENKIQRQRIVAFVGSPIV--E----------- 119 (192)
T ss_dssp EEEEEESCHHHHHHHHTTCCCCSC----CCHHHHHHHHH---HHHHTCSCTTSEEEEEEEECSCCS--S-----------
T ss_pred EecCCCCCHHHHHHHHHcCCCCCC----chHHHHHHHHH---HHHHhccccCCCceEEEEEECCCC--C-----------
Confidence 246899999999999999877664 23455555554 222222 234577887766330 0
Q ss_pred CCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecc-hh--hhHHHHhhcc
Q psy12966 275 NDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAE-QI--GVYERLKTHI 331 (741)
Q Consensus 275 nDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~-~~--~~Y~~l~~~i 331 (741)
|-..+.++.+.+++++|.+.+..... .. . -+.|++..
T Consensus 120 -------------------~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~ 159 (192)
T 2x5n_A 120 -------------------DEKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAA 159 (192)
T ss_dssp -------------------CHHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHH
T ss_pred -------------------CchhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhc
Confidence 00126778999999999887544432 21 2 44555554
No 50
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=1.4e-05 Score=83.63 Aligned_cols=148 Identities=9% Similarity=0.073 Sum_probs=99.6
Q ss_pred eEEeecCCCChHH------hHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceee
Q psy12966 125 LYYLMDLSNSMRD------DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHN 198 (741)
Q Consensus 125 ly~LmDlS~SM~d------dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~ 198 (741)
++|++|.|+||.+ -|+..|..+..|++.+.+....-++|+.+|.++.. .-
T Consensus 6 tViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~------------------------~v 61 (268)
T 4b4t_W 6 TVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANP------------------------RV 61 (268)
T ss_dssp EEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSC------------------------EE
T ss_pred EEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcc------------------------ee
Confidence 5899999999964 37788888889998888877788999999987521 12
Q ss_pred eecCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCc
Q psy12966 199 VMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGL 278 (741)
Q Consensus 199 ~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~ 278 (741)
..++|.|..++...|+.+...|+-+...|..-| ++++ +-...++.++.||++||.+++.-.
T Consensus 62 l~plT~D~~~il~aL~~l~~~G~T~l~~gL~~A-~~aL----k~~~~k~~~~rIIlf~ds~~~~~~-------------- 122 (268)
T 4b4t_W 62 LSTFTAEFGKILAGLHDTQIEGKLHMATALQIA-QLTL----KHRQNKVQHQRIVAFVCSPISDSR-------------- 122 (268)
T ss_dssp EEEEESCHHHHHHHHTTCCCCSCCCHHHHHHHH-HHHH----HTCSCTTSEEEEEEEECSCCSSCH--------------
T ss_pred ccCCcchHHHHHHHhhhcCcCCCCChHHHHHHH-HHHH----HhcccCCCceEEEEEECCCCCCCH--------------
Confidence 357899999999999999988874443333333 2233 112233556667778887744210
Q ss_pred ccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecc---hhhhHHHHhhccc
Q psy12966 279 CHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAE---QIGVYERLKTHIE 332 (741)
Q Consensus 279 Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~---~~~~Y~~l~~~i~ 332 (741)
. .+-+++++++++||.+-+..... ....-+.|.+...
T Consensus 123 ------------~-----~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~N 162 (268)
T 4b4t_W 123 ------------D-----ELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVN 162 (268)
T ss_dssp ------------H-----HHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHC
T ss_pred ------------H-----HHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhc
Confidence 0 26789999999999864433332 2233455555554
No 51
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=97.92 E-value=1.4e-05 Score=74.63 Aligned_cols=85 Identities=25% Similarity=0.412 Sum_probs=64.0
Q ss_pred CCCCCCeEEeC--c--eeeeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceecC--C--CCccCCCCCceec
Q psy12966 459 PNCSGFGTFKC--G--LCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLC--N--QKSLDNIVNVIIS 530 (741)
Q Consensus 459 ~~Csg~G~c~c--G--~C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~c--G--~C~C~~~~~~~~G 530 (741)
..|..+|+|.- | .|.|.+||.|..|+.+. ..|.. ..|.++|+|+. | +|.|.. +|+|
T Consensus 13 ~~C~~~g~C~~~~g~~~C~C~~Gy~G~~C~~~~--------~~C~~-----~~C~~~~~C~~~~g~~~C~C~~---G~~G 76 (135)
T 2vj3_A 13 NPCEHAGKCINTLGSFECQCLQGYTGPRCEIDV--------NECVS-----NPCQNDATCLDQIGEFQCICMP---GYEG 76 (135)
T ss_dssp CSSSTTCEEEECSSSEEEECCTTEESTTSCEEC--------CTTTT-----CCCCSSCEEEECSSCEEEECCT---TEES
T ss_pred CCCCCCCEeECCCCCEEEECCCCCcCCcccccC--------ccCCC-----CCCCCCCEEeCCCCCceeeCCC---CCcC
Confidence 35988999974 3 89999999999997543 34652 45888899973 2 799964 7999
Q ss_pred Ccccccee----ecCC-CCCceeeec--C--ceEecCCcee
Q psy12966 531 HVIVTTEC----CVLD-LNTVGACVA--S--AIVKTAGLVQ 562 (741)
Q Consensus 531 ~~~~~Cec----C~~~-~gG~G~C~c--g--~C~C~~G~~G 562 (741)
.. |+. |... ...+|+|.- + .|.|.+||+|
T Consensus 77 ~~---C~~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~G 114 (135)
T 2vj3_A 77 VH---CEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTG 114 (135)
T ss_dssp SS---SCEECCTTTTCCSTTTCEEEECSSCEEEECCTTEES
T ss_pred Cc---ceecCCcccCCCcCCCCEeECCCCCeEEECCCCCcC
Confidence 99 984 6432 225689973 2 7999999999
No 52
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=97.73 E-value=4.8e-05 Score=71.08 Aligned_cols=93 Identities=17% Similarity=0.343 Sum_probs=63.9
Q ss_pred CCCCCeEEeCc------eeeeCCCccCCcccccCCCCCC----cCcccCccCCCCccccCCCceec-----------CCC
Q psy12966 460 NCSGFGTFKCG------LCECDQSHFGRRCECDAESSQG----ITSTGCKADANSTMECSGRGNCL-----------CNQ 518 (741)
Q Consensus 460 ~Csg~G~c~cG------~C~C~~G~~G~~CeC~~~~~~~----~~~~~C~~~~~~~~~Csg~G~C~-----------cG~ 518 (741)
.|..+|+|.-+ .|.|.+||.|..|+-....... .....|. ...|.++|+|+ -.+
T Consensus 7 pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~-----~~~C~~~g~C~~~~~~~~~~~~~~~ 81 (143)
T 4d90_A 7 PCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCT-----PNPCHNGGTCEISEAYRGDTFIGYV 81 (143)
T ss_dssp CCGGGCEEEC-----CCEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTS-----SCCCCTTCEEEECCCEETTEECCEE
T ss_pred cCCCCCEeeCCCCCCCEEeECCCCCCCCCCccCccccccccccccCCcCC-----CCCCCCCCEecCCCccccCCCCCeE
Confidence 48888999752 6999999999999742211000 0123353 24598999997 347
Q ss_pred CccCCCCCceecCcccccee----ecCC-CCCceeeec--C--ceEecCCceec
Q psy12966 519 KSLDNIVNVIISHVIVTTEC----CVLD-LNTVGACVA--S--AIVKTAGLVQR 563 (741)
Q Consensus 519 C~C~~~~~~~~G~~~~~Cec----C~~~-~gG~G~C~c--g--~C~C~~G~~G~ 563 (741)
|.|.. +|+|.. |+. |... ...+|+|+- + .|.|.+||+|.
T Consensus 82 C~C~~---G~~G~~---C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~ 129 (143)
T 4d90_A 82 CKCPR---GFNGIH---CQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGR 129 (143)
T ss_dssp EECCT---TEESTT---SCEECCTTTTCCSCTTCEEEEETTEEEEECCTTCBST
T ss_pred eECcC---CCcCCC---cccCCCcCCCCCCCCCCEeECCCCCeEeECCCCCccC
Confidence 99964 799999 984 7532 225689973 3 69999999994
No 53
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=97.63 E-value=5.4e-05 Score=78.00 Aligned_cols=92 Identities=21% Similarity=0.182 Sum_probs=69.3
Q ss_pred CCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcceee
Q psy12966 119 EDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHN 198 (741)
Q Consensus 119 ~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~~ 198 (741)
+..|+|++||+|.|+||+..++.+|..+.+|+..+..-....++++..|.+++-. .|..
T Consensus 131 e~~~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~---------------------~~~l 189 (242)
T 3rag_A 131 DEVALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEE---------------------ATRL 189 (242)
T ss_dssp HHSCEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTC---------------------SCEE
T ss_pred ccCCCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCcc---------------------ceee
Confidence 3478999999999999999999999999999988876667899999999997411 1111
Q ss_pred eecCCccHHHHHHhccceeeccCCCCCcchHHHHHHHH
Q psy12966 199 VMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAI 236 (741)
Q Consensus 199 ~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~ 236 (741)
..++|++. .+...+..+...| -+| .-+||..|.
T Consensus 190 l~pfT~~~-~~~~~l~~L~agG--~Tp--lg~AL~~A~ 222 (242)
T 3rag_A 190 VQPFSSEV-NVAALEAELVARG--GTP--TGPAIDHAA 222 (242)
T ss_dssp EEEEESSC-CHHHHHHHCCCCS--CCC--HHHHHHHHH
T ss_pred cCCCCChH-HHHHHHhhCCCCC--CCc--HHHHHHHHH
Confidence 22667766 6666677777644 355 556777665
No 54
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=97.53 E-value=4.9e-05 Score=74.57 Aligned_cols=127 Identities=15% Similarity=0.277 Sum_probs=82.0
Q ss_pred CCCCCCCeEEeC--c--eeeeCCCccCC---cccccCCCCCCcCcccCccCCCCccccCCCceecCC---------CCcc
Q psy12966 458 SPNCSGFGTFKC--G--LCECDQSHFGR---RCECDAESSQGITSTGCKADANSTMECSGRGNCLCN---------QKSL 521 (741)
Q Consensus 458 s~~Csg~G~c~c--G--~C~C~~G~~G~---~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~cG---------~C~C 521 (741)
+..|. ||+|+- | .|.|.+||.|. .|+- . ..|..... ...|.++|+|+.. +|.|
T Consensus 10 ~~pC~-ng~C~~~~g~~~C~C~~G~~g~~~~~C~~-i--------d~C~~~~~-~~~C~~~~~C~~~~~~~~~g~y~C~C 78 (186)
T 1z1y_A 10 DTICX-NGQLVQMSNHFXCMCNEGLVHLSENTCEE-X--------NECXXETL-GXACGEFGQCIENPDPAQVNMYXCGC 78 (186)
T ss_dssp TCCCB-TEEEEECSSCEEEEECTTEEEEETTEEEE-C--------CCCSGGGT-TSEEETTEEEEECSSTTSSCSEEEEE
T ss_pred CCCCC-CCEeECCCCCeEeECCCCCccCCCCccCC-C--------CcccCCCC-CCCCCCCCEeecCCCCcCCCCEECCC
Confidence 34576 788864 2 69999999987 6762 1 34753211 1469888999732 4999
Q ss_pred CCCCCceecCcccccee----ecCC-CCCceeee----c----CceEecCCcee-ccccccCCCCccccCcccc-CCccc
Q psy12966 522 DNIVNVIISHVIVTTEC----CVLD-LNTVGACV----A----SAIVKTAGLVQ-RVTVAPLMTPVYLLREERC-ARARE 586 (741)
Q Consensus 522 ~~~~~~~~G~~~~~Cec----C~~~-~gG~G~C~----c----g~C~C~~G~~G-~~~~~~C~~~~~~~~~~~C-sg~G~ 586 (741)
.. +|.|.. |+| |... ...+|+|. - -.|.|.+||+| ..+...|...........| ..+++
T Consensus 79 ~~---G~~g~~---~~C~~d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~~~C~~~~~~ 152 (186)
T 1z1y_A 79 IE---GYTLXE---DTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEV 152 (186)
T ss_dssp CT---TEEEET---TEEEEGGGTTCCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEECCCCCCCCCTTTEE
T ss_pred CC---CCccCC---CCCCCCcCcCCCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcCCCcccccccccCcc
Confidence 64 799997 665 7543 22478997 2 27999999999 2233344221000011357 67788
Q ss_pred ccc----ccccccccccccCCCCCccc
Q psy12966 587 SVS----AVCANVLKIAREDIPAGSAR 609 (741)
Q Consensus 587 C~c----G~C~~~~~C~~~~~~gy~G~ 609 (741)
|+- -+|. | .+||.|.
T Consensus 153 C~n~~g~y~C~----C----~~G~~g~ 171 (186)
T 1z1y_A 153 CXNVEGVYXCQ----C----MEGFTFD 171 (186)
T ss_dssp EEEETTEEEEE----E----CTTCEEE
T ss_pred eecCCCCeeeE----C----CCCCccC
Confidence 873 2699 9 8999986
No 55
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=97.44 E-value=7.3e-05 Score=72.37 Aligned_cols=111 Identities=19% Similarity=0.364 Sum_probs=67.1
Q ss_pred CCCCeEEeC------cee-eeCCCccCCccc-ccCCCCCCc-C----cccCccCCCCccccCCC------ceec--CCCC
Q psy12966 461 CSGFGTFKC------GLC-ECDQSHFGRRCE-CDAESSQGI-T----STGCKADANSTMECSGR------GNCL--CNQK 519 (741)
Q Consensus 461 Csg~G~c~c------G~C-~C~~G~~G~~Ce-C~~~~~~~~-~----~~~C~~~~~~~~~Csg~------G~C~--cG~C 519 (741)
|.++|+|.- ++| .|.+||.|..|| |..+..... . ...|.. -.|+++ |.|. .|+|
T Consensus 3 C~~~g~C~~~~~~g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~~~~~~~C~~-----C~C~~~~~~~~~~~C~~~tG~C 77 (162)
T 1klo_A 3 CPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRP-----CQCNDNIDPNAVGNCNRLTGEC 77 (162)
T ss_dssp SCTTCCEEECSSSCCEEECSCCTTEESTTSCEECTTEEEETTCTTSSCEEEEE-----CCSTTCBCTTCSCCBCTTTCCB
T ss_pred CcCcCcccccCCCCCEEeCCCCCCCcCCCCcCCCCCCcCCcccccCCCCCCee-----CcCCCCCCcccCCcccCCCCcc
Confidence 455666642 478 799999999998 654432211 0 122321 135554 5674 6899
Q ss_pred c-cCCCCCceecCccccceeecCCCCCceeeecCceEecCCceec-cc---cccCCCCccccCccccCCcc------ccc
Q psy12966 520 S-LDNIVNVIISHVIVTTECCVLDLNTVGACVASAIVKTAGLVQR-VT---VAPLMTPVYLLREERCARAR------ESV 588 (741)
Q Consensus 520 ~-C~~~~~~~~G~~~~~CecC~~~~gG~G~C~cg~C~C~~G~~G~-~~---~~~C~~~~~~~~~~~Csg~G------~C~ 588 (741)
. |.. +|.|.+ || +|.+||.|. +. ...|.. -.|+..| .|+
T Consensus 78 ~~C~~---g~~G~~---Ce-----------------~C~~Gy~g~~~~~~~~~~C~~-------C~C~~~Gs~~~~~~Cd 127 (162)
T 1klo_A 78 LKCIY---NTAGFY---CD-----------------RCKEGFFGNPLAPNPADKCKA-------CACNPYGTVQQQSSCN 127 (162)
T ss_dssp CCBCT---TEETTT---TC-----------------EECTTEEECTTCSSGGGSEEE-------CCCCTTTBGGGCCCCC
T ss_pred cCCCC---CCcCCC---cC-----------------cCchhhcCCccccCCCCCCee-------ccCCCCCccCCCCCCC
Confidence 5 954 689999 77 366777772 21 122311 1344443 676
Q ss_pred --cccccccccccccCCCCCccc--CCCCC
Q psy12966 589 --SAVCANVLKIAREDIPAGSAR--NARPV 614 (741)
Q Consensus 589 --cG~C~~~~~C~~~~~~gy~G~--e~Cp~ 614 (741)
.|+|. | .++|.|. +.|+.
T Consensus 128 ~~tG~C~----C----~~g~~G~~Cd~C~~ 149 (162)
T 1klo_A 128 PVTGQCQ----C----LPHVSGRDCGTCDP 149 (162)
T ss_dssp TTTCCCC----B----CTTEESTTCCEECT
T ss_pred CCCCEeE----C----CCCCcCCCCCCCCC
Confidence 58999 9 8899997 66754
No 56
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=97.32 E-value=0.00026 Score=65.97 Aligned_cols=83 Identities=12% Similarity=0.223 Sum_probs=61.3
Q ss_pred cccCCCceecCC----CCccCCCCCceecCcccccee----ecCCC-CCceeeec--C--ceEecCCceec-c--ccccC
Q psy12966 506 MECSGRGNCLCN----QKSLDNIVNVIISHVIVTTEC----CVLDL-NTVGACVA--S--AIVKTAGLVQR-V--TVAPL 569 (741)
Q Consensus 506 ~~Csg~G~C~cG----~C~C~~~~~~~~G~~~~~Cec----C~~~~-gG~G~C~c--g--~C~C~~G~~G~-~--~~~~C 569 (741)
..|.++|+|+.. +|.|.. +|+|.. |+. |.... ..+|+|.- + .|.|.+||+|. + ....|
T Consensus 13 ~~C~~~g~C~~~~g~~~C~C~~---Gy~G~~---C~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~C 86 (135)
T 2vj3_A 13 NPCEHAGKCINTLGSFECQCLQ---GYTGPR---CEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDEC 86 (135)
T ss_dssp CSSSTTCEEEECSSSEEEECCT---TEESTT---SCEECCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSCEECCTT
T ss_pred CCCCCCCEeECCCCCEEEECCC---CCcCCc---ccccCccCCCCCCCCCCEEeCCCCCceeeCCCCCcCCcceecCCcc
Confidence 469999999743 799964 799999 975 65322 25688974 2 79999999993 2 34556
Q ss_pred CCCccccCccccCCcccccc----ccccccccccccCCCCCccc
Q psy12966 570 MTPVYLLREERCARARESVS----AVCANVLKIAREDIPAGSAR 609 (741)
Q Consensus 570 ~~~~~~~~~~~Csg~G~C~c----G~C~~~~~C~~~~~~gy~G~ 609 (741)
.. ..|..+|+|+- .+|. | .+||+|.
T Consensus 87 ~~-------~~C~~~g~C~~~~g~~~C~----C----~~G~~G~ 115 (135)
T 2vj3_A 87 AS-------SPCLHNGRCLDKINEFQCE----C----PTGFTGH 115 (135)
T ss_dssp TT-------CCSTTTCEEEECSSCEEEE----C----CTTEESS
T ss_pred cC-------CCcCCCCEeECCCCCeEEE----C----CCCCcCC
Confidence 32 46888899973 4899 9 8999995
No 57
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=97.25 E-value=6e-05 Score=84.61 Aligned_cols=69 Identities=16% Similarity=0.255 Sum_probs=35.2
Q ss_pred eeeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceecC-CCCccCCCCCceecCcccccee--ecCCCCCcee
Q psy12966 472 CECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLC-NQKSLDNIVNVIISHVIVTTEC--CVLDLNTVGA 548 (741)
Q Consensus 472 C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~c-G~C~C~~~~~~~~G~~~~~Cec--C~~~~gG~G~ 548 (741)
+.|..+|.|..|+++ .|. ..|.+ |+|+. ++|.|.. +|+|.. |+. |...+..+|+
T Consensus 379 ~~C~~~~~g~~c~~~----------~C~------~~C~n-G~C~~~~~C~C~~---G~~G~~---C~~~~C~~~C~~~g~ 435 (463)
T 2wg3_C 379 EECRATVQPAQTLTS----------ECS------RLCRN-GYCTPTGKCCCSP---GWEGDF---CRTAKCEPACRHGGV 435 (463)
T ss_dssp GGGCCCCCCCCCCCC----------HHH------HHCCS-EEECTTSCEEECT---TEESTT---SCEECC---------
T ss_pred ccCCCCCcCCCCccc----------ccc------CCCCC-CccCCCCeECCCC---CcCCCc---CCcCcCCCCCCCCCE
Confidence 467778999998863 475 24885 99984 8999964 799999 986 8765557899
Q ss_pred eec-CceEecCCceec
Q psy12966 549 CVA-SAIVKTAGLVQR 563 (741)
Q Consensus 549 C~c-g~C~C~~G~~G~ 563 (741)
|+. ..|.|.+||+|.
T Consensus 436 C~~~~~C~C~~G~~G~ 451 (463)
T 2wg3_C 436 CVRPNKCLCKKGYLGP 451 (463)
T ss_dssp ----------------
T ss_pred ECCCCEEECCCCcccC
Confidence 985 799999999993
No 58
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=96.97 E-value=0.0061 Score=69.95 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=89.7
Q ss_pred cceeEEeecCCCChHH-------hHHHHHHHHHHHHHHHHhhcCceeEEeeEeeccc-ccCccccCcccccCCCCCCCCC
Q psy12966 122 PVDLYYLMDLSNSMRD-------DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKV-VMPYVSMVPKNLLEPCAGCAAP 193 (741)
Q Consensus 122 pvDly~LmDlS~SM~d-------dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~-~~P~~~~~p~~l~~Pc~~c~~~ 193 (741)
.-+|+|+||+|+||.. .|+.+|+.+..+++..-...++=++|+..|.... ..|.+.. .
T Consensus 7 ke~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d-------------~- 72 (565)
T 1jey_B 7 KAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGG-------------D- 72 (565)
T ss_dssp CEEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTT-------------T-
T ss_pred ceEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccc-------------c-
Confidence 4789999999999974 7888888888888765445678899999998653 2232210 0
Q ss_pred cceeee---ecCCccHHHHHHhccc-eeeccCCCCCcchHHHHHHHHhcccccccc--C-C-ccEEEEEecCCCCCcCCC
Q psy12966 194 YGYHNV---MSLSQDTSRFSAQVKG-ANVSGNLDGPEGGFDAIMQAIVCKEEIGWR--D-R-ARRLLVFSTDAEFHHAGD 265 (741)
Q Consensus 194 f~f~~~---l~lT~d~~~F~~~v~~-~~isgn~D~PE~~ldAl~qa~vC~~~igWR--~-~-a~rliv~~TDa~~H~agD 265 (741)
+|+|+ .+|+.......+.+.. +..+ + ..-+-.|||..|+. .+.=+ . + .+|.|||+||...+. ++
T Consensus 73 -~y~~i~vl~~l~~~~~~~l~~l~~~l~~~-~--~~t~i~~al~~A~~---~l~~~~~~~k~~~krIiLlTDg~~~~-~~ 144 (565)
T 1jey_B 73 -QYQNITVHRHLMLPDFDLLEDIESKIQPG-S--QQADFLDALIVSMD---VIQHETIGKKFEKRHIEIFTDLSSRF-SK 144 (565)
T ss_dssp -CSTTEEEEEEEECCCHHHHHHHHTTCCCC-S--SCCCHHHHHHHHHH---HHHHHSSSSCCSEEEEEEECCCCSCC-CC
T ss_pred -CCCceEEeecCCCCCHHHHHHHHhhccCC-C--ccccHHHHHHHHHH---HHHHHhhcccccccEEEEEeCCCCCC-CH
Confidence 13232 3455433344445555 4322 1 11224677766652 22111 1 1 468899999997654 11
Q ss_pred CCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEE
Q psy12966 266 GKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAV 316 (741)
Q Consensus 266 g~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifav 316 (741)
..+.++++.|+++||.+.|.+
T Consensus 145 ------------------------------~~~~~~a~~l~~~gI~i~~vi 165 (565)
T 1jey_B 145 ------------------------------SQLDIIIHSLKKCDISLQFFL 165 (565)
T ss_dssp ------------------------------TTHHHHHHHHHHTTEEEEEEE
T ss_pred ------------------------------HHHHHHHHHHHhcCcEEEEEe
Confidence 136789999999999987544
No 59
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=96.96 E-value=0.00094 Score=75.84 Aligned_cols=15 Identities=40% Similarity=0.970 Sum_probs=14.0
Q ss_pred ceeeeCCCccCCccc
Q psy12966 470 GLCECDQSHFGRRCE 484 (741)
Q Consensus 470 G~C~C~~G~~G~~Ce 484 (741)
|.|.|.+||.|..||
T Consensus 279 g~C~C~~G~~G~~Ce 293 (525)
T 4aqs_A 279 GHCMCRHNTKGLNCE 293 (525)
T ss_dssp CEECCCTTEESSSSC
T ss_pred ccccCcCCCcCCCCc
Confidence 579999999999998
No 60
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=96.88 E-value=0.00032 Score=78.69 Aligned_cols=55 Identities=24% Similarity=0.460 Sum_probs=22.5
Q ss_pred CCCCeEEeC-ceeeeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceecC-CCCccCCCCCceecCcccccee
Q psy12966 461 CSGFGTFKC-GLCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLC-NQKSLDNIVNVIISHVIVTTEC 538 (741)
Q Consensus 461 Csg~G~c~c-G~C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~c-G~C~C~~~~~~~~G~~~~~Cec 538 (741)
|. ||+|.. +.|.|.+||.|..|+- ..|. ..|+++|+|+. ++|.|.. +|+|.. ||.
T Consensus 399 C~-nG~C~~~~~C~C~~G~~G~~C~~----------~~C~------~~C~~~g~C~~~~~C~C~~---G~~G~~---C~~ 455 (463)
T 2wg3_C 399 CR-NGYCTPTGKCCCSPGWEGDFCRT----------AKCE------PACRHGGVCVRPNKCLCKK---GYLGPQ---CEQ 455 (463)
T ss_dssp CC-SEEECTTSCEEECTTEESTTSCE----------ECC-----------------------------------------
T ss_pred CC-CCccCCCCeECCCCCcCCCcCCc----------CcCC------CCCCCCCEECCCCEEECCC---CcccCC---CCC
Confidence 65 699986 8999999999999974 2475 36999999984 8999954 799999 874
No 61
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=96.74 E-value=0.00066 Score=66.43 Aligned_cols=85 Identities=18% Similarity=0.338 Sum_probs=62.6
Q ss_pred CCCCCeEEeCc---------eeeeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceec----C----CCCccC
Q psy12966 460 NCSGFGTFKCG---------LCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCL----C----NQKSLD 522 (741)
Q Consensus 460 ~Csg~G~c~cG---------~C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~----c----G~C~C~ 522 (741)
.|..+|+|.-. .|.|.+||.|..|+|.. ..|.. ..|.++|.|+ . .+|.|.
T Consensus 55 ~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~~~C~~--------d~C~~-----~~C~~~g~C~~~~~~~~g~~~C~C~ 121 (186)
T 1z1y_A 55 ACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVL--------DVCQY-----XNCGESGECIVEYLSEIQSAGCSCA 121 (186)
T ss_dssp EEETTEEEEECSSTTSSCSEEEEECTTEEEETTEEEE--------GGGTT-----CCCCTTEEEEEEEETTEEEEEEEEC
T ss_pred CCCCCCEeecCCCCcCCCCEECCCCCCCccCCCCCCC--------CcCcC-----CCCCCCCEEeeCCcCCCCCceEECC
Confidence 58778888632 59999999999888753 35752 3588889997 2 379996
Q ss_pred CCCCceec-----Ccccccee-----ecCCC-CCceeeec--C--ceEecCCceec
Q psy12966 523 NIVNVIIS-----HVIVTTEC-----CVLDL-NTVGACVA--S--AIVKTAGLVQR 563 (741)
Q Consensus 523 ~~~~~~~G-----~~~~~Cec-----C~~~~-gG~G~C~c--g--~C~C~~G~~G~ 563 (741)
. +|.| .. |+. |.... ..+|+|+- | .|.|.+||+|.
T Consensus 122 ~---Gy~g~~~~~~~---C~~~~~~~C~~~C~~~~~~C~n~~g~y~C~C~~G~~g~ 171 (186)
T 1z1y_A 122 I---GXVPNPEDEXX---CTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFD 171 (186)
T ss_dssp T---EEEEETTTTTE---EEEEECCCCCCCCCTTTEEEEEETTEEEEEECTTCEEE
T ss_pred C---CCcccCCCCCc---ceEcCCCcccccccccCcceecCCCCeeeECCCCCccC
Confidence 4 7888 66 873 65444 35788973 3 79999999993
No 62
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=96.59 E-value=0.0022 Score=50.93 Aligned_cols=33 Identities=30% Similarity=0.496 Sum_probs=28.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12966 681 PPHVYILGLVLGVIGAIVLIGLAFLCLWKILTS 713 (741)
Q Consensus 681 p~~~~~~~Ivlgvi~~ivliGl~lLliwK~~~~ 713 (741)
|.+.++|.|++++++|++|+.|+++++||+=..
T Consensus 4 ~~~vp~WiIi~svl~GLLLL~Lii~~LwK~GFF 36 (54)
T 2l8s_A 4 PGRVPLWVILLSAFAGLLLLMLLILALWKIGFF 36 (54)
T ss_dssp CCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccCchHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 455789999999999999999999999998543
No 63
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=96.49 E-value=0.00094 Score=75.87 Aligned_cols=60 Identities=20% Similarity=0.423 Sum_probs=31.7
Q ss_pred ceeeeCCCccCCccc-ccCCCCCCc--CcccCcc---CCCCccccCCCceec--CCCCccCCCCCceecCccccce
Q psy12966 470 GLCECDQSHFGRRCE-CDAESSQGI--TSTGCKA---DANSTMECSGRGNCL--CNQKSLDNIVNVIISHVIVTTE 537 (741)
Q Consensus 470 G~C~C~~G~~G~~Ce-C~~~~~~~~--~~~~C~~---~~~~~~~Csg~G~C~--cG~C~C~~~~~~~~G~~~~~Ce 537 (741)
+.|.|.++|.|..|+ |..+..+.. ....|.. .+. ..|.+.+.|. .|+|.|.. +|+|.. |+
T Consensus 407 ~~C~C~~g~~G~~C~~C~~Gy~G~~c~~~~~C~~C~C~~~--gtc~~~~~Cd~~tg~C~C~~---g~~G~~---Ce 474 (525)
T 4aqs_A 407 GQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPL--GTIPGGNPCDSETGYCYCKR---LVTGQR---CD 474 (525)
T ss_dssp SCCCBCTTEETTTTCEECTTEECCCTTSTTSSEECCCCTT--TBCCSSCCBCTTTCCBCBCT---TCCSTT---TC
T ss_pred CccCCCCCCCCCcccCCCCCCcCCCCCCCCCCccCCCCCC--ceecCCCcccCCCCEEECCC---CCcCCC---cc
Confidence 567777777777774 654432211 1122321 111 2344455553 46777753 577877 65
No 64
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=96.33 E-value=0.0041 Score=49.48 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=29.5
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12966 680 CPPHVYILGLVLGVIGAIVLIGLAFLCLWKILTS 713 (741)
Q Consensus 680 Cp~~~~~~~Ivlgvi~~ivliGl~lLliwK~~~~ 713 (741)
.+.+.++|.|++++++|++|+.|+++++||+=..
T Consensus 6 ~~~~vp~wiIi~svl~GLllL~li~~~LwK~GFF 39 (54)
T 2knc_A 6 EERAIPIWWVLVGVLGGLLLLTILVLAMWKVGFF 39 (54)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 4456789999999999999999999999998543
No 65
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=96.23 E-value=0.0051 Score=46.51 Aligned_cols=32 Identities=25% Similarity=0.571 Sum_probs=28.2
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12966 680 CPPHVYILGLVLGVIGAIVLIGLAFLCLWKIL 711 (741)
Q Consensus 680 Cp~~~~~~~Ivlgvi~~ivliGl~lLliwK~~ 711 (741)
.+.+.++|.|++++++|++|+.|+++++||+=
T Consensus 4 ~~~~vp~wiIi~s~l~GLllL~li~~~LwK~G 35 (42)
T 2k1a_A 4 EERAIPIWWVLVGVLGGLLLLTILVLAMWKVG 35 (42)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCCcchHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34567899999999999999999999999973
No 66
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=96.23 E-value=0.0077 Score=56.27 Aligned_cols=99 Identities=12% Similarity=0.199 Sum_probs=63.6
Q ss_pred CCCCCCeEEeC-ceeeeCCCccCC---------cccccCCCCCCcCcccCccCCCCccccCCCceecC--C--CCccCCC
Q psy12966 459 PNCSGFGTFKC-GLCECDQSHFGR---------RCECDAESSQGITSTGCKADANSTMECSGRGNCLC--N--QKSLDNI 524 (741)
Q Consensus 459 ~~Csg~G~c~c-G~C~C~~G~~G~---------~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~c--G--~C~C~~~ 524 (741)
..|..+|+|+- ..|.|.+||.|. .|+- ...|...+. ..|..+++|+. | +|.|..
T Consensus 7 ~~C~~~~~C~~~~~C~C~~G~~g~~~~~~~~~~~C~d---------ideC~~~~~--~~C~~~~~C~n~~g~y~C~C~~- 74 (143)
T 2bou_A 7 RWCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDD---------INECATLSK--VSCGKFSDCWNTEGSYDCVCSP- 74 (143)
T ss_dssp TTCCTTEEESSSSCEEECTTEECSSSSBCSTTCCCEE---------CCGGGC------CCCTTEEEEECSSCEEEEECT-
T ss_pred CcCCCCCEEcCCCEEeCCCCCcCccccccCCCCcCCc---------cccccCCCC--CCCCCCCEEEcCCCCeEeECCC-
Confidence 35888898875 589999999984 5531 134653221 36888899972 2 599964
Q ss_pred CCceecCc---------ccccee---ecCC---CCCceeeec--C--ceEecCCceeccccccCCC
Q psy12966 525 VNVIISHV---------IVTTEC---CVLD---LNTVGACVA--S--AIVKTAGLVQRVTVAPLMT 571 (741)
Q Consensus 525 ~~~~~G~~---------~~~Cec---C~~~---~gG~G~C~c--g--~C~C~~G~~G~~~~~~C~~ 571 (741)
+|.|.. ..+|+- |... ...+++|+- | .|.|.+||+|......|..
T Consensus 75 --Gy~g~~~~~~~~~~~~~~C~dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~C~~ 138 (143)
T 2bou_A 75 --GYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQK 138 (143)
T ss_dssp --TEEETTCCSCBSSGGGCCEEECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBCTTCCSSBT
T ss_pred --CcccCcCccccccCCCCCcCCccCccCcCCCCCCCCEEECCCCCEEeeCCCCcccCCCCccCcc
Confidence 688763 011554 6431 124578863 3 6999999999666666743
No 67
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=96.14 E-value=0.18 Score=60.22 Aligned_cols=239 Identities=13% Similarity=0.163 Sum_probs=121.4
Q ss_pred CcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcC---ceeEEeeEeecccccCccccCcccc------cCCC----
Q psy12966 121 YPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTS---NFRLGFGSFVDKVVMPYVSMVPKNL------LEPC---- 187 (741)
Q Consensus 121 ~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~---~~r~GfgsFvDk~~~P~~~~~p~~l------~~Pc---- 187 (741)
.|.=.+||+|+|.++- +..-|+.+...|.+.|..+.. +.++||.+|- +.+.=| +..+..- +.|=
T Consensus 186 ~pp~yvFvIDvs~~av-~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd-~~V~~~-~l~~~~~g~k~~~~q~~mlvv 262 (810)
T 1pcx_A 186 PPATYCFLIDVSQSSI-KSGLLATTINTLLQNLDSIPNHDERTRISILCVD-NAIHYF-KIPLDSENNEESADQINMMDI 262 (810)
T ss_dssp CCCEEEEEEECSHHHH-HHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEES-SSEEEE-ECCCGGGC-------CEEECC
T ss_pred CCcEEEEEEECChHHH-hhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-CEEEEE-ecCccccCccccccchhhccc
Confidence 3677899999998762 222355566677777777765 7999999994 444322 1111000 0000
Q ss_pred CCCCCCc---ceeeeecCCccHHHHHHhcccee-eccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcC
Q psy12966 188 AGCAAPY---GYHNVMSLSQDTSRFSAQVKGAN-VSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHA 263 (741)
Q Consensus 188 ~~c~~~f---~f~~~l~lT~d~~~F~~~v~~~~-isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~a 263 (741)
..-+.+| .-+-.+++.+......+.++.+. ...+.-.|+..+-+.++||+ .-++ . -.-||++|.+-.+- .
T Consensus 263 ~dl~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~--~lL~-~-~GGrI~~F~sg~pt--~ 336 (810)
T 1pcx_A 263 ADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAY--HLIG-G-VGGKIIVVSGTLPN--L 336 (810)
T ss_dssp CCTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHH--HHHT-T-TCEEEEEEESSCCC--S
T ss_pred cccccccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHH--HHHH-h-cCCEEEEEecCCCC--C
Confidence 0001111 11123566665555555555533 33444677777777777775 2333 1 22578887776663 3
Q ss_pred CCCCccceecCCCCcccccCCC----CccccccCCCCCHHHHHHHHHhcCccE-EEEEecchhhhH--HHHhhcccCcee
Q psy12966 264 GDGKLGGIVKPNDGLCHMDRNG----MYTHSTVQDYPSISQINMKVKQNSINL-IFAVTAEQIGVY--ERLKTHIEGSSS 336 (741)
Q Consensus 264 gDg~L~Gi~~pnDg~Chl~~~~----~Y~~s~~~DYPSv~ql~~~l~e~~I~~-Ifavt~~~~~~Y--~~l~~~i~gs~v 336 (741)
|.|+|..- .+. =|.+.+. .|..+. + -..+|+..+.+++|.+ ||+......+++ ..|+++-+|...
T Consensus 337 GpG~l~~r---~~~-~~~~~~ke~~~l~~~a~--~--fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~ 408 (810)
T 1pcx_A 337 GIGKLQRR---NES-GVVNTSKETAQLLSCQD--S--FYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTH 408 (810)
T ss_dssp STTCCCC------------------------C--C--HHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEE
T ss_pred CCCccccc---ccc-cccCcccchhhhcccch--H--HHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEE
Confidence 66665433 222 2554322 122222 2 2578899999999876 577777666554 344544455432
Q ss_pred eeccCCcc---hHHHHHHHHhhh----ccceEEeeeCCCCceEEEEE
Q psy12966 337 GTLTNDSS---NVVDLVKDQYNK----ISSSVEMKDTSSSAVKVTYH 376 (741)
Q Consensus 337 g~L~~dSs---Niv~lI~~aY~~----i~s~v~l~~~~~~~~~v~~~ 376 (741)
--=+-+.+ ...++.++-+.. +.-..+|+.....+++|+-.
T Consensus 409 ~y~~F~~~~~~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~ 455 (810)
T 1pcx_A 409 FYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRF 455 (810)
T ss_dssp EEETCCTTSHHHHHHHHHHHHHHHHCCCCEEEEEEEEECTTEEEEEE
T ss_pred EcCCCcchhhHHHHHHHHHHHHHhhhhcceeEEEEEEcCCCeEEEEe
Confidence 21111122 122344444433 34456666666778888633
No 68
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=96.13 E-value=0.0038 Score=58.03 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=58.6
Q ss_pred cccCCCceecC------CCCccCCCCCceecCcccccee----------------ecCC-CCCceeee-----------c
Q psy12966 506 MECSGRGNCLC------NQKSLDNIVNVIISHVIVTTEC----------------CVLD-LNTVGACV-----------A 551 (741)
Q Consensus 506 ~~Csg~G~C~c------G~C~C~~~~~~~~G~~~~~Cec----------------C~~~-~gG~G~C~-----------c 551 (741)
..|.++|+|+. ..|.|+. +|+|.. |+. |... ...+|+|+ -
T Consensus 6 ~pC~~~g~C~~~~~~g~~~C~C~~---G~~G~~---C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~ 79 (143)
T 4d90_A 6 NPCENGGICLPGLADGSFSCECPD---GFTDPN---CSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIG 79 (143)
T ss_dssp CCCGGGCEEEC-----CCEEECCT---TCCTTT---TCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEETTEECC
T ss_pred CcCCCCCEeeCCCCCCCEEeECCC---CCCCCC---CccCccccccccccccCCcCCCCCCCCCCEecCCCccccCCCCC
Confidence 45888899974 2599964 789999 874 2111 11468897 1
Q ss_pred CceEecCCceec-c--ccccCCCCccccCccccCCcccccc--c--cccccccccccCCCCCccc
Q psy12966 552 SAIVKTAGLVQR-V--TVAPLMTPVYLLREERCARARESVS--A--VCANVLKIAREDIPAGSAR 609 (741)
Q Consensus 552 g~C~C~~G~~G~-~--~~~~C~~~~~~~~~~~Csg~G~C~c--G--~C~~~~~C~~~~~~gy~G~ 609 (741)
..|.|.+||+|. + ....|.. ..|..+|+|+- | +|. | .+||+|+
T Consensus 80 ~~C~C~~G~~G~~C~~~i~~C~~-------~~C~~~~~C~~~~g~~~C~----C----~~G~~G~ 129 (143)
T 4d90_A 80 YVCKCPRGFNGIHCQHNINECEV-------EPCKNGGICTDLVANYSCE----C----PGEFMGR 129 (143)
T ss_dssp EEEECCTTEESTTSCEECCTTTT-------CCSCTTCEEEEETTEEEEE----C----CTTCBST
T ss_pred eEeECcCCCcCCCcccCCCcCCC-------CCCCCCCEeECCCCCeEeE----C----CCCCccC
Confidence 279999999993 3 3456731 35888899974 2 699 9 8999996
No 69
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=96.06 E-value=0.015 Score=67.54 Aligned_cols=84 Identities=17% Similarity=0.309 Sum_probs=57.4
Q ss_pred CCCCeEEeC---c--ee-eeCCCccC--CcccccCCCCCCcCcccCccCCCCccccCCCc---eecC----CCCc-cCCC
Q psy12966 461 CSGFGTFKC---G--LC-ECDQSHFG--RRCECDAESSQGITSTGCKADANSTMECSGRG---NCLC----NQKS-LDNI 524 (741)
Q Consensus 461 Csg~G~c~c---G--~C-~C~~G~~G--~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G---~C~c----G~C~-C~~~ 524 (741)
|..+|+|.- | .| .|.+||.| ..|+- . ..|...+ ..|..++ +|+. -+|. |+.
T Consensus 11 C~~gg~C~n~~~Gsy~C~~C~~GytGdg~~CeD-i--------DEC~~~p---~~C~~gg~~~~CvNt~gsY~C~~C~~- 77 (634)
T 1yo8_A 11 CFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCED-L--------DECALVP---DICFSTSKVPRCVNTQPGFHCLPCPP- 77 (634)
T ss_dssp SCTTCCEEECTTSCEEECCCCTTBCSCSSSCCB-C--------CTTTTSC---CCSCCCSSSCCEEECSSSEEECCCCT-
T ss_pred CCCCCEEecCCCCCeECCcCCCccCCCCCCccc-c--------ccccCCC---CcccCCccccceeeccCceecccCCC-
Confidence 666677752 3 69 99999999 77862 1 3475321 3588877 8862 3698 964
Q ss_pred CCceecCccccce-------------e-----ecCC---CCCceeeec------C--ceEecCCcee
Q psy12966 525 VNVIISHVIVTTE-------------C-----CVLD---LNTVGACVA------S--AIVKTAGLVQ 562 (741)
Q Consensus 525 ~~~~~G~~~~~Ce-------------c-----C~~~---~gG~G~C~c------g--~C~C~~G~~G 562 (741)
+|.|.. |+ | |... +..+++|.- + .|.|.+||+|
T Consensus 78 --Gy~G~~---c~g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~G 139 (634)
T 1yo8_A 78 --RYRGNQ---PVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAG 139 (634)
T ss_dssp --TEEECC---CEESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEE
T ss_pred --CcccCc---cccccccccccCCCcccccccccCCCcccccCccccccccccccceeeeccCCccc
Confidence 799988 76 3 6532 224688963 2 6999999999
No 70
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=95.63 E-value=0.0082 Score=45.84 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=26.0
Q ss_pred CCCCC-CchhhHHHHHHHHHHHHHHHHHHHH
Q psy12966 679 ECPPH-VYILGLVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 679 ~Cp~~-~~~~~Ivlgvi~~ivliGl~lLliw 708 (741)
.||.. ++..+|++||++|++++.++++++|
T Consensus 2 gCp~~~s~~~~IA~gVVgGv~~~~ii~~~~~ 32 (44)
T 2ks1_B 2 GCPTNGPKIPSIATGMVGALLLLLVVALGIG 32 (44)
T ss_dssp CCCCCCSCSSSSTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcceEEeehhHHHHHHHHHHHHHH
Confidence 68765 7899999999999999888888877
No 71
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*
Probab=95.51 E-value=0.0035 Score=73.25 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=49.6
Q ss_pred ceeeeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceecCCCCccCCCCCceecCcccccee--ecCCCCCce
Q psy12966 470 GLCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLCNQKSLDNIVNVIISHVIVTTEC--CVLDLNTVG 547 (741)
Q Consensus 470 G~C~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~cG~C~C~~~~~~~~G~~~~~Cec--C~~~~gG~G 547 (741)
....|++||.|++|... ..|+ ..|+|||.|+-|+|+|+. +|.|.. |+. ||-...=.+
T Consensus 518 ~~~~C~~gw~g~dc~i~---------~~Cp------~~C~ghG~C~~G~C~Cd~---G~~G~~---C~~~~~~~~~~~~~ 576 (725)
T 2e26_A 518 APFDKQQTWAIDNVYIG---------DGCL------DMCSGHGRCVQGSCVCDE---QWGGLY---CDEPETSLPTQLKD 576 (725)
T ss_dssp SSCCTTCCEEEEEEEEE---------SCSS------GGGGGSEEEETTEEEECT---TEESTT---SCEESSCCCSCEEE
T ss_pred cCCccCCCccccccccc---------CCCC------cccCCCcEECCCCEeeCC---CccCCC---cCccCCCCchhhhc
Confidence 34578999999999853 3586 469999999999999964 799999 986 433222124
Q ss_pred eeecCceEecCCcee
Q psy12966 548 ACVASAIVKTAGLVQ 562 (741)
Q Consensus 548 ~C~cg~C~C~~G~~G 562 (741)
+.+.+. . .++|++
T Consensus 577 ~Fet~~-~-~~~W~~ 589 (725)
T 2e26_A 577 NFNRAP-S-NQNWLT 589 (725)
T ss_dssp CCSSCC-C-TTTEEE
T ss_pred cccCCc-c-CCCcee
Confidence 444444 3 667776
No 72
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=95.33 E-value=0.089 Score=60.91 Aligned_cols=49 Identities=16% Similarity=0.021 Sum_probs=39.0
Q ss_pred ceeEEeecCCCChHH--------hHHHHHHHHHHHHHHHHhhcCceeEEeeEeeccc
Q psy12966 123 VDLYYLMDLSNSMRD--------DKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKV 171 (741)
Q Consensus 123 vDly~LmDlS~SM~d--------dl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~ 171 (741)
=+++|++|+|.||.. .|+..++.+.+|++..--...+=++|+..|....
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~ 92 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEK 92 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSS
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCC
Confidence 359999999999975 6889999888888654333466799999998764
No 73
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=95.14 E-value=0.27 Score=59.52 Aligned_cols=234 Identities=14% Similarity=0.210 Sum_probs=126.5
Q ss_pred cceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcC---ceeEEeeEeecccccCccccCc------------c-----
Q psy12966 122 PVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTS---NFRLGFGSFVDKVVMPYVSMVP------------K----- 181 (741)
Q Consensus 122 pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~---~~r~GfgsFvDk~~~P~~~~~p------------~----- 181 (741)
|.=.+||+|+|.+.- +..-|+.+...|.+.|..+.. +.++||.+| |+.+.=| +..+ +
T Consensus 303 ppvyvFvIDvS~~av-~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITF-ds~Vh~y-~l~~~~~g~k~~~~q~qmlvvs 379 (926)
T 1m2v_B 303 PATYCFLIDVSQSSI-KSGLLATTINTLLQNLDSIPNHDERTRISILCV-DNAIHYF-KIPLDSENNEESADQINMMDIA 379 (926)
T ss_dssp CCBEEEEEECSHHHH-HSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEE-SSSEEEE-ECCCC---------CCEEEEEC
T ss_pred CcEEEEEEECCHHHH-hhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-CCEEEEE-ecCCcccCCcccccchhhcccc
Confidence 567899999997642 122255566677777777755 799999999 4444322 2111 1
Q ss_pred cccCCCCCCCCCcceeeeecCCccHHHHHHhcccee-eccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCC
Q psy12966 182 NLLEPCAGCAAPYGYHNVMSLSQDTSRFSAQVKGAN-VSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEF 260 (741)
Q Consensus 182 ~l~~Pc~~c~~~f~f~~~l~lT~d~~~F~~~v~~~~-isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~ 260 (741)
++.+|- -|..-+-.+++.+....+.+.++.+. ...+.-.|+..+-+.++||+ .-++ ...-||++|.+-.+-
T Consensus 380 dl~d~f----~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~--~lL~--~~GGrI~~F~sg~Pt 451 (926)
T 1m2v_B 380 DLEEPF----LPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAY--HLIG--GVGGKIIVVSGTLPN 451 (926)
T ss_dssp CCSSCC----CSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHH--HHHT--TTCEEEEEEESSCCC
T ss_pred cccccc----CCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHH--HHHH--hhCCEEEEEecCCCC
Confidence 011110 01112224667776666656665543 33444677887777777775 2333 123588888877763
Q ss_pred CcCCCCCccceecCCCCcccccCCC----CccccccCCCCCHHHHHHHHHhcCccE-EEEEecchhhhH--HHHhhcccC
Q psy12966 261 HHAGDGKLGGIVKPNDGLCHMDRNG----MYTHSTVQDYPSISQINMKVKQNSINL-IFAVTAEQIGVY--ERLKTHIEG 333 (741)
Q Consensus 261 H~agDg~L~Gi~~pnDg~Chl~~~~----~Y~~s~~~DYPSv~ql~~~l~e~~I~~-Ifavt~~~~~~Y--~~l~~~i~g 333 (741)
. |.|+|..- .+ .=|.+.+. .|..+. +| ..+|+..+.+++|.+ ||+......+++ ..|+++-+|
T Consensus 452 ~--GpG~l~~r---e~-~~~~~~~ke~~~ll~~a~--~F--Yk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG 521 (926)
T 1m2v_B 452 L--GIGKLQRR---NE-SGVVNTSKETAQLLSCQD--SF--YKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAG 521 (926)
T ss_dssp S--STTCCCCC---CC-----CCTTHHHHHTSCSS--TH--HHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTC
T ss_pred C--CCCccccc---cc-ccccCcccchhhhccchH--HH--HHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCc
Confidence 3 66665432 22 23654332 122222 22 578899999999876 688777766554 244444445
Q ss_pred ceeeeccCCcc---hHHHHHHHHhhh----ccceEEeeeCCCCceEEEEE
Q psy12966 334 SSSGTLTNDSS---NVVDLVKDQYNK----ISSSVEMKDTSSSAVKVTYH 376 (741)
Q Consensus 334 s~vg~L~~dSs---Niv~lI~~aY~~----i~s~v~l~~~~~~~~~v~~~ 376 (741)
...--=+-+++ ...++.++-+.. +.-..+|+.....+|+|+-.
T Consensus 522 ~v~~y~~F~~~~~~d~~kf~~dl~~~Lt~~~gf~a~mrVR~S~glkv~~~ 571 (926)
T 1m2v_B 522 QTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRF 571 (926)
T ss_dssp CEEEEESCCTTSHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEE
T ss_pred eEEEcCCCcchhhhHHHHHHHHHHHHhhhhhceeEEEEEEeCCCcEEEEe
Confidence 43221111122 123344444433 33455666656778888633
No 74
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=95.02 E-value=0.025 Score=52.68 Aligned_cols=93 Identities=13% Similarity=0.165 Sum_probs=58.4
Q ss_pred cccCCCceec-CCCCccCCCCCceecCc------ccccee---ecCC----CCCceeeec--C--ceEecCCceeccc--
Q psy12966 506 MECSGRGNCL-CNQKSLDNIVNVIISHV------IVTTEC---CVLD----LNTVGACVA--S--AIVKTAGLVQRVT-- 565 (741)
Q Consensus 506 ~~Csg~G~C~-cG~C~C~~~~~~~~G~~------~~~Cec---C~~~----~gG~G~C~c--g--~C~C~~G~~G~~~-- 565 (741)
..|..+|+|+ -.+|.|.. +|+|.. ..+|+- |... ...+++|+- + .|.|.+||+|...
T Consensus 7 ~~C~~~~~C~~~~~C~C~~---G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~ 83 (143)
T 2bou_A 7 RWCPQDSSCVNATACRCNP---GFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAK 83 (143)
T ss_dssp TTCCTTEEESSSSCEEECT---TEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCCS
T ss_pred CcCCCCCEEcCCCEEeCCC---CCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCcc
Confidence 4688889997 46899964 688731 112875 7653 224689974 2 7999999999421
Q ss_pred ------cccCCCCcc-ccCccccCCcccccc--c--cccccccccccCCCCCccc
Q psy12966 566 ------VAPLMTPVY-LLREERCARARESVS--A--VCANVLKIAREDIPAGSAR 609 (741)
Q Consensus 566 ------~~~C~~~~~-~~~~~~Csg~G~C~c--G--~C~~~~~C~~~~~~gy~G~ 609 (741)
...|...+. ..+...|..+++|+. | +|. | .+||.|.
T Consensus 84 ~~~~~~~~~C~dideC~~~~~~C~~~~~C~n~~g~y~C~----C----~~Gy~g~ 130 (143)
T 2bou_A 84 TFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCR----C----RPGWKPR 130 (143)
T ss_dssp CBSSGGGCCEEECCHHHHTCCCCCTTSEEEECSSCEEEE----C----CSSSCBC
T ss_pred ccccCCCCCcCCccCccCcCCCCCCCCEEECCCCCEEee----C----CCCcccC
Confidence 224432110 001135777788863 2 688 9 8899997
No 75
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=94.86 E-value=0.023 Score=62.57 Aligned_cols=21 Identities=24% Similarity=0.656 Sum_probs=16.5
Q ss_pred CceeeeCCCccCCccc-ccCCC
Q psy12966 469 CGLCECDQSHFGRRCE-CDAES 489 (741)
Q Consensus 469 cG~C~C~~G~~G~~Ce-C~~~~ 489 (741)
.|+|.|..++.|..|| |..+.
T Consensus 285 ~g~C~C~hnT~G~~CErC~pGy 306 (403)
T 2y38_A 285 RLQCACQHNTCGGSCDRCCPGF 306 (403)
T ss_dssp CEEECCCTTEESSSCCEECTTC
T ss_pred ceEeECcCcCcCCCCCCCCccc
Confidence 4678999999999998 65444
No 76
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Probab=94.69 E-value=0.071 Score=52.75 Aligned_cols=72 Identities=26% Similarity=0.494 Sum_probs=47.0
Q ss_pred CCCCcccCcEEEEEEEEEeccCCCCCcccceEEEEEecccceeEEEecccCCCccCCCCCCCCCCCCCCCCCCCeEEe-C
Q psy12966 391 KCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFK-C 469 (741)
Q Consensus 391 ~C~~v~~g~~V~F~v~v~~~~Cp~~~~~~~~~~~I~~~g~~e~l~v~l~~~C~C~Ce~~~~~~~~~~s~~Csg~G~c~-c 469 (741)
.|+|-..| ++.|+|.|....... ..+...|+.|... .+-...+| . +.|.+.|.|. .
T Consensus 108 ~CsG~~sG-~~~v~v~l~~~~~~~------~~~n~T~L~~k~~-K~C~~~~C----~-----------~~C~ngG~Cv~P 164 (188)
T 2ygo_A 108 PCLGXQDG-VAAFEVDVIVMNSEG------NTILXTPQNAIFF-KTCQQAEC----P-----------GGCRNGGFCNER 164 (188)
T ss_dssp CBCSSCCE-EEEEEEEEEEECTTS------CEEEECCTTCCEE-EEECCCCC----T-----------TCCCTTCEECTT
T ss_pred EecCCcCc-eEEEEEEEEEecccC------ccCcCcceeEeec-ccccCCcc----C-----------CCCCCCCEeCCC
Confidence 58775554 578888883332221 1455667777532 22233332 2 3588889997 6
Q ss_pred ceeeeCCCccCCcccc
Q psy12966 470 GLCECDQSHFGRRCEC 485 (741)
Q Consensus 470 G~C~C~~G~~G~~CeC 485 (741)
++|.|.+||.|..|+-
T Consensus 165 ~~C~C~~Gw~G~~C~~ 180 (188)
T 2ygo_A 165 RICECPDGFHGPHCEG 180 (188)
T ss_dssp SCEECCTTCBTTTTCB
T ss_pred CcccCcCCCCCCCCcC
Confidence 9999999999999985
No 77
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*
Probab=94.61 E-value=0.012 Score=68.75 Aligned_cols=46 Identities=11% Similarity=-0.009 Sum_probs=38.5
Q ss_pred CccCCCCCceecCcccccee---ecCCCCCceeeecCceEecCCcee-ccccccCC
Q psy12966 519 KSLDNIVNVIISHVIVTTEC---CVLDLNTVGACVASAIVKTAGLVQ-RVTVAPLM 570 (741)
Q Consensus 519 C~C~~~~~~~~G~~~~~Cec---C~~~~gG~G~C~cg~C~C~~G~~G-~~~~~~C~ 570 (741)
..|.. +|.|++ |.. ||..++|||+|+-|+|+|++||+| .|....|.
T Consensus 520 ~~C~~---gw~g~d---c~i~~~Cp~~C~ghG~C~~G~C~Cd~G~~G~~C~~~~~~ 569 (725)
T 2e26_A 520 FDKQQ---TWAIDN---VYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPETS 569 (725)
T ss_dssp CCTTC---CEEEEE---EEEESCSSGGGGGSEEEETTEEEECTTEESTTSCEESSC
T ss_pred CccCC---Cccccc---ccccCCCCcccCCCcEECCCCEeeCCCccCCCcCccCCC
Confidence 45633 799999 995 999888999999999999999999 66666664
No 78
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=94.55 E-value=0.91 Score=53.94 Aligned_cols=236 Identities=15% Similarity=0.194 Sum_probs=122.5
Q ss_pred CCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCcce---
Q psy12966 120 DYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGY--- 196 (741)
Q Consensus 120 ~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f--- 196 (741)
..|.=.+||+|+|.+.. .|+.+...|...|..+..+.++||.+|-.. +. |.+..+. .|...|.|
T Consensus 119 ~~pp~~vFvIDvs~~~~----~l~~l~~sl~~~L~~Lp~~~~VGlITf~~~-V~-~y~l~~~-------~~~~~~V~~g~ 185 (768)
T 1m2o_A 119 TVPPIFFFVVDLTSETE----NLDSLKESIITSLSLLPPNALIGLITYGNV-VQ-LHDLSSE-------TIDRCNVFRGD 185 (768)
T ss_dssp CSCCEEEEEEECCSCHH----HHHHHHHHHHHHHHTSCTTCEEEEEEESSE-EE-ECCCSSS-------SSEEEEEEETT
T ss_pred CCCCEEEEEEECCcCHH----HHHHHHHHHHHHHHhCCCCCEEEEEEECCE-EE-EEECCCC-------CCcceeeecCC
Confidence 44677889999999975 256666788888888999999999999643 22 2111110 00001111
Q ss_pred ----------------------------------------eeeecCCccHHHHHHhccceee----ccCCCCCcchHHHH
Q psy12966 197 ----------------------------------------HNVMSLSQDTSRFSAQVKGANV----SGNLDGPEGGFDAI 232 (741)
Q Consensus 197 ----------------------------------------~~~l~lT~d~~~F~~~v~~~~i----sgn~D~PE~~ldAl 232 (741)
+-.+++.+......+.++.+.- -.+.-.|+..+-+.
T Consensus 186 k~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~A 265 (768)
T 1m2o_A 186 REYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSA 265 (768)
T ss_dssp SCCCHHHHHHHHHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHH
T ss_pred ccccHHHHHHHHhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHH
Confidence 0112333322233334444321 12234566556666
Q ss_pred HHHHhcccccc--ccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccC--C--CCccccccCCCCCHHHHHHHHH
Q psy12966 233 MQAIVCKEEIG--WRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDR--N--GMYTHSTVQDYPSISQINMKVK 306 (741)
Q Consensus 233 ~qa~vC~~~ig--WR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~--~--~~Y~~s~~~DYPSv~ql~~~l~ 306 (741)
++||+ .-++ .....-||++|.+=.+ ..|-|+|..--.++...-|.|. + -.+..+.. | ..+|+..+.
T Consensus 266 l~~A~--~ll~~~~~~~GGrI~~F~sg~p--t~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~--f--Y~~la~~~~ 337 (768)
T 1m2o_A 266 LNIAS--LLLQGCYKNIPARIILFASGPG--TVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACK--F--YNQIAQRVA 337 (768)
T ss_dssp HHHHH--HHHHHHCTTSCCEEEEEESSCC--CSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHH--H--HHHHHHHHH
T ss_pred HHHHH--HHHhhccCCCCcEEEEEeCCCC--CCCCccccccccccccccccccccchhhhcCchHH--H--HHHHHHHHH
Confidence 66664 2222 1123467888777655 3466776554333333344321 1 12222221 1 467888888
Q ss_pred hcCccE-EEEEecchhhhH--HHHhhcccCceeeeccCCcchHHHHHHHHhhh-------ccceEEeeeCCCCceEEEEE
Q psy12966 307 QNSINL-IFAVTAEQIGVY--ERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNK-------ISSSVEMKDTSSSAVKVTYH 376 (741)
Q Consensus 307 e~~I~~-Ifavt~~~~~~Y--~~l~~~i~gs~vg~L~~dSsNiv~lI~~aY~~-------i~s~v~l~~~~~~~~~v~~~ 376 (741)
+++|.+ ||+......+++ ..|+.+-+|...--=+-+.+.+.+-+...+.+ +.-..+|+.....+++|+-.
T Consensus 338 ~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~~l~r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~ 417 (768)
T 1m2o_A 338 ANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGL 417 (768)
T ss_dssp HHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHHHTTCBCTTSSBSCEEEEEEEEEECTTEEEEEE
T ss_pred HCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHHHHHHHHHHhhccccccceEEEEEEEEEecCCceEEEe
Confidence 888876 677777666554 34444444543321122233344434443332 33345566555777777643
No 79
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=94.48 E-value=1.6 Score=51.67 Aligned_cols=195 Identities=14% Similarity=0.232 Sum_probs=110.6
Q ss_pred cceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCce--eEEeeEeecccccCccccCc----------ccccCCCCC
Q psy12966 122 PVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNF--RLGFGSFVDKVVMPYVSMVP----------KNLLEPCAG 189 (741)
Q Consensus 122 pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~--r~GfgsFvDk~~~P~~~~~p----------~~l~~Pc~~ 189 (741)
|.=.+||+|+|.. ..+..-|+.+...|.+.|..+..+. ++||.+|-...- |.+..+ .++++|=
T Consensus 160 pp~yvFvIDvs~~-a~~~g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~~vh--~y~l~~~~~~~qmlvv~dl~d~f-- 234 (751)
T 3eh1_A 160 PAVYLFVLDVSHN-AVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIH--FYNLQEGLSQPQMLIVSDIDDVF-- 234 (751)
T ss_dssp CCEEEEEEECSHH-HHHHTHHHHHHHHHHHHTTTSSCCTTCEEEEEEESSSEE--EEECCTTCSSCEEEEESCTTCTT--
T ss_pred CcEEEEEEEccHh-hhhhhHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCCEEE--EEECCCCcccceeeccccccccC--
Confidence 6778999999863 2233347777778888888887655 999999876421 222211 1122211
Q ss_pred CCCCcceeeeecCCccHHHHHHhcccee-eccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCc
Q psy12966 190 CAAPYGYHNVMSLSQDTSRFSAQVKGAN-VSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKL 268 (741)
Q Consensus 190 c~~~f~f~~~l~lT~d~~~F~~~v~~~~-isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L 268 (741)
. |..-+-.+++.+........++.+. ...+.-.|+..+-+.++||+ .-++ ...-||++|.+=.+- .|-|+|
T Consensus 235 -~-P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~--~ll~--~~GGrI~~F~sg~pt--~GpG~l 306 (751)
T 3eh1_A 235 -L-PTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAF--KLMS--PTGGRVSVFQTQLPS--LGAGLL 306 (751)
T ss_dssp -S-CCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHH--HHHT--TTCEEEEEEECSCCC--SSTTCC
T ss_pred -C-CChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHH--HHhh--cCCCEEEEEecCCCC--CCCCcc
Confidence 0 1111224577776666655555542 23445678888888888876 3443 234689998876664 467777
Q ss_pred cceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccE-EEEEecchhhhHH--HHhhcccCc
Q psy12966 269 GGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINL-IFAVTAEQIGVYE--RLKTHIEGS 334 (741)
Q Consensus 269 ~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~-Ifavt~~~~~~Y~--~l~~~i~gs 334 (741)
..--.|+ ..=|-++...+..++ + -..+|+..+.+++|.+ ||+......++.+ .|+++-+|.
T Consensus 307 ~~r~~~~-~~~~~ke~~~~~~a~--~--fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~ 370 (751)
T 3eh1_A 307 QSREDPN-QRSSTKVVQHLGPAT--D--FYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGC 370 (751)
T ss_dssp CCCCCSC-GGGGSSSCTTCSCSC--S--HHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCC
T ss_pred ccccccc-cCCCchhhhhhcchH--H--HHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCce
Confidence 5432222 011211111222222 1 2578999999999866 5777766665543 334444444
No 80
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=94.12 E-value=0.037 Score=53.25 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=16.6
Q ss_pred Cceee-eCCCccCCccc-ccCCC
Q psy12966 469 CGLCE-CDQSHFGRRCE-CDAES 489 (741)
Q Consensus 469 cG~C~-C~~G~~G~~Ce-C~~~~ 489 (741)
-|+|. |.++|.|..|+ |..+.
T Consensus 74 tG~C~~C~~g~~G~~Ce~C~~Gy 96 (162)
T 1klo_A 74 TGECLKCIYNTAGFYCDRCKEGF 96 (162)
T ss_dssp TCCBCCBCTTEETTTTCEECTTE
T ss_pred CCcccCCCCCCcCCCcCcCchhh
Confidence 47894 99999999997 76543
No 81
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=94.00 E-value=0.032 Score=61.78 Aligned_cols=94 Identities=19% Similarity=0.279 Sum_probs=20.6
Q ss_pred ceeeeCCCccCCccc-ccCCCCCCcCcccCccCCCCccccCC-CceecCCCCccCCCCCceecCcccccee----ecCCC
Q psy12966 470 GLCECDQSHFGRRCE-CDAESSQGITSTGCKADANSTMECSG-RGNCLCNQKSLDNIVNVIISHVIVTTEC----CVLDL 543 (741)
Q Consensus 470 G~C~C~~G~~G~~Ce-C~~~~~~~~~~~~C~~~~~~~~~Csg-~G~C~cG~C~C~~~~~~~~G~~~~~Cec----C~~~~ 543 (741)
+.|.|..|+.|..|| |...... ..+.. + +..+.. .....|-.|.|. +.|.. |+- |.
T Consensus 313 ~~C~C~~~ttG~~CE~C~pgy~~----~P~~~--g-t~~p~~~g~~~~C~pC~Cn-----~~g~~---CD~~t~~C~--- 374 (426)
T 3zyj_B 313 LTCECEHNTTGPDCGKCKKNYQG----RPWSP--G-SYLPIPKGAANACIPSISS-----IGTNV---CDNELLHCQ--- 374 (426)
T ss_dssp EEECCCTTEESSSSCEECTTCCS----SCCCC--C-BCCSSSSCBCCCCCCCCC--------------------------
T ss_pred ceeeCCCCCcCCCcccccccccc----CcccC--C-cccccCCCCCCcccCCCCC-----CCcCc---cccCcccCC---
Confidence 478899999999998 5432211 11111 1 000000 111123345552 23666 654 42
Q ss_pred CCceeee-cCceEecCCceeccccccCCCCccccCccccCCccccc--ccccc
Q psy12966 544 NTVGACV-ASAIVKTAGLVQRVTVAPLMTPVYLLREERCARARESV--SAVCA 593 (741)
Q Consensus 544 gG~G~C~-cg~C~C~~G~~G~~~~~~C~~~~~~~~~~~Csg~G~C~--cG~C~ 593 (741)
..|+|. -..|.|.+||+|.. |.. ..|+..|+|+ .|+|.
T Consensus 375 -ngg~C~~~~~C~C~~G~~G~~----Ce~-------c~C~~~g~C~~~~Gqc~ 415 (426)
T 3zyj_B 375 -NGGTCHNNVRCLCPAAYTGIL----CEK-------LRCEEAGSCGSDSGQGA 415 (426)
T ss_dssp -----------------------------------------------------
T ss_pred -CCCCcCCCCCCcCCCCCcCCC----CcC-------CCCCCCCcccCCCCccC
Confidence 236675 24899999999943 311 2477778886 47776
No 82
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=93.74 E-value=0.086 Score=59.97 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=58.2
Q ss_pred CCCcceeEEeecCCCChHHh-----HHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCC
Q psy12966 119 EDYPVDLYYLMDLSNSMRDD-----KDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAP 193 (741)
Q Consensus 119 ~~~pvDly~LmDlS~SM~dd-----l~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~ 193 (741)
...+.++++++|+|+||... +.. +..+..+. +.....+-++|+..|.|..+
T Consensus 365 ~~~~~~v~lvvD~SgSM~~~~~~~~l~~-~~~Aa~l~--~~~~~~~d~vglv~Fs~~~~--------------------- 420 (538)
T 1yvr_A 365 EPTGKRFLLAIDVSASMNQRVLGSILNA-SVVAAAMC--MLVARTEKDSHMVAFSDEML--------------------- 420 (538)
T ss_dssp CCCCCCEEEEEECSGGGGSBSTTSSCBH-HHHHHHHH--HHHHHHCSSEEEEEESSSEE---------------------
T ss_pred CCCCceEEEEEECccccCCCCCCCcHHH-HHHHHHHH--HHHhccCCceEEEEECCCce---------------------
Confidence 35679999999999999842 222 33322222 22233456899999987321
Q ss_pred cceeeeecCCc--cHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCC
Q psy12966 194 YGYHNVMSLSQ--DTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFH 261 (741)
Q Consensus 194 f~f~~~l~lT~--d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H 261 (741)
.+++|. .+....+.+..+ ..|+-|. .+||..|+- . ....++|||+||...+
T Consensus 421 -----~~~~t~~~~l~~~l~~l~~~-~~GgT~i----~~aL~~a~~---~----~~~~~~iIliTDg~~~ 473 (538)
T 1yvr_A 421 -----PCPITVNMLLHEVVEKMSDI-TMGSTDC----ALPMLWAQK---T----NTAADIFIVFTDCETN 473 (538)
T ss_dssp -----CCSCCTTSCHHHHHHHHTTC-CCSCCCT----THHHHHHHH---T----TCCCSEEEEEECCCCC
T ss_pred -----EcCCCCcccHHHHHHHHhcC-CCCCCcH----HHHHHHHHh---c----cCCCCEEEEEcCCCCC
Confidence 123333 355555555543 3343222 245555541 1 2346799999998654
No 83
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=93.59 E-value=0.051 Score=59.40 Aligned_cols=14 Identities=36% Similarity=1.272 Sum_probs=13.0
Q ss_pred eeeeCCCccCCccc
Q psy12966 471 LCECDQSHFGRRCE 484 (741)
Q Consensus 471 ~C~C~~G~~G~~Ce 484 (741)
.|.|.+||.|..|+
T Consensus 273 ~C~C~~nt~G~~Ce 286 (375)
T 4aqt_A 273 MCNCKHNTYGVDCE 286 (375)
T ss_dssp EECCCTTEESTTSC
T ss_pred eeeCcCCCcCCCcc
Confidence 58999999999998
No 84
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=93.13 E-value=1.7 Score=51.60 Aligned_cols=235 Identities=13% Similarity=0.159 Sum_probs=117.1
Q ss_pred CcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCcccccCCCCCCCCCccee---
Q psy12966 121 YPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYH--- 197 (741)
Q Consensus 121 ~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~c~~~f~f~--- 197 (741)
.|.=.+|++|+|.+.. + ++.+...|...|..+..+.++||.+|-.. +.=| +..+. .|...|.|+
T Consensus 131 ~pp~~vFvIDvS~~a~-~---l~~l~~si~~~L~~Lp~~~~VGlITf~~~-v~~y-~l~~~-------~~~~~~vf~G~k 197 (769)
T 2nut_A 131 MPLIFLYVVDTCMEDE-D---LQALKESMQMSLSLLPPTALVGLITFGRM-VQVH-ELGCE-------GISKSYVFRGTK 197 (769)
T ss_dssp CCCEEEEEEECCSCHH-H---HHHHHHHHHHHHTTSCTTCEEEEEEESSE-EEEE-ESSCC-------SSCEEEEEETTS
T ss_pred CCCEEEEEEECCccHH-H---HHHHHHHHHHHHHhCCCCceEEEEEeCCE-EEEE-eCCCC-------CCccceeecCCc
Confidence 3567889999999944 3 55566677778888889999999999654 3212 11111 011111111
Q ss_pred -----------------------------------eeecCCccHHHHHHhccceee-c---cCCCCCcchHHHHHHHHhc
Q psy12966 198 -----------------------------------NVMSLSQDTSRFSAQVKGANV-S---GNLDGPEGGFDAIMQAIVC 238 (741)
Q Consensus 198 -----------------------------------~~l~lT~d~~~F~~~v~~~~i-s---gn~D~PE~~ldAl~qa~vC 238 (741)
-.+++++....+.+.++.+.- . .+.-.|+..+-+.++||+
T Consensus 198 ~~~~~q~~~ml~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~- 276 (769)
T 2nut_A 198 DLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAV- 276 (769)
T ss_dssp CCCSHHHHHHHC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHH-
T ss_pred cccHHHHHHHhCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHH-
Confidence 112233322233333443321 1 122355544444445543
Q ss_pred ccccc--ccCCccEEEEEecCCCCCcCCCCCccceecCCCCccccc--CC--CCccccccCCCCCHHHHHHHHHhcCccE
Q psy12966 239 KEEIG--WRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMD--RN--GMYTHSTVQDYPSISQINMKVKQNSINL 312 (741)
Q Consensus 239 ~~~ig--WR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~--~~--~~Y~~s~~~DYPSv~ql~~~l~e~~I~~ 312 (741)
.-++ .....-||++|.+=.+ ..|-|+|...-.++...-|.| ++ -.+..+.. | ..+|++.+.+++|.+
T Consensus 277 -~lL~~~~~~~GGrI~~F~sg~p--t~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~--f--Y~~la~~~~~~gi~V 349 (769)
T 2nut_A 277 -GLLECTFPNTGARIMMFIGGPA--TQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTK--H--FEALANRAATTGHVI 349 (769)
T ss_dssp -HHHHHHSCSSCCEEEEEESSCC--CSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHH--H--HHHHHHHHHHHTCEE
T ss_pred -HHHhhcccCCCcEEEEEeCCCC--CCCCCCCcCcccccccccccccccchhhhccchHH--H--HHHHHHHHHHCCeEE
Confidence 2222 1123467888876333 446677655433333334432 11 11221111 1 466888888888876
Q ss_pred -EEEEecchhhhH--HHHhhcccCceeeeccCCcchHHHHHHHHhhh-------ccceEEeeeCCCCceEEEEE
Q psy12966 313 -IFAVTAEQIGVY--ERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNK-------ISSSVEMKDTSSSAVKVTYH 376 (741)
Q Consensus 313 -Ifavt~~~~~~Y--~~l~~~i~gs~vg~L~~dSsNiv~lI~~aY~~-------i~s~v~l~~~~~~~~~v~~~ 376 (741)
||+......+++ +.|++.-+|...--=+-+.+...+-++..+.+ +.-..+|+.....+++|+-.
T Consensus 350 DlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~ 423 (769)
T 2nut_A 350 DIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGA 423 (769)
T ss_dssp EEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEE
T ss_pred EEEeccCCccChHHHHHHhhcCCceEEEcCCCchhhHHHHHHHHHhhhcccccceEEEEEEEEEecCCeEEEee
Confidence 577776666554 23444444443321122233333333333332 33345555555777777633
No 85
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=92.95 E-value=0.11 Score=59.26 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=33.2
Q ss_pred eccCCCcceeEEeecCCCChHH-hH-----HHHHHHHHHHHHHHHhhcCceeEEeeEeecc
Q psy12966 116 AQAEDYPVDLYYLMDLSNSMRD-DK-----DRLSALGDQLSASMQEVTSNFRLGFGSFVDK 170 (741)
Q Consensus 116 ~~~~~~pvDly~LmDlS~SM~d-dl-----~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk 170 (741)
...+..+.++++++|+|+||.. .. .+....+..|+ +..+..+=++|+..|.|.
T Consensus 356 ~~~~~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la--~~~~r~~d~v~lv~Fs~~ 414 (535)
T 2nvo_A 356 GNVQPANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMS--LIALRTEPDALTMGFAEQ 414 (535)
T ss_dssp GGCCCCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHH--HHHHHHSSEEEEEEEBSS
T ss_pred hcCCCCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHH--HHHcCcCCceEEEEECCc
Confidence 3334567999999999999976 42 12333333333 222223448999999884
No 86
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=92.77 E-value=0.12 Score=39.52 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.3
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHH
Q psy12966 682 PHVYILGLVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 682 ~~~~~~~Ivlgvi~~ivliGl~lLliw 708 (741)
..++..+|+.||++|++++.+++|++|
T Consensus 5 ~~s~~~aIA~gVVgGv~~v~ii~~~~~ 31 (44)
T 2l2t_A 5 QHARTPLIAAGVIGGLFILVIVGLTFA 31 (44)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEeehHHHHHHHHHHHHHH
Confidence 357889999999999999888888877
No 87
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=92.40 E-value=0.17 Score=45.43 Aligned_cols=27 Identities=37% Similarity=0.783 Sum_probs=22.0
Q ss_pred CCCCCCeEEeCc----eeeeCCCccCCcccc
Q psy12966 459 PNCSGFGTFKCG----LCECDQSHFGRRCEC 485 (741)
Q Consensus 459 ~~Csg~G~c~cG----~C~C~~G~~G~~CeC 485 (741)
..|..+|+|+-. .|.|.+||.|..|+-
T Consensus 20 ~~C~~~g~C~~~~~~y~C~C~~G~~G~~C~~ 50 (114)
T 1aut_L 20 SLCCGHGTCIDGIGSFSCDCRSGWEGRFCQR 50 (114)
T ss_dssp STTTTSEEECCCSSCCCEEECTTEESTTSCE
T ss_pred ccCCCcCCCCCCCCCcEeeCCCCCcCCCcCc
Confidence 347788999753 799999999999874
No 88
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=92.08 E-value=0.15 Score=59.30 Aligned_cols=95 Identities=13% Similarity=0.137 Sum_probs=61.3
Q ss_pred cccCCCceecC---C--CC-ccCCCCCceec--Ccccccee---ecCCC---CCce---eeec--C--ceE-ecCCceec
Q psy12966 506 MECSGRGNCLC---N--QK-SLDNIVNVIIS--HVIVTTEC---CVLDL---NTVG---ACVA--S--AIV-KTAGLVQR 563 (741)
Q Consensus 506 ~~Csg~G~C~c---G--~C-~C~~~~~~~~G--~~~~~Cec---C~~~~---gG~G---~C~c--g--~C~-C~~G~~G~ 563 (741)
..|..+|+|+- | +| .|+. +|+| .. |+- |.... ..++ +|.- + +|. |.+||+|.
T Consensus 9 nPC~~gg~C~n~~~Gsy~C~~C~~---GytGdg~~---CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~ 82 (634)
T 1yo8_A 9 NPCFPGAQCSSFPDGSWSCGFCPV---GFLGNGTH---CEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGN 82 (634)
T ss_dssp CCSCTTCCEEECTTSCEEECCCCT---TBCSCSSS---CCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEEC
T ss_pred CCCCCCCEEecCCCCCeECCcCCC---ccCCCCCC---ccccccccCCCCcccCCccccceeeccCceecccCCCCcccC
Confidence 35887888862 3 59 8964 6888 67 885 75433 2334 7863 2 798 99999993
Q ss_pred -cc----------------cccCCCCccccCccccCCcccccc--------ccccccccccccCCCCCccc---------
Q psy12966 564 -VT----------------VAPLMTPVYLLREERCARARESVS--------AVCANVLKIAREDIPAGSAR--------- 609 (741)
Q Consensus 564 -~~----------------~~~C~~~~~~~~~~~Csg~G~C~c--------G~C~~~~~C~~~~~~gy~G~--------- 609 (741)
+. ...|.... ..|..+++|+. -+|. | .+||.|.
T Consensus 83 ~c~g~g~~~~~~dg~~C~dideC~~~~-----~pC~~~~~Cvnt~~~~~GsY~C~----C----~~Gy~GdG~~Ce~d~D 149 (634)
T 1yo8_A 83 QPVGVGLEAAKTEKQVCEPENPCKDKT-----HNCHKHAECIYLGHFSDPMYKCE----C----QTGYAGDGLICGEDSD 149 (634)
T ss_dssp CCEESSSHHHHSCCCCEEECCTTTTTC-----CCCCTTEEEEECCTTCSSSEEEE----E----CTTEEESSSSEEECTT
T ss_pred ccccccccccccCCCcccccccccCCC-----cccccCccccccccccccceeee----c----cCCccccCcccccccC
Confidence 21 23443211 35777788863 2698 9 8999994
Q ss_pred -CCCCC-cCCCC
Q psy12966 610 -NARPV-LEDVQ 619 (741)
Q Consensus 610 -e~Cp~-~~~C~ 619 (741)
.+|+. ...|.
T Consensus 150 iDeC~~~~~~C~ 161 (634)
T 1yo8_A 150 LDGWPNLNLVCA 161 (634)
T ss_dssp SSSSCSSCCTTT
T ss_pred cccccCCCCccc
Confidence 34555 55676
No 89
>2brq_C Integrin beta-7 subunit; structural protein, cytoskeleton/complex, actin-binding, cytoskeleton, immunoglobulin like, cell adhesion; HET: GSH; 2.10A {Homo sapiens}
Probab=90.75 E-value=0.067 Score=37.82 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=11.0
Q ss_pred cccCCCCCCCCC
Q psy12966 730 AKWDTKLNSLIY 741 (741)
Q Consensus 730 akw~~~~NPly~ 741 (741)
+||++++|||||
T Consensus 1 akw~~~~NPLYk 12 (31)
T 2brq_C 1 LNWKQDSNPLYK 12 (31)
T ss_pred CccccCCCCcee
Confidence 589999999997
No 90
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=88.86 E-value=0.29 Score=36.14 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=16.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLliw 708 (741)
.+++||.|++++++||.++++++|
T Consensus 12 aIAGiVvG~v~gv~li~~l~~~~~ 35 (38)
T 2k1k_A 12 EIVAVIFGLLLGAALLLGILVFRS 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeehHHHHHHHHHHHHHHHHe
Confidence 467777777777777666666555
No 91
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Probab=88.21 E-value=0.13 Score=56.14 Aligned_cols=25 Identities=36% Similarity=0.802 Sum_probs=22.8
Q ss_pred CCCCCeEEeCceeeeCCCccCCc--cc
Q psy12966 460 NCSGFGTFKCGLCECDQSHFGRR--CE 484 (741)
Q Consensus 460 ~Csg~G~c~cG~C~C~~G~~G~~--Ce 484 (741)
.|+|||.|.-|+|.|++||.|.. |.
T Consensus 197 ~CsGhG~C~~g~C~Cd~G~~g~d~~C~ 223 (387)
T 2ddu_A 197 YCSGHGDCISGVCFCDLGYTAAQGTCV 223 (387)
T ss_dssp GGGGSEEEETTEEEECTTEEEETTEEE
T ss_pred ccCCCceecCCeEEecCCcccCCCccc
Confidence 59999999999999999999986 54
No 92
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*
Probab=88.19 E-value=0.023 Score=59.37 Aligned_cols=26 Identities=15% Similarity=-0.015 Sum_probs=21.5
Q ss_pred CCCCCeEEeCc----eeeeCCCccCCcccc
Q psy12966 460 NCSGFGTFKCG----LCECDQSHFGRRCEC 485 (741)
Q Consensus 460 ~Csg~G~c~cG----~C~C~~G~~G~~CeC 485 (741)
.|...|+|+-| .|.|..||.|..||-
T Consensus 39 ~c~ngG~C~~g~~~y~C~Cp~Gf~G~~Ce~ 68 (267)
T 4fbr_A 39 KSDDGGKTLKGTMTYNGEGPIGFRGTLSSA 68 (267)
T ss_dssp ECSSTTSEEEEEEEETTSCCEEEEEEECST
T ss_pred CcCCCCeecCCCCCeEEeCCCCcccccccc
Confidence 56678888765 699999999999974
No 93
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*
Probab=87.51 E-value=0.023 Score=59.32 Aligned_cols=27 Identities=15% Similarity=0.001 Sum_probs=21.2
Q ss_pred CCCCCeEEeCc----eeeeCCCccCCccccc
Q psy12966 460 NCSGFGTFKCG----LCECDQSHFGRRCECD 486 (741)
Q Consensus 460 ~Csg~G~c~cG----~C~C~~G~~G~~CeC~ 486 (741)
-|...|+|+-+ .|.|..||.|..|+..
T Consensus 106 pC~ngG~C~~~~~sy~C~C~~Gf~G~~Ce~~ 136 (267)
T 4fbr_A 106 KSNDGGKTLTGTTTYNGEGPIGFKSEVTDGD 136 (267)
T ss_dssp ECSSTTSEEEEEEEETTSCCEEEEEEECCCC
T ss_pred CCCCCCEEecCCccEEeeCCCCccccCCCCC
Confidence 36677888765 5899999999999854
No 94
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Probab=87.42 E-value=0.2 Score=54.79 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=25.7
Q ss_pred ceecCccccceeecCCCCCceeeecCceEecCCcee
Q psy12966 527 VIISHVIVTTECCVLDLNTVGACVASAIVKTAGLVQ 562 (741)
Q Consensus 527 ~~~G~~~~~CecC~~~~gG~G~C~cg~C~C~~G~~G 562 (741)
.|.|.. ||..++|||.|+-|+|.|++||+|
T Consensus 188 vyIg~~------Cp~~CsGhG~C~~g~C~Cd~G~~g 217 (387)
T 2ddu_A 188 VYISEP------CPSYCSGHGDCISGVCFCDLGYTA 217 (387)
T ss_dssp CEEESC------CGGGGGGSEEEETTEEEECTTEEE
T ss_pred EEeccc------CccccCCCceecCCeEEecCCccc
Confidence 466666 777777999999999999999999
No 95
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=87.32 E-value=0.51 Score=49.32 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=19.4
Q ss_pred CCCCeEEeC----ceeeeCCCccCCccccc
Q psy12966 461 CSGFGTFKC----GLCECDQSHFGRRCECD 486 (741)
Q Consensus 461 Csg~G~c~c----G~C~C~~G~~G~~CeC~ 486 (741)
|..+|+|.- -.|.|.+||.|..|+-+
T Consensus 13 C~~~g~C~~~~~~~~C~C~~g~~g~~C~~~ 42 (317)
T 3h5c_B 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELA 42 (317)
T ss_dssp CTTTCCCCCCSSSCCCCCSSSCCSSSSCCC
T ss_pred CCCCCEeECCCCCeEEECCCCCcCCccccC
Confidence 666666653 26999999999999743
No 96
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Probab=87.06 E-value=0.2 Score=46.85 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=31.9
Q ss_pred CCCccCCCCCce---ecCcccccee---ecCCCC--Cceeeec--C--ceEecCCceeccccccC
Q psy12966 517 NQKSLDNIVNVI---ISHVIVTTEC---CVLDLN--TVGACVA--S--AIVKTAGLVQRVTVAPL 569 (741)
Q Consensus 517 G~C~C~~~~~~~---~G~~~~~Cec---C~~~~g--G~G~C~c--g--~C~C~~G~~G~~~~~~C 569 (741)
..|.|.. +| .|.. |+- |....+ .+|+|+- | .|.|.+||+|..+..+|
T Consensus 88 ~~C~C~~---Gy~~~~g~~---C~dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~~~~C 146 (147)
T 2w86_A 88 VDPICGK---GYSRIKGTQ---CEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146 (147)
T ss_dssp CCTTTCT---TEEEEETTE---EEECCHHHHSTTCSSSSEEEEETTEEEEECCTTCCBCTTSSCB
T ss_pred CcccCCC---ccccCCCCc---cCccccccCCCCCCCCCEEECCCCCEEeeCCCCCccCCCCCee
Confidence 4678854 67 4888 986 753222 3678863 3 79999999996555555
No 97
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Probab=87.02 E-value=0.11 Score=49.45 Aligned_cols=114 Identities=16% Similarity=0.231 Sum_probs=62.1
Q ss_pred CCCCCeEEeC--c--eeeeCCCcc----CCcccccCCCCCCcCcccCccCCCCcccc--CCCceecC--------CCCcc
Q psy12966 460 NCSGFGTFKC--G--LCECDQSHF----GRRCECDAESSQGITSTGCKADANSTMEC--SGRGNCLC--------NQKSL 521 (741)
Q Consensus 460 ~Csg~G~c~c--G--~C~C~~G~~----G~~CeC~~~~~~~~~~~~C~~~~~~~~~C--sg~G~C~c--------G~C~C 521 (741)
.|. +|+|+- | .|.|.+||. |..|+ +.. ...|.... ..| .+++.|+. ..|.|
T Consensus 11 ~C~-~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~-d~~------~~~C~~~~---~~c~~~~~~~C~~~~~~~~~~~~C~C 79 (162)
T 1uzk_A 11 TCI-SGNCVNTPGSYICDCPPDFELNPTRVGCV-DTR------SGNCYLDI---RPRGDNGDTACSNEIGVGVSKASCCC 79 (162)
T ss_dssp SSB-TSEEEEETTEEEEECCTTCEECTTSSBEE-CCC------CEEEEEEC-------------CEEEEEEEECHHHHHT
T ss_pred CCC-CCEeECCCCCEEEeCCCCCeECCCCCccc-CCC------CCcccCCC---cccCCCCCCcccCCcCCcccCceeeC
Confidence 375 688863 3 799999998 88887 110 11254211 112 23555642 35778
Q ss_pred CCCCCcee-cCccccceeecCCCCCceeeecCceEecC--Cceecc------ccccCCCCccccCccccCCcccccc---
Q psy12966 522 DNIVNVII-SHVIVTTECCVLDLNTVGACVASAIVKTA--GLVQRV------TVAPLMTPVYLLREERCARARESVS--- 589 (741)
Q Consensus 522 ~~~~~~~~-G~~~~~CecC~~~~gG~G~C~cg~C~C~~--G~~G~~------~~~~C~~~~~~~~~~~Csg~G~C~c--- 589 (741)
.. +|. |.. |+.|+....+. -.|.|.+ ||+|.. +.+.|... +..|. +|+|+.
T Consensus 80 ~~---G~~~~~~---C~~C~~~~~~~-----y~C~C~~g~G~~~~~~~~~c~dideC~~~-----~~~C~-~g~C~n~~g 142 (162)
T 1uzk_A 80 SL---GKAWGTP---CEMCPAVNTSE-----YKILCPGGEGFRPNPITVILEDIDECQEL-----PGLCQ-GGKCINTFG 142 (162)
T ss_dssp TT---CCEETTT---TEECCCTTSHH-----HHHHCTTCTTEEECTTTCCEEECCHHHHC-----GGGGB-TSEEEECSS
T ss_pred CC---CCCcCCC---cccCCCCCCCC-----ceeECCCCCCcccCCCCCccCccccccCC-----CCCcC-CCEeEcCCC
Confidence 53 455 777 87665321111 1567766 899842 23334211 13576 478863
Q ss_pred -ccccccccccccCCCCCccc
Q psy12966 590 -AVCANVLKIAREDIPAGSAR 609 (741)
Q Consensus 590 -G~C~~~~~C~~~~~~gy~G~ 609 (741)
-+|. | .+||.|.
T Consensus 143 sy~C~----C----~~Gy~g~ 155 (162)
T 1uzk_A 143 SFQCR----C----PTGYYLN 155 (162)
T ss_dssp CEEEE----C----CTTCCBC
T ss_pred CEEee----C----CCCccCC
Confidence 3788 9 8899986
No 98
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=86.17 E-value=0.23 Score=54.21 Aligned_cols=36 Identities=6% Similarity=-0.132 Sum_probs=21.4
Q ss_pred CCccCCCCCceecCccccceee-cCCCC---Cceeee----cCceEecCC
Q psy12966 518 QKSLDNIVNVIISHVIVTTECC-VLDLN---TVGACV----ASAIVKTAG 559 (741)
Q Consensus 518 ~C~C~~~~~~~~G~~~~~CecC-~~~~g---G~G~C~----cg~C~C~~G 559 (741)
.|.|.. ++.|.. |+.| +...+ .+|.|. |-.|.|+..
T Consensus 273 ~C~C~~---nt~G~~---Ce~C~~gy~~~p~~~g~~~~~~~C~~C~Cn~~ 316 (375)
T 4aqt_A 273 MCNCKH---NTYGVD---CEKCLPFFNDRPWRRATAESASECLPCDCNGR 316 (375)
T ss_dssp EECCCT---TEESTT---SCEECTTCCSSCCCCCCSSCCCCCCCCCGGGS
T ss_pred eeeCcC---CCcCCC---cccCCCCCcCCCCCCCccCCCCCCCCCcCcCC
Confidence 477743 689999 9984 43332 334442 446777644
No 99
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=85.87 E-value=17 Score=43.03 Aligned_cols=237 Identities=13% Similarity=0.219 Sum_probs=116.2
Q ss_pred CcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCc-------eeEEeeEeecccccCccccCc----------ccc
Q psy12966 121 YPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSN-------FRLGFGSFVDKVVMPYVSMVP----------KNL 183 (741)
Q Consensus 121 ~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~-------~r~GfgsFvDk~~~P~~~~~p----------~~l 183 (741)
.|.=.+||+|+|..=- .-..++.+...|.+.|..+..+ .++||.+|-.. +. |.+..+ .++
T Consensus 172 ~pp~y~FvIDvs~~av-~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~-vh-~y~l~~~~~~~q~~vv~dl 248 (766)
T 3eh2_A 172 SPPAFIFMIDVSYNAI-RTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKV-LH-FYNVKSSLAQPQMMVVSDV 248 (766)
T ss_dssp CCCEEEEEEECSHHHH-HTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSS-EE-EEECCTTCSSCEEEEECCT
T ss_pred CCCEEEEEEECchhhc-cchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCE-EE-EEECCCCCCCceEEEecCh
Confidence 3566789999984311 0024566667778788877654 89999999543 32 222111 112
Q ss_pred cCCCCCCCCCcceeeeecCCccHHHHHHhcccee-eccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCc
Q psy12966 184 LEPCAGCAAPYGYHNVMSLSQDTSRFSAQVKGAN-VSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHH 262 (741)
Q Consensus 184 ~~Pc~~c~~~f~f~~~l~lT~d~~~F~~~v~~~~-isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~ 262 (741)
.+|= . |..-+-.+++.+......+.+..+. ...+.=.+|.++.+.++|+. ..+.-....-||++|.+=.|- .
T Consensus 249 ~d~f---~-P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~--~~l~~~~~GGkI~~F~s~lP~-t 321 (766)
T 3eh2_A 249 ADMF---V-PLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGM--EALKAAECAGKLFLFHTSLPI-A 321 (766)
T ss_dssp TTCC---C-CCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHH--HHHHHTTCCEEEEEEECSCCC-S
T ss_pred hhhc---c-ccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHH--HHhccCCCCcEEEEEecCCCC-c
Confidence 2211 0 1111224567765555555555432 22332345555555555543 223222234778888876553 3
Q ss_pred CCCCCccceecCCCCcccccCC---CCccccccCCCCCHHHHHHHHHhcCccE-EEEEecchhhhHH--HHhhcccCcee
Q psy12966 263 AGDGKLGGIVKPNDGLCHMDRN---GMYTHSTVQDYPSISQINMKVKQNSINL-IFAVTAEQIGVYE--RLKTHIEGSSS 336 (741)
Q Consensus 263 agDg~L~Gi~~pnDg~Chl~~~---~~Y~~s~~~DYPSv~ql~~~l~e~~I~~-Ifavt~~~~~~Y~--~l~~~i~gs~v 336 (741)
.|-|+|.+- .|. =.+..+ ..|..+. + -..+|+..+.+++|.+ ||+......++.+ .|+++-+|...
T Consensus 322 ~GpG~l~~r---~~~-~~~~sdke~~~~~~a~--~--fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~ 393 (766)
T 3eh2_A 322 EAPGKLKNR---DDR-KLINTDKEKTLFQPQT--G--AYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVY 393 (766)
T ss_dssp SSTTCCCCC---CCG-GGTTSTTGGGGTSCSS--T--HHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEE
T ss_pred CCCcccccc---ccc-ccCCCcchhhhccchH--H--HHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceEE
Confidence 355555332 111 111111 1222222 1 2578999999999865 6777776665542 34444444322
Q ss_pred eeccCC-cch-HHHHHHHHhhh----ccceEEeeeCCCCceEEEEE
Q psy12966 337 GTLTND-SSN-VVDLVKDQYNK----ISSSVEMKDTSSSAVKVTYH 376 (741)
Q Consensus 337 g~L~~d-SsN-iv~lI~~aY~~----i~s~v~l~~~~~~~~~v~~~ 376 (741)
....- ++. ..++.++-++. +.-..+|+.....+++|+-.
T Consensus 394 -~y~~F~~~~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~glkv~~~ 438 (766)
T 3eh2_A 394 -KYASFQVENDQERFLSDLRRDVQKVVGFDAVMRVRTSTGIRAVDF 438 (766)
T ss_dssp -ECTTCCHHHHHHHHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEE
T ss_pred -EeCCCcchhHHHHHHHHHHHHhhhcceeeEEEEEEecCCeEEEEe
Confidence 22211 111 12222222222 23344555555778877643
No 100
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Probab=84.98 E-value=0.52 Score=42.54 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=44.2
Q ss_pred eeeeCCCccCCccc---ccCCCCCCcCcccCccCCCCccccCCCceec---CCCCccCCCCCcee---cCcccccee---
Q psy12966 471 LCECDQSHFGRRCE---CDAESSQGITSTGCKADANSTMECSGRGNCL---CNQKSLDNIVNVII---SHVIVTTEC--- 538 (741)
Q Consensus 471 ~C~C~~G~~G~~Ce---C~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~---cG~C~C~~~~~~~~---G~~~~~Cec--- 538 (741)
.|.|.+||.|..++ |. ..|. + ..|. +.|+ -..|.|+. +|. |.. |+-
T Consensus 25 ~C~C~~Gy~g~~~~~~~C~---------~~C~--~---~~C~--~~C~~~~~y~C~C~~---Gy~~~~g~~---C~dide 82 (118)
T 1dx5_I 25 LCVCAEGFAPIPHEPHRCQ---------MFCN--Q---TACP--ADCDPNTQASCECPE---GYILDDGFI---CTDIDE 82 (118)
T ss_dssp EEECCTTEEEETTEEEEEE---------ECCC--S---SEEE--CEECTTSTTCEECCT---TEEEETTTE---EEECCH
T ss_pred EeECCCCccccCCCCCccc---------cccC--C---CCCC--CcccCCCCeEeECCC---CccCCCCCc---cccccc
Confidence 68999999998653 21 1132 1 2343 3454 24688954 688 788 875
Q ss_pred ecCCCCCceeeec--C--ceEecCCceec
Q psy12966 539 CVLDLNTVGACVA--S--AIVKTAGLVQR 563 (741)
Q Consensus 539 C~~~~gG~G~C~c--g--~C~C~~G~~G~ 563 (741)
|.....=.++|.- | .|.|.+||+|.
T Consensus 83 C~~~~~C~~~C~n~~g~y~C~C~~G~~g~ 111 (118)
T 1dx5_I 83 CENGGFCSGVCHNLPGTFECICGPDSALA 111 (118)
T ss_dssp HHHCSSCSSEEEECSSSEEEEECSSSSCE
T ss_pred cCCCCCCcCeEEeCCCCEEEECCCCCccC
Confidence 6431111577863 2 79999999984
No 101
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=84.91 E-value=0.18 Score=56.89 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=0.0
Q ss_pred cccC-CCceecCCCCccCCCCCceecCcccccee
Q psy12966 506 MECS-GRGNCLCNQKSLDNIVNVIISHVIVTTEC 538 (741)
Q Consensus 506 ~~Cs-g~G~C~cG~C~C~~~~~~~~G~~~~~Cec 538 (741)
..|+ |+|+..||.|.|.. +|.|+. |||
T Consensus 467 ~~C~~g~G~~~CG~C~C~~---G~~G~~---CeC 494 (503)
T 3v4v_B 467 PHCSDGQGHLQCGVCSCAP---GRLGRL---CES 494 (503)
T ss_dssp ----------------------------------
T ss_pred cccCCCCeeEeCCceECcC---CCcCCC---CCC
Confidence 5797 89999999999954 789999 986
No 102
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=82.84 E-value=33 Score=40.67 Aligned_cols=237 Identities=15% Similarity=0.250 Sum_probs=113.1
Q ss_pred CcceeEEeecCCCC-hHHhHHHHHHHHHHHHHHHHhhcCc-------eeEEeeEeecccccCccccCcccccCCC----C
Q psy12966 121 YPVDLYYLMDLSNS-MRDDKDRLSALGDQLSASMQEVTSN-------FRLGFGSFVDKVVMPYVSMVPKNLLEPC----A 188 (741)
Q Consensus 121 ~pvDly~LmDlS~S-M~ddl~~lk~l~~~l~~~l~~~t~~-------~r~GfgsFvDk~~~P~~~~~p~~l~~Pc----~ 188 (741)
.|.=.+||+|+|.. .+. ..++.+...|.+.|..+..+ .++||.+|-.. +. |.+..+ .+..|= .
T Consensus 176 ~pp~y~FvIDvs~~av~s--g~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~-vh-~y~l~~-~~~q~q~~vv~ 250 (770)
T 3efo_B 176 NPPAFIFMIDVSYSNIKN--GLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKV-LH-FFNVKS-NLAQPQMMVVT 250 (770)
T ss_dssp CCCEEEEEEECSHHHHHT--THHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSS-EE-EEECCT-TCSSCEEEEEC
T ss_pred CCcEEEEEEEcchhhccc--hHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCE-EE-EEeCCC-cccCceEEEec
Confidence 35667799999754 222 13555566777777777553 89999998543 32 222211 011110 0
Q ss_pred CCCCCc---ceeeeecCCccHHHHHHhcccee--eccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcC
Q psy12966 189 GCAAPY---GYHNVMSLSQDTSRFSAQVKGAN--VSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHA 263 (741)
Q Consensus 189 ~c~~~f---~f~~~l~lT~d~~~F~~~v~~~~--isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~a 263 (741)
.-+.+| .-+-.+++.+......+.++.+. ...+. .+|.++.+.++|+. ..+.-....-||++|.+=.|- ..
T Consensus 251 d~~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~-~~~t~~g~al~aa~--~~l~~~~~GGkI~~F~s~lP~-t~ 326 (770)
T 3efo_B 251 DVGEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSN-ENETVFAPVIQAGM--EALKAADCPGKLFIFHSSLPT-AE 326 (770)
T ss_dssp CTTSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCC-CCCCCCHHHHHHHH--HHHHHHTCCEEEEEEECSCCC-SS
T ss_pred ccccccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCC-CCcchHHHHHHHHH--HHhccCCCCcEEEEEecCCCC-cC
Confidence 011112 11223566665554444444432 22222 45665555555543 222221123588888876553 23
Q ss_pred CCCCccceecCCCCcccccCC---CCccccccCCCCCHHHHHHHHHhcCccE-EEEEecchhhhHH--HHhhcccCceee
Q psy12966 264 GDGKLGGIVKPNDGLCHMDRN---GMYTHSTVQDYPSISQINMKVKQNSINL-IFAVTAEQIGVYE--RLKTHIEGSSSG 337 (741)
Q Consensus 264 gDg~L~Gi~~pnDg~Chl~~~---~~Y~~s~~~DYPSv~ql~~~l~e~~I~~-Ifavt~~~~~~Y~--~l~~~i~gs~vg 337 (741)
|-|+|..--.++ .+..+ ..|..++ + -..+|+..+.+++|.+ ||+......++.+ .|+++-+|...
T Consensus 327 GpG~l~~r~~~~----~~~t~ke~~~~~~a~--~--fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~- 397 (770)
T 3efo_B 327 APGKLKNRDDKK----LVNTDKEKILFQPQT--N--VYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLY- 397 (770)
T ss_dssp STTCCCCCCCCC----CSSCSCGGGGGSCSS--S--HHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEE-
T ss_pred CCcccccccccc----ccCCcchhhhhcchH--H--HHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceEE-
Confidence 455553321111 11111 1122222 1 2678999999998865 6777776665542 34444444422
Q ss_pred eccCCcc--hHHHHHHHHhh----hccceEEeeeCCCCceEEEE
Q psy12966 338 TLTNDSS--NVVDLVKDQYN----KISSSVEMKDTSSSAVKVTY 375 (741)
Q Consensus 338 ~L~~dSs--Niv~lI~~aY~----~i~s~v~l~~~~~~~~~v~~ 375 (741)
....-.. ....+.++-++ ++.-..+|+.....+++|+-
T Consensus 398 ~y~~F~~~~~~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~ 441 (770)
T 3efo_B 398 KYNNFQMHLDRQQFLNDLRNDIEKKIGFDAIMRVRTSTGFRATD 441 (770)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHSCEEEEEEEEEEECTTEEEEE
T ss_pred EecCCcchhHHHHHHHHHHHhhhhceeeeEEEEEEecCCeEEEE
Confidence 2221111 11222222222 23334455555577887763
No 103
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=80.96 E-value=0.73 Score=50.74 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=12.9
Q ss_pred CCCccCCCCCceecCccccceeec
Q psy12966 517 NQKSLDNIVNVIISHVIVTTECCV 540 (741)
Q Consensus 517 G~C~C~~~~~~~~G~~~~~CecC~ 540 (741)
|+|.|.. .+.|.. ||.|.
T Consensus 286 g~C~C~h---nT~G~~---CErC~ 303 (403)
T 2y38_A 286 LQCACQH---NTCGGS---CDRCC 303 (403)
T ss_dssp EEECCCT---TEESSS---CCEEC
T ss_pred eEeECcC---cCcCCC---CCCCC
Confidence 4577843 588999 99754
No 104
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=80.49 E-value=0.97 Score=35.86 Aligned_cols=27 Identities=30% Similarity=0.632 Sum_probs=21.6
Q ss_pred CCCCCeEEe-----Cc----eeeeCCCccCCccccc
Q psy12966 460 NCSGFGTFK-----CG----LCECDQSHFGRRCECD 486 (741)
Q Consensus 460 ~Csg~G~c~-----cG----~C~C~~G~~G~~CeC~ 486 (741)
-|.+.|+|. -+ .|.|.+||.|..||-.
T Consensus 15 pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~ 50 (55)
T 3u7u_G 15 FCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNY 50 (55)
T ss_dssp TSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEE
T ss_pred CCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCcc
Confidence 588889993 22 6999999999999853
No 105
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=80.04 E-value=1.8 Score=40.70 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=21.2
Q ss_pred CCCCCeEEeC--c--eeeeCCCccCCcccc
Q psy12966 460 NCSGFGTFKC--G--LCECDQSHFGRRCEC 485 (741)
Q Consensus 460 ~Csg~G~c~c--G--~C~C~~G~~G~~CeC 485 (741)
-|..+|+|.- | .|.|.+||.|..|+-
T Consensus 55 pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~ 84 (146)
T 1x7a_L 55 PCLNGGLCKDDINSYECWCQVGFEGKNCEL 84 (146)
T ss_dssp SSCTTCEEEECSSCEEEECCSSEESTTTCE
T ss_pred CCCCCCEeECCCCCEEEecCCCCcCCcCCC
Confidence 3877788863 2 799999999999974
No 106
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Probab=80.00 E-value=1.1 Score=35.13 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=23.2
Q ss_pred CCCCCCCeEEe--Cc----eeeeCCCccCCccccc
Q psy12966 458 SPNCSGFGTFK--CG----LCECDQSHFGRRCECD 486 (741)
Q Consensus 458 s~~Csg~G~c~--cG----~C~C~~G~~G~~CeC~ 486 (741)
+.-|...|+|. -+ .|.|.+||.|..||-.
T Consensus 11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~~ 45 (53)
T 1nql_B 11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 45 (53)
T ss_dssp CCEECTTCEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred CCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCcC
Confidence 34587789996 33 7999999999999853
No 107
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Probab=79.74 E-value=0.79 Score=45.31 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=23.2
Q ss_pred cccCCCceec-CCCCccCCCCCceecCcccccee
Q psy12966 506 MECSGRGNCL-CNQKSLDNIVNVIISHVIVTTEC 538 (741)
Q Consensus 506 ~~Csg~G~C~-cG~C~C~~~~~~~~G~~~~~Cec 538 (741)
..|+++|.|+ .++|.|+. ||.|.+ ||-
T Consensus 153 ~~C~ngG~Cv~P~~C~C~~---Gw~G~~---C~~ 180 (188)
T 2ygo_A 153 GGCRNGGFCNERRICECPD---GFHGPH---CEG 180 (188)
T ss_dssp TCCCTTCEECTTSCEECCT---TCBTTT---TCB
T ss_pred CCCCCCCEeCCCCcccCcC---CCCCCC---CcC
Confidence 4699999998 89999965 799999 873
No 108
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=79.43 E-value=1.1 Score=32.22 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=20.2
Q ss_pred CCCCCeEEeC--c--eeeeCCCccCCccc
Q psy12966 460 NCSGFGTFKC--G--LCECDQSHFGRRCE 484 (741)
Q Consensus 460 ~Csg~G~c~c--G--~C~C~~G~~G~~Ce 484 (741)
-|...|+|.- | .|.|.+||.|..||
T Consensus 10 pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce 38 (39)
T 1edm_B 10 PCLNGGSCKDDINSYECWCPFGFEGKNCE 38 (39)
T ss_dssp CCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred CCCCCCEeEcCCCceEeECCCCCcCCccC
Confidence 4777788863 3 69999999999997
No 109
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=78.98 E-value=0.96 Score=33.89 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=21.6
Q ss_pred CCCCCeEEe--C----ceeeeCCCccCCccccc
Q psy12966 460 NCSGFGTFK--C----GLCECDQSHFGRRCECD 486 (741)
Q Consensus 460 ~Csg~G~c~--c----G~C~C~~G~~G~~CeC~ 486 (741)
-|...|+|. - -.|.|.+||.|..||-.
T Consensus 10 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~ 42 (45)
T 1a3p_A 10 YCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTR 42 (45)
T ss_dssp CCSSSCEEEECTTTSSEEEECCTTEETTTTCEE
T ss_pred CCCCCCEEEeecCCCCEEEEcCCCCcCCcCCcc
Confidence 387778996 2 27999999999999853
No 110
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=78.77 E-value=0.6 Score=52.32 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=17.3
Q ss_pred cccC-CCceecCCCCccCCCCCceecCccccce
Q psy12966 506 MECS-GRGNCLCNQKSLDNIVNVIISHVIVTTE 537 (741)
Q Consensus 506 ~~Cs-g~G~C~cG~C~C~~~~~~~~G~~~~~Ce 537 (741)
..|+ |+|+..||.|.|.. +|.|+. ||
T Consensus 446 ~~C~~g~G~~~CG~C~C~~---G~~G~~---Ce 472 (472)
T 3t3p_B 446 HRCNNGNGTFECGVCRCGP---GWLGSQ---CE 472 (472)
T ss_dssp TTTTTTTEEEETTEEEECT---TC---------
T ss_pred cccCCCCeeEeCCceECcC---CCCCCC---CC
Confidence 6798 89999999999954 689999 86
No 111
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=78.47 E-value=0.95 Score=39.05 Aligned_cols=44 Identities=16% Similarity=0.440 Sum_probs=25.0
Q ss_pred eeeeCCCccCCcccc-cCCCCCCcCcccCccCCCCccccCCCceecC----C--CCccCCCCCceecCc
Q psy12966 471 LCECDQSHFGRRCEC-DAESSQGITSTGCKADANSTMECSGRGNCLC----N--QKSLDNIVNVIISHV 532 (741)
Q Consensus 471 ~C~C~~G~~G~~CeC-~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~c----G--~C~C~~~~~~~~G~~ 532 (741)
.|.|.+||. .|+. +. ..|.. ..|.+.|+|+. + +|.|+. +|+|+.
T Consensus 33 ~C~C~~G~~--~C~~~~~--------~~C~~-----~pC~ngg~C~~~~~~~~~~C~C~~---G~~G~~ 83 (91)
T 1tpg_A 33 YCWCNSGRA--QCHSVPV--------KSCSE-----PRCFNGGTCQQALYFSDFVCQCPE---GFAGKS 83 (91)
T ss_dssp EEECSSSCC--BCCEECE--------EECSS-----CCSCTTCEEEEESSSSCEEEECCT---TCBSSS
T ss_pred EeECCCCCc--ccccCcC--------CcccC-----CCCCCCCEeecCCCCCCeEeECCC---CCcCCc
Confidence 478888886 5652 11 34641 34777777762 1 366643 566666
No 112
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=78.46 E-value=1.2 Score=41.50 Aligned_cols=26 Identities=35% Similarity=0.683 Sum_probs=21.4
Q ss_pred CCCCCeEEeC--c--eeeeCCCccCCcccc
Q psy12966 460 NCSGFGTFKC--G--LCECDQSHFGRRCEC 485 (741)
Q Consensus 460 ~Csg~G~c~c--G--~C~C~~G~~G~~CeC 485 (741)
-|..+|+|.- | .|.|.+||.|..|+-
T Consensus 54 pC~n~g~C~~~~g~y~C~C~~G~~G~~C~~ 83 (142)
T 2c4f_L 54 PCQNGGSCKDQLQSYICFCLPAFEGRNCET 83 (142)
T ss_dssp CCCTTCEEEEETTEEEEECCTTEESTTSCE
T ss_pred CcCCCCEEeCCCCCEEeeCCCCccCCcccc
Confidence 4877788864 3 799999999999974
No 113
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Probab=78.37 E-value=0.86 Score=35.34 Aligned_cols=26 Identities=31% Similarity=0.648 Sum_probs=21.4
Q ss_pred CCCCCeEEeC------c--eeeeCCCccCCcccc
Q psy12966 460 NCSGFGTFKC------G--LCECDQSHFGRRCEC 485 (741)
Q Consensus 460 ~Csg~G~c~c------G--~C~C~~G~~G~~CeC 485 (741)
-|.+.|+|.- + .|.|.+||.|..||-
T Consensus 15 pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~ 48 (52)
T 3ca7_A 15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48 (52)
T ss_dssp TSCTTCEEEEEEETTEEEEEEECCTTEESTTSCE
T ss_pred cCCCCCEEecCccCCCCCEEEECCCCCcCCCCcc
Confidence 4777788873 2 799999999999985
No 114
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=78.13 E-value=3.7 Score=31.28 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=5.8
Q ss_pred CchhhHHHHHHH
Q psy12966 684 VYILGLVLGVIG 695 (741)
Q Consensus 684 ~~~~~Ivlgvi~ 695 (741)
.....|+.+++|
T Consensus 9 ~~~~~Ia~~vVG 20 (44)
T 2jwa_A 9 SPLTSIISAVVG 20 (44)
T ss_dssp CSHHHHHHHHHH
T ss_pred CcccchHHHHHH
Confidence 334445555554
No 115
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=78.02 E-value=1.4 Score=38.01 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=41.5
Q ss_pred CCccCCCCCceecCcccccee--ecCCCCCceeeec----CceEecCCceecc---ccccCCCCccccCccccCCccccc
Q psy12966 518 QKSLDNIVNVIISHVIVTTEC--CVLDLNTVGACVA----SAIVKTAGLVQRV---TVAPLMTPVYLLREERCARARESV 588 (741)
Q Consensus 518 ~C~C~~~~~~~~G~~~~~Cec--C~~~~gG~G~C~c----g~C~C~~G~~G~~---~~~~C~~~~~~~~~~~Csg~G~C~ 588 (741)
+|.|.. +|+|.+ |+. |.. ..|.- -.|.|.+||+ .+ ....|.. ..|...|+|+
T Consensus 3 ~C~C~~---g~~g~~---c~~~~c~~-----~pC~n~~~~y~C~C~~G~~-~C~~~~~~~C~~-------~pC~ngg~C~ 63 (91)
T 1tpg_A 3 QVICRD---EKTQMI---YQQHQSWL-----RPVLRSNRVEYCWCNSGRA-QCHSVPVKSCSE-------PRCFNGGTCQ 63 (91)
T ss_dssp CCCCBC---SSSCCB---CCSSCEEE-----EECSSSSCEEEEECSSSCC-BCCEECEEECSS-------CCSCTTCEEE
T ss_pred eeECCC---CCcCCe---ECCCcccC-----CccccCCCCcEeECCCCCc-ccccCcCCcccC-------CCCCCCCEee
Confidence 577853 688988 765 421 11221 1689999998 32 2345632 3487788886
Q ss_pred c------ccccccccccccCCCCCccc
Q psy12966 589 S------AVCANVLKIAREDIPAGSAR 609 (741)
Q Consensus 589 c------G~C~~~~~C~~~~~~gy~G~ 609 (741)
- -+|. | .+||.|.
T Consensus 64 ~~~~~~~~~C~----C----~~G~~G~ 82 (91)
T 1tpg_A 64 QALYFSDFVCQ----C----PEGFAGK 82 (91)
T ss_dssp EESSSSCEEEE----C----CTTCBSS
T ss_pred cCCCCCCeEeE----C----CCCCcCC
Confidence 3 2699 9 8899985
No 116
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=77.82 E-value=1.4 Score=33.42 Aligned_cols=25 Identities=32% Similarity=0.715 Sum_probs=20.1
Q ss_pred CCCCCeEEeC--c----eeeeCCCccCCcccc
Q psy12966 460 NCSGFGTFKC--G----LCECDQSHFGRRCEC 485 (741)
Q Consensus 460 ~Csg~G~c~c--G----~C~C~~G~~G~~CeC 485 (741)
-|.. |+|.- + .|.|.+||.|.+||-
T Consensus 13 pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~ 43 (46)
T 1k36_A 13 YCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEH 43 (46)
T ss_dssp SCSS-EEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred CCCC-CEeeccCCCCCEEEECCCCCccCCCCc
Confidence 4765 99862 1 699999999999985
No 117
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=77.61 E-value=2.5 Score=31.12 Aligned_cols=26 Identities=19% Similarity=0.056 Sum_probs=18.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHH
Q psy12966 683 HVYILGLVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 683 ~~~~~~Ivlgvi~~ivliGl~lLliw 708 (741)
..++.+|++|+++|++++.++++++|
T Consensus 9 ~~~~~~I~~~vv~Gv~ll~~iv~~~~ 34 (41)
T 2k9y_A 9 GSGNLAVIGGVAVGVVLLLVLAGVGF 34 (41)
T ss_dssp CCSSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEeehhHHHHHHHHHHHHhe
Confidence 56788899999999998663333333
No 118
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=77.22 E-value=1.5 Score=34.05 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=21.8
Q ss_pred CCCCCeEEe--Cc----eeeeCCCccCCccccc
Q psy12966 460 NCSGFGTFK--CG----LCECDQSHFGRRCECD 486 (741)
Q Consensus 460 ~Csg~G~c~--cG----~C~C~~G~~G~~CeC~ 486 (741)
-|...|+|. -+ .|.|.+||.|..||-.
T Consensus 13 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~ 45 (53)
T 1egf_A 13 YCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45 (53)
T ss_dssp SSCSSCEEEEESSSSCEEEECCTTCCSSSSCCC
T ss_pred cCCCCcEEEeeCCCCCEEEECCCCCcCCcCCcc
Confidence 377778887 32 6999999999999854
No 119
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=76.76 E-value=1 Score=51.38 Aligned_cols=97 Identities=15% Similarity=0.251 Sum_probs=53.9
Q ss_pred CCceEEEEEeecCCCCCCCCCCCCCCCcccCcEEEEEEEEEeccCCCCCcccceEEEEEecccceeEEEecccCCCccCC
Q psy12966 368 SSAVKVTYHSKCLNKDGPSKPTAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCE 447 (741)
Q Consensus 368 ~~~~~v~~~s~C~~~~~~~~~~~~C~~v~~g~~V~F~v~v~~~~Cp~~~~~~~~~~~I~~~g~~e~l~v~l~~~C~C~Ce 447 (741)
.+|+.+.|... +.|-- -..|+|--+.||...... -.|.=.+.|-..+..|++...|--.=+
T Consensus 180 ~~g~ylafqd~-----------gac~~-------l~svrv~y~~C~~~~~~l-a~fp~t~~~~~~~~l~~v~G~Cv~~a~ 240 (536)
T 3fl7_A 180 RKGFYLAFQDI-----------GACVA-------LLSVRVYYKKCPELLQGL-AHFPETIAGSDAPSLATVAGTCVDHAV 240 (536)
T ss_dssp SSEEEEEEEES-----------SCEEE-------EEEEEEEEEEECCEEETT-EEECCEECCSSTTCCEEEECEECTTEE
T ss_pred cceEEEEeccC-----------CceEE-------EEEEEEEEEeChHHhhcc-ccCCCcCCCccccceEEEeeEECCCCC
Confidence 67888888852 34633 345777778999642210 122212222211224677776643222
Q ss_pred CCCCCCCCCCCCCCCCCeEEe--CceeeeCCCccCCcccc
Q psy12966 448 VDGHPSFVRNSPNCSGFGTFK--CGLCECDQSHFGRRCEC 485 (741)
Q Consensus 448 ~~~~~~~~~~s~~Csg~G~c~--cG~C~C~~G~~G~~CeC 485 (741)
.. ++.......|++.|.+. -|.|.|.+||.+..+.|
T Consensus 241 ~~--~~~~~p~~~C~~dG~w~~p~G~C~C~~G~e~~~~~C 278 (536)
T 3fl7_A 241 VP--PGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDAC 278 (536)
T ss_dssp CC--C--CCCEEEECTTSCBCCCBCCCEECTTEEEETTEE
T ss_pred cC--CCCCCceEEEcCCCCEecccCcEeccCccccCCcee
Confidence 21 00111233699999984 49999999998555555
No 120
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=76.53 E-value=1.2 Score=49.41 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=0.0
Q ss_pred ccCCcccccc-ccccccccccccCCCCCccc--CCCC
Q psy12966 580 RCARARESVS-AVCANVLKIAREDIPAGSAR--NARP 613 (741)
Q Consensus 580 ~Csg~G~C~c-G~C~~~~~C~~~~~~gy~G~--e~Cp 613 (741)
.|...|+|.- .+|. | .+||+|. +.|+
T Consensus 372 ~C~ngg~C~~~~~C~----C----~~G~~G~~Ce~c~ 400 (426)
T 3zyj_B 372 HCQNGGTCHNNVRCL----C----PAAYTGILCEKLR 400 (426)
T ss_dssp -------------------------------------
T ss_pred cCCCCCCcCCCCCCc----C----CCCCcCCCCcCCC
Confidence 4655666753 4788 9 8999997 5554
No 121
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Probab=75.52 E-value=1.4 Score=35.26 Aligned_cols=27 Identities=30% Similarity=0.610 Sum_probs=21.7
Q ss_pred CCCCCeEEe--C--c----eeeeCCCccCCccccc
Q psy12966 460 NCSGFGTFK--C--G----LCECDQSHFGRRCECD 486 (741)
Q Consensus 460 ~Csg~G~c~--c--G----~C~C~~G~~G~~CeC~ 486 (741)
-|...|+|. - + .|.|.+||.|.+||..
T Consensus 15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~~ 49 (58)
T 3ltf_D 15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49 (58)
T ss_dssp TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCEE
T ss_pred cCCCCCEEeCCccCCCCCEEeECCCCCccCCCccc
Confidence 377778886 2 2 6999999999999963
No 122
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}
Probab=75.27 E-value=1.4 Score=41.38 Aligned_cols=27 Identities=33% Similarity=0.763 Sum_probs=23.4
Q ss_pred CCCCCCeEEeC----ceeeeCCCccCCcccc
Q psy12966 459 PNCSGFGTFKC----GLCECDQSHFGRRCEC 485 (741)
Q Consensus 459 ~~Csg~G~c~c----G~C~C~~G~~G~~CeC 485 (741)
..|+++|+|.- ..|.|.+||.|..||-
T Consensus 125 ~~C~~~g~C~~~~~~~~c~C~~g~~g~~C~~ 155 (164)
T 3cfw_A 125 WSCSGHGECVEIINNYTCNCDVGYYGPQCQF 155 (164)
T ss_dssp TSSCSSEEEEEETTEEEEEECTTCBSSSSCB
T ss_pred CcCCCCCeecccCCCceeeeCCCcccccccc
Confidence 46999999973 4899999999999984
No 123
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=74.27 E-value=12 Score=31.91 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhccc---------CCCCCCCCC
Q psy12966 686 ILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKERMLAKW---------DTKLNSLIY 741 (741)
Q Consensus 686 ~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~kFekE~~~akw---------~~~~NPly~ 741 (741)
++++++||+ .|-|+-|+++-++..+-.-...++|+|=.+..+-.+. .+..||.|.
T Consensus 14 v~gvi~gil-liGllllliwk~~~~i~DrrE~~kFEkE~~~~~w~~~~NPlyk~~ttt~~nP~~~ 77 (79)
T 2knc_B 14 LLSVMGAIL-LIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTANNPLYKEATSTFTNITYR 77 (79)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHCSCCSCCCSCC
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccCCccCccCCCcC
Confidence 356677654 4455556777777888888888888887776654333 456799884
No 124
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=74.04 E-value=1.6 Score=35.05 Aligned_cols=26 Identities=31% Similarity=0.660 Sum_probs=21.1
Q ss_pred CCCCeEEeC---------ceeeeCCCccCCccccc
Q psy12966 461 CSGFGTFKC---------GLCECDQSHFGRRCECD 486 (741)
Q Consensus 461 Csg~G~c~c---------G~C~C~~G~~G~~CeC~ 486 (741)
|...|+|.- -.|.|.+||.|..|+-.
T Consensus 14 C~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~ 48 (63)
T 1hae_A 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTEN 48 (63)
T ss_dssp SCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEE
T ss_pred CCCCcEEecCCccCCCCCEEEECCCCCcCCccCcC
Confidence 777788862 26999999999999854
No 125
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=71.05 E-value=1.1 Score=44.58 Aligned_cols=25 Identities=36% Similarity=0.812 Sum_probs=0.0
Q ss_pred CCCCeEEeC--c--eeeeCCCccCCcccc
Q psy12966 461 CSGFGTFKC--G--LCECDQSHFGRRCEC 485 (741)
Q Consensus 461 Csg~G~c~c--G--~C~C~~G~~G~~CeC 485 (741)
|..+|+|.- | .|.|.+||.|..|+-
T Consensus 50 C~ngg~C~n~~g~y~C~C~~Gf~G~~Ce~ 78 (195)
T 1nfu_B 50 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78 (195)
T ss_dssp -----------------------------
T ss_pred CCCCCEeECCCCCeeEeCCCCceeccccc
Confidence 766677753 2 699999999999974
No 126
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=67.22 E-value=5.4 Score=33.36 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=36.6
Q ss_pred ccCCCceecC----CCCccCCCCCcee--cCcccccee---ecCCCC-Cceeeec--C--ceEecCCceeccccccC
Q psy12966 507 ECSGRGNCLC----NQKSLDNIVNVII--SHVIVTTEC---CVLDLN-TVGACVA--S--AIVKTAGLVQRVTVAPL 569 (741)
Q Consensus 507 ~Csg~G~C~c----G~C~C~~~~~~~~--G~~~~~Cec---C~~~~g-G~G~C~c--g--~C~C~~G~~G~~~~~~C 569 (741)
.|. +|+|+. -+|.|+. +|. |.. |+- |..... .+|+|.- | .|.|.+||+|... ..|
T Consensus 13 ~C~-~g~C~n~~g~y~C~C~~---Gy~~~g~~---C~dideC~~~~~C~~~~C~n~~g~y~C~C~~G~~g~~~-~~C 81 (82)
T 1emn_A 13 VCK-HGQCINTDGSYRCECPF---GYILAGNE---CVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPM-MTC 81 (82)
T ss_dssp SCS-SSEECCCSSCCCEECCT---TEEEETTE---EEECCGGGTCCTTSSSCEEECSSSEEECCSSSSCCCSS-SCC
T ss_pred CcC-CCEEEecCCCEEEECCC---CeECCCCc---cCCcccccCCCCCCCCEeECCCCCEEeECCCCeEeCCC-Ccc
Confidence 475 478862 4799954 676 888 876 753222 4578863 3 7999999998443 444
No 127
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=65.89 E-value=4.9 Score=35.75 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=29.1
Q ss_pred ccCCCceecCC----CCccCCCCCceecCcccccee------ecCCCCC-ceeeec--C--ceEecCCceeccccccC
Q psy12966 507 ECSGRGNCLCN----QKSLDNIVNVIISHVIVTTEC------CVLDLNT-VGACVA--S--AIVKTAGLVQRVTVAPL 569 (741)
Q Consensus 507 ~Csg~G~C~cG----~C~C~~~~~~~~G~~~~~Cec------C~~~~gG-~G~C~c--g--~C~C~~G~~G~~~~~~C 569 (741)
.|.++|+|+.. +|.|.. +|+|.. |+. |....++ ..+|.- | .|.|.+||+|......|
T Consensus 21 ~C~~~g~C~~~~~~y~C~C~~---G~~G~~---C~~~~~~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~g~~C 92 (114)
T 1aut_L 21 LCCGHGTCIDGIGSFSCDCRS---GWEGRF---CQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQC 92 (114)
T ss_dssp TTTTSEEECCCSSCCCEEECT---TEESTT---SCEECCSSSSSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCE
T ss_pred cCCCcCCCCCCCCCcEeeCCC---CCcCCC---cCcCCcCCcCcCCCCCCCCEeECCCCCEEeECCCCeeECCCCCcc
Confidence 37777777632 566643 567776 664 2211110 115542 1 46666666664444444
No 128
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A
Probab=65.61 E-value=5.2 Score=36.44 Aligned_cols=27 Identities=33% Similarity=0.710 Sum_probs=21.2
Q ss_pred CCCCeEEeCc-------eeeeCCCccCCcccccC
Q psy12966 461 CSGFGTFKCG-------LCECDQSHFGRRCECDA 487 (741)
Q Consensus 461 Csg~G~c~cG-------~C~C~~G~~G~~CeC~~ 487 (741)
|...|+|..+ .|.|.+||.|..||...
T Consensus 3 C~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~ 36 (122)
T 2fd6_A 3 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK 36 (122)
T ss_dssp CCSSCEEEECTTTTTCEEEECCTTEESTTSCEES
T ss_pred CCCcCCcCCCcccCCCCCccCCCCCCCccccccC
Confidence 5566788543 69999999999999753
No 129
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=65.22 E-value=3.4 Score=32.65 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=18.7
Q ss_pred cccCCCceec-----C----CCCccCCCCCceecCcccccee
Q psy12966 506 MECSGRGNCL-----C----NQKSLDNIVNVIISHVIVTTEC 538 (741)
Q Consensus 506 ~~Csg~G~C~-----c----G~C~C~~~~~~~~G~~~~~Cec 538 (741)
..|.+.|+|. . -.|.|+. +|+|+. ||-
T Consensus 14 ~pC~NgGtC~~~~~~d~~~~y~C~C~~---g~~G~~---CE~ 49 (55)
T 3u7u_G 14 TFCVNGGECFMVKDLSNPSRYLCKCPN---EFTGDR---CQN 49 (55)
T ss_dssp TTSCTTCEEEEECCC--CCCEEEEECT---TEESTT---SCE
T ss_pred CCCCCCCCcCCCCccCCCCCEeEeCCC---CCcCCC---cCc
Confidence 5688889993 2 2588854 688888 774
No 130
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A
Probab=65.12 E-value=2.2 Score=39.90 Aligned_cols=26 Identities=31% Similarity=0.710 Sum_probs=21.9
Q ss_pred CCCCCeEEeCc----eeeeCCCccCCcccc
Q psy12966 460 NCSGFGTFKCG----LCECDQSHFGRRCEC 485 (741)
Q Consensus 460 ~Csg~G~c~cG----~C~C~~G~~G~~CeC 485 (741)
.|..+|+|.-+ .|.|.+||.|..||-
T Consensus 126 ~C~~~g~C~~~~~~~~c~C~~g~~G~~Ce~ 155 (162)
T 1g1s_A 126 SCSKQGECLETIGNYTCSCYPGFYGPECEY 155 (162)
T ss_dssp GGGGSEEEEECSSSEEEEECTTEESTTSCE
T ss_pred CCCCCCEEecCCCCceEeCCCCCcCccccc
Confidence 48888999743 699999999999985
No 131
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=64.96 E-value=4.3 Score=34.23 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=36.5
Q ss_pred ccCCCceecC----CCCccCCCCCcee-----cCcccccee---ecCCCC--Cceeeec--C--ceEecCCceecccccc
Q psy12966 507 ECSGRGNCLC----NQKSLDNIVNVII-----SHVIVTTEC---CVLDLN--TVGACVA--S--AIVKTAGLVQRVTVAP 568 (741)
Q Consensus 507 ~Csg~G~C~c----G~C~C~~~~~~~~-----G~~~~~Cec---C~~~~g--G~G~C~c--g--~C~C~~G~~G~~~~~~ 568 (741)
.|. +|+|+. -+|.|+. +|. |.. |+- |..... .+|+|.- | .|.|.+||+|......
T Consensus 12 ~C~-~g~C~n~~g~y~C~C~~---Gy~~~~~~g~~---C~dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~~~~ 84 (86)
T 1lmj_A 12 LCG-RGQCVNTPGDFECKCDE---GYESGFMMMKN---CMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISA 84 (86)
T ss_dssp TTT-TSCEEEETTEEEECCCS---SEEECTTTSSS---EEECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCC
T ss_pred CCC-CCEEECCCCCEEeeCCC---CcCccCCCCCc---cCCcccccCCCCcCCCCEeEcCCCCEEEECcCCcccCCCCCc
Confidence 473 567862 3689954 576 677 875 643321 2478863 3 7999999999655555
Q ss_pred C
Q psy12966 569 L 569 (741)
Q Consensus 569 C 569 (741)
|
T Consensus 85 C 85 (86)
T 1lmj_A 85 C 85 (86)
T ss_dssp C
T ss_pred c
Confidence 5
No 132
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=63.91 E-value=8.5 Score=29.26 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=19.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q psy12966 681 PPHVYILGLVLGVIGAIVLIGLAFLCLWK 709 (741)
Q Consensus 681 p~~~~~~~Ivlgvi~~ivliGl~lLliwK 709 (741)
+..+.|++-|.|-++++++|++++.+.||
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~~~~~~R 36 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALGIGLFMR 36 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeehhHHHHHHHHHHHHHHHHhh
Confidence 45566777666655566666677777785
No 133
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=61.84 E-value=2.4 Score=39.01 Aligned_cols=25 Identities=36% Similarity=0.812 Sum_probs=0.0
Q ss_pred CCCCeEEeC--c--eeeeCCCccCCcccc
Q psy12966 461 CSGFGTFKC--G--LCECDQSHFGRRCEC 485 (741)
Q Consensus 461 Csg~G~c~c--G--~C~C~~G~~G~~CeC 485 (741)
|..+|+|+- | .|.|.+||.|..|+-
T Consensus 50 C~n~g~C~~~~~~y~C~C~~G~~G~~C~~ 78 (134)
T 2vh0_B 50 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 78 (134)
T ss_dssp -----------------------------
T ss_pred CCCcCCcccCCCCEEeeCCCCccCCcccc
Confidence 666677753 2 699999999999874
No 134
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=60.33 E-value=3.9 Score=38.32 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=35.5
Q ss_pred cccCCCceecC----CCCccCCCCCceecCcccccee---ecCCCC--Cceee-ec--C--ceEecCCcee
Q psy12966 506 MECSGRGNCLC----NQKSLDNIVNVIISHVIVTTEC---CVLDLN--TVGAC-VA--S--AIVKTAGLVQ 562 (741)
Q Consensus 506 ~~Csg~G~C~c----G~C~C~~~~~~~~G~~~~~Cec---C~~~~g--G~G~C-~c--g--~C~C~~G~~G 562 (741)
..|.+.|+|+. -.|.|.. +|+|.. |+- |....+ .+ +| .- | .|.|.+||++
T Consensus 54 ~pC~n~g~C~~~~~~y~C~C~~---G~~G~~---C~~~deC~~~~~~C~~-~C~~n~~g~y~C~C~~Gy~l 117 (146)
T 1x7a_L 54 NPCLNGGLCKDDINSYECWCQV---GFEGKN---CELDATCNIKNGRCKQ-FCKTGADSKVLCSCTTGYRL 117 (146)
T ss_dssp CSSCTTCEEEECSSCEEEECCS---SEESTT---TCEECCTTSGGGSCSS-BCCCCSSSCCCCBCCTTEEE
T ss_pred CCCCCCCEeECCCCCEEEecCC---CCcCCc---CCCCccccCCCCCCcC-CCCCCCCCCEEeEcCCCcEe
Confidence 35888889972 2699964 799999 986 754322 23 77 42 2 7999999995
No 135
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=59.61 E-value=3.8 Score=46.59 Aligned_cols=51 Identities=18% Similarity=0.344 Sum_probs=37.5
Q ss_pred cccCCCceec--CCCCccCCCCCceecCcccccee--ecCCC----CCceeee-c-----------CceEecCCcee
Q psy12966 506 MECSGRGNCL--CNQKSLDNIVNVIISHVIVTTEC--CVLDL----NTVGACV-A-----------SAIVKTAGLVQ 562 (741)
Q Consensus 506 ~~Csg~G~C~--cG~C~C~~~~~~~~G~~~~~Cec--C~~~~----gG~G~C~-c-----------g~C~C~~G~~G 562 (741)
..|++.|++. -|+|+|.. ||.+.. +.| |+... .+.+.|. | ..|.|..||.-
T Consensus 250 ~~C~~dG~w~~p~G~C~C~~---G~e~~~---~~C~aC~~g~~k~~~~~~~C~~CP~~S~s~~~Gs~~C~C~ng~~r 320 (536)
T 3fl7_A 250 MHCAVDGEWLVPIGQCLCQA---GYEKVE---DACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFR 320 (536)
T ss_dssp EEECTTSCBCCCBCCCEECT---TEEEET---TEEEECCTTEECCSCCSSCCEECCSSEECCCTTCSSCEECTTCBC
T ss_pred EEEcCCCCEecccCcEeccC---ccccCC---ceeeecCCCCCcccCCCCccccCCCCCCCCCCCccEEEEeccccc
Confidence 5799999995 79999964 676555 555 87642 2677785 5 27999999875
No 136
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=58.84 E-value=4 Score=31.74 Aligned_cols=26 Identities=38% Similarity=0.758 Sum_probs=20.0
Q ss_pred CCCCCCeEEe--C----ceeeeCCCccCCcccc
Q psy12966 459 PNCSGFGTFK--C----GLCECDQSHFGRRCEC 485 (741)
Q Consensus 459 ~~Csg~G~c~--c----G~C~C~~G~~G~~CeC 485 (741)
..|- ||+|. - -.|.|..||.|..||-
T Consensus 18 ~yC~-nG~C~~i~~~~~~~C~C~~gy~G~RCe~ 49 (50)
T 2rnl_A 18 NFCI-HGECKYIEHLEAVTCKCQQEYFGERCGE 49 (50)
T ss_dssp GTCS-SSEEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred CcCC-CCEEEEecCCCCeeEECCCCcccccccc
Confidence 3564 68885 2 2699999999999983
No 137
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=57.43 E-value=14 Score=27.25 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=16.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHH
Q psy12966 683 HVYILGLVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 683 ~~~~~~Ivlgvi~~ivliGl~lLliw 708 (741)
.|-+..|++++++||+ |.+||+.+
T Consensus 9 ~p~i~lII~~vmaGiI--G~IllI~y 32 (40)
T 1afo_A 9 EPEITLIIFGVMAGVI--GTILLISY 32 (40)
T ss_dssp CCHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CchhHHHHHHHHHHHH--HHHHHHHH
Confidence 3568889999998875 44555544
No 138
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=57.09 E-value=11 Score=28.76 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=18.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q psy12966 681 PPHVYILGLVLGVIGAIVLIGLAFLCLWK 709 (741)
Q Consensus 681 p~~~~~~~Ivlgvi~~ivliGl~lLliwK 709 (741)
++.+.|++-|.|=++++++|++++.+.||
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~R 35 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYVR 35 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhh
Confidence 45566777666655566666677777785
No 139
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Probab=56.44 E-value=3.6 Score=38.05 Aligned_cols=27 Identities=37% Similarity=0.812 Sum_probs=22.5
Q ss_pred CCCCCCeEEeCc----eeeeCCCccCCcccc
Q psy12966 459 PNCSGFGTFKCG----LCECDQSHFGRRCEC 485 (741)
Q Consensus 459 ~~Csg~G~c~cG----~C~C~~G~~G~~CeC 485 (741)
.-|..+|.|.-| .|.|.+||.|..||.
T Consensus 125 ~pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce~ 155 (157)
T 1g1t_A 125 TSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155 (157)
T ss_dssp TGGGGSEEEEEETTEEEEEECTTEESTTSCE
T ss_pred CCCCCCCEeecCCCCeeEECCCCccCccccc
Confidence 358888999754 699999999999985
No 140
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=55.02 E-value=23 Score=41.26 Aligned_cols=46 Identities=11% Similarity=0.031 Sum_probs=24.8
Q ss_pred ceEecCCceeccccccCCCCccccCccccCCcccccc----ccccccccccccCCCCCccc
Q psy12966 553 AIVKTAGLVQRVTVAPLMTPVYLLREERCARARESVS----AVCANVLKIAREDIPAGSAR 609 (741)
Q Consensus 553 ~C~C~~G~~G~~~~~~C~~~~~~~~~~~Csg~G~C~c----G~C~~~~~C~~~~~~gy~G~ 609 (741)
.|.|.+||.+ .....|...+.-.....|++ .|.. -+|. | .+||.+.
T Consensus 316 ~C~C~~G~~~-~~~~~C~dideC~~~~~C~~--~C~n~~g~y~C~----C----~~G~~~~ 365 (699)
T 1n7d_A 316 ECLCPDGFQL-VAQRRCEDIDECQDPDTCSQ--LCVNLEGGYKCQ----C----EEGFQLD 365 (699)
T ss_dssp CCCCCSSSCC-CSSSCCCCCCCCSSSSSCTT--TCCBCSSCBCCC----C----CSSCBCC
T ss_pred EEeCCCCeEc-CCCCcccCccccCCCCcccc--ccccCCCCeeee----e----ecccccC
Confidence 7999999996 22233432110000023542 4542 3677 8 7889875
No 141
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=54.48 E-value=32 Score=32.60 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=32.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHhcccCCCCCCCC
Q psy12966 684 VYILGLVLGVIGAIVLIGLAFLCLWKILT------SIHDRREFAKFEKERMLAKWDTKLNSLI 740 (741)
Q Consensus 684 ~~~~~Ivlgvi~~ivliGl~lLliwK~~~------~i~DrrE~~kFekE~~~akw~~~~NPly 740 (741)
+.-|..|+|.++..|.|++++.+..|+++ ++ + +||+.-+.||+... ..|||.
T Consensus 75 ~gewK~v~g~v~~~i~~s~~~f~~~r~~v~~p~P~T~-~-~Ewqeaq~erm~~~---~~nPi~ 132 (147)
T 1v54_D 75 TNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTF-E-EEWVAKQTKRMLDM---KVAPIQ 132 (147)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGG-S-HHHHHHHHHHHHHT---TSSTTT
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCC-C-HHHHHHHHHHHHHc---cCCCCc
Confidence 34555455544445556666666667764 23 2 89998888988765 357773
No 142
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=53.66 E-value=10 Score=31.65 Aligned_cols=55 Identities=22% Similarity=0.486 Sum_probs=33.3
Q ss_pred CCCCCeEEeC--c--eeeeCCCcc--CCcccccCCCCCCcCcccCccCCCCccccCCCceec--C--CCCccCCCCCcee
Q psy12966 460 NCSGFGTFKC--G--LCECDQSHF--GRRCECDAESSQGITSTGCKADANSTMECSGRGNCL--C--NQKSLDNIVNVII 529 (741)
Q Consensus 460 ~Csg~G~c~c--G--~C~C~~G~~--G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~--c--G~C~C~~~~~~~~ 529 (741)
.|. ||+|+- | .|.|.+||. |..|+- . ..|... ..|.+ |+|+ - -+|.|+. +|.
T Consensus 13 ~C~-~g~C~n~~g~y~C~C~~Gy~~~g~~C~d-i--------deC~~~----~~C~~-~~C~n~~g~y~C~C~~---G~~ 74 (82)
T 1emn_A 13 VCK-HGQCINTDGSYRCECPFGYILAGNECVD-T--------DECSVG----NPCGN-GTCKNVIGGFECTCEE---GFE 74 (82)
T ss_dssp SCS-SSEECCCSSCCCEECCTTEEEETTEEEE-C--------CGGGTC----CTTSS-SCEEECSSSEEECCSS---SSC
T ss_pred CcC-CCEEEecCCCEEEECCCCeECCCCccCC-c--------ccccCC----CCCCC-CEeECCCCCEEeECCC---CeE
Confidence 464 578863 2 799999997 888852 1 346421 24653 5775 2 2577853 566
Q ss_pred cCc
Q psy12966 530 SHV 532 (741)
Q Consensus 530 G~~ 532 (741)
|..
T Consensus 75 g~~ 77 (82)
T 1emn_A 75 PGP 77 (82)
T ss_dssp CCS
T ss_pred eCC
Confidence 654
No 143
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=53.14 E-value=7 Score=27.92 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=12.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q psy12966 685 YILGLVLGVIGAIVLIGLAFLC 706 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivliGl~lLl 706 (741)
.+.+|+.|.++++++|++++..
T Consensus 8 aIaGIVvgdi~~t~~i~~~vy~ 29 (33)
T 2l34_A 8 VLAGIVVGDLVLTVLIALAVYF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeEeHHHHHHHHHHHHHHhh
Confidence 4556666666666655555443
No 144
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=52.62 E-value=2.9 Score=44.01 Aligned_cols=15 Identities=20% Similarity=0.089 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHH
Q psy12966 685 YILGLVLGVIGAIVL 699 (741)
Q Consensus 685 ~~~~Ivlgvi~~ivl 699 (741)
++..||+|||+++||
T Consensus 282 ~~~~i~~~vi~~l~l 296 (315)
T 1cd1_A 282 PVGLIVFIVLIMLVV 296 (315)
T ss_dssp ---------------
T ss_pred CcceeehhHHHHHHH
Confidence 355666776554443
No 145
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=51.31 E-value=6.9 Score=34.64 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=23.9
Q ss_pred eCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceec----CCCCccCCCCCceec---Ccccccee---ecCCC
Q psy12966 474 CDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCL----CNQKSLDNIVNVIIS---HVIVTTEC---CVLDL 543 (741)
Q Consensus 474 C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~----cG~C~C~~~~~~~~G---~~~~~Cec---C~~~~ 543 (741)
...||.|..|+- ..|...+ ..|+ ..|+ -..|.|.. +|.| .. |+- |....
T Consensus 18 ~~~~~~~~~Cd~----------neC~~~~---~~C~--~~C~n~~g~y~C~C~~---Gy~g~~g~~---C~dideC~~~~ 76 (107)
T 2w2n_E 18 TENLYFQGAMGT----------NECLDNN---GGCS--YVCNDLKIGYECLCPD---GFQLVAQRR---CEDIDECQDPD 76 (107)
T ss_dssp --CCCCSCCBSC----------CGGGTGG---GGCS--SEEECCSBSCEEECCT---TCEEETTTE---EEC--------
T ss_pred cCCCcCCCCCcC----------ccCcCCC---CCCC--CEeEeCCCCeEEECCC---CccccCCCc---cccccccCCCC
Confidence 346788888843 2354322 1343 2454 24688854 6777 66 875 64211
Q ss_pred CCceeeec--C--ceEecCCceeccccccC
Q psy12966 544 NTVGACVA--S--AIVKTAGLVQRVTVAPL 569 (741)
Q Consensus 544 gG~G~C~c--g--~C~C~~G~~G~~~~~~C 569 (741)
.=.+.|+- | .|.|.+||+|.....+|
T Consensus 77 ~C~~~C~n~~gsy~C~C~~Gy~~~~d~~~C 106 (107)
T 2w2n_E 77 TCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106 (107)
T ss_dssp ------------------------------
T ss_pred CcCCeeecCCCCEEEECCCCceECCCCCcc
Confidence 11256753 2 79999999985444444
No 146
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=51.21 E-value=5.1 Score=31.17 Aligned_cols=26 Identities=35% Similarity=0.733 Sum_probs=19.4
Q ss_pred CCCCCCeEEeC------ceeeeCCCccCCcccc
Q psy12966 459 PNCSGFGTFKC------GLCECDQSHFGRRCEC 485 (741)
Q Consensus 459 ~~Csg~G~c~c------G~C~C~~G~~G~~CeC 485 (741)
..|- ||+|.= -.|.|.+||.|..||-
T Consensus 14 ~yC~-nG~C~~~~~~~~~~C~C~~gy~G~RCe~ 45 (50)
T 3e50_C 14 QFCF-HGTCRFLVQEDKPACVCHSGYVGARCEH 45 (50)
T ss_pred Cccc-CCEEeeccCCCCeEEECCCCCcccCCCc
Confidence 3463 577741 2799999999999984
No 147
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Probab=50.51 E-value=5.2 Score=32.28 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=19.0
Q ss_pred CCCC--eEEeCc----eeeeCCCcc-CCccc
Q psy12966 461 CSGF--GTFKCG----LCECDQSHF-GRRCE 484 (741)
Q Consensus 461 Csg~--G~c~cG----~C~C~~G~~-G~~Ce 484 (741)
|... |+|.-. .|.|.+||. |..|+
T Consensus 19 C~nga~gtC~~~~g~y~C~C~~Gy~~G~~C~ 49 (61)
T 2k2s_B 19 CGPEAAGTCKETNSGYICRCNQGYRISLDGT 49 (61)
T ss_dssp SCSSSCCEEEECSSEEEEECCTTEEEEECSS
T ss_pred CcCCCccccccCCCceEeECCCCCccCCCCC
Confidence 6544 788642 699999999 99996
No 148
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=50.19 E-value=45 Score=30.80 Aligned_cols=83 Identities=12% Similarity=0.221 Sum_probs=56.5
Q ss_pred hHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHh
Q psy12966 228 GFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQ 307 (741)
Q Consensus 228 ~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e 307 (741)
|+.....|+ |.+..+++|++.|++++.- +..|.....+
T Consensus 45 G~~~v~kal--------~~gkaklViiA~D~~~~~~----------------------------------~~~l~~lc~~ 82 (135)
T 2aif_A 45 GANEATKAL--------NRGIAEIVLLAADAEPLEI----------------------------------LLHLPLVCED 82 (135)
T ss_dssp SHHHHHHHH--------HTTCEEEEEEETTCSCHHH----------------------------------HHHHHHHHHH
T ss_pred CHHHHHHHH--------HcCCCeEEEEecCCChHHH----------------------------------HhHHHHHHHh
Confidence 466666666 3467899999999984310 3567777888
Q ss_pred cCccEEEEEecchhhhHHHHhhccc----CceeeeccCCcchHHHHHHHHhhhcc
Q psy12966 308 NSINLIFAVTAEQIGVYERLKTHIE----GSSSGTLTNDSSNVVDLVKDQYNKIS 358 (741)
Q Consensus 308 ~~I~~Ifavt~~~~~~Y~~l~~~i~----gs~vg~L~~dSsNiv~lI~~aY~~i~ 358 (741)
++|..+|.-+. ++|...++ -+.++++..+-|+|.+++.+..++|.
T Consensus 83 ~~IP~~~v~sk------~eLG~a~G~~~~v~~vaI~d~~~s~i~~~~~~~~~~~~ 131 (135)
T 2aif_A 83 KNTPYVFVRSK------VALGRACGVSRPVIAAAITSKDGSSLSSQITELKDQIE 131 (135)
T ss_dssp TTCCEEEESCH------HHHHHHTTCSSCCSEEEEECCTTCTTHHHHHHHHHTTC
T ss_pred cCCcEEEECCH------HHHHHHhCCCCcEEEEEEEcCCcHHHHHHHHHHHHHHH
Confidence 89977665333 34555553 23577888888889988877766654
No 149
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=48.23 E-value=4.8 Score=29.18 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=10.8
Q ss_pred hhhHHHHHHH--HHHHHHHHHHHHH
Q psy12966 686 ILGLVLGVIG--AIVLIGLAFLCLW 708 (741)
Q Consensus 686 ~~~Ivlgvi~--~ivliGl~lLliw 708 (741)
...|+.||++ .+|+|||.+.+.|
T Consensus 7 ~~sIaagVvglll~vii~l~~~~~i 31 (35)
T 1iij_A 7 VTFIIATVVGVLLFLILVVVVGILI 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTHHH
T ss_pred CcEeHHHHHHHHHHHHHHHHhheEE
Confidence 3445555544 3444455544444
No 150
>2ktc_A Potassium channel toxin alpha-KTX 9.4; BTK-2, scorpion toxin, KV1.1, disulfide bond, ionic channel inhibitor, neurotoxin; NMR {Mesobuthus tamulus}
Probab=48.21 E-value=4.6 Score=28.55 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=18.9
Q ss_pred ceeecCCCC---CceeeecCceEecCCc
Q psy12966 536 TECCVLDLN---TVGACVASAIVKTAGL 560 (741)
Q Consensus 536 CecC~~~~g---G~G~C~cg~C~C~~G~ 560 (741)
||-||.+.. -+-+|.-+.|.|++|-
T Consensus 5 CEeCP~HCk~k~A~~tCdn~~C~Cn~~~ 32 (34)
T 2ktc_A 5 CAECPMHCKGKMAKPTCENEVCKCNIGK 32 (34)
T ss_dssp HHHHHHTCCTTCCCEEEETTEEEECTTC
T ss_pred cccChhhhccccccccccCCeEecccCC
Confidence 666776654 4678999999999873
No 151
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Probab=48.18 E-value=5.3 Score=30.95 Aligned_cols=26 Identities=35% Similarity=0.782 Sum_probs=20.2
Q ss_pred CCCCCCeEEe--C----ceeeeCCCccCCcccc
Q psy12966 459 PNCSGFGTFK--C----GLCECDQSHFGRRCEC 485 (741)
Q Consensus 459 ~~Csg~G~c~--c----G~C~C~~G~~G~~CeC 485 (741)
..|-. |+|. - -.|.|.+||+|..||-
T Consensus 14 ~yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe~ 45 (50)
T 1iox_A 14 HYCIK-GRCRFVVAEQTPSCVCDEGYIGARCER 45 (50)
T ss_dssp TSCTT-CCEEEETTTTEEEECCCTTEETTTTCE
T ss_pred CcccC-CEEEeEcCCCCeEEECCCCcccCCCCe
Confidence 46754 8884 1 2699999999999985
No 152
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=48.12 E-value=12 Score=34.53 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=34.5
Q ss_pred cccCCCceecC--C--CCccCCCCCceecCcccccee----ecCC-CCCce---eeec--C---ceEecCCcee
Q psy12966 506 MECSGRGNCLC--N--QKSLDNIVNVIISHVIVTTEC----CVLD-LNTVG---ACVA--S---AIVKTAGLVQ 562 (741)
Q Consensus 506 ~~Csg~G~C~c--G--~C~C~~~~~~~~G~~~~~Cec----C~~~-~gG~G---~C~c--g---~C~C~~G~~G 562 (741)
..|.++|+|+. | .|.|.. +|+|.. |+. |..- ...+| +|.- | .|.|.+||++
T Consensus 53 ~pC~n~g~C~~~~g~y~C~C~~---G~~G~~---C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l 120 (142)
T 2c4f_L 53 SPCQNGGSCKDQLQSYICFCLP---AFEGRN---CETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSL 120 (142)
T ss_dssp CCCCTTCEEEEETTEEEEECCT---TEESTT---SCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEE
T ss_pred CCcCCCCEEeCCCCCEEeeCCC---CccCCc---cccCccccccccCCCCCccCEeECCCCCCEEEECCCCceE
Confidence 45888899973 2 699964 799999 985 3111 11122 7752 3 6999999994
No 153
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=46.71 E-value=48 Score=32.08 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=32.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHhcccCCCCCCCC
Q psy12966 684 VYILGLVLGVIGAIVLIGLAFLCLWKILT------SIHDRREFAKFEKERMLAKWDTKLNSLI 740 (741)
Q Consensus 684 ~~~~~Ivlgvi~~ivliGl~lLliwK~~~------~i~DrrE~~kFekE~~~akw~~~~NPly 740 (741)
+.-|.-|+|.+...|.|++++.+..|.++ ++ + +||+.-+.|++... ..|||.
T Consensus 97 tgEWK~V~ggv~~~i~~s~~~f~~~r~~v~~p~P~T~-~-~Ewqeaq~erml~~---~~NPit 154 (169)
T 2y69_D 97 TNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTF-E-EEWVAKQTKRMLDM---KVAPIQ 154 (169)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGG-S-HHHHHHHHHHHHHT---TSSTTT
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCC-C-HHHHHHHHHHHHHc---CCCCCc
Confidence 34555444444444556666656567764 23 2 89998888988765 357773
No 154
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=46.61 E-value=5.9 Score=39.20 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=14.2
Q ss_pred cccCCCceecC----CCCccCCCCCceecCcccccee-----ecCCCC--Cceeeec--C--ceEecCCcee
Q psy12966 506 MECSGRGNCLC----NQKSLDNIVNVIISHVIVTTEC-----CVLDLN--TVGACVA--S--AIVKTAGLVQ 562 (741)
Q Consensus 506 ~~Csg~G~C~c----G~C~C~~~~~~~~G~~~~~Cec-----C~~~~g--G~G~C~c--g--~C~C~~G~~G 562 (741)
..|.+.|+|+. ..|.|.. +|+|.. |+. |....+ .+ .|.- | .|.|.+||++
T Consensus 48 ~pC~ngg~C~n~~g~y~C~C~~---Gf~G~~---Ce~~i~deC~~~~~~C~~-~C~n~~gsy~C~C~~Gy~l 112 (195)
T 1nfu_B 48 SPCQNQGKCKDGLGEYTCTCLE---GFEGKN---CELFTRKLCSLDNGDCDQ-FCHEEQNSVVCSCARGYTL 112 (195)
T ss_dssp ---------------------------------------CCGGGTGGGGCSS-EEEEETTEEEEECCTTEEE
T ss_pred CCCCCCCEeECCCCCeeEeCCC---Cceecc---ccccccccccCCCCCCCC-EeECCCCCeEEECCCCcee
Confidence 35877888863 3699964 799999 874 543221 23 7753 2 6999999994
No 155
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=46.04 E-value=25 Score=28.99 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=19.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy12966 684 VYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRR 718 (741)
Q Consensus 684 ~~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~Drr 718 (741)
|.++++++|+++.++++||.+++.-|. .|-||
T Consensus 8 p~~LivlGg~~~lll~~glcI~ccvkc---rhRrr 39 (70)
T 2klu_A 8 SMALIVLGGVAGLLLFIGLGIFFSVRS---RHRRR 39 (70)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHS---SCCSS
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhHH---HHHHH
Confidence 445545555677777888888754443 35444
No 156
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=43.67 E-value=34 Score=25.04 Aligned_cols=26 Identities=15% Similarity=-0.014 Sum_probs=18.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHH
Q psy12966 684 VYILGLVLGVIGAIVLIGLAFLCLWK 709 (741)
Q Consensus 684 ~~~~~Ivlgvi~~ivliGl~lLliwK 709 (741)
..--+|+..|++.++.+.|+++++|-
T Consensus 8 ls~GaIAGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 8 LTGGEIVAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceeeeehHHHHHHHHHHHHHHH
Confidence 34556766677777778888877773
No 157
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=42.88 E-value=24 Score=23.50 Aligned_cols=18 Identities=44% Similarity=0.802 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhH
Q psy12966 695 GAIVLIGLAFLCLWKILTSIHDR 717 (741)
Q Consensus 695 ~~ivliGl~lLliwK~~~~i~Dr 717 (741)
++--+||++-|++| |-||
T Consensus 7 ~aa~iiGilHLiLw-----Ildr 24 (26)
T 3bkd_A 7 VAASIMGILHLILW-----ILDR 24 (26)
T ss_dssp HHHHHHHHHHHHHH-----HHHH
T ss_pred hHHHHHHHHHHHHH-----HHhh
Confidence 34456788999999 7776
No 158
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=42.80 E-value=27 Score=25.39 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy12966 700 IGLAFLCLWKILTSIHDRREFAKFEKER 727 (741)
Q Consensus 700 iGl~lLliwK~~~~i~DrrE~~kFekE~ 727 (741)
..++.+++|- .=-+||+|..|+|
T Consensus 14 alIiaIVVWt-----iv~ieYrk~~kQ~ 36 (36)
T 1pi7_A 14 AIIIAIVVWS-----IVIIEGRGGKKKK 36 (36)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHhcC
Confidence 3344455673 3358998887754
No 159
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Probab=42.32 E-value=12 Score=29.16 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=18.7
Q ss_pred cccCCCceec--CC----CCccCCCCCceecCcccccee
Q psy12966 506 MECSGRGNCL--CN----QKSLDNIVNVIISHVIVTTEC 538 (741)
Q Consensus 506 ~~Csg~G~C~--cG----~C~C~~~~~~~~G~~~~~Cec 538 (741)
..|.+.|+|. .+ .|.|.. +|+|+. ||.
T Consensus 12 ~pC~nGG~C~~~~~~~~~~C~C~~---GytG~~---Ce~ 44 (53)
T 1nql_B 12 GYCLHDGVCMYIEALDKYACNCVV---GYIGER---CQY 44 (53)
T ss_dssp CEECTTCEEEEETTTTEEEEEECT---TEESTT---SCE
T ss_pred CCCCCCeEEeeecCCCCEEEecCC---CCcCCC---CCc
Confidence 4688888886 32 577754 688888 764
No 160
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=42.20 E-value=28 Score=24.81 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy12966 696 AIVLIGLAFLCLWKILTSIHDRREFAK 722 (741)
Q Consensus 696 ~ivliGl~lLliwK~~~~i~DrrE~~k 722 (741)
+--+||++=|++| |-||--|.|
T Consensus 12 aA~IigiLHlilW-----ildrLff~k 33 (35)
T 2ljb_A 12 AASIIGILHFIAW-----TIGHLNQIK 33 (35)
T ss_dssp HHHHHHHHHHHHH-----HHHTHHHHH
T ss_pred HHHHHHHHHHHHH-----HhhhhHhhh
Confidence 3346788889999 889877765
No 161
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=42.10 E-value=70 Score=29.54 Aligned_cols=82 Identities=13% Similarity=0.259 Sum_probs=51.9
Q ss_pred hHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHh
Q psy12966 228 GFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQ 307 (741)
Q Consensus 228 ~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e 307 (741)
|+.....|+ |.+..+++|++.|+++.. .+..|.....+
T Consensus 36 G~~~v~kai--------~~gkakLViiA~D~~p~~----------------------------------~~~~l~~lc~~ 73 (134)
T 2ale_A 36 GANEATKTL--------NRGISEFIIMAADCEPIE----------------------------------ILLHLPLLCED 73 (134)
T ss_dssp SHHHHHHHH--------HHTCEEEEEEETTCSSGG----------------------------------GGTHHHHHHHH
T ss_pred CchHHHHHH--------HhCCCeEEEEeCCCCHHH----------------------------------HHHHHHHHHHh
Confidence 455556665 346789999999998531 03446677788
Q ss_pred cCccEEEEEecchhhhHHHHhhccc----CceeeeccCCcchHHHHH---HHHhhhc
Q psy12966 308 NSINLIFAVTAEQIGVYERLKTHIE----GSSSGTLTNDSSNVVDLV---KDQYNKI 357 (741)
Q Consensus 308 ~~I~~Ifavt~~~~~~Y~~l~~~i~----gs~vg~L~~dSsNiv~lI---~~aY~~i 357 (741)
++|..+|.-++ .+|...++ -+.++++.++.+.+.+++ ++.|+.+
T Consensus 74 ~~VP~~~v~sk------~eLG~a~G~~~~~s~vaI~d~~~s~~~~l~~~i~~~~~~~ 124 (134)
T 2ale_A 74 KNVPYVFVPSR------VALGRACGVSRPVIAASITTNDASAIKTQIYAVKDKIETL 124 (134)
T ss_dssp HTCCEEEESCH------HHHHHHTTCSSCCSEEEEECCTTCTTHHHHHHHHHHHHHH
T ss_pred cCCCEEEECCH------HHHHHHhCCCCCeEEEEEEcCChHHHHHHHHHHHHHHHHh
Confidence 89887776332 24444443 257788888777766554 4555544
No 162
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=41.55 E-value=27 Score=22.70 Aligned_cols=17 Identities=47% Similarity=0.823 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH
Q psy12966 696 AIVLIGLAFLCLWKILTSIHDR 717 (741)
Q Consensus 696 ~ivliGl~lLliwK~~~~i~Dr 717 (741)
+--+||++=|++| |-||
T Consensus 5 aa~iigIlHLiLw-----IlDr 21 (23)
T 3lbw_A 5 AASIIAILHLILW-----ILDR 21 (26)
T ss_dssp HHHHHHHHHHHHH-----HHHH
T ss_pred hHHHHHHHHHHHH-----HHhh
Confidence 4456889999999 7777
No 163
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=40.10 E-value=8.8 Score=35.17 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=14.0
Q ss_pred ccCCCceecC----CCCccCCCCCceecCcccccee-----ecCCCCC-ceeeec--C--ceEecCCcee
Q psy12966 507 ECSGRGNCLC----NQKSLDNIVNVIISHVIVTTEC-----CVLDLNT-VGACVA--S--AIVKTAGLVQ 562 (741)
Q Consensus 507 ~Csg~G~C~c----G~C~C~~~~~~~~G~~~~~Cec-----C~~~~gG-~G~C~c--g--~C~C~~G~~G 562 (741)
.|.++|+|+. ..|.|+. +|+|.. |+. |....++ +.+|.- | .|.|.+||++
T Consensus 49 pC~n~g~C~~~~~~y~C~C~~---G~~G~~---C~~~i~d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l 112 (134)
T 2vh0_B 49 PCQNQGKCKDGLGEYTCTCLE---GFEGKN---CELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTL 112 (134)
T ss_dssp --------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEE
T ss_pred CCCCcCCcccCCCCEEeeCCC---CccCCc---cccCCCCccccCCCCCCCEeECCCCCEEEECCCCcEE
Confidence 4777788862 3799964 789999 874 5432111 227753 2 6999999994
No 164
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Probab=39.14 E-value=12 Score=35.14 Aligned_cols=28 Identities=32% Similarity=0.711 Sum_probs=22.1
Q ss_pred CCCCCeEEeCc-------eeeeCCCccCCcccccC
Q psy12966 460 NCSGFGTFKCG-------LCECDQSHFGRRCECDA 487 (741)
Q Consensus 460 ~Csg~G~c~cG-------~C~C~~G~~G~~CeC~~ 487 (741)
-|.+.|+|... .|.|.+||.|..|+.+.
T Consensus 14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~ 48 (145)
T 2i9a_A 14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK 48 (145)
T ss_dssp CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEES
T ss_pred CCCCCCCcCCCccccCCccccCCCCCCCCceeccc
Confidence 36667888543 69999999999999754
No 165
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=38.93 E-value=31 Score=24.78 Aligned_cols=24 Identities=21% Similarity=0.564 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy12966 691 LGVIGAIVLIGLAFLCLWKILTSI 714 (741)
Q Consensus 691 lgvi~~ivliGl~lLliwK~~~~i 714 (741)
-|.+++++++|+.+++.|-.+..+
T Consensus 6 ~GTl~~V~ilg~~I~i~W~~vf~l 29 (34)
T 3s8f_C 6 KGALAVILVLTLTILVFWLGVYAV 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceehHHHHHHHHHHHHHHHHHee
Confidence 367788899999999999655433
No 166
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}
Probab=38.38 E-value=7.7 Score=36.13 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=21.2
Q ss_pred cccCCCceec----CCCCccCCCCCceecCcccccee---ecC
Q psy12966 506 MECSGRGNCL----CNQKSLDNIVNVIISHVIVTTEC---CVL 541 (741)
Q Consensus 506 ~~Csg~G~C~----cG~C~C~~~~~~~~G~~~~~Cec---C~~ 541 (741)
..|+++|.|+ -..|.|.. +|+|.. ||. ||+
T Consensus 125 ~~C~~~g~C~~~~~~~~c~C~~---g~~g~~---C~~~~~c~~ 161 (164)
T 3cfw_A 125 WSCSGHGECVEIINNYTCNCDV---GYYGPQ---CQFVQVDPR 161 (164)
T ss_dssp TSSCSSEEEEEETTEEEEEECT---TCBSSS---SCBC-----
T ss_pred CcCCCCCeecccCCCceeeeCC---Cccccc---ccccccCcc
Confidence 4688899997 35788854 688998 986 764
No 167
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1
Probab=38.20 E-value=11 Score=32.25 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=19.7
Q ss_pred CCCCCCeEEe--C----ceeeeCCCccCCcccc
Q psy12966 459 PNCSGFGTFK--C----GLCECDQSHFGRRCEC 485 (741)
Q Consensus 459 ~~Csg~G~c~--c----G~C~C~~G~~G~~CeC 485 (741)
..| -||+|. - -.|.|.+||+|..||-
T Consensus 46 ~yC-lnG~C~~i~~~~~~~C~C~~GYtG~RCE~ 77 (79)
T 1xdt_R 46 DFC-IHGECKYVKELRAPSCICHPGYHGERCHG 77 (79)
T ss_dssp TCC-SSEEECCBGGGTBCCEEECTTEESTTCCE
T ss_pred CcC-CCCEeeeecCCCCeEEEcCCCcccccccc
Confidence 457 368883 1 2699999999999984
No 168
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=37.81 E-value=25 Score=26.70 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=12.5
Q ss_pred CCCCchhhHHHHHHHHHHHH
Q psy12966 681 PPHVYILGLVLGVIGAIVLI 700 (741)
Q Consensus 681 p~~~~~~~Ivlgvi~~ivli 700 (741)
++.+.++++|.|++..+++.
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~ 28 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLG 28 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHH
Confidence 35566777777777754443
No 169
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=37.53 E-value=29 Score=41.20 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=8.9
Q ss_pred ceEecCCcee
Q psy12966 553 AIVKTAGLVQ 562 (741)
Q Consensus 553 ~C~C~~G~~G 562 (741)
.|.|.+||.+
T Consensus 334 ~C~C~~Gy~l 343 (791)
T 3m0c_C 334 ECLCPDGFQL 343 (791)
T ss_dssp EEECCTTCEE
T ss_pred ccCCCCCCcc
Confidence 7999999975
No 170
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=37.38 E-value=62 Score=37.55 Aligned_cols=49 Identities=10% Similarity=-0.012 Sum_probs=29.7
Q ss_pred CCCccCCCCCcee---cCcccccee---ecCCCCCceeeec--C--ceEecCCceeccccccCCC
Q psy12966 517 NQKSLDNIVNVII---SHVIVTTEC---CVLDLNTVGACVA--S--AIVKTAGLVQRVTVAPLMT 571 (741)
Q Consensus 517 G~C~C~~~~~~~~---G~~~~~Cec---C~~~~gG~G~C~c--g--~C~C~~G~~G~~~~~~C~~ 571 (741)
..|.|.. +|. |.. |+- |.....=...|.- | .|.|.+||.+.....+|..
T Consensus 315 ~~C~C~~---G~~~~~~~~---C~dideC~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~~~~C~~ 373 (699)
T 1n7d_A 315 YECLCPD---GFQLVAQRR---CEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA 373 (699)
T ss_dssp CCCCCCS---SSCCCSSSC---CCCCCCCSSSSSCTTTCCBCSSCBCCCCCSSCBCCSSCCCCBC
T ss_pred cEEeCCC---CeEcCCCCc---ccCccccCCCCccccccccCCCCeeeeeecccccCCCCCcccc
Confidence 4688854 566 666 865 6422111235542 2 7999999999555566753
No 171
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}
Probab=36.86 E-value=14 Score=41.69 Aligned_cols=29 Identities=28% Similarity=0.559 Sum_probs=25.3
Q ss_pred CCCCCCeEEe-CceeeeCCCccCCcccccC
Q psy12966 459 PNCSGFGTFK-CGLCECDQSHFGRRCECDA 487 (741)
Q Consensus 459 ~~Csg~G~c~-cG~C~C~~G~~G~~CeC~~ 487 (741)
..|++||.|- -+.|.|++||..++|+-+.
T Consensus 454 ~~C~~~GVCNn~~~CHC~~GwaPP~C~~~~ 483 (510)
T 3g5c_A 454 TICSGNGVCSNELKCVCNRHWIGSDCNTYF 483 (510)
T ss_dssp CSGGGTEEEBTTSCEEECTTEESTTSCEEC
T ss_pred cccCCCCeeCCCCCcCCCCCCCCCCCCCCC
Confidence 4699999997 5789999999999999653
No 172
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=34.84 E-value=14 Score=27.26 Aligned_cols=25 Identities=8% Similarity=-0.080 Sum_probs=16.7
Q ss_pred ccCCCceec--C----CCCccCCCCCceecCccccce
Q psy12966 507 ECSGRGNCL--C----NQKSLDNIVNVIISHVIVTTE 537 (741)
Q Consensus 507 ~Csg~G~C~--c----G~C~C~~~~~~~~G~~~~~Ce 537 (741)
.|.+.|+|+ . ..|.|.. +|+|.. ||
T Consensus 10 pC~ngg~C~~~~~~~~~~C~C~~---G~~G~~---Ce 40 (45)
T 1a3p_A 10 YCLNGGVXMHIESLDSYTCNCVI---GYSGDR---CQ 40 (45)
T ss_dssp CCSSSCEEEECTTTSSEEEECCT---TEETTT---TC
T ss_pred CCCCCCEEEeecCCCCEEEEcCC---CCcCCc---CC
Confidence 577778885 1 2477753 678877 76
No 173
>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1
Probab=34.24 E-value=14 Score=24.96 Aligned_cols=15 Identities=40% Similarity=0.860 Sum_probs=10.7
Q ss_pred ccCCCceecCCC-Ccc
Q psy12966 507 ECSGRGNCLCNQ-KSL 521 (741)
Q Consensus 507 ~Csg~G~C~cG~-C~C 521 (741)
.||+-|+|.||. |.|
T Consensus 4 gCs~tgtC~Cg~~CsC 19 (26)
T 1t2y_A 4 GCSGASSCNCGSGCSC 19 (26)
T ss_dssp SCSSTTTCCCSSSCCS
T ss_pred ccCCCccccCCCCccc
Confidence 477777777776 666
No 174
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=33.75 E-value=35 Score=35.21 Aligned_cols=57 Identities=12% Similarity=0.111 Sum_probs=39.4
Q ss_pred cccCCCceecC----CCCccCCCCCceecCcccccee----ecCCC-C--Cceeeec----CceEecCCceeccccccC
Q psy12966 506 MECSGRGNCLC----NQKSLDNIVNVIISHVIVTTEC----CVLDL-N--TVGACVA----SAIVKTAGLVQRVTVAPL 569 (741)
Q Consensus 506 ~~Csg~G~C~c----G~C~C~~~~~~~~G~~~~~Cec----C~~~~-g--G~G~C~c----g~C~C~~G~~G~~~~~~C 569 (741)
..|.++|+|.. -.|.|.. +|.|+. ||. |.... + .+ .|.- -.|.|.+||+|......|
T Consensus 11 ~pC~~~g~C~~~~~~~~C~C~~---g~~g~~---C~~~~~eC~~~~~~~C~~-~C~~~~g~~~C~C~~g~~~~~~~~~C 82 (317)
T 3h5c_B 11 QPCLHNGSCQDSIWGYTCTCSP---GYEGSN---CELAKNECHPERTDGCQH-FCLPGQESYTCSCAQGYRLGEDHKQC 82 (317)
T ss_dssp CCCTTTCCCCCCSSSCCCCCSS---SCCSSS---SCCCSSSCCTTCTTSCSS-EEECCSSSCEEECCTTEECCTTSSCC
T ss_pred CCCCCCCEeECCCCCeEEECCC---CCcCCc---cccCcccCCCCCCCCCcC-ccccCCCeeEEecccccccccccccc
Confidence 34777788863 4699954 789999 983 86421 2 34 7763 279999999996555555
No 175
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=32.35 E-value=82 Score=27.82 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=45.3
Q ss_pred hHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHh
Q psy12966 228 GFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQ 307 (741)
Q Consensus 228 ~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e 307 (741)
|+.....|+ |.+..+++|++.|++.+. +..|.....+
T Consensus 25 G~~~v~kai--------~~gka~lViiA~D~~~~~-----------------------------------~~~l~~~c~~ 61 (110)
T 3cpq_A 25 GSKRTIKFV--------KHGEGKLVVLAGNIPKDL-----------------------------------EEDVKYYAKL 61 (110)
T ss_dssp SHHHHHHHH--------HTTCCSEEEECTTCBHHH-----------------------------------HHHHHHHHHH
T ss_pred CHHHHHHHH--------HcCCceEEEEeCCCCHHH-----------------------------------HHHHHHHHHH
Confidence 455556665 345678999999997332 4556666677
Q ss_pred cCccEEEEEecchhhhHHHHhhcccC----ceeeeccCCcchHHHHHH
Q psy12966 308 NSINLIFAVTAEQIGVYERLKTHIEG----SSSGTLTNDSSNVVDLVK 351 (741)
Q Consensus 308 ~~I~~Ifavt~~~~~~Y~~l~~~i~g----s~vg~L~~dSsNiv~lI~ 351 (741)
++|..+..+ ... .+|...++. +.++.+...-++|++++.
T Consensus 62 ~~Vp~~~~~-~sk----~eLG~a~G~~~~~s~vaI~d~g~a~i~~~~~ 104 (110)
T 3cpq_A 62 SNIPVYQHK-ITS----LELGAVCGKPFPVAALLVLDEGLSNIMELVE 104 (110)
T ss_dssp TTCCEEECC-SCH----HHHHHHTTCSSCCSEEEEEECTTCCHHHHHH
T ss_pred cCCCEEEEc-CCH----HHHHHHhCCccceEEEEEecCCHHHHHHHhh
Confidence 787544332 222 345555542 356777655455887765
No 176
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=31.92 E-value=29 Score=25.65 Aligned_cols=18 Identities=44% Similarity=0.711 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHH
Q psy12966 697 IVLIGLAFLCLWKILTSIHDRRE 719 (741)
Q Consensus 697 ivliGl~lLliwK~~~~i~DrrE 719 (741)
--+||++-|++| |-||--
T Consensus 13 a~iiGIlHLiLw-----ildRlf 30 (43)
T 2kih_A 13 ANIIGILHLILW-----ILDRLF 30 (43)
T ss_dssp HHHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHH
Confidence 345688888889 777753
No 177
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=31.28 E-value=35 Score=24.87 Aligned_cols=22 Identities=27% Similarity=0.618 Sum_probs=14.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHH
Q psy12966 684 VYILGLVLGVIGAIVLIGLAFLC 706 (741)
Q Consensus 684 ~~~~~Ivlgvi~~ivliGl~lLl 706 (741)
|-..+||+|.| -|.|+||.+..
T Consensus 4 ~lL~GIVlGli-pvtlaGLfv~A 25 (37)
T 1q90_G 4 PLLCGIVLGLV-PVTIAGLFVTA 25 (37)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHH
T ss_pred hhhhhHHHhhH-HHHHHHHHHHH
Confidence 34567888866 56777876644
No 178
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=31.23 E-value=67 Score=22.82 Aligned_cols=25 Identities=32% Similarity=0.226 Sum_probs=20.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Q psy12966 684 VYILGLVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 684 ~~~~~Ivlgvi~~ivliGl~lLliw 708 (741)
.+..+|++-|++.|+.+.++.+++|
T Consensus 4 L~~gaIaGIVvgdi~~t~~i~~~vy 28 (33)
T 2l34_A 4 VSPGVLAGIVVGDLVLTVLIALAVY 28 (33)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcceEEeEeHHHHHHHHHHHHHHh
Confidence 4567788888888889988888877
No 179
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Probab=31.17 E-value=14 Score=28.35 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=17.3
Q ss_pred ccCCCceecC----C----CCccCCCCCceecCcccccee
Q psy12966 507 ECSGRGNCLC----N----QKSLDNIVNVIISHVIVTTEC 538 (741)
Q Consensus 507 ~Csg~G~C~c----G----~C~C~~~~~~~~G~~~~~Cec 538 (741)
.|.+.|+|+- + .|.|.. +|+|+. ||.
T Consensus 15 pC~NGGtC~~~~~~~~~~y~C~C~~---Gf~G~~---Ce~ 48 (52)
T 3ca7_A 15 YCLNDAHCFAVKIADLPVYSCECAI---GFMGQR---CEY 48 (52)
T ss_dssp TSCTTCEEEEEEETTEEEEEEECCT---TEESTT---SCE
T ss_pred cCCCCCEEecCccCCCCCEEEECCC---CCcCCC---Ccc
Confidence 4666677762 1 688854 688888 763
No 180
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=30.99 E-value=17 Score=41.40 Aligned_cols=26 Identities=27% Similarity=0.650 Sum_probs=22.2
Q ss_pred CCCCeEEeC-c----eeeeC-CCccCCccccc
Q psy12966 461 CSGFGTFKC-G----LCECD-QSHFGRRCECD 486 (741)
Q Consensus 461 Csg~G~c~c-G----~C~C~-~G~~G~~CeC~ 486 (741)
|...|+|.- + .|.|. +||.|..||-+
T Consensus 10 C~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~ 41 (553)
T 1q4g_A 10 CQHQGICVRFGLDRYQCDCTRTGYSGPNCTIP 41 (553)
T ss_dssp CCTTCEEEEETTTEEEEECTTSSEETTTTCEE
T ss_pred CCCCCCcCCCCCCceEeeCCCCCcCCCCCCCC
Confidence 877889976 4 69999 99999999864
No 181
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A
Probab=30.79 E-value=21 Score=32.28 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=15.0
Q ss_pred cCCCceecCC-------CCccCCCCCceecCcccccee
Q psy12966 508 CSGRGNCLCN-------QKSLDNIVNVIISHVIVTTEC 538 (741)
Q Consensus 508 Csg~G~C~cG-------~C~C~~~~~~~~G~~~~~Cec 538 (741)
|.+.|+|+.+ .|.|+. +|+|++ ||.
T Consensus 3 C~nggtC~~~~~~~~~~~C~Cp~---g~~G~~---Ce~ 34 (122)
T 2fd6_A 3 CLNGGTCVSNKYFSNIHWCNCPK---KFGGQH---CEI 34 (122)
T ss_dssp CCSSCEEEECTTTTTCEEEECCT---TEESTT---SCE
T ss_pred CCCcCCcCCCcccCCCCCccCCC---CCCCcc---ccc
Confidence 5666666532 466643 577777 764
No 182
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=29.37 E-value=1.4e+02 Score=26.46 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=34.3
Q ss_pred cceeEEEEEeeC-------ccEEEEEEEeccCCCc--ceeEEeecCCCChHHhHHHHHHHHHHHH
Q psy12966 95 SPQHVSLKLRIN-------EAYRMVVDYAQAEDYP--VDLYYLMDLSNSMRDDKDRLSALGDQLS 150 (741)
Q Consensus 95 ~Pq~v~~~LR~G-------~~~~~~~~~~~~~~~p--vDly~LmDlS~SM~ddl~~lk~l~~~l~ 150 (741)
.|..++++|+|. ..+.|.+.|+-+.+|| .=.+++....+=-..++..|++....++
T Consensus 38 ~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~~~L~~~~~~~L~~~L~~~~ 102 (128)
T 2day_A 38 SPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPRGLSDEQIHTILQVLGHVA 102 (128)
T ss_dssp CCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 467899999863 1468888898889998 2223444422222455666665554444
No 183
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Probab=27.81 E-value=19 Score=32.06 Aligned_cols=74 Identities=12% Similarity=-0.014 Sum_probs=39.0
Q ss_pred CCccCCCCCceecCcccccee--ecCCCC-C--ceeeec---CceEecCCceeccccccCCCCcc-ccCccccCCccccc
Q psy12966 518 QKSLDNIVNVIISHVIVTTEC--CVLDLN-T--VGACVA---SAIVKTAGLVQRVTVAPLMTPVY-LLREERCARARESV 588 (741)
Q Consensus 518 ~C~C~~~~~~~~G~~~~~Cec--C~~~~g-G--~G~C~c---g~C~C~~G~~G~~~~~~C~~~~~-~~~~~~Csg~G~C~ 588 (741)
+|.|.. +|.|.. ++. |..... + .+.|.- -.|.|.+||++.. -..|...+. ... ..| .++|+
T Consensus 25 ~C~C~~---Gy~g~~---~~~~~C~~~C~~~~C~~~C~~~~~y~C~C~~Gy~~~~-g~~C~dideC~~~-~~C--~~~C~ 94 (118)
T 1dx5_I 25 LCVCAE---GFAPIP---HEPHRCQMFCNQTACPADCDPNTQASCECPEGYILDD-GFICTDIDECENG-GFC--SGVCH 94 (118)
T ss_dssp EEECCT---TEEEET---TEEEEEEECCCSSEEECEECTTSTTCEECCTTEEEET-TTEEEECCHHHHC-SSC--SSEEE
T ss_pred EeECCC---CccccC---CCCCccccccCCCCCCCcccCCCCeEeECCCCccCCC-CCccccccccCCC-CCC--cCeEE
Confidence 578854 688875 433 322111 1 245542 2799999999421 122311110 000 246 46675
Q ss_pred c----ccccccccccccCCCCCccc
Q psy12966 589 S----AVCANVLKIAREDIPAGSAR 609 (741)
Q Consensus 589 c----G~C~~~~~C~~~~~~gy~G~ 609 (741)
. -+|. | .+||.|.
T Consensus 95 n~~g~y~C~----C----~~G~~g~ 111 (118)
T 1dx5_I 95 NLPGTFECI----C----GPDSALA 111 (118)
T ss_dssp ECSSSEEEE----E----CSSSSCE
T ss_pred eCCCCEEEE----C----CCCCccC
Confidence 2 3688 8 7889875
No 184
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=27.40 E-value=27 Score=26.71 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=16.0
Q ss_pred ccCCCceec--C----CCCccCCCCCceecCcccccee
Q psy12966 507 ECSGRGNCL--C----NQKSLDNIVNVIISHVIVTTEC 538 (741)
Q Consensus 507 ~Csg~G~C~--c----G~C~C~~~~~~~~G~~~~~Cec 538 (741)
.|.+.|+|+ . -.|.|+. +|+|.. ||.
T Consensus 13 pC~ngg~C~~~~~~~~~~C~C~~---G~~G~~---Ce~ 44 (53)
T 1egf_A 13 YCLNGGVCMHIESLDSYTCNCVI---GYSGDR---CQT 44 (53)
T ss_dssp SSCSSCEEEEESSSSCEEEECCT---TCCSSS---SCC
T ss_pred cCCCCcEEEeeCCCCCEEEECCC---CCcCCc---CCc
Confidence 577778876 2 2366643 567777 653
No 185
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=26.99 E-value=21 Score=31.45 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=9.3
Q ss_pred ceEecCCcee
Q psy12966 553 AIVKTAGLVQ 562 (741)
Q Consensus 553 ~C~C~~G~~G 562 (741)
.|.|.+||+|
T Consensus 51 ~C~C~~Gy~g 60 (107)
T 2w2n_E 51 ECLCPDGFQL 60 (107)
T ss_dssp EEECCTTCEE
T ss_pred EEECCCCccc
Confidence 7999999998
No 186
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=26.42 E-value=67 Score=29.43 Aligned_cols=34 Identities=15% Similarity=0.024 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy12966 694 IGAIVLIGLAFLCLWKILTSIHDRREFAKFEKER 727 (741)
Q Consensus 694 i~~ivliGl~lLliwK~~~~i~DrrE~~kFekE~ 727 (741)
+..|++||||..+++-.+..+.+|.+.++...+.
T Consensus 7 livi~Ii~il~~ia~p~~~~~~~~~~~~~~~~~~ 40 (144)
T 1oqw_A 7 MIVVAIIGILAAIAIPQYQNYVARSEGASALASV 40 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777776677777777666655554
No 187
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=26.36 E-value=22 Score=28.20 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=16.0
Q ss_pred cccCCCceecC---------CCCccCCCCCceecCcccccee
Q psy12966 506 MECSGRGNCLC---------NQKSLDNIVNVIISHVIVTTEC 538 (741)
Q Consensus 506 ~~Csg~G~C~c---------G~C~C~~~~~~~~G~~~~~Cec 538 (741)
..|.+.|+|+- ..|.|+. +|+|.. ||.
T Consensus 12 ~pC~ngG~C~~~~~~~~~~~y~C~C~~---Gf~G~~---Ce~ 47 (63)
T 1hae_A 12 TFCVNGGECFMVKDLSNPSRYLCKCQP---GFTGAR---CTE 47 (63)
T ss_dssp TTSCTTCEEEEEESSSSSCCEEEECCT---TEESTT---SCE
T ss_pred CcCCCCcEEecCCccCCCCCEEEECCC---CCcCCc---cCc
Confidence 35777777762 1366643 566666 653
No 188
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=26.15 E-value=1.8e+02 Score=25.83 Aligned_cols=83 Identities=8% Similarity=0.233 Sum_probs=50.9
Q ss_pred hHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHh
Q psy12966 228 GFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQ 307 (741)
Q Consensus 228 ~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e 307 (741)
|+.....|+ |.+..+++|++.|+++-. - +..|.....+
T Consensus 31 G~~~v~kal--------~~gka~lViiA~D~~~~~--------------~--------------------~~~l~~lc~~ 68 (119)
T 1rlg_A 31 GTNETTKAV--------ERGLAKLVYIAEDVDPPE--------------I--------------------VAHLPLLCEE 68 (119)
T ss_dssp SHHHHHHHH--------TTTCCSEEEEESCCSCST--------------T--------------------TTHHHHHHHH
T ss_pred CHHHHHHHH--------HcCCCcEEEEeCCCChHH--------------H--------------------HHHHHHHHHH
Confidence 355555555 345678999999997421 0 2345556667
Q ss_pred cCccEEEEEecchhhhHHHHhhcc----cCceeeecc-CCcchHHHHHHHHhhhcc
Q psy12966 308 NSINLIFAVTAEQIGVYERLKTHI----EGSSSGTLT-NDSSNVVDLVKDQYNKIS 358 (741)
Q Consensus 308 ~~I~~Ifavt~~~~~~Y~~l~~~i----~gs~vg~L~-~dSsNiv~lI~~aY~~i~ 358 (741)
++|..+|.-++. +|...+ +-+.++.+. .++..+++.|.+..+++.
T Consensus 69 ~~Vp~~~~~sk~------eLG~a~G~~~~~~~vaI~d~g~a~~~~~~l~~~~~~l~ 118 (119)
T 1rlg_A 69 KNVPYIYVKSKN------DLGRAVGIEVPCASAAIINEGELRKELGSLVEKIKGLQ 118 (119)
T ss_dssp HTCCEEEESCHH------HHHHHTTCSSCCSEEEEEECGGGHHHHHHHHHHHHTTT
T ss_pred cCCCEEEeCCHH------HHHHHhCCCCCeEEEEEecCchHHHHHHHHHHHHHHhh
Confidence 888766554433 344444 345666664 456668888888877764
No 189
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=25.72 E-value=88 Score=29.04 Aligned_cols=35 Identities=11% Similarity=-0.011 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy12966 694 IGAIVLIGLAFLCLWKILTSIHDRREFAKFEKERM 728 (741)
Q Consensus 694 i~~ivliGl~lLliwK~~~~i~DrrE~~kFekE~~ 728 (741)
++.|++||||..+++-.+....+|.+.+....+.+
T Consensus 7 lvviaIigiLaaia~p~~~~~~~~~~~~~~~~~~~ 41 (151)
T 3sok_A 7 MIVVAIIGILAAFAIPAYNDYIARSQAAEGLTLAD 41 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777777777777777777776666555543
No 190
>1acw_A Natural scorpion peptide P01; scorpion toxin, potassium channel, neurotoxin, toxin; NMR {Androctonus mauretanicus mauretanicus} SCOP: g.3.7.2 PDB: 1wm7_A
Probab=25.47 E-value=8.3 Score=26.45 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=15.2
Q ss_pred ceeecCCCC---CceeeecCceEecC
Q psy12966 536 TECCVLDLN---TVGACVASAIVKTA 558 (741)
Q Consensus 536 CecC~~~~g---G~G~C~cg~C~C~~ 558 (741)
||-||.+.. -+-+|.-+.|.|++
T Consensus 3 CedcP~HC~~k~a~~~C~n~~C~C~~ 28 (29)
T 1acw_A 3 CEDCPEHCSTQKAQAKCDNDKCVCEP 28 (29)
T ss_dssp SSHHHHHHHTTTCEEEEETTEEEEEC
T ss_pred cccchhhhhcccccccccCCeeecCC
Confidence 554554432 46788888898875
No 191
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=25.44 E-value=27 Score=40.14 Aligned_cols=27 Identities=26% Similarity=0.808 Sum_probs=22.3
Q ss_pred CCCCCeEEeC-c----eeeeC-CCccCCccccc
Q psy12966 460 NCSGFGTFKC-G----LCECD-QSHFGRRCECD 486 (741)
Q Consensus 460 ~Csg~G~c~c-G----~C~C~-~G~~G~~CeC~ 486 (741)
-|.+.|+|.- + .|.|. +||.|..||-+
T Consensus 8 PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~ 40 (587)
T 3nt1_A 8 PCQNRGECMSTGFDQYKCDCTRTGFYGENCTTP 40 (587)
T ss_dssp CCCTTCEEEEEETTEEEEECTTSSEETTTTCEE
T ss_pred CCCCCCEeeCCCCCCeEEecCCCCccCCCCCCc
Confidence 3877889973 3 69999 99999999964
No 192
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=25.41 E-value=30 Score=32.54 Aligned_cols=98 Identities=12% Similarity=0.191 Sum_probs=55.7
Q ss_pred HHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCC-cCCCCCccceecCCCCcccccCCCC
Q psy12966 208 RFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFH-HAGDGKLGGIVKPNDGLCHMDRNGM 286 (741)
Q Consensus 208 ~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H-~agDg~L~Gi~~pnDg~Chl~~~~~ 286 (741)
++.+.|+...-+|.+ --|+.....|+ |.+..+++|++.|+++. .. .|+
T Consensus 37 ki~~~L~lA~kagkl---~~G~kev~KaI--------~~gkakLVIIA~D~~p~e~~---------------~~l----- 85 (144)
T 2jnb_A 37 KLLDLVQQSCNYKQL---RKGANEATKTL--------NRGISEFIVMAADAEPLEII---------------LHL----- 85 (144)
T ss_dssp HHHHHHHHHHHTTCC---CBCHHHHHHHH--------HHTCEEEEEEETTCSCHHHH---------------TTS-----
T ss_pred HHHHHHHHHHHcCCc---cccHHHHHHHH--------HhCCCeEEEEeCCCCHHHHH---------------HHH-----
Confidence 344445544434432 22455556665 34678999999999863 21 112
Q ss_pred ccccccCCCCCHHHHHHHHHhcCccEEEEEecchhhhHHHHhhcc----cCceeeeccCCcchHHHHHHHHhhhc
Q psy12966 287 YTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHI----EGSSSGTLTNDSSNVVDLVKDQYNKI 357 (741)
Q Consensus 287 Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~~~~~Y~~l~~~i----~gs~vg~L~~dSsNiv~lI~~aY~~i 357 (741)
.....+++|..+|.-++. +|...+ +-++++++..+-|++.+++.+..++|
T Consensus 86 ---------------~~lC~~~~VP~~~v~sk~------eLG~a~Gk~~~vs~vaI~~~~~s~i~~~~~~~~~~i 139 (144)
T 2jnb_A 86 ---------------PLLCEDKNVPYVFVRSKQ------ALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSI 139 (144)
T ss_dssp ---------------CSSCGGGCCCCEEESCSH------HHHHHHTCSSCCSEEEEECCTTCTTHHHHHHHHHHH
T ss_pred ---------------HHHHHHhCCCEEEECCHH------HHHHHhCCCCceEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 112345666655544332 333333 33568888877788888887766654
No 193
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Probab=24.90 E-value=23 Score=28.00 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=18.9
Q ss_pred ccCCCceec--C--C----CCccCCCCCceecCcccccee
Q psy12966 507 ECSGRGNCL--C--N----QKSLDNIVNVIISHVIVTTEC 538 (741)
Q Consensus 507 ~Csg~G~C~--c--G----~C~C~~~~~~~~G~~~~~Cec 538 (741)
.|-+.|+|. . + .|.|.. +|+|+. ||.
T Consensus 15 pC~NGGtC~~~~~~~~~~~~C~C~~---Gf~G~~---Ce~ 48 (58)
T 3ltf_D 15 YCLNDAHCFAVKIADLPVYSCECAI---GFMGQR---CEY 48 (58)
T ss_dssp TSCSSCEEEEEEETTEEEEEEEECT---TEESSS---SCE
T ss_pred cCCCCCEEeCCccCCCCCEEeECCC---CCccCC---Ccc
Confidence 588888886 2 2 588854 688888 875
No 194
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=24.48 E-value=2.2e+02 Score=25.63 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=33.1
Q ss_pred ceeEEEEEeeCc----cEEEEEEEeccCCCcce--eEEeecCCCChHHhHHHHHHHHHHHHH
Q psy12966 96 PQHVSLKLRINE----AYRMVVDYAQAEDYPVD--LYYLMDLSNSMRDDKDRLSALGDQLSA 151 (741)
Q Consensus 96 Pq~v~~~LR~G~----~~~~~~~~~~~~~~pvD--ly~LmDlS~SM~ddl~~lk~l~~~l~~ 151 (741)
|..+.|+|++-. .+.+.+.|+-+.+||-- .+.|...-+=-..++..|++....+++
T Consensus 45 ~~~f~I~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~~ 106 (138)
T 2yz0_A 45 QIIFEITLRSVDKEPVESSITLHFAMTPMYPYTAPEIEFKNVQNVMDSQLQMLKSEFKKIHN 106 (138)
T ss_dssp CSCEEEEEECSSCSSCCCEEEEEEECCSSTTSSCCEEEEECCCSCCSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCCCCCCceEEEEEEECCCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 456788888632 67899999999999921 233322212124556666655555443
No 195
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Probab=23.62 E-value=34 Score=32.02 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=18.5
Q ss_pred ccCCCceecCC-------CCccCCCCCceecCcccccee
Q psy12966 507 ECSGRGNCLCN-------QKSLDNIVNVIISHVIVTTEC 538 (741)
Q Consensus 507 ~Csg~G~C~cG-------~C~C~~~~~~~~G~~~~~Cec 538 (741)
.|.+.|+|+.. .|.|+. +|.|++ ||.
T Consensus 14 pC~NGGtC~~~~~~s~~~~C~Cp~---g~~G~~---Cei 46 (145)
T 2i9a_A 14 DCLNGGTCVSNKYFSNIHWCNCPK---KFGGQH---CEI 46 (145)
T ss_dssp CCCTTCEEEECSSSTTCEEEECCT---TEESTT---SCE
T ss_pred CCCCCCCcCCCccccCCccccCCC---CCCCCc---eec
Confidence 47777888633 578854 688988 875
No 196
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=23.37 E-value=95 Score=25.99 Aligned_cols=28 Identities=18% Similarity=0.529 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy12966 698 VLIGLAFLCLWKILTSIHDRREFAKFEK 725 (741)
Q Consensus 698 vliGl~lLliwK~~~~i~DrrE~~kFek 725 (741)
++++|++-++||+++...-++.|+.|=+
T Consensus 25 ~~lsl~~~~~~k~~v~~pRK~aYadFYk 52 (73)
T 1v54_I 25 FMVSLGFATFYKFAVAEKRKKAYADFYR 52 (73)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444555566899999999999999854
No 197
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=22.87 E-value=31 Score=25.09 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=12.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHH
Q psy12966 684 VYILGLVLGVIGAIVLIGLAFLC 706 (741)
Q Consensus 684 ~~~~~Ivlgvi~~ivliGl~lLl 706 (741)
|-..+||+|.| -|.|+||.+..
T Consensus 4 plL~GIVlGli-pvtl~GLfv~A 25 (37)
T 1vf5_G 4 PLLDGLVLGLV-FATLGGLFYAA 25 (37)
T ss_dssp -----CHHHHH-HHHHHHHTHHH
T ss_pred hhhhhHHHhhH-HHHHHHHHHHH
Confidence 34567888876 57788876644
No 198
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=22.65 E-value=1.6e+02 Score=26.18 Aligned_cols=51 Identities=12% Similarity=0.247 Sum_probs=31.2
Q ss_pred HHHHHHhcCccEEEEEecchhhhHHHHhhcc----cCceeeecc-CCcchHHHHHHHHhhhc
Q psy12966 301 INMKVKQNSINLIFAVTAEQIGVYERLKTHI----EGSSSGTLT-NDSSNVVDLVKDQYNKI 357 (741)
Q Consensus 301 l~~~l~e~~I~~Ifavt~~~~~~Y~~l~~~i----~gs~vg~L~-~dSsNiv~lI~~aY~~i 357 (741)
|.....+++|..+|.-+.. +|...+ +-+.++.+. .++..+++.|.+..+++
T Consensus 64 l~~lc~~~~Vp~~~~~sk~------eLG~a~G~~~~~~~vaI~d~g~a~~~~~~l~~~~~~l 119 (120)
T 1vq8_F 64 IPELADEKGVPFIFVEQQD------DLGHAAGLEVGSAAAAVTDAGEADADVEDIADKVEEL 119 (120)
T ss_dssp HHHHHHTTCCCEEEESCHH------HHHHHTTCSSCCSEEEESSCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCEEEECCHH------HHHHHhCCCCCeEEEEEecCchHHHHHHHHHHHHHhc
Confidence 4455667888765554433 344444 345666664 45667888888877765
No 199
>1du9_A BMP02 neurotoxin; helix, sheet; NMR {Mesobuthus martensii} SCOP: g.3.7.2 PDB: 1wm8_A
Probab=22.56 E-value=21 Score=24.21 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=14.2
Q ss_pred ceeecCCCC---CceeeecCceEec
Q psy12966 536 TECCVLDLN---TVGACVASAIVKT 557 (741)
Q Consensus 536 CecC~~~~g---G~G~C~cg~C~C~ 557 (741)
||-||.+.. -+-+|..+.|.|+
T Consensus 3 CeecP~HC~~k~a~~~Cdn~~C~C~ 27 (28)
T 1du9_A 3 CEECPMHCKGKNAKPTCDDGVCNCN 27 (28)
T ss_dssp TTSHHHHSCSSSCCEEEETTEEEEC
T ss_pred cccchhhhccccccccccCCeeecc
Confidence 555555443 3677888888885
No 200
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=22.46 E-value=39 Score=35.87 Aligned_cols=6 Identities=50% Similarity=0.678 Sum_probs=2.5
Q ss_pred EEEEEe
Q psy12966 99 VSLKLR 104 (741)
Q Consensus 99 v~~~LR 104 (741)
+.|.+|
T Consensus 55 ~~i~~r 60 (319)
T 1lsh_B 55 VVIVLR 60 (319)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444444
No 201
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=21.81 E-value=56 Score=21.39 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHHHHhc
Q psy12966 713 SIHDRREFAKFEKERMLA 730 (741)
Q Consensus 713 ~i~DrrE~~kFekE~~~a 730 (741)
+-.|||..++|||-.+-+
T Consensus 5 tsrdrrriarwekriaya 22 (26)
T 1hji_B 5 TSRDRRRIARWEKRIAYA 22 (26)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 457999999999988654
No 202
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=21.37 E-value=66 Score=29.86 Aligned_cols=32 Identities=9% Similarity=0.104 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy12966 694 IGAIVLIGLAFLCLWKILTSIHDRREFAKFEK 725 (741)
Q Consensus 694 i~~ivliGl~lLliwK~~~~i~DrrE~~kFek 725 (741)
++.|++||||+.+++-.+....+|.+.+....
T Consensus 7 ~vvi~ii~il~~~~~p~~~~~~~~~~~~~~~~ 38 (158)
T 2hi2_A 7 MIVIAIVGILAAVALPAYQDYTARAQVSEAIL 38 (158)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 44456667777766666666666655544443
No 203
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=21.24 E-value=63 Score=38.35 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=28.7
Q ss_pred CCccCCCCCcee---cCcccccee---ecCCCCCceeeec--C--ceEecCCceeccccccCC
Q psy12966 518 QKSLDNIVNVII---SHVIVTTEC---CVLDLNTVGACVA--S--AIVKTAGLVQRVTVAPLM 570 (741)
Q Consensus 518 ~C~C~~~~~~~~---G~~~~~Cec---C~~~~gG~G~C~c--g--~C~C~~G~~G~~~~~~C~ 570 (741)
.|.|.. +|. |+. |+- |.....-.+.|.- | .|.|.+||.+.....+|.
T Consensus 334 ~C~C~~---Gy~l~~g~~---C~dideC~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~~~~~C~ 390 (791)
T 3m0c_C 334 ECLCPD---GFQLVAQRR---CEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK 390 (791)
T ss_dssp EEECCT---TCEEETTTE---EECCCCCSSSSSCTTTCCBCSSCBCCCCCSSEECCSSCCCCE
T ss_pred ccCCCC---CCccCCCCc---cccCcccCCCCCCCCeeecCCCCceeecCCCCEeCCCCceee
Confidence 588854 564 677 875 7522111235542 2 799999999855555664
No 204
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=20.27 E-value=1.3e+02 Score=26.95 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=35.2
Q ss_pred ceeEEEEEeeC------ccEEEEEEEeccCCCcce--eEEeecCCCChHHhHHHHHHHHHHHHHH
Q psy12966 96 PQHVSLKLRIN------EAYRMVVDYAQAEDYPVD--LYYLMDLSNSMRDDKDRLSALGDQLSAS 152 (741)
Q Consensus 96 Pq~v~~~LR~G------~~~~~~~~~~~~~~~pvD--ly~LmDlS~SM~ddl~~lk~l~~~l~~~ 152 (741)
|..++|+|++- ..+.|.+.|+-+.+||-- .+.|.+..+=-..++..|++....++++
T Consensus 44 ~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e 108 (137)
T 1ukx_A 44 PPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKK 108 (137)
T ss_dssp CCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEEESSSSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 67788999872 147899999999999921 2333332222245666666665555544
No 205
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=20.15 E-value=94 Score=23.00 Aligned_cols=20 Identities=10% Similarity=0.293 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12966 689 LVLGVIGAIVLIGLAFLCLW 708 (741)
Q Consensus 689 Ivlgvi~~ivliGl~lLliw 708 (741)
.+.|.++++..||++-|..+
T Consensus 11 Wlvgtv~G~~vi~~~giFfy 30 (40)
T 3arc_J 11 WIVATVAGMGVIVIVGLFFY 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred EeeeeehhhhhhheeeEEEe
Confidence 34567778888888877654
No 206
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}
Probab=20.14 E-value=48 Score=38.07 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=21.6
Q ss_pred CCCCCCeEEeCceeeeCCCccCCccccc
Q psy12966 459 PNCSGFGTFKCGLCECDQSHFGRRCECD 486 (741)
Q Consensus 459 ~~Csg~G~c~cG~C~C~~G~~G~~CeC~ 486 (741)
..|.+++.|.--.|.|.++|.++.+.|+
T Consensus 52 ~~c~~~~~~~~c~~~C~~~~~~~~~~c~ 79 (680)
T 1zlg_A 52 VWCQNHKQCSKCLEPCKESGDLRKHQCQ 79 (680)
T ss_pred ecCCCccccccccCcccccccCchhhch
Confidence 4699999986334689999998887665
Done!