RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12966
(741 letters)
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 248
Score = 303 bits (777), Expect = 7e-99
Identities = 125/246 (50%), Positives = 168/246 (68%), Gaps = 5/246 (2%)
Query: 119 EDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSM 178
EDYPVD+YYLMDLS SM+DD + LG +L+ M+++TSN R+GFG+FVDK V PY+ +
Sbjct: 2 EDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYI 61
Query: 179 -VPKNLLEPC----AGCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIM 233
P+ L PC C +GY +V++L+ +RF+ +VK +VS N D PEGGFDAIM
Sbjct: 62 SPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIM 121
Query: 234 QAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQ 293
QA VC E+IGWR+ A LLVF+TDA+ H A DG+L GIV+PNDG CH+ + Y+ ST
Sbjct: 122 QATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTM 181
Query: 294 DYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQ 353
DYPS+ + K+ Q +INLIFAVT + +Y+ I G++ G L+ DSSNV+ L+ D
Sbjct: 182 DYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDA 241
Query: 354 YNKISS 359
Y KI S
Sbjct: 242 YGKIRS 247
>d1tyeb1 b.1.15.1 (B:58-106,B:355-440) Hybrid domain of integrin
beta {Human (Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 88.4 bits (219), Expect = 2e-21
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 354 YNKISSSVEMK-DTSSSAVKVTYHSKCLNKDGPSKPTAKCDGLKVGTVVHFEIDIEVTAC 412
++ VE++ + +++++ CLN + C GLK+G V F I+ +V C
Sbjct: 43 FSIQVRQVELEVRDLPEELSLSFNATCLN-NEVIPGLKSCMGLKIGDTVSFSIEAKVRGC 101
Query: 413 PANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCE 447
P E ++F I PVG ++L V + C+C C+
Sbjct: 102 P---QEKEKSFTIKPVGFKDSLIVQVTFDCDCACQ 133
Score = 41.4 bits (97), Expect = 5e-05
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 68 SSSSSSSSSGSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQ 117
S + S GS S+ Q+SPQ ++L+LR +++ + Q
Sbjct: 1 VSEARVLEDRPLSDKGSGDS-SQVTQVSPQRIALRLRPDDSKNFSIQVRQ 49
>d1jv2b3 d.200.1.1 (B:606-690) Integrin beta tail domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 59.4 bits (144), Expect = 8e-12
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 619 QEFKNCIQCQVLQ-----------------DRTIVRGGNEAKDENLCVYFDEDECKFEYV 661
K C++C+ ++ + KD C Y +ED+C +
Sbjct: 4 TFKKECVECKKFDREPYMTENTCNRYCRDEIESVKELKDTGKDAVNCTYKNEDDCVVRFQ 63
Query: 662 YWYDAQGKIHLRAQQERECPP 682
Y+ D+ GK L +E ECP
Sbjct: 64 YYEDSSGKSILYVVEEPECPK 84
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 43
Score = 31.3 bits (71), Expect = 0.029
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 461 CSGFGTFKCGLCECDQSHF-GRRCE 484
CSG G +CG C C Q G CE
Sbjct: 13 CSGRGKCECGSCVCIQPGSYGDTCE 37
Score = 23.9 bits (52), Expect = 9.9
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 507 ECSGRGNCLCNQ 518
CSGRG C C
Sbjct: 12 LCSGRGKCECGS 23
>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 27.5 bits (61), Expect = 0.40
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 461 CSGFGTFKCGLCECDQSHFGRRCEC 485
CSG G CG C CD G C C
Sbjct: 5 CSGHGQCSCGDCLCDSDWTGYYCNC 29
>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 41
Score = 27.1 bits (60), Expect = 0.75
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 459 PNCSGFGTFKCGLCECDQSHFGRRCE 484
G G CG C C G C+
Sbjct: 15 CGGPGRGLCFCGKCRCHPGFEGSACQ 40
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 29.0 bits (64), Expect = 1.5
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 122 PVDLYYLMDLSNSMRDD-----KDRLSALGDQLSASMQEV 156
P+D+ L+D S+S K A + + +
Sbjct: 2 PLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLT 41
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 26.4 bits (58), Expect = 1.7
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 442 CECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCE 484
CP + + N C + C C + G RC+
Sbjct: 4 PGCPSS---YDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function
associated antigen-1, LFA-1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 28.7 bits (63), Expect = 1.7
Identities = 19/144 (13%), Positives = 42/144 (29%), Gaps = 25/144 (17%)
Query: 122 PVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPK 181
VDL +L D S S++ D+ + + + + + + S
Sbjct: 2 NVDLVFLFDGSMSLQPDEFQK----------ILDFMKDVMKKCSNTSYQFAAVQFST--- 48
Query: 182 NLLEPCAGCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEE 241
+ + + + + + +EE
Sbjct: 49 -----SYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFG-----AINYVATEVF--REE 96
Query: 242 IGWRDRARRLLVFSTDAEFHHAGD 265
+G R A ++L+ TD E +G+
Sbjct: 97 LGARPDATKVLIIITDGEATDSGN 120
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 28.8 bits (63), Expect = 1.8
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 122 PVDLYYLMDLSNSMRDDKDRL 142
DLY+++D S S+ ++ +
Sbjct: 5 AFDLYFVLDKSGSVANNWIEI 25
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 202
Score = 28.7 bits (63), Expect = 2.1
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 122 PVDLYYLMDLSNSMRDD-----KDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYV 176
+DL +L+D S+ + + K + + ++L S + V + +
Sbjct: 13 LLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWV--RVAVVEYHDGSHAYIGLK 70
Query: 177 SMVPKNLL 184
+ L
Sbjct: 71 DRKRPSEL 78
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia
coli [TaxId: 562]}
Length = 119
Score = 27.3 bits (61), Expect = 2.8
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 686 ILGLVLGVIGAIVLIGLAFLCLWKILTSIH 715
+L IG + L + L LW L +H
Sbjct: 55 VLAFAQSFIGRVFLFLMIVLPLWCGLHRMH 84
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 189
Score = 27.3 bits (59), Expect = 5.5
Identities = 14/100 (14%), Positives = 24/100 (24%), Gaps = 13/100 (13%)
Query: 122 PVDLYYLMDLSNSMRDDK------------DRLSALGDQLSASMQEVTSNFRLGFGSFVD 169
D+ +L+D S S+ + Q S F F
Sbjct: 2 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRR 61
Query: 170 KV-VMPYVSMVPKNLLEPCAGCAAPYGYHNVMSLSQDTSR 208
+ ++ V + A H + S R
Sbjct: 62 SSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARR 101
>d1et9a1 b.40.2.2 (A:1-95) Streptococcal superantigen Spe-H
{Streptococcus pyogenes [TaxId: 1314]}
Length = 95
Score = 25.9 bits (56), Expect = 7.3
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 643 KDENLCVYFDEDECKFEYVYWYDAQGKIH-LRAQQERECPPHVY 685
KD+NL V+F++D E+ D + I+ L AQ+ ECP Y
Sbjct: 44 KDKNLSVFFEKDWISQEF---KDKEVDIYALSAQEVCECPGKRY 84
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel
{California sea hare (Aplysia californica) [TaxId:
6500]}
Length = 103
Score = 25.6 bits (56), Expect = 8.1
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 635 IVRGGNEAKDENLCVYFDEDECKFEYVYWYDAQGKIHLR 673
+ G +FD F + Y GK+H
Sbjct: 31 LTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYP 69
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId:
5141]}
Length = 284
Score = 26.8 bits (58), Expect = 8.6
Identities = 11/93 (11%), Positives = 19/93 (20%), Gaps = 5/93 (5%)
Query: 422 TFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGR 481
I + D + C C D ++ C + R
Sbjct: 23 DHSIIGKNVP---VADQSFRVGCSCASDEECM--YSTCQCLDEMAPDSDEEADPYTRKKR 77
Query: 482 RCECDAESSQGITSTGCKADANSTMECSGRGNC 514
+ +G+ EC C
Sbjct: 78 FAYYSQGAKKGLLRDRVLQSQEPIYECHQGCAC 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.402
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,692,941
Number of extensions: 127586
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 40
Length of query: 741
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 649
Effective length of database: 1,144,436
Effective search space: 742738964
Effective search space used: 742738964
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)