RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12966
(741 letters)
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 466 bits (1201), Expect = e-155
Identities = 194/508 (38%), Positives = 278/508 (54%), Gaps = 42/508 (8%)
Query: 17 DKKRCFQPSLNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSSSSS 76
RC + + C E + P + VL++R L
Sbjct: 34 GSPRCDLKE---NLLKDNCAPESIEFPVSEARVLEDRPL--------------------- 69
Query: 77 GSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMR 136
S + S+ Q+SPQ ++L+LR +++ + Q EDYPVD+YYLMDLS SM+
Sbjct: 70 ----SDKGSGDSSQVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMK 125
Query: 137 DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSM-VPKNLLEPCAG----CA 191
DD + LG +L+ M+++TSN R+GFG+FVDK V PY+ + P+ L PC C
Sbjct: 126 DDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCL 185
Query: 192 APYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRL 251
+GY +V++L+ +RF+ +VK +VS N D PEGGFDAIMQA VC E+IGWR+ A L
Sbjct: 186 PMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHL 245
Query: 252 LVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSIN 311
LVF+TDA+ H A DG+L GIV+PNDG CH+ + Y+ ST DYPS+ + K+ Q +IN
Sbjct: 246 LVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNIN 305
Query: 312 LIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMK-DTSSSA 370
LIFAVT + +Y+ I G++ G L+ DSSNV+ L+ D Y KI S VE++
Sbjct: 306 LIFAVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEE 365
Query: 371 VKVTYHSKCLNKDGPSKPTAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGI 430
+ +++++ CLN C GLK+G V F I+ +V CP E ++F I PVG
Sbjct: 366 LSLSFNATCLNN-EVIPGLKSCMGLKIGDTVSFSIEAKVRGCP---QEKEKSFTIKPVGF 421
Query: 431 DETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESS 490
++L V + C+C C+ P+ + +G GTF+CG+C C G +CEC E
Sbjct: 422 KDSLIVQVTFDCDCACQAQAEPN---SHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDY 478
Query: 491 QGITSTGCKADANSTMECSGRGNCLCNQ 518
+ C CS RG CLC Q
Sbjct: 479 RPSQQDECSPR-EGQPVCSQRGECLCGQ 505
Score = 52.4 bits (125), Expect = 5e-07
Identities = 24/77 (31%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 442 CECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKAD 501
CE D CSG G CG C CD G C C + ++S G
Sbjct: 517 TGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLL-- 574
Query: 502 ANSTMECSGRGNCLCNQ 518
CSGRG C C
Sbjct: 575 ------CSGRGKCECGS 585
Score = 42.8 bits (100), Expect = 4e-04
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 640 NEAKDENLCVYFDEDECKFEYVYWYDAQGKIHLRAQQERECPP 682
+ KD C Y +ED+C + Y+ D+ GK L +E EC
Sbjct: 647 DTGKDAVNCTYKNEDDCVVRFQYYEDSSGKSILYVVEEPECCK 689
Score = 40.5 bits (94), Expect = 0.002
Identities = 29/134 (21%), Positives = 39/134 (29%), Gaps = 39/134 (29%)
Query: 442 CECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHF-GRRCE---------------- 484
C C D S N CSG G +CG C C Q G CE
Sbjct: 558 CNCTTRTDTCMS--SNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKECV 615
Query: 485 ---------------CDAESSQGITSTGC-KADANSTMECSGRGNCLCNQK---SLDNIV 525
C+ I S K + C+ + C + D+
Sbjct: 616 ECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNCTYKNEDDCVVRFQYYEDSSG 675
Query: 526 NVIISHVIVTTECC 539
I+ +V+ ECC
Sbjct: 676 KSIL-YVVEEPECC 688
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 448 bits (1153), Expect = e-151
Identities = 182/491 (37%), Positives = 267/491 (54%), Gaps = 47/491 (9%)
Query: 8 PTYNSSEYGDKKRCFQPSLNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHSQHS 67
+ +S + +RC + + CP E + P VL ++ L++ ++
Sbjct: 48 LNFTASGEAEARRCARRE---ELLARGCPLEELEEPRGQQEVLQDQPLSQGAR------- 97
Query: 68 SSSSSSSSSGSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYY 127
A Q++PQ V + LR E ++ V + +AE YPVDLYY
Sbjct: 98 --------------------GEGATQLAPQRVRVTLRPGEPQQLQVRFLRAEGYPVDLYY 137
Query: 128 LMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPC 187
LMDLS SM+DD +R+ LG L +QEVT + R+GFGSFVDK V+P+VS VP L PC
Sbjct: 138 LMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPC 197
Query: 188 AG----CAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIG 243
C +P+ +H+V+SL+ D F +V +VSGNLD PEGGFDAI+QA +C+E+IG
Sbjct: 198 PTRLERCQSPFSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIG 257
Query: 244 WRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINM 303
WR+ RLLVF++D FH AGDGKLGGI P+DG CH+D NG+Y+ ST DYPS+ Q+
Sbjct: 258 WRN-VSRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQ 316
Query: 304 KVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEM 363
+ +I IFAVT+ + VY+ L I S+ G L+ DSSNVV L+ D YN +SS+V +
Sbjct: 317 ALSAANIQPIFAVTSAALPVYQELSKLIPKSAVGELSEDSSNVVQLIMDAYNSLSSTVTL 376
Query: 364 KDTSS-SAVKVTYHSKCLN---KDGPSKPTAKCDGLKVGTVVHFEIDIEVTACPANRSEW 419
+ +S V ++Y S+C ++G ++ +C+ +++ V F + ++ T C
Sbjct: 377 EHSSLPPGVHISYESQCEGPEKREGKAEDRGQCNHVRINQTVTFWVSLQATHCLPE---- 432
Query: 420 MQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHF 479
+ +G E L V+L C+C C + G G +CG+C C
Sbjct: 433 PHLLRLRALGFSEELIVELHTLCDCNCSDTQPQA----PHCSDGQGHLQCGVCSCAPGRL 488
Query: 480 GRRCECDAESS 490
GR CE +
Sbjct: 489 GRLCESRGLEN 499
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 448 bits (1153), Expect = e-148
Identities = 182/517 (35%), Positives = 268/517 (51%), Gaps = 55/517 (10%)
Query: 8 PTYNSSEYGDKKRCFQPSLNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHSQHS 67
+ D RC + C + + +P ++ ++ +
Sbjct: 27 LNFTGPGDPDSIRCDTR---PQLLMRGCAADDIMDPTSLAETQEDHNG------------ 71
Query: 68 SSSSSSSSSGSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYY 127
Q+SPQ V+L LR +A V + +A+ YP+DLYY
Sbjct: 72 ----------------------GQKQLSPQKVTLYLRPGQAAAFNVTFRRAKGYPIDLYY 109
Query: 128 LMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPC 187
LMDLS SM DD + LG L ++ E+T + R+GFGSFVDK V+P+V+ P L PC
Sbjct: 110 LMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPC 169
Query: 188 AG----CAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIG 243
C P+ + +V+ L+ ++++F +V +SGNLD PEGG DA+MQ C EEIG
Sbjct: 170 PNKEKECQPPFAFRHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIG 229
Query: 244 WRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINM 303
WR+ RLLVF+TD FH AGDGKLG I+ PNDG CH++ + +Y S DYPS+ Q+
Sbjct: 230 WRN-VTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLE-DNLYKRSNEFDYPSVGQLAH 287
Query: 304 KVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEM 363
K+ +N+I IFAVT+ + YE+L I S+ G L+ DSSNVV L+K+ YNK+SS V +
Sbjct: 288 KLAENNIQPIFAVTSRMVKTYEKLTEIIPKSAVGELSEDSSNVVQLIKNAYNKLSSRVFL 347
Query: 364 K-DTSSSAVKVTYHSKCLNKD-GPSKPTAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQ 421
+ +KVTY S C N ++P CDG+++ + F++ + T C Q
Sbjct: 348 DHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECI-----QEQ 402
Query: 422 TFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGR 481
+F I +G + + V + QCEC C + C G G +CG+C CD + G+
Sbjct: 403 SFVIRALGFTDIVTVQVLPQCECRCRDQSR-----DRSLCHGKGFLECGICRCDTGYIGK 457
Query: 482 RCECDAESSQGITSTGCKADANSTMECSGRGNCLCNQ 518
CEC + G N+++ CSG G+C+C Q
Sbjct: 458 NCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQ 494
Score = 47.4 bits (112), Expect = 2e-05
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 442 CECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKAD 501
C C+ + G G CG C C G C+C+ T+ GC
Sbjct: 510 QYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCE------RTTEGC--L 561
Query: 502 ANSTMECSGRGNCLCNQ 518
+ECSGRG C CN
Sbjct: 562 NPRRVECSGRGRCRCNV 578
Score = 41.2 bits (96), Expect = 0.001
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 17/73 (23%)
Query: 442 CECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKAD 501
C+C +G + CSG G +C +CEC + C+ GC +
Sbjct: 551 CQCERTTEGCLN--PRRVECSGRGRCRCNVCECHSGYQLPLCQ---------ECPGCPSP 599
Query: 502 ANSTMECSGRGNC 514
C +C
Sbjct: 600 ------CGKYISC 606
Score = 31.6 bits (71), Expect = 1.1
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 11/76 (14%)
Query: 619 QEFKNCIQCQVLQD----------RTIVRGGNEAKDENLCVYFDEDECKFEYVYWY-DAQ 667
++ +C +C + ++ N C D + C Y D
Sbjct: 601 GKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGM 660
Query: 668 GKIHLRAQQERECPPH 683
+ + + REC
Sbjct: 661 DRYLIYVDESRECVAG 676
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich,
fibronecti receptor, cell adhesion-immune system
complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB:
3vi4_B*
Length = 454
Score = 428 bits (1100), Expect = e-143
Identities = 185/454 (40%), Positives = 246/454 (54%), Gaps = 35/454 (7%)
Query: 4 CPVC--PTYNSSEYGDKKRCFQPSLNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKY 61
C C T+ RC + CP + + NP + N+++ SK
Sbjct: 25 CGWCTNSTFLQEGMPTSARCDDLE---ALKKKGCPPDDIENPRGSKDIKKNKNVTNRSKG 81
Query: 62 HHSQHSSSSSSSSSSGSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDY 121
+ + QI PQ + L+LR E + + +AEDY
Sbjct: 82 TAEKLKPE--------------------DIHQIQPQQLVLRLRSGEPQTFTLKFKRAEDY 121
Query: 122 PVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPK 181
P+DLYYLMDLS SM+DD + + +LG L M+ +TS+FR+GFGSFV+K VMPY+S P
Sbjct: 122 PIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPA 181
Query: 182 NLLEPCAG---CAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVC 238
L PC C P+ Y NV+SL+ F+ V +SGNLD PEGGFDAIMQ VC
Sbjct: 182 KLRNPCTSEQNCTTPFSYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVC 241
Query: 239 KEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSI 298
IGWR+ RLLVFSTDA FH AGDGKLGGIV PNDG CH++ N MYT S DYPSI
Sbjct: 242 GSLIGWRN-VTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLE-NNMYTMSHYYDYPSI 299
Query: 299 SQINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKIS 358
+ + K+ +N+I IFAVT E VY+ LK I S+ GTL+ +SSNV+ L+ D YN +S
Sbjct: 300 AHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVIQLIIDAYNSLS 359
Query: 359 SSVEMKDTSS-SAVKVTYHSKCLNK-DGPSKPTAKCDGLKVGTVVHFEIDIEVTACPANR 416
S V +++ V ++Y S C N +G + KC + +G V FEI I CP
Sbjct: 360 SEVILENGKLSEGVTISYKSYCKNGVNGTGENGRKCSNISIGDEVQFEISITSNKCPKKD 419
Query: 417 SEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDG 450
S +F I P+G E + V L+ CEC ++
Sbjct: 420 S---DSFKIRPLGFTEEVEVILQYICECEGGLEN 450
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 424 bits (1091), Expect = e-142
Identities = 186/475 (39%), Positives = 268/475 (56%), Gaps = 43/475 (9%)
Query: 17 DKKRCFQPSLNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSSSSS 76
RC + + C E + P + VL++R L
Sbjct: 34 GSPRCDLKE---NLLKDNCAPESIEFPVSEARVLEDRPL--------------------- 69
Query: 77 GSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMR 136
S + S+ Q+SPQ ++L+LR +++ + Q EDYPVD+YYLMDLS SM+
Sbjct: 70 ----SDKGSGDSSQVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMK 125
Query: 137 DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMV-PKNLLEPCAG----CA 191
DD + LG +L+ M+++TSN R+GFG+FVDK V PY+ + P+ L PC C
Sbjct: 126 DDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCL 185
Query: 192 APYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRL 251
+GY +V++L+ +RF+ +VK +VS N D PEGGFDAIMQA VC E+IGWR+ A L
Sbjct: 186 PMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHL 245
Query: 252 LVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSIN 311
LVF+TDA+ H A DG+L GIV+PNDG CH+ + Y+ ST DYPS+ + K+ Q +IN
Sbjct: 246 LVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNIN 305
Query: 312 LIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMK-DTSSSA 370
LIFAVT + +Y+ I G++ G L+ DSSNV+ L+ D Y KI S VE++
Sbjct: 306 LIFAVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEE 365
Query: 371 VKVTYHSKCLNKDGPSKPTAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGI 430
+ +++++ CLN + C GLK+G V F I+ +V CP E ++F I PVG
Sbjct: 366 LSLSFNATCLNNE-VIPGLKSCMGLKIGDTVSFSIEAKVRGCP---QEKEKSFTIKPVGF 421
Query: 431 DETLRVDLEMQCECPCEVDGHPSFVRNSPNCS-GFGTFKCGLCECDQSHFGRRCE 484
++L V + C+C C+ P NS C+ G GTF+CG+C C G +CE
Sbjct: 422 KDSLIVQVTFDCDCACQAQAEP----NSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas,
admidas, membrane, integrin, titration, rossman fold,
cell adhesion, transmembrane; NMR {Mus musculus}
Length = 212
Score = 298 bits (763), Expect = 6e-97
Identities = 83/238 (34%), Positives = 128/238 (53%), Gaps = 26/238 (10%)
Query: 120 DYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMV 179
D VDLY+LM LS S + + LG L ++ E++ + R+GFGS V+
Sbjct: 1 DNSVDLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNMT-------- 52
Query: 180 PKNLLEPCAGCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCK 239
+ +++ L+ D+S+F +++ VSG L P+G DA++Q +C
Sbjct: 53 ----------------FQHILKLTADSSQFQRELRKQLVSGKLATPKGQLDAVVQVAICL 96
Query: 240 EEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSIS 299
EIGWR+ R LV TD +FH A D LG +DG CH+D +GMY DY S+
Sbjct: 97 GEIGWRN-GTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLD-DGMYRSRGEPDYQSVV 154
Query: 300 QINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKI 357
Q+ K+ +N+I IF V + + YE+L T I + G L++DSSNV L+++ Y+K+
Sbjct: 155 QLASKLAENNIQPIFVVPSRMVKTYEKLTTFIPKLTIGELSDDSSNVAQLIRNAYSKL 212
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 134 bits (338), Expect = 6e-36
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 12/165 (7%)
Query: 356 KISSSVEMKDTSS-SAVKVTYHSKCLNKD-GPSKPTAKCDGLKVGTVVHFEIDIEVTACP 413
K+SS V + + +KVTY S C N ++P CDG+++ + F++ + T C
Sbjct: 1 KLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECI 60
Query: 414 ANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCE 473
Q+F I +G + + V + QCEC C + C G G +CG+C
Sbjct: 61 QE-----QSFVIRALGFTDIVTVQVLPQCECRCRDQSR-----DRSLCHGKGFLECGICR 110
Query: 474 CDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLCNQ 518
CD + G+ CEC + G N+++ CSG G+C+C Q
Sbjct: 111 CDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQ 155
Score = 34.2 bits (78), Expect = 0.10
Identities = 10/42 (23%), Positives = 13/42 (30%)
Query: 444 CPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCEC 485
C C+ + G G CG C C G C+
Sbjct: 173 CECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQH 214
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 131 bits (330), Expect = 3e-34
Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 11/196 (5%)
Query: 324 YERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTSSSAVKVTYHSKCLNKD 383
K + L + ++ + S + +KVTY S C N
Sbjct: 70 NGGQKQLSPQKVTLYLRPGQAAAFNVTFRRAKLSSRVFLDHNALPDTLKVTYDSFCSNGV 129
Query: 384 -GPSKPTAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQC 442
++P CDG+++ + F++ + T C Q+F I +G + + V + QC
Sbjct: 130 THRNQPRGDCDGVQINVPITFQVKVTATECIQE-----QSFVIRALGFTDIVTVQVLPQC 184
Query: 443 ECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKADA 502
EC C C G G +CG+C CD + G+ CEC + G
Sbjct: 185 ECRCRDQSRDR-----SLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKD 239
Query: 503 NSTMECSGRGNCLCNQ 518
N+++ CSG G+C+C Q
Sbjct: 240 NNSIICSGLGDCVCGQ 255
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A
cleavage on PAIR of basic residues, disease mutation,
disul bond, glycoprotein; NMR {Homo sapiens}
Length = 79
Score = 86.9 bits (215), Expect = 4e-21
Identities = 35/54 (64%), Positives = 44/54 (81%)
Query: 686 ILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKERMLAKWDTKLNSL 739
IL ++L V+GAI+LIGLA L +WK+L +IHDR+EFAKFE+ER AKWDT N L
Sbjct: 10 ILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTANNPL 63
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on
basic residues, disease mutation, glycoprotein,
pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB:
2rmz_A 2rn0_A 2l91_A
Length = 43
Score = 76.5 bits (188), Expect = 9e-18
Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 679 ECPPHVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREF 720
E P IL ++L V+GAI+LIGLA L +WK+L +IHDR+EF
Sbjct: 2 ESPKGPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEF 43
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1
PDB: 2ljd_A* 2lje_A* 2ljf_A*
Length = 67
Score = 64.2 bits (156), Expect = 3e-13
Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 697 IVLIGLAFLCLWKILTSIHDRREFAKFEKERMLAKWDTKLNSL 739
+V G K+L +IHDR+EFAKFE+ER AKWDT N L
Sbjct: 13 LVPRGSH----MKLLITIHDRKEFAKFEEERARAKWDTANNPL 51
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion;
NMR {Homo sapiens}
Length = 75
Score = 62.7 bits (152), Expect = 1e-12
Identities = 24/39 (61%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Query: 702 LAFLCL-WKILTSIHDRREFAKFEKERMLAKWDTKLNSL 739
++ CL WK+L +IHDR+EFAKFE+ER AKWDT N L
Sbjct: 21 MSPECLIWKLLITIHDRKEFAKFEEERARAKWDTANNPL 59
>3g9w_C Integrin beta-1D; protein-protein complex, PH domain superfold, PTB
domain, HE bundle, intrinsically unstructured, cell
adhesion; 2.17A {Homo sapiens} PDB: 1kup_B 1kuz_B
Length = 52
Score = 61.4 bits (149), Expect = 2e-12
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 708 WKILTSIHDRREFAKFEKERMLAKWDTKLNSL 739
K+L IHDRREFAKFEKE+M AKWDT+ N +
Sbjct: 2 PKLLMIIHDRREFAKFEKEKMNAKWDTQENPI 33
>1m8o_B Platele integrin BETA3 subunit: cytoplasmic domain; ALFA helix,
platelet, membrane protein; NMR {Homo sapiens} SCOP:
j.60.1.1 PDB: 2l1c_B* 2h7d_B* 2h7e_B*
Length = 47
Score = 58.3 bits (141), Expect = 2e-11
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 709 KILTSIHDRREFAKFEKERMLAKWDTKLNSL 739
K+L +IHDR+EFAKFE+ER AKWDT N L
Sbjct: 1 KLLITIHDRKEFAKFEEERARAKWDTANNPL 31
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 5e-09
Identities = 78/531 (14%), Positives = 149/531 (28%), Gaps = 147/531 (27%)
Query: 230 DAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTH 289
DA + CK+ +D + +L + E H I+ D + R ++
Sbjct: 27 DAFVDNFDCKDV---QDMPKSIL---SKEEIDH--------IIMSKDAVSGTLR--LFW- 69
Query: 290 STVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDL 349
+ KQ + F +I Y+ L + I+ T S + +
Sbjct: 70 ------------TLLSKQEEMVQKFVEEVLRIN-YKFLMSPIK-----TEQRQPSMMTRM 111
Query: 350 VKDQYNKISSSVEM--KDTSSSAVKVTYHSKCLNKDGPSKPTAKCDGLK-VG-TVVHFEI 405
+Q +++ + ++ K S + L + P+K DG+ G T V ++
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDGVLGSGKTWVALDV 170
Query: 406 --DIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSG 463
+V + W+ + + LEM
Sbjct: 171 CLSYKVQCKMDFKIFWLN------LKNCNSPETVLEML---------------QK----- 204
Query: 464 FGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLCNQKSLDN 523
L ++ R + + I S +A+ ++ NCL L N
Sbjct: 205 -------LLYQIDPNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYENCLL---VLLN 252
Query: 524 IVNV-IISHVIVTTECCVLDLNTVGACVASAIVKTAGLVQRVTVAPLMTPVYLLREERCA 582
+ N + + C +L L T V + T L L +
Sbjct: 253 VQNAKAWNAFNL--SCKIL-LTTRFKQVTDFLS-----AATTTHISLDHHSMTLTPD--- 301
Query: 583 RARESVSAVCANVLKIAREDIPAGSARNARPVL-----EDVQEFKNCIQ--CQVLQDR-- 633
E S + L +D+P P E +++ V D+
Sbjct: 302 ---EVKS-LLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 634 TIVRGGNEAKDENLCVYFDEDECKFEYVYWYDAQGKIHLRAQQEREC---PPHVYILGLV 690
TI+ E+ L + E + + PP +I ++
Sbjct: 357 TII----ESSLNVL----EPAEYRKMF-----------------DRLSVFPPSAHIPTIL 391
Query: 691 LGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKERMLAKWDTKLNSLIY 741
L + +W + K K ++ K + I
Sbjct: 392 LSL-------------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Score = 45.6 bits (107), Expect = 6e-05
Identities = 71/506 (14%), Positives = 133/506 (26%), Gaps = 167/506 (33%)
Query: 18 KKRCFQPSLNADDNLEQCPEEY----VFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSS 73
K QPS+ +EQ Y VF NV +R + + +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-----SRL-----QPYLKLRQALLELR 148
Query: 74 SSSGSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSN 133
+ G SG + + + Y +++L +L N
Sbjct: 149 PAKNVLIDGVLGSGKT----------WV---ALDVCL---SYKVQCKMDFKIFWL-NLKN 191
Query: 134 SMRDDKD-----RLSALGDQLSASMQEVTSNFRLGFGSFVDKVVM-----PYVSMVPKNL 183
+ +L D S + +SN +L S ++ PY L
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENCL 247
Query: 184 LEPCAGCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIG 243
L V+ + V+ A + F+ + CK
Sbjct: 248 L--------------VLL---N-------VQNAKA---WN----AFN-----LSCK---- 267
Query: 244 WRDRARRLLVFSTD---AEFHHAGDGKLGGIVKPNDGLCHMDRNGM---YTHSTVQDYPS 297
+L+ + +F A + + L + + Y QD P
Sbjct: 268 -------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 298 -ISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVD--LVKDQY 354
+ N + +++I + + ++ K H+ T+ S NV++ + +
Sbjct: 321 EVLTTNPRR----LSIIAESIRDGLATWDNWK-HVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 355 N---------KISSSV------EMKDTSSSAVKVTYHSKCL-NKDGPSKPTAKCDGLKVG 398
+ I + + ++ + V H L K
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE------------ 423
Query: 399 TVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNS 458
T I + LE++ + E H S V +
Sbjct: 424 ----------------------STISIP----S----IYLELKVKLENEYALHRSIVDHY 453
Query: 459 PNCSGFGTFKCGLCECDQ---SHFGR 481
F + DQ SH G
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGH 479
Score = 39.1 bits (90), Expect = 0.006
Identities = 56/411 (13%), Positives = 111/411 (27%), Gaps = 113/411 (27%)
Query: 97 QHVSLKLRINE---AYR-MVVDYAQA--EDYPVDLYYLMDLSNSMRDDKDRLSALGDQLS 150
H + E Y+ ++ + A +++ D + D+ S+ ++ D +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNF--DCKDVQDMPKSILSKEEI-----DHII 55
Query: 151 ASMQEVTSNFRLGFGSFVDK---VVMPYV-SMVPKN---LLEPCAG-CAAPYG------- 195
S V+ RL F + + K +V +V ++ N L+ P P
Sbjct: 56 MSKDAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 196 YHNVMSLSQDTSRFS----------AQVKGA--------NVSGNLDGPEGGF-DAIMQAI 236
+ L D F+ +++ A NV +DG G +
Sbjct: 115 QRDR--LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--IDGV-LGSGKTWVALD 169
Query: 237 VCKEE---------IGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCH-MDRNGM 286
VC I W + S + +++ L + +D N
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNC---NSPET------------VLEMLQKLLYQIDPN-- 212
Query: 287 YTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYER-L--------KTHIE--GSS 335
++ D+ S ++ + Q + + YE L S
Sbjct: 213 --WTSRSDHSSNIKLRIHSIQAELRRLLKSK-----PYENCLLVLLNVQNAKAWNAFNLS 265
Query: 336 SGTL--TNDSSNVVDLVKDQYNKISSSVEMKDTSSSAVKVTYHSKCLNKDGPSKPTAKCD 393
L T V D + S T + + K L+ P
Sbjct: 266 CKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 394 G--LKVGTVVHFEIDIEVTACPANRSE-WMQTFYIYPVGIDETLRVDLEMQ 441
++ + D + W + + L +
Sbjct: 325 TNPRRLSIIAESIRD------GLATWDNWKHVNCD---KLTTIIESSLNVL 366
>2jf1_T Integrin beta-2 subunit; actin-binding, cell adhesion,
transmembrane, acetylation, polymorphism, cytoskeleton,
glycoprotein, filamin, complex; 2.2A {Homo sapiens}
Length = 35
Score = 35.3 bits (81), Expect = 0.002
Identities = 5/16 (31%), Positives = 12/16 (75%)
Query: 720 FAKFEKERMLAKWDTK 735
+ +FEKE++ ++W+
Sbjct: 1 YRRFEKEKLKSQWNND 16
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 36.8 bits (85), Expect = 0.024
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 12/76 (15%)
Query: 442 CECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKAD 501
C + DG +F + + G L + F + C+ Q GC+
Sbjct: 107 FPCLGKQDGVAAFEVDVIVMNSEG--NTILKTPQNAIFFKTCQ------QAECPGGCRNG 158
Query: 502 ANSTMECSGRGNCLCN 517
C+ R C C
Sbjct: 159 GF----CNERRICECP 170
Score = 34.1 bits (78), Expect = 0.15
Identities = 20/86 (23%), Positives = 26/86 (30%), Gaps = 24/86 (27%)
Query: 441 QCECP-------CEVDGHPSFVRNSPNCSGFGT-FKCGLCECDQSHFGRRCECDAESSQG 492
C CP C+ S C GT F G C C G +CE
Sbjct: 198 FCICPPGFYGVNCDKA------NCSTTCFNGGTCFYPGKCICPPGLEGEQCEIS------ 245
Query: 493 ITSTGCKADANSTMECSGRGNCLCNQ 518
C+ C G+ C C++
Sbjct: 246 KCPQPCRNGGK----CIGKSKCKCSK 267
Score = 29.4 bits (66), Expect = 3.8
Identities = 22/87 (25%), Positives = 27/87 (31%), Gaps = 28/87 (32%)
Query: 441 QCECP-------CEVDGHPSFVRNSPNCSGFGTFKC---GLCECDQSHFGRRCECDAESS 490
CECP CE +P C G C G C C +G C+
Sbjct: 166 ICECPDGFHGPHCEKA------LCTPRCMNGGL--CVTPGFCICPPGFYGVNCD------ 211
Query: 491 QGITSTGCKADANSTMECSGRGNCLCN 517
+ ST C C G C+C
Sbjct: 212 KANCSTTCFNGG----TCFYPGKCICP 234
Score = 28.7 bits (64), Expect = 7.0
Identities = 14/81 (17%), Positives = 19/81 (23%), Gaps = 16/81 (19%)
Query: 441 QCECPCEVDGHP-SFVRNSPNCSGFGTFKC---GLCECDQSHFGRRCECDAESSQGITST 496
+ C G C +CEC G CE + +
Sbjct: 134 LKTPQNAIFFKTCQQAECPGGCRNGGF--CNERRICECPDGFHGPHCEKA------LCTP 185
Query: 497 GCKADANSTMECSGRGNCLCN 517
C C G C+C
Sbjct: 186 RCMNGGL----CVTPGFCICP 202
Score = 28.7 bits (64), Expect = 7.5
Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 28/87 (32%)
Query: 441 QCECP-------CEVDGHPSFVRNSPNCSGFGTFKC---GLCECDQSHFGRRCECDAESS 490
+C CP CE+ + C G C C+C + + G C
Sbjct: 230 KCICPPGLEGEQCEIS------KCPQPCRNGGK--CIGKSKCKCSKGYQGDLCSKP---- 277
Query: 491 QGITSTGCKADANSTMECSGRGNCLCN 517
+ GC A C C C
Sbjct: 278 --VCEPGCGAHGT----CHEPNKCQCQ 298
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.026
Identities = 70/486 (14%), Positives = 135/486 (27%), Gaps = 163/486 (33%)
Query: 75 SSGSFSSGG--SASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDY--PVDLY--YL 128
S GS + A Q+ Q + E +A ++ P +L +L
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNK---ILPEPTE---GFAADDEPTTPAELVGKFL 65
Query: 129 MDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFG---SFV------DKVVMPYVSMV 179
+S+ + ++ L+ + E + + L + + + +
Sbjct: 66 GYVSS--LVEPSKVGQFDQVLNLCLTEFENCY-LEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 180 PKNLLEPCAGCAAPYGYHNVMSLSQDTSR--------FSAQVKGANVSGNLDGPEGGFDA 231
KN + P+ + +L + F Q GN + F+
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ-------GN---TDDYFE- 171
Query: 232 IMQAIVCKEEIGWRDRARRLLVFSTD----AEFHHAGDGKLGGIVKPNDGLCHMDRNGMY 287
E+ R L + T + L +++ +D ++
Sbjct: 172 ---------EL------RDL--YQTYHVLVGDLIKFSAETLSELIR-----TTLDAEKVF 209
Query: 288 TH-----------STV--QDYPSISQINMKVKQNSINLI-------FAVTAEQIGV-YER 326
T S +DY I S LI + VTA+ +G
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPI-------SCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 327 LKTHIEGSSSGTLTNDSSNVVD-LVKDQYNKISSSV---EMKDTSSSAVKVTYH--SKCL 380
L+++++G T S +V + I+ + + A+ V + +C
Sbjct: 263 LRSYLKG-----ATGHSQGLVTAVA------IAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 381 NKDGPS--KPTAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDL 438
+ P+ D L+ E P M + I + +
Sbjct: 312 EAYPNTSLPPSILEDSLENN---------EGVPSP------M-------LSISNLTQEQV 349
Query: 439 EMQCECPCEVDGH-PSF------VRNSPN---CSGFGTFKCGLC----------ECDQSH 478
+ + + H P+ + N SG GL DQS
Sbjct: 350 QDYVN---KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 479 --FGRR 482
F R
Sbjct: 407 IPFSER 412
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 33.8 bits (77), Expect = 0.082
Identities = 12/62 (19%), Positives = 16/62 (25%), Gaps = 4/62 (6%)
Query: 457 NSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLC 516
N+ CS +G G C + C C + CS G C
Sbjct: 14 NNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQC----CSQYGYCGF 69
Query: 517 NQ 518
Sbjct: 70 GA 71
Score = 30.4 bits (68), Expect = 1.3
Identities = 15/79 (18%), Positives = 19/79 (24%), Gaps = 6/79 (7%)
Query: 442 CECPCEVDGHPSFVRNSPN--CSGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCK 499
C + N CS +G G C G C D + C
Sbjct: 40 CWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCP 99
Query: 500 ADANSTMECSGRGNCLCNQ 518
+ CS G C
Sbjct: 100 NNLC----CSQWGFCGLGS 114
Score = 29.6 bits (66), Expect = 2.1
Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 4/78 (5%)
Query: 441 QCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKA 500
+ + C N+ CS +G G C C D + C
Sbjct: 84 RADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVC-- 141
Query: 501 DANSTMECSGRGNCLCNQ 518
+ CS G+C
Sbjct: 142 --TNNYCCSKWGSCGIGP 157
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 33.9 bits (77), Expect = 0.19
Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 4/75 (5%)
Query: 444 CPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAE---SSQGITSTGCKA 500
C C+ G + G C C G RC+ E GCK+
Sbjct: 381 CTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKS 440
Query: 501 -DANSTMECSGRGNC 514
N G C
Sbjct: 441 CACNPLGTIPGGNPC 455
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.33
Identities = 7/27 (25%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 351 KDQYNKISSSVEM--KDTSSS-AVKVT 374
K K+ +S+++ D++ + A+K T
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKAT 45
>3otr_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, alpha-beta barrel, TIM barrel;
2.75A {Toxoplasma gondii}
Length = 452
Score = 32.9 bits (76), Expect = 0.45
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 221 NLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDA---EFHHAGDGK--LGGIVKPN 275
N+ E + +++AI + G+ + + + DA EF+ + K L K
Sbjct: 223 NVATAEEALNLLVEAI---KAAGYEGK----IKIAFDAAASEFYKQDEKKYDLDYKCKTK 275
Query: 276 DGLCHMDRNGM--YTHSTVQDYPSIS 299
+ H+ + ++ YP IS
Sbjct: 276 NASKHLTGEKLKEVYEGWLKKYPIIS 301
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system;
2.88A {Mus musculus}
Length = 291
Score = 31.5 bits (72), Expect = 0.94
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 72 SSSSSGSFSSGGSASGHSEAVQI-SPQHVSLKL 103
SS G GGS G S+ V SP +++
Sbjct: 141 SSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSA 173
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 29.7 bits (66), Expect = 1.2
Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 7/64 (10%)
Query: 58 ASKYHHSQHSSSSSSSSSSGSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDY-A 116
S +HH HSS S + +G + P K + DY A
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMATVNGAVEGSTTTGRLDLPPGFMFK------VQAQHDYTA 55
Query: 117 QAED 120
D
Sbjct: 56 TDTD 59
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 31.0 bits (69), Expect = 1.7
Identities = 16/79 (20%), Positives = 19/79 (24%), Gaps = 6/79 (7%)
Query: 442 CECPCEVDGHPSF--VRNSPNCSGFGTFKCGLCECDQSHFGRR-CECDAESSQGITSTGC 498
CE D C E D SH C D +S+ TS C
Sbjct: 736 NSLTCEKDTLTKLKGHCQLGQKQSGSECICMSPEEDCSHHSEDLCVFDTDSNDYFTSPAC 795
Query: 499 KADANSTMECSGRGNCLCN 517
K +C
Sbjct: 796 KF---LAEKCLNNQQLHFL 811
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A
{Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB:
1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A
4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A*
2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Length = 436
Score = 29.8 bits (68), Expect = 3.2
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 32/120 (26%)
Query: 196 YHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGF-----------DAIMQAIVCKEEIGW 244
YHN+ SL++ + +GN+ G EGG D I+ AI + G
Sbjct: 190 YHNLKSLTKK--------RYGASAGNV-GDEGGVAPNIQTAEEALDLIVDAI---KAAGH 237
Query: 245 RDRARRLLVFSTDA---EFHHAGDGKLGGIVKPNDGLCHMDRNGM--YTHSTVQDYPSIS 299
+ + D EF G L +D + + HS ++ YP +S
Sbjct: 238 DGK----VKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVS 293
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein;
1.91A {Glycine max}
Length = 403
Score = 29.7 bits (66), Expect = 3.4
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 440 MQCECP--CEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGITST 496
+ CE + P +S CS T +C C + C S+ IT
Sbjct: 49 VNCEQQYSSKTYQAPFC--HSTQCSRANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQ 105
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, blood
clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Length = 464
Score = 30.0 bits (67), Expect = 3.5
Identities = 18/141 (12%), Positives = 35/141 (24%), Gaps = 25/141 (17%)
Query: 61 YHHSQHSSSSSSSSSSGSFSSGGSASGHSEAVQISPQH------------VSLKLRINEA 108
+HH HSS + + F S + A +I+ V+L
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSNAMSQYPDFAFEINQNEFLAAGVREVHAVVTLTATAAAG 61
Query: 109 YRMVV--DYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFR----- 161
A A ++D S SM + ++ + +
Sbjct: 62 GAPAAASYGAPASGSENVEVIIIDCSGSMDYPRTKM----MAAKEATKVAIDTLTDGAFF 117
Query: 162 --LGFGSFVDKVVMPYVSMVP 180
+ V ++
Sbjct: 118 AVVAGTEGARVVYPTGGQLLR 138
>1yll_A PA5104, conserved hypothetical protein; structural genomics,
beta-BA PSI, protein structure initiative, midwest
center for struc genomics; 1.64A {Pseudomonas
aeruginosa} SCOP: b.82.1.17
Length = 200
Score = 29.2 bits (65), Expect = 4.0
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 221 NLDGP---------EGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGI 271
LDG A +Q + + E+ W A LL+F+ + G+ G
Sbjct: 103 LLDGAIRDFNLIYAPRRHRARLQWLRVEGELDWHGTASTLLLFAQQDGVAISLQGQPRGQ 162
Query: 272 VKPNDGLC 279
+ +D LC
Sbjct: 163 LAAHDCLC 170
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein,
unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Length = 240
Score = 29.1 bits (64), Expect = 4.1
Identities = 13/62 (20%), Positives = 20/62 (32%)
Query: 58 ASKYHHSQHSSSSSSSSSSGSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQ 117
S +HH HSS S + +GG G Q + I ++ A
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMKQYVARLEKDFSLIEHGFKEEEQRAL 61
Query: 118 AE 119
+
Sbjct: 62 TD 63
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET:
NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Length = 330
Score = 29.2 bits (66), Expect = 4.5
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 4/33 (12%)
Query: 59 SKYHHSQHSSSSSSSSSSGSFSS----GGSASG 87
+ ++ S G+ GSA G
Sbjct: 54 VCPNLQKYEKLKPKYISDGNVQVKFFDTGSAVG 86
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 29.6 bits (65), Expect = 5.0
Identities = 14/77 (18%), Positives = 21/77 (27%)
Query: 441 QCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKA 500
+ +D CSG G G C CD+ G C+ S
Sbjct: 521 DKQQTWAIDNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNR 580
Query: 501 DANSTMECSGRGNCLCN 517
++ + G L
Sbjct: 581 APSNQNWLTVSGGKLST 597
>2g40_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 1.70A {Deinococcus radiodurans} SCOP: c.124.1.7
Length = 224
Score = 28.8 bits (64), Expect = 5.1
Identities = 8/54 (14%), Positives = 19/54 (35%)
Query: 552 SAIVKTAGLVQRVTVAPLMTPVYLLREERCARARESVSAVCANVLKIAREDIPA 605
+ I + + + P P L R E + + + A ++ ++P
Sbjct: 28 TTINRAIAGSRPEALPPYPVPAPLSRAEILHQFEDRILDYGAAYTHVSAAELPG 81
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity,
glycolysis, , isothermal titration calorimetry, lyase;
1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A
1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Length = 439
Score = 29.0 bits (66), Expect = 5.8
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 13/84 (15%)
Query: 221 NLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDA---EFHHAGDGKLGGIVKPNDG 277
N+ + + +AI ++ G+ ++ +V D EF+ G L P D
Sbjct: 215 NILENSEALELVKEAI---DKAGYTEK----IVIGMDVAASEFYRDGKYDLDF-KSPTDP 266
Query: 278 LCHMDRNGM--YTHSTVQDYPSIS 299
++ + + V+DYP +S
Sbjct: 267 SRYITGDQLGALYQDFVRDYPVVS 290
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 26.3 bits (58), Expect = 5.8
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 443 ECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCE 484
ECP H + + C C C + G RC+
Sbjct: 5 ECPLS---HDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 26.3 bits (58), Expect = 6.2
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 443 ECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCE 484
CP + + N C + C C + G RC+
Sbjct: 5 GCPSS---YDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 28.9 bits (64), Expect = 6.4
Identities = 16/84 (19%), Positives = 22/84 (26%), Gaps = 10/84 (11%)
Query: 441 QCECPCEVDGHPSFVRNSPNCSGFGT--FKC----GLCECDQSHFGRRCECDAESSQGIT 494
CE CE+ + + C C C G +C G
Sbjct: 228 TCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACH--PGFY 285
Query: 495 STGCKADAN--STMECSGRGNCLC 516
CK + + C CLC
Sbjct: 286 GPDCKLRCSCNNGEMCDRFQGCLC 309
>1sfs_A Hypothetical protein; structural genomics, unknown function,
possible bacterial lysozyme, PSI, protein structure
initiative; 1.07A {Geobacillus stearothermophilus} SCOP:
c.1.8.8
Length = 240
Score = 28.5 bits (63), Expect = 6.5
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 61 YHHSQHSSSSSSSSSSGSFSSGG---SASGHSEAVQISPQHVSLKLRINEAYRMVV 113
+HH HSS + + F S G A ++ Q +R Y
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSNAMARGIWGVDSAQVVTDQLFQ-CVRTELGYPKFW 56
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane
protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a
1sht_X 1t6b_Y*
Length = 182
Score = 28.1 bits (63), Expect = 7.4
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 122 PVDLYYLMDLSNSMRDDKDR 141
DLY+++D S S+ ++
Sbjct: 6 AFDLYFVLDKSGSVANNWIE 25
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation,
thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A
{Desulfotalea psychrophila} PDB: 2uxr_A*
Length = 402
Score = 28.6 bits (63), Expect = 8.1
Identities = 24/143 (16%), Positives = 45/143 (31%), Gaps = 27/143 (18%)
Query: 230 DAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMY-- 287
D + + + + + W + V S + + G L + L Y
Sbjct: 250 DVVARMMKTEGGMLWACKNYDGDVMS---DMVASAFGSLAMMSSV---LVSPYGYFEYEA 303
Query: 288 THSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTH----------------I 331
H TVQ + + N + LI+A T + +R + I
Sbjct: 304 AHGTVQRHYYQHLKGERTSTNPVALIYAWTG---ALRKRGELDGTPDLCAFCDSLEAITI 360
Query: 332 EGSSSGTLTNDSSNVVDLVKDQY 354
E SG +T D + + + +
Sbjct: 361 ECIESGYMTGDLARICEPAAIKV 383
>2g58_A Phospholipase A2 VRV-PL-VIIIA; phospholipase A2, diars,
hydrolase-hydrolase inhibitor compl; HET: PHQ; 0.98A
{Daboia russellii pulchella} SCOP: a.133.1.2 PDB: 1cl5_A
1fb2_A* 1jq8_A 1jq9_A 1kpm_A* 1oxl_A* 1fv0_A* 1q7a_A
1skg_A* 1sv3_A* 1sv9_A* 1sxk_A* 1tdv_A 1tg1_A* 1tg4_A
1th6_A* 1sqz_A 1tjq_A* 1tk4_A 1tp2_A* ...
Length = 121
Score = 27.3 bits (60), Expect = 8.2
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 443 ECPCEVDGHP-SFVRNSPNCSGFGTFKCGLCECDQS 477
+C + D + V + C + + +CECD++
Sbjct: 56 DCNPKSDRYKYKRVNGAIVCEKGTSCENRICECDKA 91
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 28.5 bits (62), Expect = 8.4
Identities = 25/160 (15%), Positives = 40/160 (25%), Gaps = 32/160 (20%)
Query: 373 VTYHSKCLNKDGPSKPTAKCDGLKVGTVVHFE---------IDIEVTACPAN-RSEWMQT 422
C L TV + I I + + R W+Q
Sbjct: 114 FLVKEGCFPASAGKGCEGNSRELSEPTVYYTGDFEEWTRITIAIPRSLASSKTRFRWIQE 173
Query: 423 F----YIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSH 478
+ P G+D + + CP CSG G G+C CD +
Sbjct: 174 SSSQKNVPPFGLD-----GVYISEPCP-------------SYCSGHGDCISGVCFCDLGY 215
Query: 479 FGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLCNQ 518
+ C + + S + G +
Sbjct: 216 TAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGGQVGTG 255
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 28.7 bits (63), Expect = 9.0
Identities = 15/80 (18%), Positives = 21/80 (26%), Gaps = 16/80 (20%)
Query: 439 EMQCECPCEVDGHPSFVRNSPNC----SGFGTFKCGLCECDQSHFGRRCECDAESSQGIT 494
++ CEC G P+C + G C I+
Sbjct: 312 KLTCECEHNTTG--------PDCGKCKKNYQGRPWSPGSYLPIPKGAANACIP----SIS 359
Query: 495 STGCKADANSTMECSGRGNC 514
S G N + C G C
Sbjct: 360 SIGTNVCDNELLHCQNGGTC 379
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 27.7 bits (62), Expect = 9.6
Identities = 10/60 (16%), Positives = 15/60 (25%), Gaps = 10/60 (16%)
Query: 458 SPNCSGFGTFKC-GLCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLC 516
S + G+ + CD ++G C C GN C
Sbjct: 4 SHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYA---------CDQNGNKTC 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.402
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,031,743
Number of extensions: 664580
Number of successful extensions: 1749
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1638
Number of HSP's successfully gapped: 125
Length of query: 741
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 640
Effective length of database: 3,881,772
Effective search space: 2484334080
Effective search space used: 2484334080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.7 bits)